0s autopkgtest [22:11:58]: starting date and time: 2025-03-15 22:11:58+0000 0s autopkgtest [22:11:58]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [22:11:58]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.07ls_b10/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-gstat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@lcy02-7.secgroup --name adt-plucky-amd64-r-cran-gstat-20250315-221157-juju-7f2275-prod-proposed-migration-environment-15-2bb6b9ff-8c26-4fba-9f50-60e4989ae973 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 42s autopkgtest [22:12:40]: testbed dpkg architecture: amd64 42s autopkgtest [22:12:40]: testbed apt version: 2.9.31ubuntu1 42s autopkgtest [22:12:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup 42s autopkgtest [22:12:40]: testbed release detected to be: None 42s autopkgtest [22:12:40]: updating testbed package index (apt update) 43s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 43s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 43s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 43s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 43s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 43s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 43s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 43s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 43s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 43s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 43s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 43s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 43s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 43s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 43s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 43s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 43s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 43s Fetched 1265 kB in 0s (5936 kB/s) 44s Reading package lists... 44s + lsb_release --codename --short 44s + RELEASE=plucky 44s + cat 44s + [ plucky != trusty ] 44s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 44s Reading package lists... 44s Building dependency tree... 44s Reading state information... 45s Calculating upgrade... 45s Calculating upgrade... 45s The following package was automatically installed and is no longer required: 45s libnl-genl-3-200 45s Use 'sudo apt autoremove' to remove it. 45s The following NEW packages will be installed: 45s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 45s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 45s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 45s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 45s The following packages will be upgraded: 45s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 45s cloud-init cloud-init-base curl dosfstools fwupd gir1.2-girepository-2.0 45s gir1.2-glib-2.0 htop hwdata libapparmor1 libapt-pkg7.0 libaudit-common 45s libaudit1 libbinutils libbrotli1 libcap-ng0 libctf-nobfd0 libctf0 45s libcurl3t64-gnutls libcurl4t64 libestr0 libfwupd3 libgirepository-1.0-1 45s libglib2.0-0t64 libglib2.0-data libgprofng0 libjemalloc2 liblz4-1 liblzma5 45s libmm-glib0 libncurses6 libncursesw6 libnl-3-200 libnl-genl-3-200 45s libnl-route-3-200 libpci3 libpython3-stdlib libpython3.13 45s libpython3.13-minimal libpython3.13-stdlib libselinux1 libsframe1 45s libsqlite3-0 libtinfo6 libxml2 linux-firmware linux-generic 45s linux-headers-generic linux-headers-virtual linux-image-generic 45s linux-image-virtual linux-libc-dev linux-tools-common linux-virtual 45s media-types ncurses-base ncurses-bin ncurses-term pci.ids pciutils 45s pinentry-curses python-apt-common python3 python3-apt python3-cffi-backend 45s python3-dbus python3-gi python3-jinja2 python3-lazr.uri python3-markupsafe 45s python3-minimal python3-systemd python3-yaml python3.13 python3.13-gdbm 45s python3.13-minimal rsync rsyslog strace xz-utils 45s 86 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 45s Need to get 807 MB of archives. 45s After this operation, 326 MB of additional disk space will be used. 45s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 45s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 45s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 45s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 45s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 45s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 45s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 45s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 45s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 45s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 45s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 45s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 45s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 45s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 45s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 45s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 46s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 46s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 46s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 46s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 46s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 46s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 46s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 46s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 46s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 46s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 46s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 46s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 46s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 46s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 46s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 46s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 46s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 46s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 46s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 46s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 46s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 46s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 46s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 46s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 46s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 46s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 46s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 46s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 46s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 46s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 46s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 46s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 46s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 46s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 46s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 46s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 46s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 46s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 46s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 46s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 46s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 46s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 46s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 46s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 46s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 46s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 46s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 46s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 46s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 46s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 46s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 46s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 46s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 46s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 46s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 46s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 46s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 46s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 46s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 46s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 46s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 46s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 54s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 55s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 55s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 57s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 57s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 57s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 57s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 57s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 57s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 57s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 57s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 57s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 57s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 57s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 57s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 57s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 57s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 57s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 57s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 57s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 58s Preconfiguring packages ... 58s Fetched 807 MB in 12s (64.8 MB/s) 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 58s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ... 58s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ... 58s Setting up ncurses-bin (6.5+20250216-2) ... 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 58s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... 58s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ... 58s Setting up ncurses-base (6.5+20250216-2) ... 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 58s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ... 58s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ... 59s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ... 59s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ... 59s Setting up liblz4-1:amd64 (1.10.0-4) ... 59s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 59s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ... 59s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ... 59s Setting up liblzma5:amd64 (5.6.4-1) ... 59s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 59s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 59s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 59s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 59s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 59s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 59s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 60s Setting up apt (2.9.33) ... 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 60s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 60s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 60s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 60s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 60s Setting up python3-minimal (3.13.2-2) ... 60s (Reading database ... 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Preparing to unpack .../68-python3-systemd_235-1build6_amd64.deb ... 75s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 76s Preparing to unpack .../69-python3.13-gdbm_3.13.2-2_amd64.deb ... 76s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 76s Preparing to unpack .../70-cloud-init_25.1-0ubuntu3_all.deb ... 76s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 76s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 76s Setting up media-types (13.0.0) ... 76s Installing new version of config file /etc/mime.types ... 76s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 76s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 76s Setting up pci.ids (0.0~2025.03.09-1) ... 76s Setting up apt-utils (2.9.33) ... 76s Setting up libdebuginfod-common (0.192-4) ... 76s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 76s Setting up bpftool (7.6.0+6.14.0-10.10) ... 76s Setting up libestr0:amd64 (0.1.11-2) ... 76s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 76s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 76s Setting up dosfstools (4.2-1.2) ... 76s Setting up rsyslog (8.2412.0-2ubuntu2) ... 76s info: The user `syslog' is already a member of `adm'. 77s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 77s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 77s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 77s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 77s Setting up linux-headers-generic (6.14.0-10.10) ... 77s Setting up libjemalloc2:amd64 (5.3.0-3) ... 77s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 77s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 77s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 77s Installing new version of config file /etc/apparmor.d/openvpn ... 78s Reloading AppArmor profiles 79s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 79s No schema files found: doing nothing. 79s Setting up libglib2.0-data (2.84.0-1) ... 79s Setting up libncurses6:amd64 (6.5+20250216-2) ... 79s Setting up strace (6.13+ds-1ubuntu1) ... 79s Setting up xz-utils (5.6.4-1) ... 79s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 79s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 82s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 82s Setting up libpci3:amd64 (1:3.13.0-2) ... 82s Setting up python-apt-common (2.9.9build1) ... 82s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 82s Setting up pnp.ids (0.393-3) ... 82s Setting up libnl-3-200:amd64 (3.7.0-1) ... 82s Setting up python3.13-minimal (3.13.2-2) ... 82s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 82s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 82s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 82s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 82s Setting up rsync (3.4.1+ds1-3) ... 83s rsync.service is a disabled or a static unit not running, not starting it. 83s Setting up python3.13-gdbm (3.13.2-2) ... 83s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 83s Setting up ncurses-term (6.5+20250216-2) ... 83s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 83s Setting up libpython3.13:amd64 (3.13.2-2) ... 83s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 83s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 83s Setting up linux-headers-virtual (6.14.0-10.10) ... 83s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 83s Setting up python3.13 (3.13.2-2) ... 86s Setting up htop (3.4.0-2) ... 86s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 86s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 86s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 86s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 86s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 86s Setting up libfwupd3:amd64 (2.0.6-4) ... 86s Setting up python3 (3.13.2-2) ... 86s Setting up python3-markupsafe (2.1.5-1build4) ... 86s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 88s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 88s Setting up hwdata (0.393-3) ... 88s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 88s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 88s Setting up linux-perf (6.14.0-10.10) ... 88s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 88s Setting up python3-gi (3.50.0-4build1) ... 89s Setting up pciutils (1:3.13.0-2) ... 89s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 89s Setting up curl (8.12.1-3ubuntu1) ... 89s Setting up linux-image-virtual (6.14.0-10.10) ... 89s Setting up linux-tools-common (6.14.0-10.10) ... 89s Setting up fwupd (2.0.6-4) ... 89s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 89s fwupd.service is a disabled or a static unit not running, not starting it. 89s Setting up python3-systemd (235-1build6) ... 89s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 89s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 89s Setting up linux-image-generic (6.14.0-10.10) ... 89s Setting up python3-dbus (1.3.2-5build5) ... 89s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 89s Setting up linux-generic (6.14.0-10.10) ... 89s Setting up python3-apt (2.9.9build1) ... 90s Setting up python3-yaml (6.0.2-1build2) ... 90s Setting up python3-lazr.uri (1.0.6-6) ... 90s Setting up binutils (2.44-3ubuntu1) ... 90s Setting up cloud-init-base (25.1-0ubuntu3) ... 91s Setting up linux-virtual (6.14.0-10.10) ... 91s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 91s Setting up cloud-init (25.1-0ubuntu3) ... 91s Processing triggers for systemd (257.3-1ubuntu3) ... 91s Processing triggers for man-db (2.13.0-1) ... 93s Processing triggers for dbus (1.16.2-1ubuntu1) ... 93s Processing triggers for libc-bin (2.41-1ubuntu1) ... 93s Processing triggers for initramfs-tools (0.146ubuntu1) ... 93s update-initramfs: Generating /boot/initrd.img-6.12.0-16-generic 93s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 103s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 103s /etc/kernel/postinst.d/initramfs-tools: 103s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 103s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 114s /etc/kernel/postinst.d/zz-update-grub: 114s Sourcing file `/etc/default/grub' 114s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 114s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 114s Generating grub configuration file ... 114s Found linux image: /boot/vmlinuz-6.14.0-10-generic 114s Found initrd image: /boot/initrd.img-6.14.0-10-generic 114s Found linux image: /boot/vmlinuz-6.12.0-16-generic 114s Found initrd image: /boot/initrd.img-6.12.0-16-generic 114s Found linux image: /boot/vmlinuz-6.11.0-8-generic 114s Found initrd image: /boot/initrd.img-6.11.0-8-generic 114s Warning: os-prober will not be executed to detect other bootable partitions. 114s Systems on them will not be added to the GRUB boot configuration. 114s Check GRUB_DISABLE_OS_PROBER documentation entry. 114s Adding boot menu entry for UEFI Firmware Settings ... 114s done 114s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 114s + /usr/lib/apt/apt-helper analyze-pattern ?true 114s + + sed s/\./\\./g 114s uname -r 114s + running_kernel_pattern=^linux-.*6\.12\.0-16-generic.* 114s + apt list ?obsolete 114s + tail -n+2 114s + cut -d/ -f1 114s + grep -v ^linux-.*6\.12\.0-16-generic.* 116s + obsolete_pkgs=linux-headers-6.11.0-8-generic 116s linux-headers-6.11.0-8 116s linux-headers-6.12.0-16 116s linux-image-6.11.0-8-generic 116s linux-modules-6.11.0-8-generic 116s linux-tools-6.11.0-8-generic 116s linux-tools-6.11.0-8 116s linux-tools-6.12.0-16 116s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-headers-6.12.0-16 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 linux-tools-6.12.0-16 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 116s Solving dependencies... 116s The following packages will be REMOVED: 116s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 116s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 116s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 116s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 116s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 116s linux-tools-6.12.0-16-generic* 117s 0 upgraded, 0 newly installed, 15 to remove and 5 not upgraded. 117s After this operation, 371 MB disk space will be freed. 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 117s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 117s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 117s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 117s Removing libpython3.12t64:amd64 (3.12.9-1) ... 117s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 117s Removing libnsl2:amd64 (1.3.0-3build3) ... 117s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 117s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 118s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 120s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 120s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 122s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 122s /etc/kernel/postrm.d/initramfs-tools: 122s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 122s /etc/kernel/postrm.d/zz-update-grub: 122s Sourcing file `/etc/default/grub' 122s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 122s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 122s Generating grub configuration file ... 123s Found linux image: /boot/vmlinuz-6.14.0-10-generic 123s Found initrd image: /boot/initrd.img-6.14.0-10-generic 123s Found linux image: /boot/vmlinuz-6.12.0-16-generic 123s Found initrd image: /boot/initrd.img-6.12.0-16-generic 123s Warning: os-prober will not be executed to detect other bootable partitions. 123s Systems on them will not be added to the GRUB boot configuration. 123s Check GRUB_DISABLE_OS_PROBER documentation entry. 123s Adding boot menu entry for UEFI Firmware Settings ... 123s done 123s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 123s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 123s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 123s Processing triggers for libc-bin (2.41-1ubuntu1) ... 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84830 files and directories currently installed.) 123s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 123s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 123s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 124s + grep -q trusty /etc/lsb-release 124s + [ ! -d /usr/share/doc/unattended-upgrades ] 124s + [ ! -d /usr/share/doc/lxd ] 124s + [ ! -d /usr/share/doc/lxd-client ] 124s + [ ! -d /usr/share/doc/snapd ] 124s + type iptables 124s + cat 124s + chmod 755 /etc/rc.local 124s + . /etc/rc.local 124s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 124s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 124s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 124s + uname -m 124s + [ x86_64 = ppc64le ] 124s + [ -d /run/systemd/system ] 124s + systemd-detect-virt --quiet --vm 124s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 124s + cat 124s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 124s + echo COMPRESS=lz4 124s autopkgtest [22:14:02]: upgrading testbed (apt dist-upgrade and autopurge) 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 124s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 124s Starting 2 pkgProblemResolver with broken count: 0 124s Done 125s Entering ResolveByKeep 125s 125s Calculating upgrade... 126s The following packages will be upgraded: 126s libc-bin libc-dev-bin libc6 libc6-dev locales 126s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s Need to get 10.5 MB of archives. 126s After this operation, 1024 B of additional disk space will be used. 126s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 126s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 126s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 126s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 126s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 126s Preconfiguring packages ... 126s Fetched 10.5 MB in 0s (24.0 MB/s) 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 126s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 126s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 127s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 127s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 127s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 127s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 127s Setting up libc6:amd64 (2.41-1ubuntu2) ... 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 127s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 127s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 127s Setting up libc-bin (2.41-1ubuntu2) ... 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 127s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 127s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 128s Setting up locales (2.41-1ubuntu2) ... 128s Generating locales (this might take a while)... 130s en_US.UTF-8... done 130s Generation complete. 130s Setting up libc-dev-bin (2.41-1ubuntu2) ... 130s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 130s Processing triggers for man-db (2.13.0-1) ... 130s Processing triggers for systemd (257.3-1ubuntu3) ... 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 132s Starting pkgProblemResolver with broken count: 0 132s Starting 2 pkgProblemResolver with broken count: 0 132s Done 132s Solving dependencies... 132s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s autopkgtest [22:14:10]: rebooting testbed after setup commands that affected boot 136s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 147s autopkgtest [22:14:25]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 148s autopkgtest [22:14:26]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-gstat 149s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-3-1 (dsc) [2317 B] 149s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-3-1 (tar) [2283 kB] 149s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-3-1 (diff) [3748 B] 149s gpgv: Signature made Sun Feb 9 23:46:19 2025 UTC 149s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 149s gpgv: issuer "plessy@debian.org" 149s gpgv: Can't check signature: No public key 149s dpkg-source: warning: cannot verify inline signature for ./r-cran-gstat_2.1-3-1.dsc: no acceptable signature found 149s autopkgtest [22:14:27]: testing package r-cran-gstat version 2.1-3-1 150s autopkgtest [22:14:28]: build not needed 151s autopkgtest [22:14:29]: test run-unit-test: preparing testbed 151s Reading package lists... 151s Building dependency tree... 151s Reading state information... 152s Starting pkgProblemResolver with broken count: 0 152s Starting 2 pkgProblemResolver with broken count: 0 152s Done 152s The following NEW packages will be installed: 152s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gdal-data 152s gdal-plugins libabsl20230802 libaec0 libaom3 libarmadillo14 libarpack2t64 152s libavif16 libblas3 libblosc1 libcairo2 libcfitsio10t64 libdatrie1 libdav1d7 152s libde265-0 libdeflate0 libfontconfig1 libfreexl1 libfyba0t64 libgav1-1 152s libgdal36 libgeos-c1t64 libgeos3.13.1 libgeotiff5 libgfortran5 libgif7 152s libgomp1 libgpgmepp6t64 libgraphite2-3 libharfbuzz0b libhdf4-0-alt 152s libhdf5-310 libhdf5-hl-310 libheif-plugin-aomdec libheif-plugin-libde265 152s libheif1 libice6 libjbig0 libjpeg-turbo8 libjpeg8 libkmlbase1t64 152s libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 152s libminizip1t64 libmysqlclient24 libnetcdf22 libodbc2 libodbcinst2 libogdi4.1 152s libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 152s libpaper-utils libpaper2 libpixman-1-0 libpoppler147 libpq5 libproj25 152s libqhull-r8.0 librav1e0.7 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 152s libspatialite8t64 libsvtav1enc2 libsz2 libtcl8.6 libthai-data libthai0 152s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 152s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 152s libxt6t64 libyuv0 littler mysql-common proj-data r-base-core r-cran-abind 152s r-cran-class r-cran-classint r-cran-cli r-cran-codetools r-cran-colorspace 152s r-cran-dbi r-cran-digest r-cran-dotcall64 r-cran-e1071 r-cran-fansi 152s r-cran-farver r-cran-fields r-cran-fnn r-cran-future r-cran-future.apply 152s r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gstat r-cran-gtable 152s r-cran-intervals r-cran-isoband r-cran-kernsmooth r-cran-labeling 152s r-cran-lattice r-cran-lifecycle r-cran-listenv r-cran-littler 152s r-cran-magrittr r-cran-mapdata r-cran-maps r-cran-mass r-cran-matrix 152s r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-parallelly r-cran-pillar 152s r-cran-pkgconfig r-cran-pkgkitten r-cran-proxy r-cran-r6 r-cran-raster 152s r-cran-rcolorbrewer r-cran-rcpp r-cran-rlang r-cran-s2 r-cran-scales 152s r-cran-sf r-cran-sftime r-cran-sp r-cran-spacetime r-cran-spam r-cran-stars 152s r-cran-terra r-cran-tibble r-cran-units r-cran-utf8 r-cran-vctrs 152s r-cran-viridislite r-cran-withr r-cran-wk r-cran-xts r-cran-zoo 152s unixodbc-common unzip x11-common xdg-utils zip 152s 0 upgraded, 167 newly installed, 0 to remove and 0 not upgraded. 152s Need to get 180 MB of archives. 152s After this operation, 384 MB of additional disk space will be used. 152s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 152s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 152s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 152s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 152s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 152s Get:6 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-data all 3.10.2+dfsg-1build3 [269 kB] 152s Get:7 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-plugins amd64 3.10.2+dfsg-1build3 [25.7 kB] 152s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libabsl20230802 amd64 20230802.1-4.2 [567 kB] 152s Get:9 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 152s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libaom3 amd64 3.12.0-1 [2742 kB] 152s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 152s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 152s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 152s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarpack2t64 amd64 3.9.1-4 [120 kB] 152s Get:15 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarmadillo14 amd64 1:14.2.3+dfsg-1 [105 kB] 152s Get:16 http://ftpmaster.internal/ubuntu plucky/universe amd64 libdav1d7 amd64 1.5.1-1 [743 kB] 152s Get:17 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgav1-1 amd64 0.19.0-3 [697 kB] 152s Get:18 http://ftpmaster.internal/ubuntu plucky/universe amd64 librav1e0.7 amd64 0.7.1-9 [1025 kB] 152s Get:19 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2686 kB] 152s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 152s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 152s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libyuv0 amd64 0.0.1904.20250204-1 [354 kB] 152s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 libavif16 amd64 1.2.0-1ubuntu1 [140 kB] 152s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB] 152s Get:25 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB] 152s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 152s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 152s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 152s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 152s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 152s Get:31 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcfitsio10t64 amd64 4.5.0-5 [629 kB] 152s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 152s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libde265-0 amd64 1.0.15-1build5 [285 kB] 152s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 152s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfyba0t64 amd64 4.1.1-11build1 [119 kB] 152s Get:36 http://ftpmaster.internal/ubuntu plucky/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [22.9 kB] 152s Get:37 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfreexl1 amd64 2.0.0-1build2 [41.7 kB] 152s Get:38 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos3.13.1 amd64 3.13.1-1 [1017 kB] 152s Get:39 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos-c1t64 amd64 3.13.1-1 [103 kB] 152s Get:40 http://ftpmaster.internal/ubuntu plucky/universe amd64 proj-data all 9.5.1-1 [7924 kB] 152s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 152s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 152s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 152s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 153s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 153s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 libproj25 amd64 9.5.1-1 [1499 kB] 153s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeotiff5 amd64 1.7.4-1 [60.2 kB] 153s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libgif7 amd64 5.2.2-1ubuntu2 [36.0 kB] 153s Get:49 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 153s Get:50 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf4-0-alt amd64 4.3.0-1 [285 kB] 153s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 153s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-aomdec amd64 1.19.7-1 [11.6 kB] 153s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-libde265 amd64 1.19.7-1 [9060 B] 153s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif1 amd64 1.19.7-1 [428 kB] 153s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB] 153s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlbase1t64 amd64 1.3.0-12build1 [49.9 kB] 153s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmldom1t64 amd64 1.3.0-12build1 [156 kB] 153s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlengine1t64 amd64 1.3.0-12build1 [71.4 kB] 153s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 mysql-common all 5.8+1.1.1ubuntu1 [6922 B] 153s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libmysqlclient24 amd64 8.4.4-0ubuntu2 [1257 kB] 153s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 153s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf22 amd64 1:4.9.3-1 [574 kB] 153s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libltdl7 amd64 2.5.4-4 [46.5 kB] 153s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbc2 amd64 2.3.12-2ubuntu1 [186 kB] 153s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 unixodbc-common all 2.3.12-2ubuntu1 [9044 B] 153s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbcinst2 amd64 2.3.12-2ubuntu1 [34.1 kB] 153s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 libogdi4.1 amd64 4.1.1+ds-5 [219 kB] 153s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.3-2 [218 kB] 153s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgmepp6t64 amd64 1.24.2-1ubuntu2 [126 kB] 153s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 153s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libpoppler147 amd64 25.03.0-2 [1295 kB] 153s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libpq5 amd64 17.4-1 [155 kB] 153s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 153s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 librttopo1 amd64 1.1.0-4 [205 kB] 153s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libspatialite8t64 amd64 5.1.0-3build1 [1919 kB] 153s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build1 [1028 kB] 153s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgdal36 amd64 3.10.2+dfsg-1build3 [10.3 MB] 153s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 153s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 153s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 153s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 153s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 153s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 153s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 153s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 153s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 153s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 153s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 153s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 153s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 153s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 153s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 153s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 153s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 153s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 libudunits2-data all 2.2.28-7build1 [19.4 kB] 153s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 libudunits2-0 amd64 2.2.28-7build1 [54.1 kB] 153s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 153s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 153s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 153s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 153s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 153s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 153s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 153s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 153s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 153s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 153s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 153s Get:108 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-e1071 amd64 1.7-16-1 [565 kB] 153s Get:109 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernsmooth amd64 2.23-26-1 [94.5 kB] 153s Get:110 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB] 153s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 153s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 153s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 153s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 153s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 153s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dotcall64 amd64 1.2-1 [36.8 kB] 153s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 153s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 153s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 153s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 153s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spam amd64 2.11-1-1 [2756 kB] 153s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 153s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-maps amd64 3.4.2.1-1 [2352 kB] 153s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fields amd64 16.3.1-1 [3766 kB] 153s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 153s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-globals all 0.16.3-1 [120 kB] 153s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 153s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-parallelly amd64 1.42.0-1 [540 kB] 153s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 153s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 153s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 153s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 153s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 153s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 153s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 153s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 153s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB] 153s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 153s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 153s Get:140 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 153s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 153s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 153s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 153s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 153s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 153s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 153s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 153s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 153s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 153s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 153s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 153s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 153s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB] 153s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-zoo amd64 1.8-13-1 [999 kB] 153s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB] 153s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-s2 amd64 1.1.7-1 [2023 kB] 153s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-units amd64 0.8-5+dfsg-1 [275 kB] 153s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sf amd64 1.0-19+dfsg-1 [3313 kB] 153s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sftime all 0.2-0-6 [168 kB] 153s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xts amd64 0.14.1-1 [1198 kB] 153s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-intervals amd64 0.15.5-1 [602 kB] 153s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spacetime all 1.3-3-1 [2780 kB] 153s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stars all 0.6-8-1 [4414 kB] 154s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gstat amd64 2.1-3-1 [2346 kB] 154s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB] 154s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-terra amd64 1.8-29-1 [4306 kB] 154s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-raster amd64 3.6-31-1 [3176 kB] 154s Preconfiguring packages ... 154s Fetched 180 MB in 2s (116 MB/s) 154s Selecting previously unselected package fonts-dejavu-mono. 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 155s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ... 155s Unpacking fonts-dejavu-mono (2.37-8) ... 155s Selecting previously unselected package fonts-dejavu-core. 155s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ... 155s Unpacking fonts-dejavu-core (2.37-8) ... 155s Selecting previously unselected package fontconfig-config. 155s Preparing to unpack .../002-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 155s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 155s Selecting previously unselected package libfontconfig1:amd64. 155s Preparing to unpack .../003-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 155s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 155s Selecting previously unselected package fontconfig. 155s Preparing to unpack .../004-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 155s Unpacking fontconfig (2.15.0-2ubuntu1) ... 155s Selecting previously unselected package gdal-data. 155s Preparing to unpack .../005-gdal-data_3.10.2+dfsg-1build3_all.deb ... 155s Unpacking gdal-data (3.10.2+dfsg-1build3) ... 155s Selecting previously unselected package gdal-plugins:amd64. 155s Preparing to unpack .../006-gdal-plugins_3.10.2+dfsg-1build3_amd64.deb ... 155s Unpacking gdal-plugins:amd64 (3.10.2+dfsg-1build3) ... 155s Selecting previously unselected package libabsl20230802:amd64. 155s Preparing to unpack .../007-libabsl20230802_20230802.1-4.2_amd64.deb ... 155s Unpacking libabsl20230802:amd64 (20230802.1-4.2) ... 155s Selecting previously unselected package libaec0:amd64. 155s Preparing to unpack .../008-libaec0_1.1.3-1_amd64.deb ... 155s Unpacking libaec0:amd64 (1.1.3-1) ... 155s Selecting previously unselected package libaom3:amd64. 155s Preparing to unpack .../009-libaom3_3.12.0-1_amd64.deb ... 155s Unpacking libaom3:amd64 (3.12.0-1) ... 155s Selecting previously unselected package libblas3:amd64. 155s Preparing to unpack .../010-libblas3_3.12.1-2_amd64.deb ... 155s Unpacking libblas3:amd64 (3.12.1-2) ... 155s Selecting previously unselected package libgfortran5:amd64. 155s Preparing to unpack .../011-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 155s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 155s Selecting previously unselected package liblapack3:amd64. 155s Preparing to unpack .../012-liblapack3_3.12.1-2_amd64.deb ... 155s Unpacking liblapack3:amd64 (3.12.1-2) ... 155s Selecting previously unselected package libarpack2t64:amd64. 155s Preparing to unpack .../013-libarpack2t64_3.9.1-4_amd64.deb ... 155s Unpacking libarpack2t64:amd64 (3.9.1-4) ... 155s Selecting previously unselected package libarmadillo14. 155s Preparing to unpack .../014-libarmadillo14_1%3a14.2.3+dfsg-1_amd64.deb ... 155s Unpacking libarmadillo14 (1:14.2.3+dfsg-1) ... 156s Selecting previously unselected package libdav1d7:amd64. 156s Preparing to unpack .../015-libdav1d7_1.5.1-1_amd64.deb ... 156s Unpacking libdav1d7:amd64 (1.5.1-1) ... 156s Selecting previously unselected package libgav1-1:amd64. 156s Preparing to unpack .../016-libgav1-1_0.19.0-3_amd64.deb ... 156s Unpacking libgav1-1:amd64 (0.19.0-3) ... 156s Selecting previously unselected package librav1e0.7:amd64. 156s Preparing to unpack .../017-librav1e0.7_0.7.1-9_amd64.deb ... 156s Unpacking librav1e0.7:amd64 (0.7.1-9) ... 156s Selecting previously unselected package libsvtav1enc2:amd64. 156s Preparing to unpack .../018-libsvtav1enc2_2.3.0+dfsg-1_amd64.deb ... 156s Unpacking libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... 156s Selecting previously unselected package libjpeg-turbo8:amd64. 156s Preparing to unpack .../019-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 156s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 156s Selecting previously unselected package libjpeg8:amd64. 156s Preparing to unpack .../020-libjpeg8_8c-2ubuntu11_amd64.deb ... 156s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 156s Selecting previously unselected package libyuv0:amd64. 156s Preparing to unpack .../021-libyuv0_0.0.1904.20250204-1_amd64.deb ... 156s Unpacking libyuv0:amd64 (0.0.1904.20250204-1) ... 156s Selecting previously unselected package libavif16:amd64. 156s Preparing to unpack .../022-libavif16_1.2.0-1ubuntu1_amd64.deb ... 156s Unpacking libavif16:amd64 (1.2.0-1ubuntu1) ... 156s Selecting previously unselected package libsnappy1v5:amd64. 156s Preparing to unpack .../023-libsnappy1v5_1.2.1-1_amd64.deb ... 156s Unpacking libsnappy1v5:amd64 (1.2.1-1) ... 156s Selecting previously unselected package libblosc1:amd64. 156s Preparing to unpack .../024-libblosc1_1.21.5+ds-1build1_amd64.deb ... 156s Unpacking libblosc1:amd64 (1.21.5+ds-1build1) ... 156s Selecting previously unselected package libpixman-1-0:amd64. 156s Preparing to unpack .../025-libpixman-1-0_0.44.0-3_amd64.deb ... 156s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 156s Selecting previously unselected package libxcb-render0:amd64. 156s Preparing to unpack .../026-libxcb-render0_1.17.0-2_amd64.deb ... 156s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 156s Selecting previously unselected package libxcb-shm0:amd64. 156s Preparing to unpack .../027-libxcb-shm0_1.17.0-2_amd64.deb ... 156s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 156s Selecting previously unselected package libxrender1:amd64. 156s Preparing to unpack .../028-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 156s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 156s Selecting previously unselected package libcairo2:amd64. 156s Preparing to unpack .../029-libcairo2_1.18.2-2_amd64.deb ... 156s Unpacking libcairo2:amd64 (1.18.2-2) ... 156s Selecting previously unselected package libcfitsio10t64:amd64. 156s Preparing to unpack .../030-libcfitsio10t64_4.5.0-5_amd64.deb ... 156s Unpacking libcfitsio10t64:amd64 (4.5.0-5) ... 156s Selecting previously unselected package libdatrie1:amd64. 156s Preparing to unpack .../031-libdatrie1_0.2.13-3build1_amd64.deb ... 156s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 156s Selecting previously unselected package libde265-0:amd64. 156s Preparing to unpack .../032-libde265-0_1.0.15-1build5_amd64.deb ... 156s Unpacking libde265-0:amd64 (1.0.15-1build5) ... 156s Selecting previously unselected package libdeflate0:amd64. 156s Preparing to unpack .../033-libdeflate0_1.23-1_amd64.deb ... 156s Unpacking libdeflate0:amd64 (1.23-1) ... 156s Selecting previously unselected package libfyba0t64:amd64. 156s Preparing to unpack .../034-libfyba0t64_4.1.1-11build1_amd64.deb ... 156s Unpacking libfyba0t64:amd64 (4.1.1-11build1) ... 156s Selecting previously unselected package libminizip1t64:amd64. 156s Preparing to unpack .../035-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 156s Unpacking libminizip1t64:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 156s Selecting previously unselected package libfreexl1:amd64. 156s Preparing to unpack .../036-libfreexl1_2.0.0-1build2_amd64.deb ... 156s Unpacking libfreexl1:amd64 (2.0.0-1build2) ... 156s Selecting previously unselected package libgeos3.13.1:amd64. 156s Preparing to unpack .../037-libgeos3.13.1_3.13.1-1_amd64.deb ... 156s Unpacking libgeos3.13.1:amd64 (3.13.1-1) ... 156s Selecting previously unselected package libgeos-c1t64:amd64. 156s Preparing to unpack .../038-libgeos-c1t64_3.13.1-1_amd64.deb ... 156s Unpacking libgeos-c1t64:amd64 (3.13.1-1) ... 156s Selecting previously unselected package proj-data. 156s Preparing to unpack .../039-proj-data_9.5.1-1_all.deb ... 156s Unpacking proj-data (9.5.1-1) ... 156s Selecting previously unselected package libjbig0:amd64. 156s Preparing to unpack .../040-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 156s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 156s Selecting previously unselected package liblerc4:amd64. 156s Preparing to unpack .../041-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 156s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 156s Selecting previously unselected package libsharpyuv0:amd64. 156s Preparing to unpack .../042-libsharpyuv0_1.5.0-0.1_amd64.deb ... 156s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 156s Selecting previously unselected package libwebp7:amd64. 156s Preparing to unpack .../043-libwebp7_1.5.0-0.1_amd64.deb ... 156s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 156s Selecting previously unselected package libtiff6:amd64. 157s Preparing to unpack .../044-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 157s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 157s Selecting previously unselected package libproj25:amd64. 157s Preparing to unpack .../045-libproj25_9.5.1-1_amd64.deb ... 157s Unpacking libproj25:amd64 (9.5.1-1) ... 157s Selecting previously unselected package libgeotiff5:amd64. 157s Preparing to unpack .../046-libgeotiff5_1.7.4-1_amd64.deb ... 157s Unpacking libgeotiff5:amd64 (1.7.4-1) ... 157s Selecting previously unselected package libgif7:amd64. 157s Preparing to unpack .../047-libgif7_5.2.2-1ubuntu2_amd64.deb ... 157s Unpacking libgif7:amd64 (5.2.2-1ubuntu2) ... 157s Selecting previously unselected package libsz2:amd64. 157s Preparing to unpack .../048-libsz2_1.1.3-1_amd64.deb ... 157s Unpacking libsz2:amd64 (1.1.3-1) ... 157s Selecting previously unselected package libhdf4-0-alt:amd64. 157s Preparing to unpack .../049-libhdf4-0-alt_4.3.0-1_amd64.deb ... 157s Unpacking libhdf4-0-alt:amd64 (4.3.0-1) ... 157s Selecting previously unselected package libhdf5-310:amd64. 157s Preparing to unpack .../050-libhdf5-310_1.14.5+repack-3_amd64.deb ... 157s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... 157s Selecting previously unselected package libheif-plugin-aomdec:amd64. 157s Preparing to unpack .../051-libheif-plugin-aomdec_1.19.7-1_amd64.deb ... 157s Unpacking libheif-plugin-aomdec:amd64 (1.19.7-1) ... 157s Selecting previously unselected package libheif-plugin-libde265:amd64. 157s Preparing to unpack .../052-libheif-plugin-libde265_1.19.7-1_amd64.deb ... 157s Unpacking libheif-plugin-libde265:amd64 (1.19.7-1) ... 157s Selecting previously unselected package libheif1:amd64. 157s Preparing to unpack .../053-libheif1_1.19.7-1_amd64.deb ... 157s Unpacking libheif1:amd64 (1.19.7-1) ... 157s Selecting previously unselected package liburiparser1:amd64. 157s Preparing to unpack .../054-liburiparser1_0.9.8+dfsg-2_amd64.deb ... 157s Unpacking liburiparser1:amd64 (0.9.8+dfsg-2) ... 157s Selecting previously unselected package libkmlbase1t64:amd64. 157s Preparing to unpack .../055-libkmlbase1t64_1.3.0-12build1_amd64.deb ... 157s Unpacking libkmlbase1t64:amd64 (1.3.0-12build1) ... 157s Selecting previously unselected package libkmldom1t64:amd64. 157s Preparing to unpack .../056-libkmldom1t64_1.3.0-12build1_amd64.deb ... 157s Unpacking libkmldom1t64:amd64 (1.3.0-12build1) ... 157s Selecting previously unselected package libkmlengine1t64:amd64. 157s Preparing to unpack .../057-libkmlengine1t64_1.3.0-12build1_amd64.deb ... 157s Unpacking libkmlengine1t64:amd64 (1.3.0-12build1) ... 157s Selecting previously unselected package mysql-common. 157s Preparing to unpack .../058-mysql-common_5.8+1.1.1ubuntu1_all.deb ... 157s Unpacking mysql-common (5.8+1.1.1ubuntu1) ... 157s Selecting previously unselected package libmysqlclient24:amd64. 157s Preparing to unpack .../059-libmysqlclient24_8.4.4-0ubuntu2_amd64.deb ... 157s Unpacking libmysqlclient24:amd64 (8.4.4-0ubuntu2) ... 157s Selecting previously unselected package libhdf5-hl-310:amd64. 157s Preparing to unpack .../060-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ... 157s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 157s Selecting previously unselected package libnetcdf22:amd64. 157s Preparing to unpack .../061-libnetcdf22_1%3a4.9.3-1_amd64.deb ... 157s Unpacking libnetcdf22:amd64 (1:4.9.3-1) ... 157s Selecting previously unselected package libltdl7:amd64. 157s Preparing to unpack .../062-libltdl7_2.5.4-4_amd64.deb ... 157s Unpacking libltdl7:amd64 (2.5.4-4) ... 157s Selecting previously unselected package libodbc2:amd64. 157s Preparing to unpack .../063-libodbc2_2.3.12-2ubuntu1_amd64.deb ... 157s Unpacking libodbc2:amd64 (2.3.12-2ubuntu1) ... 157s Selecting previously unselected package unixodbc-common. 157s Preparing to unpack .../064-unixodbc-common_2.3.12-2ubuntu1_all.deb ... 157s Unpacking unixodbc-common (2.3.12-2ubuntu1) ... 157s Selecting previously unselected package libodbcinst2:amd64. 157s Preparing to unpack .../065-libodbcinst2_2.3.12-2ubuntu1_amd64.deb ... 157s Unpacking libodbcinst2:amd64 (2.3.12-2ubuntu1) ... 157s Selecting previously unselected package libogdi4.1:amd64. 157s Preparing to unpack .../066-libogdi4.1_4.1.1+ds-5_amd64.deb ... 157s Unpacking libogdi4.1:amd64 (4.1.1+ds-5) ... 157s Selecting previously unselected package libopenjp2-7:amd64. 157s Preparing to unpack .../067-libopenjp2-7_2.5.3-2_amd64.deb ... 157s Unpacking libopenjp2-7:amd64 (2.5.3-2) ... 157s Selecting previously unselected package libgpgmepp6t64:amd64. 157s Preparing to unpack .../068-libgpgmepp6t64_1.24.2-1ubuntu2_amd64.deb ... 157s Unpacking libgpgmepp6t64:amd64 (1.24.2-1ubuntu2) ... 157s Selecting previously unselected package liblcms2-2:amd64. 157s Preparing to unpack .../069-liblcms2-2_2.16-2_amd64.deb ... 157s Unpacking liblcms2-2:amd64 (2.16-2) ... 157s Selecting previously unselected package libpoppler147:amd64. 157s Preparing to unpack .../070-libpoppler147_25.03.0-2_amd64.deb ... 157s Unpacking libpoppler147:amd64 (25.03.0-2) ... 157s Selecting previously unselected package libpq5:amd64. 157s Preparing to unpack .../071-libpq5_17.4-1_amd64.deb ... 157s Unpacking libpq5:amd64 (17.4-1) ... 157s Selecting previously unselected package libqhull-r8.0:amd64. 157s Preparing to unpack .../072-libqhull-r8.0_2020.2-6build1_amd64.deb ... 157s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 157s Selecting previously unselected package librttopo1:amd64. 157s Preparing to unpack .../073-librttopo1_1.1.0-4_amd64.deb ... 157s Unpacking librttopo1:amd64 (1.1.0-4) ... 157s Selecting previously unselected package libspatialite8t64:amd64. 157s Preparing to unpack .../074-libspatialite8t64_5.1.0-3build1_amd64.deb ... 157s Unpacking libspatialite8t64:amd64 (5.1.0-3build1) ... 157s Selecting previously unselected package libxerces-c3.2t64:amd64. 157s Preparing to unpack .../075-libxerces-c3.2t64_3.2.4+debian-1.3build1_amd64.deb ... 157s Unpacking libxerces-c3.2t64:amd64 (3.2.4+debian-1.3build1) ... 158s Selecting previously unselected package libgdal36:amd64. 158s Preparing to unpack .../076-libgdal36_3.10.2+dfsg-1build3_amd64.deb ... 158s Unpacking libgdal36:amd64 (3.10.2+dfsg-1build3) ... 158s Selecting previously unselected package libgomp1:amd64. 158s Preparing to unpack .../077-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 158s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 158s Selecting previously unselected package libgraphite2-3:amd64. 158s Preparing to unpack .../078-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 158s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 158s Selecting previously unselected package libharfbuzz0b:amd64. 158s Preparing to unpack .../079-libharfbuzz0b_10.2.0-1_amd64.deb ... 158s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 158s Selecting previously unselected package x11-common. 158s Preparing to unpack .../080-x11-common_1%3a7.7+23ubuntu3_all.deb ... 158s Unpacking x11-common (1:7.7+23ubuntu3) ... 158s Selecting previously unselected package libice6:amd64. 158s Preparing to unpack .../081-libice6_2%3a1.1.1-1_amd64.deb ... 158s Unpacking libice6:amd64 (2:1.1.1-1) ... 158s Selecting previously unselected package libthai-data. 158s Preparing to unpack .../082-libthai-data_0.1.29-2build1_all.deb ... 158s Unpacking libthai-data (0.1.29-2build1) ... 158s Selecting previously unselected package libthai0:amd64. 158s Preparing to unpack .../083-libthai0_0.1.29-2build1_amd64.deb ... 158s Unpacking libthai0:amd64 (0.1.29-2build1) ... 158s Selecting previously unselected package libpango-1.0-0:amd64. 158s Preparing to unpack .../084-libpango-1.0-0_1.56.2-1_amd64.deb ... 158s Unpacking libpango-1.0-0:amd64 (1.56.2-1) ... 158s Selecting previously unselected package libpangoft2-1.0-0:amd64. 158s Preparing to unpack .../085-libpangoft2-1.0-0_1.56.2-1_amd64.deb ... 158s Unpacking libpangoft2-1.0-0:amd64 (1.56.2-1) ... 158s Selecting previously unselected package libpangocairo-1.0-0:amd64. 158s Preparing to unpack .../086-libpangocairo-1.0-0_1.56.2-1_amd64.deb ... 158s Unpacking libpangocairo-1.0-0:amd64 (1.56.2-1) ... 158s Selecting previously unselected package libpaper2:amd64. 158s Preparing to unpack .../087-libpaper2_2.2.5-0.3_amd64.deb ... 158s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 158s Selecting previously unselected package libpaper-utils. 158s Preparing to unpack .../088-libpaper-utils_2.2.5-0.3_amd64.deb ... 158s Unpacking libpaper-utils (2.2.5-0.3) ... 158s Selecting previously unselected package libsm6:amd64. 158s Preparing to unpack .../089-libsm6_2%3a1.2.4-1_amd64.deb ... 158s Unpacking libsm6:amd64 (2:1.2.4-1) ... 158s Selecting previously unselected package libtcl8.6:amd64. 158s Preparing to unpack .../090-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 158s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 158s Selecting previously unselected package libxft2:amd64. 158s Preparing to unpack .../091-libxft2_2.3.6-1build1_amd64.deb ... 158s Unpacking libxft2:amd64 (2.3.6-1build1) ... 158s Selecting previously unselected package libxss1:amd64. 158s Preparing to unpack .../092-libxss1_1%3a1.2.3-1build3_amd64.deb ... 158s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 158s Selecting previously unselected package libtk8.6:amd64. 158s Preparing to unpack .../093-libtk8.6_8.6.16-1_amd64.deb ... 158s Unpacking libtk8.6:amd64 (8.6.16-1) ... 158s Selecting previously unselected package libudunits2-data. 158s Preparing to unpack .../094-libudunits2-data_2.2.28-7build1_all.deb ... 158s Unpacking libudunits2-data (2.2.28-7build1) ... 158s Selecting previously unselected package libudunits2-0. 158s Preparing to unpack .../095-libudunits2-0_2.2.28-7build1_amd64.deb ... 158s Unpacking libudunits2-0 (2.2.28-7build1) ... 158s Selecting previously unselected package libxt6t64:amd64. 158s Preparing to unpack .../096-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 158s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 158s Selecting previously unselected package zip. 158s Preparing to unpack .../097-zip_3.0-14ubuntu2_amd64.deb ... 158s Unpacking zip (3.0-14ubuntu2) ... 158s Selecting previously unselected package unzip. 158s Preparing to unpack .../098-unzip_6.0-28ubuntu6_amd64.deb ... 158s Unpacking unzip (6.0-28ubuntu6) ... 158s Selecting previously unselected package xdg-utils. 158s Preparing to unpack .../099-xdg-utils_1.2.1-2ubuntu1_all.deb ... 158s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 158s Selecting previously unselected package r-base-core. 158s Preparing to unpack .../100-r-base-core_4.4.3-1_amd64.deb ... 158s Unpacking r-base-core (4.4.3-1) ... 159s Selecting previously unselected package r-cran-littler. 159s Preparing to unpack .../101-r-cran-littler_0.3.20-2_amd64.deb ... 159s Unpacking r-cran-littler (0.3.20-2) ... 159s Selecting previously unselected package littler. 159s Preparing to unpack .../102-littler_0.3.20-2_all.deb ... 159s Unpacking littler (0.3.20-2) ... 159s Selecting previously unselected package r-cran-abind. 159s Preparing to unpack .../103-r-cran-abind_1.4-8-1_all.deb ... 159s Unpacking r-cran-abind (1.4-8-1) ... 159s Selecting previously unselected package r-cran-mass. 159s Preparing to unpack .../104-r-cran-mass_7.3-64-1_amd64.deb ... 159s Unpacking r-cran-mass (7.3-64-1) ... 159s Selecting previously unselected package r-cran-class. 159s Preparing to unpack .../105-r-cran-class_7.3-23-1_amd64.deb ... 159s Unpacking r-cran-class (7.3-23-1) ... 159s Selecting previously unselected package r-cran-proxy. 159s Preparing to unpack .../106-r-cran-proxy_0.4-27-1_amd64.deb ... 159s Unpacking r-cran-proxy (0.4-27-1) ... 159s Selecting previously unselected package r-cran-e1071. 159s Preparing to unpack .../107-r-cran-e1071_1.7-16-1_amd64.deb ... 159s Unpacking r-cran-e1071 (1.7-16-1) ... 159s Selecting previously unselected package r-cran-kernsmooth. 159s Preparing to unpack .../108-r-cran-kernsmooth_2.23-26-1_amd64.deb ... 159s Unpacking r-cran-kernsmooth (2.23-26-1) ... 159s Selecting previously unselected package r-cran-classint. 159s Preparing to unpack .../109-r-cran-classint_0.4-11+dfsg-1_amd64.deb ... 159s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 159s Selecting previously unselected package r-cran-cli. 159s Preparing to unpack .../110-r-cran-cli_3.6.4-1_amd64.deb ... 159s Unpacking r-cran-cli (3.6.4-1) ... 159s Selecting previously unselected package r-cran-codetools. 159s Preparing to unpack .../111-r-cran-codetools_0.2-20-1_all.deb ... 159s Unpacking r-cran-codetools (0.2-20-1) ... 159s Selecting previously unselected package r-cran-colorspace. 159s Preparing to unpack .../112-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 159s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 159s Selecting previously unselected package r-cran-dbi. 159s Preparing to unpack .../113-r-cran-dbi_1.2.3-1_all.deb ... 159s Unpacking r-cran-dbi (1.2.3-1) ... 159s Selecting previously unselected package r-cran-digest. 159s Preparing to unpack .../114-r-cran-digest_0.6.37-1_amd64.deb ... 159s Unpacking r-cran-digest (0.6.37-1) ... 159s Selecting previously unselected package r-cran-dotcall64. 159s Preparing to unpack .../115-r-cran-dotcall64_1.2-1_amd64.deb ... 159s Unpacking r-cran-dotcall64 (1.2-1) ... 159s Selecting previously unselected package r-cran-fansi. 159s Preparing to unpack .../116-r-cran-fansi_1.0.5-1_amd64.deb ... 159s Unpacking r-cran-fansi (1.0.5-1) ... 159s Selecting previously unselected package r-cran-farver. 159s Preparing to unpack .../117-r-cran-farver_2.1.2-1_amd64.deb ... 159s Unpacking r-cran-farver (2.1.2-1) ... 160s Selecting previously unselected package r-cran-pkgkitten. 160s Preparing to unpack .../118-r-cran-pkgkitten_0.2.4-1_all.deb ... 160s Unpacking r-cran-pkgkitten (0.2.4-1) ... 160s Selecting previously unselected package r-cran-rcpp. 160s Preparing to unpack .../119-r-cran-rcpp_1.0.14-1_amd64.deb ... 160s Unpacking r-cran-rcpp (1.0.14-1) ... 160s Selecting previously unselected package r-cran-spam. 160s Preparing to unpack .../120-r-cran-spam_2.11-1-1_amd64.deb ... 160s Unpacking r-cran-spam (2.11-1-1) ... 160s Selecting previously unselected package r-cran-viridislite. 160s Preparing to unpack .../121-r-cran-viridislite_0.4.2-2_all.deb ... 160s Unpacking r-cran-viridislite (0.4.2-2) ... 160s Selecting previously unselected package r-cran-maps. 160s Preparing to unpack .../122-r-cran-maps_3.4.2.1-1_amd64.deb ... 160s Unpacking r-cran-maps (3.4.2.1-1) ... 160s Selecting previously unselected package r-cran-fields. 160s Preparing to unpack .../123-r-cran-fields_16.3.1-1_amd64.deb ... 160s Unpacking r-cran-fields (16.3.1-1) ... 160s Selecting previously unselected package r-cran-fnn. 160s Preparing to unpack .../124-r-cran-fnn_1.1.4.1-1_amd64.deb ... 160s Unpacking r-cran-fnn (1.1.4.1-1) ... 160s Selecting previously unselected package r-cran-globals. 160s Preparing to unpack .../125-r-cran-globals_0.16.3-1_all.deb ... 160s Unpacking r-cran-globals (0.16.3-1) ... 160s Selecting previously unselected package r-cran-listenv. 160s Preparing to unpack .../126-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 160s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 160s Selecting previously unselected package r-cran-parallelly. 160s Preparing to unpack .../127-r-cran-parallelly_1.42.0-1_amd64.deb ... 160s Unpacking r-cran-parallelly (1.42.0-1) ... 160s Selecting previously unselected package r-cran-future. 160s Preparing to unpack .../128-r-cran-future_1.34.0+dfsg-1_all.deb ... 160s Unpacking r-cran-future (1.34.0+dfsg-1) ... 160s Selecting previously unselected package r-cran-future.apply. 160s Preparing to unpack .../129-r-cran-future.apply_1.11.3+dfsg-1_all.deb ... 160s Unpacking r-cran-future.apply (1.11.3+dfsg-1) ... 160s Selecting previously unselected package r-cran-glue. 160s Preparing to unpack .../130-r-cran-glue_1.8.0-1_amd64.deb ... 160s Unpacking r-cran-glue (1.8.0-1) ... 160s Selecting previously unselected package r-cran-rlang. 160s Preparing to unpack .../131-r-cran-rlang_1.1.5-1_amd64.deb ... 160s Unpacking r-cran-rlang (1.1.5-1) ... 160s Selecting previously unselected package r-cran-lifecycle. 160s Preparing to unpack .../132-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 160s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 160s Selecting previously unselected package r-cran-gtable. 160s Preparing to unpack .../133-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 160s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 160s Selecting previously unselected package r-cran-isoband. 160s Preparing to unpack .../134-r-cran-isoband_0.2.7-1_amd64.deb ... 160s Unpacking r-cran-isoband (0.2.7-1) ... 160s Selecting previously unselected package r-cran-lattice. 160s Preparing to unpack .../135-r-cran-lattice_0.22-6-1_amd64.deb ... 160s Unpacking r-cran-lattice (0.22-6-1) ... 160s Selecting previously unselected package r-cran-nlme. 160s Preparing to unpack .../136-r-cran-nlme_3.1.167-1_amd64.deb ... 160s Unpacking r-cran-nlme (3.1.167-1) ... 160s Selecting previously unselected package r-cran-matrix. 160s Preparing to unpack .../137-r-cran-matrix_1.7-3-1_amd64.deb ... 160s Unpacking r-cran-matrix (1.7-3-1) ... 161s Selecting previously unselected package r-cran-mgcv. 161s Preparing to unpack .../138-r-cran-mgcv_1.9-1-1_amd64.deb ... 161s Unpacking r-cran-mgcv (1.9-1-1) ... 161s Selecting previously unselected package r-cran-labeling. 161s Preparing to unpack .../139-r-cran-labeling_0.4.3-1_all.deb ... 161s Unpacking r-cran-labeling (0.4.3-1) ... 161s Selecting previously unselected package r-cran-munsell. 161s Preparing to unpack .../140-r-cran-munsell_0.5.1-1_all.deb ... 161s Unpacking r-cran-munsell (0.5.1-1) ... 161s Selecting previously unselected package r-cran-r6. 161s Preparing to unpack .../141-r-cran-r6_2.6.1-1_all.deb ... 161s Unpacking r-cran-r6 (2.6.1-1) ... 161s Selecting previously unselected package r-cran-rcolorbrewer. 161s Preparing to unpack .../142-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 161s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 161s Selecting previously unselected package r-cran-scales. 161s Preparing to unpack .../143-r-cran-scales_1.3.0-1_all.deb ... 161s Unpacking r-cran-scales (1.3.0-1) ... 161s Selecting previously unselected package r-cran-magrittr. 161s Preparing to unpack .../144-r-cran-magrittr_2.0.3-1_amd64.deb ... 161s Unpacking r-cran-magrittr (2.0.3-1) ... 161s Selecting previously unselected package r-cran-utf8. 161s Preparing to unpack .../145-r-cran-utf8_1.2.4-1_amd64.deb ... 161s Unpacking r-cran-utf8 (1.2.4-1) ... 161s Selecting previously unselected package r-cran-vctrs. 161s Preparing to unpack .../146-r-cran-vctrs_0.6.5-1_amd64.deb ... 161s Unpacking r-cran-vctrs (0.6.5-1) ... 161s Selecting previously unselected package r-cran-pillar. 161s Preparing to unpack .../147-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 161s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 161s Selecting previously unselected package r-cran-pkgconfig. 161s Preparing to unpack .../148-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 161s Unpacking r-cran-pkgconfig 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Setting up r-cran-gstat (2.1-3-1) ... 165s Setting up r-cran-terra (1.8-29-1) ... 165s Setting up r-cran-raster (3.6-31-1) ... 165s Processing triggers for install-info (7.1.1-1) ... 166s Processing triggers for libc-bin (2.41-1ubuntu2) ... 166s Processing triggers for man-db (2.13.0-1) ... 167s autopkgtest [22:14:45]: test run-unit-test: [----------------------- 168s BEGIN TEST allier.R 168s 168s R version 4.4.3 (2025-02-28) -- "Trophy Case" 168s Copyright (C) 2025 The R Foundation for Statistical Computing 168s Platform: x86_64-pc-linux-gnu 168s 168s R is free software and comes with ABSOLUTELY NO WARRANTY. 168s You are welcome to redistribute it under certain conditions. 168s Type 'license()' or 'licence()' for distribution details. 168s 168s R is a collaborative project with many contributors. 168s Type 'contributors()' for more information and 168s 'citation()' on how to cite R or R packages in publications. 168s 168s Type 'demo()' for some demos, 'help()' for on-line help, or 168s 'help.start()' for an HTML browser interface to help. 168s Type 'q()' to quit R. 168s 168s > # Sytze de Bruin's post to r-sig-geo, Nov 16, 2015: 168s > library(sp) 168s > library(gstat) 168s > 168s > # some data 168s > x <- c(215, 330, 410, 470, 545) 168s > y <- c(230, 310, 330, 340, 365) 168s > fc <- c(0.211, 0.251, 0.281, 0.262, 0.242) 168s > por <- c(0.438, 0.457, 0.419, 0.430, 0.468) 168s > Allier <- data.frame(x, y, fc, por) 168s > coordinates(Allier) = ~x+y 168s > 168s > # gstat object for co-kriging using linear model of co-regionalization 168s > g <- gstat(id=c("fc"), formula=fc~1, data=Allier, 168s + model=vgm(0.00247, "Sph", 480, 0.00166)) 168s > g <- gstat(g, id="por", formula=por~1, data=Allier, 168s + model=vgm(0.00239, "Sph", 480, 0.00118)) 168s > g <- gstat(g, id=c("fc", "por"), 168s + model=vgm(0.00151, "Sph", 480, -0.00124)) 168s > 168s > # predict at single point 168s > g$set = list(choleski = 0) # LDL' 168s > A <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 168s Linear Model of Coregionalization found. Good. 168s [using ordinary cokriging] 168s we're at location X: 450 Y: 350 Z: 0 168s zero block size 168s we're at point X: 450 Y: 350 Z: 0 168s 168s # X: 168s #Matrix: 10 by 2 168s rbind( 168s c( 1.000000, 0.000000), # row 1 168s c( 1.000000, 0.000000), # row 2 168s c( 1.000000, 0.000000), # row 3 168s c( 1.000000, 0.000000), # row 4 168s c( 1.000000, 0.000000), # row 5 168s c( 0.000000, 1.000000), # row 6 168s c( 0.000000, 1.000000), # row 7 168s c( 0.000000, 1.000000), # row 8 168s c( 0.000000, 1.000000), # row 9 168s c( 0.000000, 1.000000) # row 10 168s ) 168s [using generalized covariances: max_val - semivariance()] 168s # Covariances (x_i, x_j) matrix C (upper triangle): 168s #Matrix: 10 by 10 168s rbind( 168s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 168s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 168s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 168s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 168s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 168s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 168s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 168s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 168s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 168s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 168s ) 168s 168s # glm->C, LDL' decomposed:: 168s #Matrix: 10 by 10 168s rbind( 168s c( 0.003399, 0.372269, 0.208612, 0.127967, 0.016746, -0.025847, 0.223862, 0.148767, 0.104047, 0.038371), # row 1 168s c( 0.000000, 0.002661, 0.483725, 0.327484, 0.153742, 0.233021, -0.125118, 0.262410, 0.219271, 0.150536), # row 2 168s c( 0.000000, 0.000000, 0.002276, 0.540203, 0.303585, 0.058071, 0.314376, -0.175899, 0.295181, 0.243817), # row 3 168s c( 0.000000, 0.000000, 0.000000, 0.002484, 0.483068, 0.000301, 0.115816, 0.377362, -0.115338, 0.319418), # row 4 168s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.003690, -0.038142, 0.000474, 0.120915, 0.377730, 0.075630), # row 5 168s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003019, 0.354325, 0.235465, 0.164684, 0.060733), # row 6 168s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002623, 0.415337, 0.347059, 0.238266), # row 7 168s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002458, 0.467207, 0.385909), # row 8 168s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002658, 0.505569), # row 9 168s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003570) # row 10 168s ) 168s 168s # X'C-1 X: 168s #Matrix: 2 by 2 168s rbind( 168s c(665.433994, -232.313340), # row 1 168s c(-232.313340, 729.440848) # row 2 168s ) 168s 168s # beta: 168s #Vector: dim: 2 168s c( 0.244216, 0.440933) 168s # Cov(beta), (X'C-1 X)-1: 168s #Matrix: 2 by 2 168s rbind( 168s c( 0.001691, 0.000538), # row 1 168s c( 0.000538, 0.001542) # row 2 168s ) 168s 168s # Corr(beta): 168s #Matrix: 2 by 2 168s rbind( 168s c( 1.000000, 0.333447), # row 1 168s c( 0.333447, 1.000000) # row 2 168s ) 168s 168s # X0 (X values at prediction location x0): 168s #Matrix: 2 by 2 168s rbind( 168s c( 1.000000, 0.000000), # row 1 168s c( 0.000000, 1.000000) # row 2 168s ) 168s 168s # BLUE(mu), E(y(x0)) = X0'beta: 168s #Vector: dim: 2 168s c( 0.244216, 0.440933) 168s # Covariances (x_i, x_0), C0: 168s #Matrix: 10 by 2 168s rbind( 168s c( 0.000638, 0.000390), # row 1 168s c( 0.001516, 0.000927), # row 2 168s c( 0.002126, 0.001300), # row 3 168s c( 0.002298, 0.001405), # row 4 168s c( 0.001738, 0.001062), # row 5 168s c( 0.000390, 0.000618), # row 6 168s c( 0.000927, 0.001467), # row 7 168s c( 0.001300, 0.002057), # row 8 168s c( 0.001405, 0.002223), # row 9 168s c( 0.001062, 0.001681) # row 10 168s ) 168s 168s # C-1 C0: 168s #Matrix: 10 by 2 168s rbind( 168s c( 0.008927, -0.017995), # row 1 168s c( 0.061935, -0.028550), # row 2 168s c( 0.225195, 0.078344), # row 3 168s c( 0.356735, 0.190177), # row 4 168s c( 0.094128, -0.023136), # row 5 168s c(-0.021119, 0.004935), # row 6 168s c(-0.033508, 0.055601), # row 7 168s c( 0.091947, 0.242576), # row 8 168s c( 0.223200, 0.398927), # row 9 168s c(-0.027153, 0.088995) # row 10 168s ) 168s 168s # [a] Cov_ij(B,B) or Cov_ij(0,0): 168s #Matrix: 2 by 2 168s rbind( 168s c( 0.004130, 0.000270), # row 1 168s c( 0.000270, 0.003570) # row 2 168s ) 168s 168s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 168s #Matrix: 2 by 2 168s rbind( 168s c( 0.000129, -0.000107), # row 1 168s c(-0.000107, 0.000089) # row 2 168s ) 168s 168s # [b] c0'C-1 c0: 168s #Matrix: 2 by 2 168s rbind( 168s c( 0.001926, 0.001532), # row 1 168s c( 0.001532, 0.001931) # row 2 168s ) 168s 168s # Best Linear Unbiased Predictor: 168s #Vector: dim: 2 168s c( 0.253090, 0.441258) 168s # MSPE ([a]-[b]+[c]): 168s #Matrix: 2 by 2 168s rbind( 168s c( 0.002332, -0.001369), # row 1 168s c(-0.001369, 0.001729) # row 2 168s ) 168s 168s # kriging weights: 168s #Matrix: 10 by 2 168s rbind( 168s c( 0.071177, -0.064988), # row 1 168s c( 0.108451, -0.066123), # row 2 168s c( 0.268160, 0.043141), # row 3 168s c( 0.401959, 0.153312), # row 4 168s c( 0.150253, -0.065342), # row 5 168s c(-0.076273, 0.056759), # row 6 168s c(-0.077605, 0.093781), # row 7 168s c( 0.050632, 0.277731), # row 8 168s c( 0.179933, 0.435972), # row 9 168s c(-0.076688, 0.135756) # row 10 168s ) 168s 168s 168s > g$set = list(choleski = 1) # Choleski 168s > B <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 168s Linear Model of Coregionalization found. Good. 168s [using ordinary cokriging] 168s we're at location X: 450 Y: 350 Z: 0 168s zero block size 168s we're at point X: 450 Y: 350 Z: 0 168s 168s # X: 168s #Matrix: 10 by 2 168s rbind( 168s c( 1.000000, 0.000000), # row 1 168s c( 1.000000, 0.000000), # row 2 168s c( 1.000000, 0.000000), # row 3 168s c( 1.000000, 0.000000), # row 4 168s c( 1.000000, 0.000000), # row 5 168s c( 0.000000, 1.000000), # row 6 168s c( 0.000000, 1.000000), # row 7 168s c( 0.000000, 1.000000), # row 8 168s c( 0.000000, 1.000000), # row 9 168s c( 0.000000, 1.000000) # row 10 168s ) 168s [using generalized covariances: max_val - semivariance()] 168s # Covariances (x_i, x_j) matrix C (upper triangle): 168s #Matrix: 10 by 10 168s rbind( 168s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 168s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 168s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 168s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 168s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 168s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 168s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 168s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 168s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 168s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 168s ) 168s 168s # glm->C, Choleski decomposed:: 168s #Matrix: 10 by 10 168s rbind( 168s c( 0.064265, 0.022086, 0.013942, 0.008801, 0.003487, 0.004201, 0.013502, 0.008523, 0.005380, 0.002132), # row 1 168s c( 0.000000, 0.060351, 0.025382, 0.019938, 0.013290, 0.012840, -0.000468, 0.015517, 0.012189, 0.008125), # row 2 168s c( 0.000000, 0.000000, 0.057370, 0.023954, 0.018091, 0.002846, 0.016530, -0.004230, 0.014644, 0.011059), # row 3 168s c( 0.000000, 0.000000, 0.000000, 0.055509, 0.020471, -0.000277, 0.006286, 0.016960, -0.006686, 0.012514), # row 4 168s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.056523, -0.001665, 0.001218, 0.006437, 0.014711, -0.005337), # row 5 168s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.058108, 0.022018, 0.011347, 0.006008, 0.001147), # row 6 168s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.050877, 0.027084, 0.018381, 0.010720), # row 7 168s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.045247, 0.026914, 0.017658), # row 8 168s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.042645, 0.023811), # row 9 168s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.046872) # row 10 168s ) 168s 168s # X'C-1 X: 168s #Matrix: 2 by 2 168s rbind( 168s c(665.433994, -232.313340), # row 1 168s c(-232.313340, 729.440848) # row 2 168s ) 168s 168s # beta: 168s #Vector: dim: 2 168s c( 0.244216, 0.440933) 168s # Cov(beta), (X'C-1 X)-1: 168s #Matrix: 2 by 2 168s rbind( 168s c( 0.001691, 0.000538), # row 1 168s c( 0.000538, 0.001542) # row 2 168s ) 168s 168s # Corr(beta): 168s #Matrix: 2 by 2 168s rbind( 168s c( 1.000000, 0.333447), # row 1 168s c( 0.333447, 1.000000) # row 2 168s ) 168s 168s # X0 (X values at prediction location x0): 168s #Matrix: 2 by 2 168s rbind( 168s c( 1.000000, 0.000000), # row 1 168s c( 0.000000, 1.000000) # row 2 168s ) 168s 168s # BLUE(mu), E(y(x0)) = X0'beta: 168s #Vector: dim: 2 168s c( 0.244216, 0.440933) 168s # Covariances (x_i, x_0), C0: 168s #Matrix: 10 by 2 168s rbind( 168s c( 0.000638, 0.000390), # row 1 168s c( 0.001516, 0.000927), # row 2 168s c( 0.002126, 0.001300), # row 3 168s c( 0.002298, 0.001405), # row 4 168s c( 0.001738, 0.001062), # row 5 168s c( 0.000390, 0.000618), # row 6 168s c( 0.000927, 0.001467), # row 7 168s c( 0.001300, 0.002057), # row 8 168s c( 0.001405, 0.002223), # row 9 168s c( 0.001062, 0.001681) # row 10 168s ) 168s 168s # C-1 C0: 168s #Matrix: 10 by 2 168s rbind( 168s c( 0.008927, -0.017995), # row 1 168s c( 0.061935, -0.028550), # row 2 168s c( 0.225195, 0.078344), # row 3 168s c( 0.356735, 0.190177), # row 4 168s c( 0.094128, -0.023136), # row 5 168s c(-0.021119, 0.004935), # row 6 168s c(-0.033508, 0.055601), # row 7 168s c( 0.091947, 0.242576), # row 8 168s c( 0.223200, 0.398927), # row 9 168s c(-0.027153, 0.088995) # row 10 168s ) 168s 168s # [a] Cov_ij(B,B) or Cov_ij(0,0): 168s #Matrix: 2 by 2 168s rbind( 168s c( 0.004130, 0.000270), # row 1 168s c( 0.000270, 0.003570) # row 2 168s ) 168s 168s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 168s #Matrix: 2 by 2 168s rbind( 168s c( 0.000129, -0.000107), # row 1 168s c(-0.000107, 0.000089) # row 2 168s ) 168s 168s # [b] c0'C-1 c0: 168s #Matrix: 2 by 2 168s rbind( 168s c( 0.001926, 0.001532), # row 1 168s c( 0.001532, 0.001931) # row 2 168s ) 168s 168s # Best Linear Unbiased Predictor: 168s #Vector: dim: 2 168s c( 0.253090, 0.441258) 168s # MSPE ([a]-[b]+[c]): 168s #Matrix: 2 by 2 168s rbind( 168s c( 0.002332, -0.001369), # row 1 168s c(-0.001369, 0.001729) # row 2 168s ) 168s 168s # kriging weights: 168s #Matrix: 10 by 2 168s rbind( 168s c( 0.071177, -0.064988), # row 1 168s c( 0.108451, -0.066123), # row 2 168s c( 0.268160, 0.043141), # row 3 168s c( 0.401959, 0.153312), # row 4 168s c( 0.150253, -0.065342), # row 5 168s c(-0.076273, 0.056759), # row 6 168s c(-0.077605, 0.093781), # row 7 168s c( 0.050632, 0.277731), # row 8 168s c( 0.179933, 0.435972), # row 9 168s c(-0.076688, 0.135756) # row 10 168s ) 168s 168s 168s > all.equal(A,B) 168s [1] TRUE 168s > 168s > # TRUE 168s > 168s BEGIN TEST blockkr.R 168s 168s R version 4.4.3 (2025-02-28) -- "Trophy Case" 168s Copyright (C) 2025 The R Foundation for Statistical Computing 168s Platform: x86_64-pc-linux-gnu 168s 168s R is free software and comes with ABSOLUTELY NO WARRANTY. 168s You are welcome to redistribute it under certain conditions. 168s Type 'license()' or 'licence()' for distribution details. 168s 168s R is a collaborative project with many contributors. 168s Type 'contributors()' for more information and 168s 'citation()' on how to cite R or R packages in publications. 168s 168s Type 'demo()' for some demos, 'help()' for on-line help, or 168s 'help.start()' for an HTML browser interface to help. 168s Type 'q()' to quit R. 168s 169s > library(sp) 169s > data(meuse) 169s > coordinates(meuse) = c("x", "y") 169s > new.locs <- SpatialPoints(data.frame( 169s + x = c(181170, 180310, 180205, 178673, 178770, 178270), 169s + y = c(333250, 332189, 331707, 330066, 330675, 331075))) 169s > library(gstat) 169s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 169s + block = c(40,40), nmax = 40) 169s [using ordinary kriging] 169s coordinates var1.pred var1.var 169s 1 (181170, 333250) 268.7576 19447.67 169s 2 (180310, 332189) 663.4915 16991.33 169s 3 (180205, 331707) 251.4606 21579.71 169s 4 (178673, 330066) 532.5776 73807.91 169s 5 (178770, 330675) 664.4039 23589.17 169s 6 (178270, 331075) 565.5436 155113.23 169s > 169s > new.locs <- SpatialPoints(data.frame(x = c(181170), y = c(333250))) 169s > 169s > disc = c(-15,-5,5,15) 169s > block.irreg <- data.frame(expand.grid(x = disc, y = disc)) 169s > block.irreg 169s x y 169s 1 -15 -15 169s 2 -5 -15 169s 3 5 -15 169s 4 15 -15 169s 5 -15 -5 169s 6 -5 -5 169s 7 5 -5 169s 8 15 -5 169s 9 -15 5 169s 10 -5 5 169s 11 5 5 169s 12 15 5 169s 13 -15 15 169s 14 -5 15 169s 15 5 15 169s 16 15 15 169s > 169s > # first disable default Gaussian quadrature used for block integration, by 169s > # setting nblockdiscr explicitly: 169s > krige(zinc ~ 1, meuse, new.locs, model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 169s + block = c(40,40), nmax = 40, set = list(nblockdiscr=4)) 169s [using ordinary kriging] 169s coordinates var1.pred var1.var 169s 1 (181170, 333250) 268.7324 19568.76 169s > # now pass the same block discretization as block.irreg: 169s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 169s + block = block.irreg, nmax = 40) 169s [using ordinary kriging] 169s coordinates var1.pred var1.var 169s 1 (181170, 333250) 268.7324 19568.76 169s > # check weights argument: 169s > block.irreg <- data.frame(expand.grid(x = disc, y = disc), weights = rep(1/16, 16)) 169s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 169s + block = block.irreg, nmax = 40) 169s [using ordinary kriging] 169s coordinates var1.pred var1.var 169s 1 (181170, 333250) 268.7324 19568.76 169s > 169s BEGIN TEST covtable.R 169s 169s R version 4.4.3 (2025-02-28) -- "Trophy Case" 169s Copyright (C) 2025 The R Foundation for Statistical Computing 169s Platform: x86_64-pc-linux-gnu 169s 169s R is free software and comes with ABSOLUTELY NO WARRANTY. 169s You are welcome to redistribute it under certain conditions. 169s Type 'license()' or 'licence()' for distribution details. 169s 169s R is a collaborative project with many contributors. 169s Type 'contributors()' for more information and 169s 'citation()' on how to cite R or R packages in publications. 169s 169s Type 'demo()' for some demos, 'help()' for on-line help, or 169s 'help.start()' for an HTML browser interface to help. 169s Type 'q()' to quit R. 169s 169s > library(gstat) 170s > d=expand.grid(x=c(-.5,.5), y=c(-.5,.5)) 170s > d$z=1:4 170s > vv=vgm(model = "Tab", covtable = 170s + variogramLine(vgm(1, "Sph", 1), 1, n=1e4,min = 0, covariance = TRUE)) 170s > vv 170s model psill maxdist 170s 1 Tab NA 1 170s covariance table: 170s [1] 1.0000000 0.7039712 0.4319496 0.2080384 0.0560108 0.0000000 170s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vgm(1, "Sph", 1)) 170s [using ordinary kriging] 170s x y var1.pred var1.var 170s 1 0 0 2.5 1.017767 170s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vv) 170s [using ordinary kriging] 170s x y var1.pred var1.var 170s 1 0 0 2.5 1.017863 170s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vgm(1, "Sph", 1)) 170s [using ordinary kriging] 170s x y var1.pred var1.var 170s 1 0 0 1.5 1.267767 170s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vv) 170s [using ordinary kriging] 170s x y var1.pred var1.var 170s 1 0 0 1.5 1.267863 170s > 170s BEGIN TEST cv.R 170s 170s R version 4.4.3 (2025-02-28) -- "Trophy Case" 170s Copyright (C) 2025 The R Foundation for Statistical Computing 170s Platform: x86_64-pc-linux-gnu 170s 170s R is free software and comes with ABSOLUTELY NO WARRANTY. 170s You are welcome to redistribute it under certain conditions. 170s Type 'license()' or 'licence()' for distribution details. 170s 170s R is a collaborative project with many contributors. 170s Type 'contributors()' for more information and 170s 'citation()' on how to cite R or R packages in publications. 170s 170s Type 'demo()' for some demos, 'help()' for on-line help, or 170s 'help.start()' for an HTML browser interface to help. 170s Type 'q()' to quit R. 170s 170s > # try bivariate cokriging; cross validate first variable 170s > library(sp) 170s > data(meuse) 170s > library(gstat) 171s > g=gstat(NULL, "log-zinc", log(zinc)~1, ~x+y, meuse, nmax=10) 171s > g=gstat(g, "log-lead", log(lead)~1, ~x+y, meuse, nmax=10) 171s > g=gstat(g, "log-copper", log(copper)~1, ~x+y, meuse, nmax=10) 171s > v=variogram(g) 171s > g=gstat(g, model=vgm(1, "Sph", 1000), fill.all=T) 171s > g=fit.lmc(v, g) 171s > g 171s data: 171s log-zinc : formula = log(zinc)`~`1 ; data dim = 155 x 12 nmax = 10 171s log-lead : formula = log(lead)`~`1 ; data dim = 155 x 12 nmax = 10 171s log-copper : formula = log(copper)`~`1 ; data dim = 155 x 12 nmax = 10 171s variograms: 171s model psill range 171s log-zinc Sph 0.7132435 1000 171s log-lead Sph 0.6133020 1000 171s log-copper Sph 0.3634211 1000 171s log-zinc.log-lead Sph 0.6367012 1000 171s log-zinc.log-copper Sph 0.4570044 1000 171s log-lead.log-copper Sph 0.3934910 1000 171s ~x + y 171s > set.seed(13131) 171s > summary(gstat.cv(g, remove.all=TRUE, nfold=5)) 171s Intrinsic Correlation found. Good. 171s [using ordinary cokriging] 171s Intrinsic Correlation found. Good. 171s [using ordinary cokriging] 171s Intrinsic Correlation found. Good. 171s [using ordinary cokriging] 171s Intrinsic Correlation found. Good. 171s [using ordinary cokriging] 171s Intrinsic Correlation found. Good. 171s [using ordinary cokriging] 171s log.zinc.pred log.zinc.var observed residual 171s Min. :4.779 Min. :0.05426 Min. :4.727 Min. :-1.317697 171s 1st Qu.:5.396 1st Qu.:0.10872 1st Qu.:5.288 1st Qu.:-0.230224 171s Median :5.858 Median :0.13745 Median :5.787 Median :-0.034374 171s Mean :5.895 Mean :0.15249 Mean :5.886 Mean :-0.009094 171s 3rd Qu.:6.367 3rd Qu.:0.18303 3rd Qu.:6.514 3rd Qu.: 0.244075 171s Max. :7.358 Max. :0.60571 Max. :7.517 Max. : 1.414147 171s zscore fold x y 171s Min. :-3.35764 Min. :1.000 Min. :178605 Min. :329714 171s 1st Qu.:-0.58683 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 171s Median :-0.10755 Median :3.000 Median :179991 Median :331633 171s Mean :-0.02766 Mean :2.852 Mean :180005 Mean :331635 171s 3rd Qu.: 0.70691 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 171s Max. : 3.43370 Max. :5.000 Max. :181390 Max. :333611 171s > summary(gstat.cv(g, remove.all=FALSE, nfold=5)) 171s Warning message: 171s In checkNames(value) : 171s attempt to set invalid names: this may lead to problems later on. See ?make.names 171s Intrinsic Correlation found. Good. 171s [using ordinary cokriging] 171s Intrinsic Correlation found. Good. 171s [using ordinary cokriging] 171s Intrinsic Correlation found. Good. 171s [using ordinary cokriging] 171s Intrinsic Correlation found. Good. 171s [using ordinary cokriging] 171s Intrinsic Correlation found. Good. 171s [using ordinary cokriging] 171s log.zinc.pred log.zinc.var observed residual 171s Min. :4.644 Min. :0.002371 Min. :4.727 Min. :-0.4190977 171s 1st Qu.:5.308 1st Qu.:0.004975 1st Qu.:5.288 1st Qu.:-0.0773273 171s Median :5.777 Median :0.005875 Median :5.787 Median : 0.0006165 171s Mean :5.883 Mean :0.006609 Mean :5.886 Mean : 0.0026164 171s 3rd Qu.:6.422 3rd Qu.:0.007419 3rd Qu.:6.514 3rd Qu.: 0.0825770 171s Max. :7.676 Max. :0.027247 Max. :7.517 Max. : 0.4659503 171s zscore fold x y 171s Min. :-4.793253 Min. :1.000 Min. :178605 Min. :329714 171s 1st Qu.:-1.080725 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 171s Median : 0.007242 Median :3.000 Median :179991 Median :331633 171s Mean : 0.050487 Mean :2.974 Mean :180005 Mean :331635 171s 3rd Qu.: 1.117469 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 171s Max. : 6.475831 Max. :5.000 Max. :181390 Max. :333611 171s > 171s Warning message: 171s In checkNames(value) : 171s attempt to set invalid names: this may lead to problems later on. See ?make.names 171s BEGIN TEST cv3d.R 171s 171s R version 4.4.3 (2025-02-28) -- "Trophy Case" 171s Copyright (C) 2025 The R Foundation for Statistical Computing 171s Platform: x86_64-pc-linux-gnu 171s 171s R is free software and comes with ABSOLUTELY NO WARRANTY. 171s You are welcome to redistribute it under certain conditions. 171s Type 'license()' or 'licence()' for distribution details. 171s 171s R is a collaborative project with many contributors. 171s Type 'contributors()' for more information and 171s 'citation()' on how to cite R or R packages in publications. 171s 171s Type 'demo()' for some demos, 'help()' for on-line help, or 171s 'help.start()' for an HTML browser interface to help. 171s Type 'q()' to quit R. 171s 171s > options(digits = 4) 171s > set.seed(1131) 171s > d = data.frame(x=runif(50),y=runif(50),z=runif(50),v=rnorm(50)) 171s > library(gstat) 172s > xx = krige.cv(v~1,~x+y+z,d,model=vgm(1,"Exp",1), verbose=F, set=list(debug=0)) 172s > summary(xx) 172s var1.pred var1.var observed residual 172s Min. :-1.163 Min. :0.116 Min. :-2.240 Min. :-2.1755 172s 1st Qu.:-0.571 1st Qu.:0.175 1st Qu.:-0.876 1st Qu.:-0.7881 172s Median :-0.201 Median :0.192 Median :-0.219 Median : 0.1175 172s Mean :-0.165 Mean :0.208 Mean :-0.142 Mean : 0.0233 172s 3rd Qu.: 0.161 3rd Qu.:0.240 3rd Qu.: 0.500 3rd Qu.: 0.8508 172s Max. : 1.085 Max. :0.426 Max. : 1.857 Max. : 2.5224 172s zscore fold x y 172s Min. :-5.168 Min. : 1.0 Min. :0.0068 Min. :0.0034 172s 1st Qu.:-1.875 1st Qu.:13.2 1st Qu.:0.2397 1st Qu.:0.2466 172s Median : 0.245 Median :25.5 Median :0.4867 Median :0.4525 172s Mean : 0.017 Mean :25.5 Mean :0.4997 Mean :0.4969 172s 3rd Qu.: 2.020 3rd Qu.:37.8 3rd Qu.:0.7473 3rd Qu.:0.7394 172s Max. : 7.354 Max. :50.0 Max. :0.9875 Max. :0.9872 172s z 172s Min. :0.0016 172s 1st Qu.:0.1865 172s Median :0.4485 172s Mean :0.4714 172s 3rd Qu.:0.7240 172s Max. :0.9942 172s > 172s BEGIN TEST fit.R 172s 172s R version 4.4.3 (2025-02-28) -- "Trophy Case" 172s Copyright (C) 2025 The R Foundation for Statistical Computing 172s Platform: x86_64-pc-linux-gnu 172s 172s R is free software and comes with ABSOLUTELY NO WARRANTY. 172s You are welcome to redistribute it under certain conditions. 172s Type 'license()' or 'licence()' for distribution details. 172s 172s R is a collaborative project with many contributors. 172s Type 'contributors()' for more information and 172s 'citation()' on how to cite R or R packages in publications. 172s 172s Type 'demo()' for some demos, 'help()' for on-line help, or 172s 'help.start()' for an HTML browser interface to help. 172s Type 'q()' to quit R. 172s 172s > library(sp) 172s > data(meuse) 172s > library(gstat) 173s > v=variogram(log(zinc)~1,~x+y,meuse,cutoff=500,wi=100) 173s > v$gamma=c(0.5,1,2,3,3) 173s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=TRUE) 173s model psill range 173s 1 Nug 0.000000 0.00 173s 2 Sph 7.878195 1567.77 173s > Warning message: 173s In fit.variogram(v, vgm(1, "Sph", 300, 0), warn.if.neg = TRUE) : 173s partial sill or nugget fixed at zero value 173s fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=FALSE) 173s model psill range 173s 1 Nug 0.000000 0.00 173s 2 Sph 7.878195 1567.77 173s > 173s BEGIN TEST krige0.R 173s 173s R version 4.4.3 (2025-02-28) -- "Trophy Case" 173s Copyright (C) 2025 The R Foundation for Statistical Computing 173s Platform: x86_64-pc-linux-gnu 173s 173s R is free software and comes with ABSOLUTELY NO WARRANTY. 173s You are welcome to redistribute it under certain conditions. 173s Type 'license()' or 'licence()' for distribution details. 173s 173s R is a collaborative project with many contributors. 173s Type 'contributors()' for more information and 173s 'citation()' on how to cite R or R packages in publications. 173s 173s Type 'demo()' for some demos, 'help()' for on-line help, or 173s 'help.start()' for an HTML browser interface to help. 173s Type 'q()' to quit R. 173s 173s > # test -- load data: 173s > library(sp) 173s > data(meuse) 173s > coordinates(meuse) = ~x+y 173s > data(meuse.grid) 173s > gridded(meuse.grid) = ~x+y 173s > 173s > library(gstat) 173s > # test -- idw 173s > meuse.grid$idw <- idw0(zinc~1, meuse, meuse.grid)[,1] 174s > x <- idw(zinc~1, meuse, meuse.grid) 174s [inverse distance weighted interpolation] 174s > all.equal(x$var1.pred, meuse.grid$idw) 174s [1] TRUE 174s > spplot(meuse.grid["idw"],col.regions=bpy.colors()) 174s > v = vgm(1, "Exp", 500) 174s > # test sk: 174s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, beta = 500, computeVar = TRUE) 174s > rownames(x0$pred)=NULL 174s > x <- krige(zinc~1, meuse, meuse.grid, v, beta = 500) 174s [using simple kriging] 174s > all.equal(x$var1.pred, x0$pred[,1]) 174s [1] TRUE 174s > all.equal(x$var1.var, x0$var) 174s [1] TRUE 174s > # test ok: 174s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, computeVar = TRUE) 174s > rownames(x0$pred)=NULL 174s > names(x0$var)=NULL 174s > x <- krige(zinc~1, meuse, meuse.grid, v) 174s [using ordinary kriging] 174s > all.equal(x$var1.pred, x0$pred[,1]) 174s [1] TRUE 174s > all.equal(x$var1.var, x0$var) 174s [1] TRUE 174s > # test uk: 174s > x0 <- krige0(zinc~sqrt(dist), meuse, meuse.grid, v, computeVar = TRUE) 174s > rownames(x0$pred)=NULL 174s > names(x0$var)=NULL 174s > x <- krige(zinc~sqrt(dist), meuse, meuse.grid, v) 174s [using universal kriging] 174s > all.equal(x$var1.pred, x0$pred[,1]) 174s [1] TRUE 174s > all.equal(x$var1.var, x0$var) 174s [1] TRUE 174s > 174s BEGIN TEST line.R 175s 175s R version 4.4.3 (2025-02-28) -- "Trophy Case" 175s Copyright (C) 2025 The R Foundation for Statistical Computing 175s Platform: x86_64-pc-linux-gnu 175s 175s R is free software and comes with ABSOLUTELY NO WARRANTY. 175s You are welcome to redistribute it under certain conditions. 175s Type 'license()' or 'licence()' for distribution details. 175s 175s R is a collaborative project with many contributors. 175s Type 'contributors()' for more information and 175s 'citation()' on how to cite R or R packages in publications. 175s 175s Type 'demo()' for some demos, 'help()' for on-line help, or 175s 'help.start()' for an HTML browser interface to help. 175s Type 'q()' to quit R. 175s 175s > options(digits=5) 175s > library(sp) 175s > data(meuse.grid) 175s > gridded(meuse.grid) = ~x+y 175s > data(meuse) 175s > coordinates(meuse) = ~x+y 175s > 175s > # choose arbitrary line over the grid: 175s > image(meuse.grid["dist"],axes=T) 175s > pp = rbind(c(180000,331000),c(180000,332000),c(181000,333500)) 175s > Sl = SpatialLines(list(Lines(list(Line(pp)), "a"))) 175s > plot(Sl,add=T,col='green') 175s > 175s > # use the default spsample arguments of predict.gstat: 175s > pts=spsample(Sl,n=500,'regular',offset=c(.5,.5)) 175s > plot(pts, pch=3, cex=.2, add=T) 175s > 175s > library(gstat) 175s > v = vgm(.6, "Sph", 900, .06) 175s > out1 = krige(log(zinc)~1, meuse, Sl, v) 175s [using ordinary kriging] 175s > out1 175s An object of class "SpatialLinesDataFrame" 175s Slot "data": 175s x y var1.pred var1.var 175s a 180333 332167 6.1618 0.008025 175s 175s Slot "lines": 175s [[1]] 175s An object of class "Lines" 175s Slot "Lines": 175s [[1]] 175s An object of class "Line" 175s Slot "coords": 175s [,1] [,2] 175s [1,] 180000 331000 175s [2,] 180000 332000 175s [3,] 181000 333500 175s 175s 175s 175s Slot "ID": 175s [1] "a" 175s 175s 175s 175s Slot "bbox": 175s min max 175s x 180000 181000 175s y 331000 333500 175s 175s Slot "proj4string": 175s Coordinate Reference System: 175s Deprecated Proj.4 representation: NA 175s 175s > 175s > points(180333,332167,pch=3,cex=2) 175s > 175s > # use the same line as block discretization, and predict for (0,0) 175s > # (because the block discretizing points are not centered) 175s > out2 = krige(log(zinc)~1, meuse, SpatialPoints(matrix(0,1,2)), v, block=coordinates(pts)) 175s [using ordinary kriging] 175s > out2 175s coordinates var1.pred var1.var 175s 1 (0, 0) 6.1618 0.008025 175s > 175s > compare.krigingLines = function(formula, data, newdata, model) { 175s + out1 = krige(formula, data, newdata, model) 175s + pts = spsample(newdata, n=500, 'regular', offset=.5) 175s + out2 = krige(formula, data, SpatialPoints(matrix(0,1,2)), model, block = coordinates(pts)) 175s + print("difference:") 175s + as.data.frame(out1)[3:4]- as.data.frame(out2)[3:4] 175s + } 175s > 175s > compare.krigingLines(log(zinc)~1, meuse, Sl, v) 175s [using ordinary kriging] 175s [using ordinary kriging] 175s [1] "difference:" 175s var1.pred var1.var 175s a 0 0 175s > 175s > # one line, consisting of two line segments: 175s > pp2 = rbind(c(181000,333500),c(181000,332500)) 175s > Sl2 = SpatialLines(list(Lines(list(Line(pp),Line(pp2)), "a"))) 175s > krige(log(zinc)~1, meuse, Sl2, v) 175s [using ordinary kriging] 175s An object of class "SpatialLinesDataFrame" 175s Slot "data": 175s x y var1.pred var1.var 175s a 180667 332583 6.0424 0.0053191 175s 175s Slot "lines": 175s [[1]] 175s An object of class "Lines" 175s Slot "Lines": 175s [[1]] 175s An object of class "Line" 175s Slot "coords": 175s [,1] [,2] 175s [1,] 180000 331000 175s [2,] 180000 332000 175s [3,] 181000 333500 175s 175s 175s [[2]] 175s An object of class "Line" 175s Slot "coords": 175s [,1] [,2] 175s [1,] 181000 333500 175s [2,] 181000 332500 175s 175s 175s 175s Slot "ID": 175s [1] "a" 175s 175s 175s 175s Slot "bbox": 175s min max 175s x 180000 181000 175s y 331000 333500 175s 175s Slot "proj4string": 175s Coordinate Reference System: 175s Deprecated Proj.4 representation: NA 175s 175s > compare.krigingLines(log(zinc)~1, meuse, Sl2, v) 175s [using ordinary kriging] 176s [using ordinary kriging] 176s [1] "difference:" 176s var1.pred var1.var 176s a 0 0 176s > 176s > # two seperate line segments: 176s > Sl3 = SpatialLines(list(Lines(list(Line(pp)), "a"),Lines(list(Line(pp2)),"b"))) 176s > krige(log(zinc)~1, meuse, Sl3, v) 176s [using ordinary kriging] 176s An object of class "SpatialLinesDataFrame" 176s Slot "data": 176s x y var1.pred var1.var 176s a 180333 332167 6.1618 0.008025 176s b 181000 333000 5.7060 0.011043 176s 176s Slot "lines": 176s [[1]] 176s An object of class "Lines" 176s Slot "Lines": 176s [[1]] 176s An object of class "Line" 176s Slot "coords": 176s [,1] [,2] 176s [1,] 180000 331000 176s [2,] 180000 332000 176s [3,] 181000 333500 176s 176s 176s 176s Slot "ID": 176s [1] "a" 176s 176s 176s [[2]] 176s An object of class "Lines" 176s Slot "Lines": 176s [[1]] 176s An object of class "Line" 176s Slot "coords": 176s [,1] [,2] 176s [1,] 181000 333500 176s [2,] 181000 332500 176s 176s 176s 176s Slot "ID": 176s [1] "b" 176s 176s 176s 176s Slot "bbox": 176s min max 176s x 180000 181000 176s y 331000 333500 176s 176s Slot "proj4string": 176s Coordinate Reference System: 176s Deprecated Proj.4 representation: NA 176s 176s > 176s BEGIN TEST merge.R 176s 176s R version 4.4.3 (2025-02-28) -- "Trophy Case" 176s Copyright (C) 2025 The R Foundation for Statistical Computing 176s Platform: x86_64-pc-linux-gnu 176s 176s R is free software and comes with ABSOLUTELY NO WARRANTY. 176s You are welcome to redistribute it under certain conditions. 176s Type 'license()' or 'licence()' for distribution details. 176s 176s R is a collaborative project with many contributors. 176s Type 'contributors()' for more information and 176s 'citation()' on how to cite R or R packages in publications. 176s 176s Type 'demo()' for some demos, 'help()' for on-line help, or 176s 'help.start()' for an HTML browser interface to help. 176s Type 'q()' to quit R. 176s 176s > options(digits=6) 176s > # illustrates the use of merge, for merging parameters accross variables: 176s > # Z1=m+e1(s) 176s > # Z2=m+e2(s) 176s > # Z1 and Z2 each have a different variogram, but share the parameter m 176s > # see documentation of gstat() function 176s > library(gstat) 176s > d1 = data.frame(x=c(0,2),y=c(0,0),z=c(0,1)) 176s > d2 = data.frame(x=c(0,2),y=c(2,2),z=c(4,5)) 176s > g = gstat(NULL,"d1", z~1,~x+y,d1,model=vgm(1, "Exp", 1)) 176s > g = gstat(g,"d2", z~1,~x+y,d2,model=vgm(1, "Exp", 1), merge=c("d1","d2")) 176s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 176s > predict(g, data.frame(x=1,y=1), debug = 32) 176s Intrinsic Correlation found. Good. 176s [using ordinary cokriging] 176s we're at location X: 1 Y: 1 Z: 0 176s zero block size 176s we're at point X: 1 Y: 1 Z: 0 176s 176s # X: 176s #Matrix: 4 by 1 176s rbind( 176s c( 1.000000), # row 1 176s c( 1.000000), # row 2 176s c( 1.000000), # row 3 176s c( 1.000000) # row 4 176s ) 176s [using generalized covariances: max_val - semivariance()] 176s # Covariances (x_i, x_j) matrix C (upper triangle): 176s #Matrix: 4 by 4 176s rbind( 176s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 176s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 176s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 176s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 176s ) 176s 176s # glm->C, Choleski decomposed:: 176s #Matrix: 4 by 4 176s rbind( 176s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 176s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 176s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 176s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 176s ) 176s 176s # X'C-1 X: 176s #Matrix: 1 by 1 176s rbind( 176s c( 3.245289) # row 1 176s ) 176s 176s # beta: 176s #Vector: dim: 1 176s c( 2.500000) 176s # Cov(beta), (X'C-1 X)-1: 176s #Matrix: 1 by 1 176s rbind( 176s c( 0.308139) # row 1 176s ) 176s 176s # Corr(beta): 176s #Matrix: 1 by 1 176s rbind( 176s c( 1.000000) # row 1 176s ) 176s 176s # X0 (X values at prediction location x0): 176s #Matrix: 1 by 2 176s rbind( 176s c( 1.000000, 1.000000) # row 1 176s ) 176s 176s # BLUE(mu), E(y(x0)) = X0'beta: 176s #Vector: dim: 2 176s c( 2.500000, 2.500000) 176s # Covariances (x_i, x_0), C0: 176s #Matrix: 4 by 2 176s rbind( 176s c( 0.243117, 0.121558), # row 1 176s c( 0.243117, 0.121558), # row 2 176s c( 0.121558, 0.243117), # row 3 176s c( 0.121558, 0.243117) # row 4 176s ) 176s 176s # C-1 C0: 176s #Matrix: 4 by 2 176s rbind( 176s c( 0.206482, 0.089387), # row 1 176s c( 0.206482, 0.089387), # row 2 176s c( 0.089387, 0.206482), # row 3 176s c( 0.089387, 0.206482) # row 4 176s ) 176s 176s # [a] Cov_ij(B,B) or Cov_ij(0,0): 176s #Matrix: 2 by 2 176s rbind( 176s c( 1.000000, 0.500000), # row 1 176s c( 0.500000, 1.000000) # row 2 176s ) 176s 176s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 176s #Matrix: 2 by 2 176s rbind( 176s c( 0.051360, 0.051360), # row 1 176s c( 0.051360, 0.051360) # row 2 176s ) 176s 176s # [b] c0'C-1 c0: 176s #Matrix: 2 by 2 176s rbind( 176s c( 0.122130, 0.093662), # row 1 176s c( 0.093662, 0.122130) # row 2 176s ) 176s 176s # Best Linear Unbiased Predictor: 176s #Vector: dim: 2 176s c( 2.031619, 2.968381) 176s # MSPE ([a]-[b]+[c]): 176s #Matrix: 2 by 2 176s rbind( 176s c( 0.929230, 0.457698), # row 1 176s c( 0.457698, 0.929230) # row 2 176s ) 176s 176s # kriging weights: 176s #Matrix: 4 by 2 176s rbind( 176s c( 0.308548, 0.191452), # row 1 176s c( 0.308548, 0.191452), # row 2 176s c( 0.191452, 0.308548), # row 3 176s c( 0.191452, 0.308548) # row 4 176s ) 176s 176s 176s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 176s 1 1 1 2.03162 0.92923 2.96838 0.92923 0.457698 176s > 176s > # Z1 and Z2 share a regression slope: 176s > g = gstat(NULL,"d1", z~x,~x+y,d1,model=vgm(1, "Exp", 1)) 176s > g = gstat(g,"d2", z~x,~x+y,d2,model=vgm(1, "Exp", 1), 176s + merge=list(c("d1",2,"d2",2))) 176s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 176s > predict(g, data.frame(x=1,y=1), debug = 32) 176s Intrinsic Correlation found. Good. 176s [using universal cokriging] 176s we're at location X: 1 Y: 1 Z: 0 176s zero block size 176s we're at point X: 1 Y: 1 Z: 0 176s 176s # X: 176s #Matrix: 4 by 3 176s rbind( 176s c( 1.000000, 0.000000, 0.000000), # row 1 176s c( 1.000000, 2.000000, 0.000000), # row 2 176s c( 0.000000, 0.000000, 1.000000), # row 3 176s c( 0.000000, 2.000000, 1.000000) # row 4 176s ) 176s [using generalized covariances: max_val - semivariance()] 176s # Covariances (x_i, x_j) matrix C (upper triangle): 176s #Matrix: 4 by 4 176s rbind( 176s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 176s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 176s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 176s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 176s ) 176s 176s # glm->C, Choleski decomposed:: 176s #Matrix: 4 by 4 176s rbind( 176s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 176s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 176s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 176s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 176s ) 176s 176s # X'C-1 X: 176s #Matrix: 3 by 3 176s rbind( 176s c( 1.774607, 1.622645, -0.151962), # row 1 176s c( 1.622645, 7.676050, 1.622645), # row 2 176s c(-0.151962, 1.622645, 1.774607) # row 3 176s ) 176s 176s # beta: 176s #Vector: dim: 3 176s c( 0.000000, 0.500000, 4.000000) 176s # Cov(beta), (X'C-1 X)-1: 176s #Matrix: 3 by 3 176s rbind( 176s c( 0.793363, -0.225695, 0.274305), # row 1 176s c(-0.225695, 0.225695, -0.225695), # row 2 176s c( 0.274305, -0.225695, 0.793363) # row 3 176s ) 176s 176s # Corr(beta): 176s #Matrix: 3 by 3 176s rbind( 176s c( 1.000000, -0.533366, 0.345750), # row 1 176s c(-0.533366, 1.000000, -0.533366), # row 2 176s c( 0.345750, -0.533366, 1.000000) # row 3 176s ) 176s 176s # X0 (X values at prediction location x0): 176s #Matrix: 3 by 2 176s rbind( 176s c( 1.000000, 0.000000), # row 1 176s c( 1.000000, 1.000000), # row 2 176s c( 0.000000, 1.000000) # row 3 176s ) 176s 176s # BLUE(mu), E(y(x0)) = X0'beta: 176s #Vector: dim: 2 176s c( 0.500000, 4.500000) 176s # Covariances (x_i, x_0), C0: 176s #Matrix: 4 by 2 176s rbind( 176s c( 0.243117, 0.121558), # row 1 176s c( 0.243117, 0.121558), # row 2 176s c( 0.121558, 0.243117), # row 3 176s c( 0.121558, 0.243117) # row 4 176s ) 176s 176s # C-1 C0: 176s #Matrix: 4 by 2 176s rbind( 176s c( 0.206482, 0.089387), # row 1 176s c( 0.206482, 0.089387), # row 2 176s c( 0.089387, 0.206482), # row 3 176s c( 0.089387, 0.206482) # row 4 176s ) 176s 176s # [a] Cov_ij(B,B) or Cov_ij(0,0): 176s #Matrix: 2 by 2 176s rbind( 176s c( 1.000000, 0.500000), # row 1 176s c( 0.500000, 1.000000) # row 2 176s ) 176s 176s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 176s #Matrix: 2 by 2 176s rbind( 176s c( 0.203564, -0.100844), # row 1 176s c(-0.100844, 0.203564) # row 2 176s ) 176s 176s # [b] c0'C-1 c0: 176s #Matrix: 2 by 2 176s rbind( 176s c( 0.122130, 0.093662), # row 1 176s c( 0.093662, 0.122130) # row 2 176s ) 176s 176s # Best Linear Unbiased Predictor: 176s #Vector: dim: 2 176s c( 0.500000, 4.500000) 176s # MSPE ([a]-[b]+[c]): 176s #Matrix: 2 by 2 176s rbind( 176s c( 1.081434, 0.305494), # row 1 176s c( 0.305494, 1.081434) # row 2 176s ) 176s 176s # kriging weights: 176s #Matrix: 4 by 2 176s rbind( 176s c( 0.500000, 0.000000), # row 1 176s c( 0.500000, 0.000000), # row 2 176s c( 0.000000, 0.500000), # row 3 176s c( 0.000000, 0.500000) # row 4 176s ) 176s 176s 176s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 176s 1 1 1 0.5 1.08143 4.5 1.08143 0.305494 176s > 176s BEGIN TEST na.action.R 176s 176s R version 4.4.3 (2025-02-28) -- "Trophy Case" 176s Copyright (C) 2025 The R Foundation for Statistical Computing 176s Platform: x86_64-pc-linux-gnu 176s 176s R is free software and comes with ABSOLUTELY NO WARRANTY. 176s You are welcome to redistribute it under certain conditions. 176s Type 'license()' or 'licence()' for distribution details. 176s 176s R is a collaborative project with many contributors. 176s Type 'contributors()' for more information and 176s 'citation()' on how to cite R or R packages in publications. 176s 176s Type 'demo()' for some demos, 'help()' for on-line help, or 176s 'help.start()' for an HTML browser interface to help. 176s Type 'q()' to quit R. 176s 177s > library(sp) 177s > 177s > data(meuse) 177s > data(meuse.grid) 177s > 177s > set.seed(13131) # reproduce results 177s > 177s > # select 10 random rows; 177s > # create two missing values in the coordinates: 177s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 177s > m[c(2,8), "x"] = NA 177s > 177s > library(gstat) 177s > ## this is not allowed anymore: 177s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.pass)) 177s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.omit)) 177s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 177s missing values in object 177s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 177s missing values in object 177s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.exclude)) 177s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 177s missing values in object 177s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.fail)) 177s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 177s missing values in object 177s > 177s > # select 10 random rows; 177s > # create two missing values in the regressor variable: 177s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 177s > m[c(3,7), "dist"] = NA 177s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.pass) 177s [ordinary or weighted least squares prediction] 177s x y var1.pred var1.var 177s 1 178860 330860 6.530134 0.2415196 177s 2 180260 331860 5.389567 0.2406041 177s 3 180100 331860 NA NA 177s 4 180460 331820 5.213370 0.2417197 177s 5 179660 330580 5.550859 0.2398778 177s 6 179740 330300 6.108648 0.2395392 177s 7 180220 330660 NA NA 177s 8 178580 329820 6.533801 0.2415453 177s 9 180100 331900 5.580264 0.2397758 177s 10 180780 331900 5.095967 0.2426499 177s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.omit) 177s [ordinary or weighted least squares prediction] 177s x y var1.pred var1.var 177s 1877 178860 330860 6.530134 0.2415196 177s 1015 180260 331860 5.389567 0.2406041 177s 1056 180460 331820 5.213370 0.2417197 177s 2199 179660 330580 5.550859 0.2398778 177s 2556 179740 330300 6.108648 0.2395392 177s 2985 178580 329820 6.533801 0.2415453 177s 975 180100 331900 5.580264 0.2397758 177s 992 180780 331900 5.095967 0.2426499 177s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.exclude) 177s [ordinary or weighted least squares prediction] 177s x y var1.pred var1.var 177s 1877 178860 330860 6.530134 0.2415196 177s 1015 180260 331860 5.389567 0.2406041 177s 1056 180460 331820 5.213370 0.2417197 177s 2199 179660 330580 5.550859 0.2398778 177s 2556 179740 330300 6.108648 0.2395392 177s 2985 178580 329820 6.533801 0.2415453 177s 975 180100 331900 5.580264 0.2397758 177s 992 180780 331900 5.095967 0.2426499 177s > try(krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.fail)) 177s Error in na.fail.default(structure(list(dist = c(0.00135803, 0.423804, : 177s missing values in object 177s > 177s BEGIN TEST rings.R 177s 177s R version 4.4.3 (2025-02-28) -- "Trophy Case" 177s Copyright (C) 2025 The R Foundation for Statistical Computing 177s Platform: x86_64-pc-linux-gnu 177s 177s R is free software and comes with ABSOLUTELY NO WARRANTY. 177s You are welcome to redistribute it under certain conditions. 177s Type 'license()' or 'licence()' for distribution details. 177s 177s R is a collaborative project with many contributors. 177s Type 'contributors()' for more information and 177s 'citation()' on how to cite R or R packages in publications. 177s 177s Type 'demo()' for some demos, 'help()' for on-line help, or 177s 'help.start()' for an HTML browser interface to help. 177s Type 'q()' to quit R. 177s 177s > library(sp) 178s > library(gstat) 178s > set.seed(13331) 178s > 178s > x = runif(10) 178s > y = runif(10) 178s > z = rnorm(10) 178s > d = data.frame(x=x,y=y,z=z) 178s > bl = c(1,1) 178s > 178s > nd = data.frame(x=.5, y=.5) 178s > 178s > # single block: 178s > library(sp) 178s > coordinates(d) = ~x+y 178s > nd = SpatialPoints(nd) 178s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 178s + set = list(nb=4)) 178s [using ordinary kriging] 178s > 178s > ring = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 178s > r1 = SpatialPolygons(list(Polygons(list(Polygon(ring)), ID = "xx"))) 178s > a = data.frame(a = 1, b = 2) 178s > rownames(a) = "xx" 178s > r1df = SpatialPolygonsDataFrame(r1, a) 178s > 178s > g = gstat(formula=z~1, data=d, model=vgm(1, "Exp", 1)) 178s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 178s > yy = predict(g, r1df, block = bl, sps.args = args) 178s [using ordinary kriging] 178s > 178s > xx = as.data.frame(xx) 178s > yy = as.data.frame(yy) 178s > row.names(xx) = row.names(yy) 178s > print(all.equal(xx,yy)) 178s [1] TRUE 178s > 178s > ## multiple blocks of equal size: 178s > nd = data.frame(x= 0:4 + .5, y=rep(.5,5)) 178s > nd = SpatialPoints(nd) 178s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 178s + set = list(nb=4)) 178s [using ordinary kriging] 178s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 178s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 178s > ring2 = cbind(c(2+0,2+bl[1],2+bl[1],2+0,2+0), c(0,0,bl[2],bl[2],0)) 178s > ring3 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 178s > ring4 = cbind(c(4+0,4+bl[1],4+bl[1],4+0,4+0), c(0,0,bl[2],bl[2],0)) 178s > r1 = SpatialPolygons(list( 178s + Polygons(list(Polygon(ring0)), ID = "x0"), 178s + Polygons(list(Polygon(ring1)), ID = "x1"), 178s + Polygons(list(Polygon(ring2)), ID = "x2"), 178s + Polygons(list(Polygon(ring3)), ID = "x3"), 178s + Polygons(list(Polygon(ring4)), ID = "x4") 178s + )) 178s > df = data.frame(a=rep(1,5), b= rep(1,5)) 178s > rownames(df) = c("x0", "x1", "x2", "x3", "x4") 178s > r1df = SpatialPolygonsDataFrame(r1, df) 178s > 178s > yy = predict(g, r1, block = bl, sps.args = args) 178s [using ordinary kriging] 178s > xx = as.data.frame(xx) 178s > yy = as.data.frame(yy) 178s > row.names(xx) = row.names(yy) 178s > all.equal(xx, yy) 178s [1] TRUE 178s > 178s > ## multiple blocks of equal size: 178s > args = list(type = "regular", cellsize=.25, offset=c(0.5,0.5), n=16) 178s > yy = predict(g, r1, block = bl, sps.args = args) 178s [using ordinary kriging] 178s > xx = as.data.frame(xx) 178s > yy = as.data.frame(yy) 178s > row.names(xx) = row.names(yy) 178s > print(all.equal(xx, yy)) 178s [1] TRUE 178s > 178s > ## multiple blocks of varying size: 178s > nd = data.frame(x=c(0.5, 2, 4.5), y=c(0.5, 1, 1.5)) 178s > nd = SpatialPoints(nd) 178s > bl = c(1,1) 178s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 178s > xx1 = krige(z~1, d, nd[1], model=vgm(1, "Exp", 1), block = bl, 178s + set = list(nb=4)) 178s [using ordinary kriging] 178s > bl = c(2,2) 178s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 178s > xx2 = krige(z~1, d, nd[2], model=vgm(1, "Exp", 1), block = bl, 178s + set = list(nb=4)) 178s [using ordinary kriging] 178s > bl = c(3,3) 178s > ring2 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 178s > xx3 = krige(z~1, d, nd[3], model=vgm(1, "Exp", 1), block = bl, 178s + set = list(nb=4)) 178s [using ordinary kriging] 178s > r1 = SpatialPolygons(list( 178s + Polygons(list(Polygon(ring0)), ID = "x0"), 178s + Polygons(list(Polygon(ring1)), ID = "x1"), 178s + Polygons(list(Polygon(ring2)), ID = "x2") 178s + )) 178s > df = data.frame(a = rep(1,3), b = rep(1,3)) 178s > rownames(df) = c("x0", "x1", "x2") 178s > r1df = SpatialPolygonsDataFrame(r1, df) 178s > 178s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 178s > yy = predict(g, r1df, block = bl, sps.args = args) 178s [using ordinary kriging] 178s > xx = rbind(as.data.frame(xx1), as.data.frame(xx2), as.data.frame(xx3)) 178s > row.names(xx) = 1:3 178s > xx = as.data.frame(xx) 178s > yy = as.data.frame(yy) 178s > row.names(xx) = row.names(yy) 178s > print(all.equal(xx, yy)) 178s [1] TRUE 178s > 178s BEGIN TEST sim.R 178s 178s R version 4.4.3 (2025-02-28) -- "Trophy Case" 178s Copyright (C) 2025 The R Foundation for Statistical Computing 178s Platform: x86_64-pc-linux-gnu 178s 178s R is free software and comes with ABSOLUTELY NO WARRANTY. 178s You are welcome to redistribute it under certain conditions. 178s Type 'license()' or 'licence()' for distribution details. 178s 178s R is a collaborative project with many contributors. 178s Type 'contributors()' for more information and 178s 'citation()' on how to cite R or R packages in publications. 178s 178s Type 'demo()' for some demos, 'help()' for on-line help, or 178s 'help.start()' for an HTML browser interface to help. 178s Type 'q()' to quit R. 178s 178s > options(digits=6) 178s > library(sp) 178s > data(meuse) 178s > set.seed(158229572) 178s > new.locs <- data.frame(x = c(181170, 180310, 180205, 178673, 178770, 178270), 178s + y = c(333250, 332189, 331707, 330066, 330675, 331075)) 178s > library(gstat) 179s > krige(zinc ~ 1, ~ x + y, meuse, newdata = new.locs, 179s + model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 179s + block = c(40,40), nmax = 40, nsim = 10) 179s drawing 10 GLS realisations of beta... 179s [using conditional Gaussian simulation] 179s x y sim1 sim2 sim3 sim4 sim5 sim6 sim7 179s 1 181170 333250 267.385 27.5686 428.144 381.576 151.119 175.890 293.273 179s 2 180310 332189 429.437 659.6579 564.023 611.666 612.756 619.791 771.961 179s 3 180205 331707 205.978 412.7276 271.827 380.349 169.488 369.822 266.026 179s 4 178673 330066 117.479 684.0663 399.148 585.096 606.396 867.866 807.634 179s 5 178770 330675 780.072 837.4628 682.690 911.052 600.984 783.019 749.476 179s 6 178270 331075 1025.778 1582.0269 614.235 332.377 660.228 589.447 972.018 179s sim8 sim9 sim10 179s 1 294.107 113.347 279.991 179s 2 776.498 724.160 901.692 179s 3 338.021 630.244 140.272 179s 4 127.301 957.242 444.007 179s 5 533.773 748.144 623.960 179s 6 1084.170 537.604 -214.972 179s > 179s BEGIN TEST stars.R 179s 179s R version 4.4.3 (2025-02-28) -- "Trophy Case" 179s Copyright (C) 2025 The R Foundation for Statistical Computing 179s Platform: x86_64-pc-linux-gnu 179s 179s R is free software and comes with ABSOLUTELY NO WARRANTY. 179s You are welcome to redistribute it under certain conditions. 179s Type 'license()' or 'licence()' for distribution details. 179s 179s R is a collaborative project with many contributors. 179s Type 'contributors()' for more information and 179s 'citation()' on how to cite R or R packages in publications. 179s 179s Type 'demo()' for some demos, 'help()' for on-line help, or 179s 'help.start()' for an HTML browser interface to help. 179s Type 'q()' to quit R. 179s 179s > Sys.setenv(TZ = "UTC") 179s > 179s > # 0. using sp: 179s > 179s > suppressPackageStartupMessages(library(sp)) 179s > demo(meuse, ask = FALSE) 179s 179s 179s demo(meuse) 179s ---- ~~~~~ 179s 179s > require(sp) 179s 179s > crs = CRS("EPSG:28992") 180s 180s > data("meuse") 180s 180s > coordinates(meuse) <- ~x+y 180s 180s > proj4string(meuse) <- crs 180s 180s > data("meuse.grid") 180s 180s > coordinates(meuse.grid) <- ~x+y 180s 180s > gridded(meuse.grid) <- TRUE 180s 180s > proj4string(meuse.grid) <- crs 180s 180s > data("meuse.riv") 180s 180s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 180s 180s > proj4string(meuse.riv) <- crs 180s 180s > data("meuse.area") 180s 180s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 180s 180s > proj4string(meuse.area) <- crs 180s > suppressPackageStartupMessages(library(gstat)) 180s > v = variogram(log(zinc)~1, meuse) 180s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 180s model psill range 180s 1 Nug 0.05066243 0.0000 180s 2 Sph 0.59060780 897.0209 180s > k_sp = krige(log(zinc)~1, meuse[-(1:5),], meuse[1:5,], v.fit) 180s [using ordinary kriging] 180s > k_sp_grd = krige(log(zinc)~1, meuse, meuse.grid, v.fit) 180s [using ordinary kriging] 180s > 180s > # 1. using sf: 180s > suppressPackageStartupMessages(library(sf)) 180s > demo(meuse_sf, ask = FALSE, echo = FALSE) 180s > # reloads meuse as data.frame, so 180s > demo(meuse, ask = FALSE) 180s 180s 180s demo(meuse) 180s ---- ~~~~~ 180s 180s > require(sp) 180s 180s > crs = CRS("EPSG:28992") 180s 180s > data("meuse") 180s 180s > coordinates(meuse) <- ~x+y 180s 180s > proj4string(meuse) <- crs 180s 180s > data("meuse.grid") 180s 180s > coordinates(meuse.grid) <- ~x+y 180s 180s > gridded(meuse.grid) <- TRUE 180s 180s > proj4string(meuse.grid) <- crs 180s 180s > data("meuse.riv") 180s 180s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 180s 180s > proj4string(meuse.riv) <- crs 180s 180s > data("meuse.area") 180s 180s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 180s 180s > proj4string(meuse.area) <- crs 180s > 180s > v = variogram(log(zinc)~1, meuse_sf) 180s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 180s model psill range 180s 1 Nug 0.05066243 0.0000 180s 2 Sph 0.59060780 897.0209 180s > k_sf = krige(log(zinc)~1, meuse_sf[-(1:5),], meuse_sf[1:5,], v.fit) 181s [using ordinary kriging] 181s > 181s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = FALSE) 181s [1] TRUE 181s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = TRUE) 181s [1] "Attributes: < Component “bbox”: Attributes: < Component “dimnames”: Component 1: 2 string mismatches > >" 181s [2] "Attributes: < Component “coords”: Attributes: < Component “dimnames”: Component 2: 2 string mismatches > >" 181s [3] "Attributes: < Component “coords.nrs”: Numeric: lengths (2, 0) differ >" 181s > 181s > # 2. using stars for grid: 181s > 181s > suppressPackageStartupMessages(library(stars)) 181s > st = st_as_stars(meuse.grid) 181s > st_crs(st) 181s Coordinate Reference System: 181s User input: Amersfoort / RD New 181s wkt: 181s PROJCRS["Amersfoort / RD New", 181s BASEGEOGCRS["Amersfoort", 181s DATUM["Amersfoort", 181s ELLIPSOID["Bessel 1841",6377397.155,299.1528128, 181s LENGTHUNIT["metre",1]]], 181s PRIMEM["Greenwich",0, 181s ANGLEUNIT["degree",0.0174532925199433]], 181s ID["EPSG",4289]], 181s CONVERSION["RD New", 181s METHOD["Oblique Stereographic", 181s ID["EPSG",9809]], 181s PARAMETER["Latitude of natural origin",52.1561605555556, 181s ANGLEUNIT["degree",0.0174532925199433], 181s ID["EPSG",8801]], 181s PARAMETER["Longitude of natural origin",5.38763888888889, 181s ANGLEUNIT["degree",0.0174532925199433], 181s ID["EPSG",8802]], 181s PARAMETER["Scale factor at natural origin",0.9999079, 181s SCALEUNIT["unity",1], 181s ID["EPSG",8805]], 181s PARAMETER["False easting",155000, 181s LENGTHUNIT["metre",1], 181s ID["EPSG",8806]], 181s PARAMETER["False northing",463000, 181s LENGTHUNIT["metre",1], 181s ID["EPSG",8807]]], 181s CS[Cartesian,2], 181s AXIS["easting (X)",east, 181s ORDER[1], 181s LENGTHUNIT["metre",1]], 181s AXIS["northing (Y)",north, 181s ORDER[2], 181s LENGTHUNIT["metre",1]], 181s USAGE[ 181s SCOPE["Engineering survey, topographic mapping."], 181s AREA["Netherlands - onshore, including Waddenzee, Dutch Wadden Islands and 12-mile offshore coastal zone."], 181s BBOX[50.75,3.2,53.7,7.22]], 181s ID["EPSG",28992]] 181s > 181s > # compare inputs: 181s > sp = as(st, "Spatial") 181s > fullgrid(meuse.grid) = TRUE 181s > all.equal(sp, meuse.grid["dist"], check.attributes = FALSE) 181s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 181s [2] "Names: 1 string mismatch" 181s > all.equal(sp, meuse.grid["dist"], check.attributes = TRUE, use.names = FALSE) 181s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 181s [2] "Names: 1 string mismatch" 181s [3] "Attributes: < Component 3: Names: 1 string mismatch >" 181s [4] "Attributes: < Component 3: Length mismatch: comparison on first 1 components >" 181s [5] "Attributes: < Component 3: Component 1: Mean relative difference: 1.08298 >" 181s [6] "Attributes: < Component 4: Attributes: < Component 2: names for current but not for target > >" 181s [7] "Attributes: < Component 4: Attributes: < Component 3: names for current but not for target > >" 181s > 181s > # kriging: 181s > st_crs(st) = st_crs(meuse_sf) = NA # GDAL roundtrip messes them up! 181s > k_st = if (Sys.getenv("USER") == "travis") { 181s + try(krige(log(zinc)~1, meuse_sf, st, v.fit)) 181s + } else { 181s + krige(log(zinc)~1, meuse_sf, st, v.fit) 181s + } 181s [using ordinary kriging] 181s > k_st 181s stars object with 2 dimensions and 2 attributes 181s attribute(s): 181s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 181s var1.pred 4.7765547 5.2376293 5.5728839 5.7072287 6.1717619 7.4399911 5009 181s var1.var 0.0854949 0.1372864 0.1621838 0.1853319 0.2116152 0.5002756 5009 181s dimension(s): 181s from to offset delta x/y 181s x 1 78 178440 40 [x] 181s y 1 104 333760 -40 [y] 181s > 181s > # handle factors, when going to stars? 181s > k_sp_grd$cls = cut(k_sp_grd$var1.pred, c(0, 5, 6, 7, 8, 9)) 181s > st_as_stars(k_sp_grd) 181s stars object with 2 dimensions and 3 attributes 181s attribute(s): 181s var1.pred var1.var cls 181s Min. :4.777 Min. :0.085 (0,5]: 316 181s 1st Qu.:5.238 1st Qu.:0.137 (5,6]:1778 181s Median :5.573 Median :0.162 (6,7]: 962 181s Mean :5.707 Mean :0.185 (7,8]: 47 181s 3rd Qu.:6.172 3rd Qu.:0.212 (8,9]: 0 181s Max. :7.440 Max. :0.500 NA's :5009 181s NA's :5009 NA's :5009 181s dimension(s): 181s from to offset delta refsys x/y 181s x 1 78 178440 40 Amersfoort / RD New [x] 181s y 1 104 333760 -40 Amersfoort / RD New [y] 181s > if (require(raster, quietly = TRUE)) { 181s + print(st_as_stars(raster::stack(k_sp_grd))) # check 181s + print(all.equal(st_redimension(st_as_stars(k_sp_grd)), st_as_stars(raster::stack(k_sp_grd)), check.attributes=FALSE)) 181s + } 185s stars object with 3 dimensions and 1 attribute 185s attribute(s): 185s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 185s var1.pred 0.0854949 0.2116778 2 2.710347 5.237542 7.439991 15027 185s dimension(s): 185s from to offset delta refsys values 185s x 1 78 178440 40 Amersfoort / RD New NULL 185s y 1 104 333760 -40 Amersfoort / RD New NULL 185s band 1 3 NA NA NA var1.pred, var1.var , cls 185s x/y 185s x [x] 185s y [y] 185s band 186s [1] TRUE 186s > 186s > suppressPackageStartupMessages(library(spacetime)) 186s > 186s > tm = as.POSIXct("2019-02-25 15:37:24 CET") 186s > n = 4 186s > s = stars:::st_stars(list(foo = array(1:(n^3), rep(n,3))), 186s + stars:::create_dimensions(list( 186s + x = stars:::create_dimension(from = 1, to = n, offset = 10, delta = 0.5), 186s + y = stars:::create_dimension(from = 1, to = n, offset = 0, delta = -0.7), 186s + time = stars:::create_dimension(values = tm + 1:n)), 186s + raster = stars:::get_raster(dimensions = c("x", "y"))) 186s + ) 186s > s 186s stars object with 3 dimensions and 1 attribute 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s foo 1 16.75 32.5 32.5 48.25 64 186s dimension(s): 186s from to offset delta refsys x/y 186s x 1 4 10 0.5 NA [x] 186s y 1 4 0 -0.7 NA [y] 186s time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct 186s > 186s > as.data.frame(s) 186s x y time foo 186s 1 10.25 -0.35 2019-02-25 15:37:25 1 186s 2 10.75 -0.35 2019-02-25 15:37:25 2 186s 3 11.25 -0.35 2019-02-25 15:37:25 3 186s 4 11.75 -0.35 2019-02-25 15:37:25 4 186s 5 10.25 -1.05 2019-02-25 15:37:25 5 186s 6 10.75 -1.05 2019-02-25 15:37:25 6 186s 7 11.25 -1.05 2019-02-25 15:37:25 7 186s 8 11.75 -1.05 2019-02-25 15:37:25 8 186s 9 10.25 -1.75 2019-02-25 15:37:25 9 186s 10 10.75 -1.75 2019-02-25 15:37:25 10 186s 11 11.25 -1.75 2019-02-25 15:37:25 11 186s 12 11.75 -1.75 2019-02-25 15:37:25 12 186s 13 10.25 -2.45 2019-02-25 15:37:25 13 186s 14 10.75 -2.45 2019-02-25 15:37:25 14 186s 15 11.25 -2.45 2019-02-25 15:37:25 15 186s 16 11.75 -2.45 2019-02-25 15:37:25 16 186s 17 10.25 -0.35 2019-02-25 15:37:26 17 186s 18 10.75 -0.35 2019-02-25 15:37:26 18 186s 19 11.25 -0.35 2019-02-25 15:37:26 19 186s 20 11.75 -0.35 2019-02-25 15:37:26 20 186s 21 10.25 -1.05 2019-02-25 15:37:26 21 186s 22 10.75 -1.05 2019-02-25 15:37:26 22 186s 23 11.25 -1.05 2019-02-25 15:37:26 23 186s 24 11.75 -1.05 2019-02-25 15:37:26 24 186s 25 10.25 -1.75 2019-02-25 15:37:26 25 186s 26 10.75 -1.75 2019-02-25 15:37:26 26 186s 27 11.25 -1.75 2019-02-25 15:37:26 27 186s 28 11.75 -1.75 2019-02-25 15:37:26 28 186s 29 10.25 -2.45 2019-02-25 15:37:26 29 186s 30 10.75 -2.45 2019-02-25 15:37:26 30 186s 31 11.25 -2.45 2019-02-25 15:37:26 31 186s 32 11.75 -2.45 2019-02-25 15:37:26 32 186s 33 10.25 -0.35 2019-02-25 15:37:27 33 186s 34 10.75 -0.35 2019-02-25 15:37:27 34 186s 35 11.25 -0.35 2019-02-25 15:37:27 35 186s 36 11.75 -0.35 2019-02-25 15:37:27 36 186s 37 10.25 -1.05 2019-02-25 15:37:27 37 186s 38 10.75 -1.05 2019-02-25 15:37:27 38 186s 39 11.25 -1.05 2019-02-25 15:37:27 39 186s 40 11.75 -1.05 2019-02-25 15:37:27 40 186s 41 10.25 -1.75 2019-02-25 15:37:27 41 186s 42 10.75 -1.75 2019-02-25 15:37:27 42 186s 43 11.25 -1.75 2019-02-25 15:37:27 43 186s 44 11.75 -1.75 2019-02-25 15:37:27 44 186s 45 10.25 -2.45 2019-02-25 15:37:27 45 186s 46 10.75 -2.45 2019-02-25 15:37:27 46 186s 47 11.25 -2.45 2019-02-25 15:37:27 47 186s 48 11.75 -2.45 2019-02-25 15:37:27 48 186s 49 10.25 -0.35 2019-02-25 15:37:28 49 186s 50 10.75 -0.35 2019-02-25 15:37:28 50 186s 51 11.25 -0.35 2019-02-25 15:37:28 51 186s 52 11.75 -0.35 2019-02-25 15:37:28 52 186s 53 10.25 -1.05 2019-02-25 15:37:28 53 186s 54 10.75 -1.05 2019-02-25 15:37:28 54 186s 55 11.25 -1.05 2019-02-25 15:37:28 55 186s 56 11.75 -1.05 2019-02-25 15:37:28 56 186s 57 10.25 -1.75 2019-02-25 15:37:28 57 186s 58 10.75 -1.75 2019-02-25 15:37:28 58 186s 59 11.25 -1.75 2019-02-25 15:37:28 59 186s 60 11.75 -1.75 2019-02-25 15:37:28 60 186s 61 10.25 -2.45 2019-02-25 15:37:28 61 186s 62 10.75 -2.45 2019-02-25 15:37:28 62 186s 63 11.25 -2.45 2019-02-25 15:37:28 63 186s 64 11.75 -2.45 2019-02-25 15:37:28 64 186s > plot(s, col = sf.colors(), axes = TRUE) 186s > (s.stfdf = as(s, "STFDF")) 186s An object of class "STFDF" 186s Slot "data": 186s foo 186s 1 1 186s 2 2 186s 3 3 186s 4 4 186s 5 5 186s 6 6 186s 7 7 186s 8 8 186s 9 9 186s 10 10 186s 11 11 186s 12 12 186s 13 13 186s 14 14 186s 15 15 186s 16 16 186s 17 17 186s 18 18 186s 19 19 186s 20 20 186s 21 21 186s 22 22 186s 23 23 186s 24 24 186s 25 25 186s 26 26 186s 27 27 186s 28 28 186s 29 29 186s 30 30 186s 31 31 186s 32 32 186s 33 33 186s 34 34 186s 35 35 186s 36 36 186s 37 37 186s 38 38 186s 39 39 186s 40 40 186s 41 41 186s 42 42 186s 43 43 186s 44 44 186s 45 45 186s 46 46 186s 47 47 186s 48 48 186s 49 49 186s 50 50 186s 51 51 186s 52 52 186s 53 53 186s 54 54 186s 55 55 186s 56 56 186s 57 57 186s 58 58 186s 59 59 186s 60 60 186s 61 61 186s 62 62 186s 63 63 186s 64 64 186s 186s Slot "sp": 186s Object of class SpatialPixels 186s Grid topology: 186s cellcentre.offset cellsize cells.dim 186s x 10.25 0.5 4 186s y -2.45 0.7 4 186s SpatialPoints: 186s x y 186s [1,] 10.25 -0.35 186s [2,] 10.75 -0.35 186s [3,] 11.25 -0.35 186s [4,] 11.75 -0.35 186s [5,] 10.25 -1.05 186s [6,] 10.75 -1.05 186s [7,] 11.25 -1.05 186s [8,] 11.75 -1.05 186s [9,] 10.25 -1.75 186s [10,] 10.75 -1.75 186s [11,] 11.25 -1.75 186s [12,] 11.75 -1.75 186s [13,] 10.25 -2.45 186s [14,] 10.75 -2.45 186s [15,] 11.25 -2.45 186s [16,] 11.75 -2.45 186s Coordinate Reference System (CRS) arguments: NA 186s 186s Slot "time": 186s timeIndex 186s 2019-02-25 15:37:25 1 186s 2019-02-25 15:37:26 2 186s 2019-02-25 15:37:27 3 186s 2019-02-25 15:37:28 4 186s 186s Slot "endTime": 186s [1] "2019-02-25 15:37:26 UTC" "2019-02-25 15:37:27 UTC" 186s [3] "2019-02-25 15:37:28 UTC" "2019-02-25 15:37:29 UTC" 186s 186s > stplot(s.stfdf, scales = list(draw = TRUE)) 186s > 186s > (s2 = st_as_stars(s.stfdf)) 186s stars object with 3 dimensions and 1 attribute 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s foo 1 16.75 32.5 32.5 48.25 64 186s dimension(s): 186s from to offset delta refsys x/y 186s x 1 4 10 0.5 NA [x] 186s y 1 4 -1.11e-16 -0.7 NA [y] 186s time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct 186s > plot(s2, col = sf.colors(), axes = TRUE) 186s > all.equal(s, s2, check.attributes = FALSE) 186s [1] TRUE 186s > 186s > # multiple simulations: 186s > data(meuse, package = "sp") 186s > data(meuse.grid, package = "sp") 186s > coordinates(meuse.grid) <- ~x+y 186s > gridded(meuse.grid) <- TRUE 186s > meuse.grid = st_as_stars(meuse.grid) 186s > meuse_sf = st_as_sf(meuse, coords = c("x", "y")) 186s > g = gstat(NULL, "zinc", zinc~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10) 186s > g = gstat(g, "lead", lead~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10, fill.cross = TRUE) 186s > set.seed(123) 186s > ## IGNORE_RDIFF_BEGIN 186s > (p = predict(g, meuse.grid, nsim = 5)) 186s drawing 5 multivariate GLS realisations of beta... 186s [using conditional Gaussian simulation] 186s stars object with 3 dimensions and 2 attributes 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 186s zinc 101.7643 199.59256 300.2140 399.8017 544.0327 1817.2057 25045 186s lead 32.7799 73.03151 107.9339 133.1725 178.8162 638.9396 25045 186s dimension(s): 186s from to offset delta values x/y 186s x 1 78 178440 40 NULL [x] 186s y 1 104 333760 -40 NULL [y] 186s sample 1 5 NA NA sim1,...,sim5 186s > ## IGNORE_RDIFF_END 186s > 186s BEGIN TEST unproj.R 186s 186s R version 4.4.3 (2025-02-28) -- "Trophy Case" 186s Copyright (C) 2025 The R Foundation for Statistical Computing 186s Platform: x86_64-pc-linux-gnu 186s 186s R is free software and comes with ABSOLUTELY NO WARRANTY. 186s You are welcome to redistribute it under certain conditions. 186s Type 'license()' or 'licence()' for distribution details. 186s 186s R is a collaborative project with many contributors. 186s Type 'contributors()' for more information and 186s 'citation()' on how to cite R or R packages in publications. 186s 186s Type 'demo()' for some demos, 'help()' for on-line help, or 186s 'help.start()' for an HTML browser interface to help. 186s Type 'q()' to quit R. 186s 186s > # DOI 10.1007/s11004-011-9344-7 186s > # http://mypage.iu.edu/~srobeson/Pubs/variogram_sphere_mathgeo_2011.pdf 186s > 186s > suppressPackageStartupMessages(library(sp)) 186s > library(gstat) 187s > 187s > if (require(sp, quietly = TRUE) && 187s + suppressPackageStartupMessages(require(fields, quietly = TRUE)) && 187s + suppressPackageStartupMessages(require(sf, quietly = TRUE))) { 187s + data(meuse) 187s + coordinates(meuse) = ~x+y 187s + proj4string(meuse) = CRS("+init=epsg:28992") 187s + ll = "+proj=longlat +ellps=WGS84" 187s + # meuse.ll = spTransform(meuse, CRS("+proj=longlat +ellps=WGS84")) 187s + meuse.ll = as(st_transform(sf::st_as_sf(meuse), sf::st_crs(ll)), "Spatial") 187s + meuse.ll[1:10,] 187s + variogram(log(zinc)~1, meuse.ll) 187s + 187s + cloud1 = variogram(log(zinc)~1, meuse, cloud=T, cutoff=6000) 187s + cloud2 = variogram(log(zinc)~1, meuse.ll, cloud=T, cutoff=6) 187s + 187s + plot(cloud1$dist/1000, cloud2$dist, xlab="Amersfoort, km", ylab = "Long/lat") 187s + abline(0,1) 187s + 187s + data(ozone2) 187s + oz = SpatialPointsDataFrame(ozone2$lon.lat, 187s + data.frame(t(ozone2$y)), 187s + proj4string=CRS("+proj=longlat +ellps=WGS84")) 187s + variogram(X870731~1,oz[!is.na(oz$X870731),]) 187s + utm16 = "+proj=utm +zone=16" 187s + # oz.utm = spTransform(oz, utm16) 187s + oz.utm = as(sf::st_transform(sf::st_as_sf(oz), utm16) , "Spatial") 187s + variogram(X870731~1,oz.utm[!is.na(oz$X870731),]) 187s + 187s + # Timothy Hilton, r-sig-geo, Sept 14, 2008: 187s + 187s + foo <- 187s + structure(list(z = c(-1.95824831109744, -1.9158901643563, 4.22211761150161, 187s + 3.23356929459598, 1.12038389231868, 0.34613850821113, 1.12589932643631, 187s + 23.517912251617, 3.0519158690268, 3.20261431141517, -2.10947106854739 187s + ), lon = c(-125.29228, -82.1556, -98.524722, -99.948333, -104.691741, 187s + -79.420833, -105.100533, -88.291867, -72.171478, -121.556944, 187s + -89.34765), lat = c(49.87217, 48.2167, 55.905833, 56.635833, 187s + 53.916264, 39.063333, 48.307883, 40.0061, 42.537756, 44.448889, 187s + 46.242017)), .Names = c("z", "lon", "lat"), row.names = c(NA, 187s + -11L), class = "data.frame") 187s + 187s + coordinates(foo) <- ~lon+lat 187s + 187s + proj4string(foo) <- CRS('+proj=longlat +ellps=WGS84') 187s + 187s + vg.foo <- variogram(z~1, foo, cloud=TRUE, cutoff=1e10) 187s + 187s + cat('==========\nvariogram:\n') 187s + print(head(vg.foo)) 187s + 187s + cat('==========\nspDistsN1 Distances:\n') 187s + print(spDistsN1(coordinates(foo), coordinates(foo)[1,], longlat=TRUE)) 187s + } 188s ========== 188s variogram: 188s dist gamma dir.hor dir.ver id left right 188s 1 3115.1190 8.971063e-04 0 0 var1 2 1 188s 2 1908.0468 1.909846e+01 0 0 var1 3 1 188s 3 1405.6211 1.883757e+01 0 0 var1 3 2 188s 4 1837.5667 1.347749e+01 0 0 var1 4 1 188s 5 1522.8765 1.325847e+01 0 0 var1 4 2 188s 6 119.9386 4.886139e-01 0 0 var1 4 3 188s ========== 188s spDistsN1 Distances: 188s [1] 0.0000 3115.1190 1908.0468 1837.5667 1481.6293 3775.6751 1480.4477 188s [8] 3081.7541 4090.4022 665.9348 2683.1516 188s > Warning message: 188s In CPL_crs_from_input(x) : 188s GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order. 188s 188s BEGIN TEST variogram.R 188s 188s R version 4.4.3 (2025-02-28) -- "Trophy Case" 188s Copyright (C) 2025 The R Foundation for Statistical Computing 188s Platform: x86_64-pc-linux-gnu 188s 188s R is free software and comes with ABSOLUTELY NO WARRANTY. 188s You are welcome to redistribute it under certain conditions. 188s Type 'license()' or 'licence()' for distribution details. 188s 188s R is a collaborative project with many contributors. 188s Type 'contributors()' for more information and 188s 'citation()' on how to cite R or R packages in publications. 188s 188s Type 'demo()' for some demos, 'help()' for on-line help, or 188s 'help.start()' for an HTML browser interface to help. 188s Type 'q()' to quit R. 188s 188s > library(sp) 189s > library(gstat) 189s > data(meuse) 189s > variogram(log(zinc)~1, ~x+y, meuse) 189s np dist gamma dir.hor dir.ver id 189s 1 57 79.29244 0.1234479 0 0 var1 189s 2 299 163.97367 0.2162185 0 0 var1 189s 3 419 267.36483 0.3027859 0 0 var1 189s 4 457 372.73542 0.4121448 0 0 var1 189s 5 547 478.47670 0.4634128 0 0 var1 189s 6 533 585.34058 0.5646933 0 0 var1 189s 7 574 693.14526 0.5689683 0 0 var1 189s 8 564 796.18365 0.6186769 0 0 var1 189s 9 589 903.14650 0.6471479 0 0 var1 189s 10 543 1011.29177 0.6915705 0 0 var1 189s 11 500 1117.86235 0.7033984 0 0 var1 189s 12 477 1221.32810 0.6038770 0 0 var1 189s 13 452 1329.16407 0.6517158 0 0 var1 189s 14 457 1437.25620 0.5665318 0 0 var1 189s 15 415 1543.20248 0.5748227 0 0 var1 189s > 189s > coordinates(meuse) <- ~ x + y 189s > variogram(log(zinc)~1, meuse) 189s np dist gamma dir.hor dir.ver id 189s 1 57 79.29244 0.1234479 0 0 var1 189s 2 299 163.97367 0.2162185 0 0 var1 189s 3 419 267.36483 0.3027859 0 0 var1 189s 4 457 372.73542 0.4121448 0 0 var1 189s 5 547 478.47670 0.4634128 0 0 var1 189s 6 533 585.34058 0.5646933 0 0 var1 189s 7 574 693.14526 0.5689683 0 0 var1 189s 8 564 796.18365 0.6186769 0 0 var1 189s 9 589 903.14650 0.6471479 0 0 var1 189s 10 543 1011.29177 0.6915705 0 0 var1 189s 11 500 1117.86235 0.7033984 0 0 var1 189s 12 477 1221.32810 0.6038770 0 0 var1 189s 13 452 1329.16407 0.6517158 0 0 var1 189s 14 457 1437.25620 0.5665318 0 0 var1 189s 15 415 1543.20248 0.5748227 0 0 var1 189s > 189s > ind=seq(1,155,2) 189s > var1= meuse[ind,] 189s > var2= meuse[-ind,] 189s > g <- gstat(NULL, id = "lead", form = lead ~ 1, data=var1) 189s > g <- gstat(g, id = "zinc", form = zinc ~ 1, data=var2) 189s > v.cross <- variogram(g) 189s > plot(v.cross) 189s > 189s > 189s BEGIN TEST vdist.R 189s 189s R version 4.4.3 (2025-02-28) -- "Trophy Case" 189s Copyright (C) 2025 The R Foundation for Statistical Computing 189s Platform: x86_64-pc-linux-gnu 189s 189s R is free software and comes with ABSOLUTELY NO WARRANTY. 189s You are welcome to redistribute it under certain conditions. 189s Type 'license()' or 'licence()' for distribution details. 189s 189s R is a collaborative project with many contributors. 189s Type 'contributors()' for more information and 189s 'citation()' on how to cite R or R packages in publications. 189s 189s Type 'demo()' for some demos, 'help()' for on-line help, or 189s 'help.start()' for an HTML browser interface to help. 189s Type 'q()' to quit R. 189s 189s > library(sp) 189s > library(gstat) 190s > 190s > data(meuse) 190s > coordinates(meuse) = ~x+y 190s > data(meuse.grid) 190s > gridded(meuse.grid) = ~x+y 190s > 190s > mg = meuse.grid 190s > gridded(mg) = FALSE 190s > mg= mg[1500,] 190s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 190s + vdist=FALSE, maxdist=1000, nmax = 9) 190s [using ordinary kriging] 190s coordinates var1.pred var1.var 190s 1500 (180260, 331300) 5.024413 1.114475 190s > 190s > ## IGNORE_RDIFF_BEGIN 190s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 190s + vdist=TRUE, maxdist=1000, nmax = 9) 190s [using ordinary kriging] 190s coordinates var1.pred var1.var 190s 1500 (180260, 331300) 5.568531 1.112945 190s > ## IGNORE_RDIFF_END 190s > 190s autopkgtest [22:15:08]: test run-unit-test: -----------------------] 190s run-unit-test PASS 190s autopkgtest [22:15:08]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 191s autopkgtest [22:15:09]: test pkg-r-autopkgtest: preparing testbed 191s Reading package lists... 191s Building dependency tree... 191s Reading state information... 191s Starting pkgProblemResolver with broken count: 0 191s Starting 2 pkgProblemResolver with broken count: 0 191s Done 192s The following NEW packages will be installed: 192s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 192s dctrl-tools g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc 192s gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 192s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8 192s libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev 192s libgfortran-14-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 192s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 192s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 192s libpkgconf3 libpng-dev libquadmath0 libreadline-dev libstdc++-14-dev 192s libtirpc-dev libtsan2 libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin 192s r-base-dev zlib1g-dev 192s 0 upgraded, 55 newly installed, 0 to remove and 0 not upgraded. 192s Need to get 103 MB of archives. 192s After this operation, 363 MB of additional disk space will be used. 192s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 192s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 192s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 192s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 192s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 192s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 192s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 192s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 192s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 192s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 192s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 193s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 193s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 193s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 193s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 193s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 193s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 193s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 193s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 193s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 193s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 193s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 193s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 193s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 193s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 193s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 193s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 193s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 194s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 194s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 194s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 194s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 194s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 194s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 194s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 194s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 194s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 194s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 194s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 194s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 194s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 194s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 194s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 194s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 194s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 194s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 194s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 194s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 194s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 194s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 194s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 194s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 194s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 194s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 194s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 194s Fetched 103 MB in 2s (50.6 MB/s) 194s Selecting previously unselected package libisl23:amd64. 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 94297 files and directories currently installed.) 194s Preparing to unpack .../00-libisl23_0.27-1_amd64.deb ... 194s Unpacking libisl23:amd64 (0.27-1) ... 194s Selecting previously unselected package libmpc3:amd64. 194s Preparing to unpack .../01-libmpc3_1.3.1-1build2_amd64.deb ... 194s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 194s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 194s Preparing to unpack .../02-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 194s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 195s Selecting previously unselected package cpp-14. 195s Preparing to unpack .../03-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 195s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 195s Selecting previously unselected package cpp-x86-64-linux-gnu. 195s Preparing to unpack .../04-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 195s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 195s Selecting previously unselected package cpp. 195s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 195s Unpacking cpp (4:14.2.0-1ubuntu1) ... 195s Selecting previously unselected package libcc1-0:amd64. 195s Preparing to unpack .../06-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 195s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 195s Selecting previously unselected package libitm1:amd64. 195s Preparing to unpack .../07-libitm1_15-20250222-0ubuntu1_amd64.deb ... 195s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 195s Selecting previously unselected package libasan8:amd64. 195s Preparing to unpack .../08-libasan8_15-20250222-0ubuntu1_amd64.deb ... 195s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 195s Selecting previously unselected package liblsan0:amd64. 195s Preparing to unpack .../09-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 195s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 195s Selecting previously unselected package libtsan2:amd64. 195s Preparing to unpack .../10-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 195s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 195s Selecting previously unselected package libubsan1:amd64. 195s Preparing to unpack .../11-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 195s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 195s Selecting previously unselected package libhwasan0:amd64. 195s Preparing to unpack .../12-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 195s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 195s Selecting previously unselected package libquadmath0:amd64. 195s Preparing to unpack .../13-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 195s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 195s Selecting previously unselected package libgcc-14-dev:amd64. 195s Preparing to unpack .../14-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 195s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 195s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 195s Preparing to unpack .../15-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 195s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 196s Selecting previously unselected package gcc-14. 196s Preparing to unpack .../16-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 196s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 196s Selecting previously unselected package gcc-x86-64-linux-gnu. 196s Preparing to unpack .../17-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 196s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 196s Selecting previously unselected package gcc. 196s Preparing to unpack .../18-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 196s Unpacking gcc (4:14.2.0-1ubuntu1) ... 196s Selecting previously unselected package libstdc++-14-dev:amd64. 196s Preparing to unpack .../19-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 196s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 196s Selecting previously unselected package g++-14-x86-64-linux-gnu. 196s Preparing to unpack .../20-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 196s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 196s Selecting previously unselected package g++-14. 196s Preparing to unpack .../21-g++-14_14.2.0-17ubuntu3_amd64.deb ... 196s Unpacking g++-14 (14.2.0-17ubuntu3) ... 196s Selecting previously unselected package g++-x86-64-linux-gnu. 196s Preparing to unpack .../22-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 196s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 196s Selecting previously unselected package g++. 196s Preparing to unpack .../23-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 196s Unpacking g++ (4:14.2.0-1ubuntu1) ... 196s Selecting previously unselected package build-essential. 196s Preparing to unpack .../24-build-essential_12.10ubuntu1_amd64.deb ... 196s Unpacking build-essential (12.10ubuntu1) ... 196s Selecting previously unselected package dctrl-tools. 196s Preparing to unpack .../25-dctrl-tools_2.24-3build3_amd64.deb ... 196s Unpacking dctrl-tools (2.24-3build3) ... 196s Selecting previously unselected package libgfortran-14-dev:amd64. 196s Preparing to unpack .../26-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 196s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 196s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 196s Preparing to unpack .../27-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 196s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 197s Selecting previously unselected package gfortran-14. 197s Preparing to unpack .../28-gfortran-14_14.2.0-17ubuntu3_amd64.deb ... 197s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 197s Selecting previously unselected package gfortran-x86-64-linux-gnu. 197s Preparing to unpack .../29-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 197s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 197s Selecting previously unselected package gfortran. 197s Preparing to unpack .../30-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 197s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 197s Selecting previously unselected package icu-devtools. 197s Preparing to unpack .../31-icu-devtools_76.1-1ubuntu2_amd64.deb ... 197s Unpacking icu-devtools (76.1-1ubuntu2) ... 197s Selecting previously unselected package libblas-dev:amd64. 197s Preparing to unpack .../32-libblas-dev_3.12.1-2_amd64.deb ... 197s Unpacking libblas-dev:amd64 (3.12.1-2) ... 197s Selecting previously unselected package libbz2-dev:amd64. 197s Preparing to unpack .../33-libbz2-dev_1.0.8-6_amd64.deb ... 197s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 197s Selecting previously unselected package libdeflate-dev:amd64. 197s Preparing to unpack .../34-libdeflate-dev_1.23-1_amd64.deb ... 197s Unpacking libdeflate-dev:amd64 (1.23-1) ... 197s Selecting previously unselected package libicu-dev:amd64. 197s Preparing to unpack .../35-libicu-dev_76.1-1ubuntu2_amd64.deb ... 197s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 197s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 197s Preparing to unpack .../36-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ... 197s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 197s Selecting previously unselected package libjpeg8-dev:amd64. 197s Preparing to unpack .../37-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 197s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 197s Selecting previously unselected package libjpeg-dev:amd64. 197s Preparing to unpack .../38-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 197s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 197s Selecting previously unselected package liblapack-dev:amd64. 197s Preparing to unpack .../39-liblapack-dev_3.12.1-2_amd64.deb ... 197s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 197s Selecting previously unselected package libncurses-dev:amd64. 197s Preparing to unpack .../40-libncurses-dev_6.5+20250216-2_amd64.deb ... 197s Unpacking libncurses-dev:amd64 (6.5+20250216-2) ... 197s Selecting previously unselected package libpcre2-16-0:amd64. 197s Preparing to unpack .../41-libpcre2-16-0_10.45-1_amd64.deb ... 197s Unpacking libpcre2-16-0:amd64 (10.45-1) ... 197s Selecting previously unselected package libpcre2-32-0:amd64. 197s Preparing to unpack .../42-libpcre2-32-0_10.45-1_amd64.deb ... 197s Unpacking libpcre2-32-0:amd64 (10.45-1) ... 197s Selecting previously unselected package libpcre2-posix3:amd64. 197s Preparing to unpack .../43-libpcre2-posix3_10.45-1_amd64.deb ... 197s Unpacking libpcre2-posix3:amd64 (10.45-1) ... 197s Selecting previously unselected package libpcre2-dev:amd64. 197s Preparing to unpack .../44-libpcre2-dev_10.45-1_amd64.deb ... 197s Unpacking libpcre2-dev:amd64 (10.45-1) ... 197s Selecting previously unselected package libpkgconf3:amd64. 197s Preparing to unpack .../45-libpkgconf3_1.8.1-4_amd64.deb ... 197s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 197s Selecting previously unselected package zlib1g-dev:amd64. 198s Preparing to unpack .../46-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 198s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 198s Selecting previously unselected package libpng-dev:amd64. 198s Preparing to unpack .../47-libpng-dev_1.6.47-1_amd64.deb ... 198s Unpacking libpng-dev:amd64 (1.6.47-1) ... 198s Selecting previously unselected package libreadline-dev:amd64. 198s Preparing to unpack .../48-libreadline-dev_8.2-6_amd64.deb ... 198s Unpacking libreadline-dev:amd64 (8.2-6) ... 198s Selecting previously unselected package liblzma-dev:amd64. 198s Preparing to unpack .../49-liblzma-dev_5.6.4-1_amd64.deb ... 198s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 198s Selecting previously unselected package pkgconf-bin. 198s Preparing to unpack .../50-pkgconf-bin_1.8.1-4_amd64.deb ... 198s Unpacking pkgconf-bin (1.8.1-4) ... 198s Selecting previously unselected package pkgconf:amd64. 198s Preparing to unpack .../51-pkgconf_1.8.1-4_amd64.deb ... 198s Unpacking pkgconf:amd64 (1.8.1-4) ... 198s Selecting previously unselected package libtirpc-dev:amd64. 198s Preparing to unpack .../52-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 198s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 198s Selecting previously unselected package r-base-dev. 198s Preparing to unpack .../53-r-base-dev_4.4.3-1_all.deb ... 198s Unpacking r-base-dev (4.4.3-1) ... 198s Selecting previously unselected package pkg-r-autopkgtest. 198s Preparing to unpack .../54-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 198s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 198s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 198s Setting up libncurses-dev:amd64 (6.5+20250216-2) ... 198s Setting up libreadline-dev:amd64 (8.2-6) ... 198s Setting up libpcre2-16-0:amd64 (10.45-1) ... 198s Setting up libpcre2-32-0:amd64 (10.45-1) ... 198s Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 198s Setting up libpkgconf3:amd64 (1.8.1-4) ... 198s Setting up libquadmath0:amd64 (15-20250222-0ubuntu1) ... 198s Setting up libmpc3:amd64 (1.3.1-1build2) ... 198s Setting up icu-devtools (76.1-1ubuntu2) ... 198s Setting up pkgconf-bin (1.8.1-4) ... 198s Setting up liblzma-dev:amd64 (5.6.4-1) ... 198s Setting up libubsan1:amd64 (15-20250222-0ubuntu1) ... 198s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 198s Setting up libpcre2-posix3:amd64 (10.45-1) ... 198s Setting up libhwasan0:amd64 (15-20250222-0ubuntu1) ... 198s Setting up libasan8:amd64 (15-20250222-0ubuntu1) ... 198s Setting up libtsan2:amd64 (15-20250222-0ubuntu1) ... 198s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 198s Setting up libisl23:amd64 (0.27-1) ... 198s Setting up libdeflate-dev:amd64 (1.23-1) ... 198s Setting up libicu-dev:amd64 (76.1-1ubuntu2) ... 198s Setting up libcc1-0:amd64 (15-20250222-0ubuntu1) ... 198s Setting up liblsan0:amd64 (15-20250222-0ubuntu1) ... 198s Setting up libblas-dev:amd64 (3.12.1-2) ... 198s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 198s Setting up dctrl-tools (2.24-3build3) ... 198s Setting up libitm1:amd64 (15-20250222-0ubuntu1) ... 198s Setting up libbz2-dev:amd64 (1.0.8-6) ... 198s Setting up libpcre2-dev:amd64 (10.45-1) ... 198s Setting up libpng-dev:amd64 (1.6.47-1) ... 198s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 198s Setting up pkgconf:amd64 (1.8.1-4) ... 198s Setting up liblapack-dev:amd64 (3.12.1-2) ... 198s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 198s Setting up cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 198s Setting up cpp-14 (14.2.0-17ubuntu3) ... 198s Setting up libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 198s Setting up libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 198s Setting up cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 198s Setting up libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 198s Setting up cpp (4:14.2.0-1ubuntu1) ... 198s Setting up gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 198s Setting up gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 198s Setting up gcc-14 (14.2.0-17ubuntu3) ... 198s Setting up gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 198s Setting up g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 198s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 198s Setting up g++-14 (14.2.0-17ubuntu3) ... 198s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 198s Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 198s Setting up gcc (4:14.2.0-1ubuntu1) ... 198s Setting up g++ (4:14.2.0-1ubuntu1) ... 198s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 198s Setting up build-essential (12.10ubuntu1) ... 198s Setting up gfortran (4:14.2.0-1ubuntu1) ... 198s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 198s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 198s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 198s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 198s Setting up r-base-dev (4.4.3-1) ... 198s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 198s Processing triggers for libc-bin (2.41-1ubuntu2) ... 198s Processing triggers for man-db (2.13.0-1) ... 199s Processing triggers for install-info (7.1.1-1) ... 200s autopkgtest [22:15:18]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 200s autopkgtest [22:15:18]: test pkg-r-autopkgtest: [----------------------- 200s Test: Try to load the R library gstat 200s 200s R version 4.4.3 (2025-02-28) -- "Trophy Case" 200s Copyright (C) 2025 The R Foundation for Statistical Computing 200s Platform: x86_64-pc-linux-gnu 200s 200s R is free software and comes with ABSOLUTELY NO WARRANTY. 200s You are welcome to redistribute it under certain conditions. 200s Type 'license()' or 'licence()' for distribution details. 200s 200s R is a collaborative project with many contributors. 200s Type 'contributors()' for more information and 200s 'citation()' on how to cite R or R packages in publications. 200s 200s Type 'demo()' for some demos, 'help()' for on-line help, or 200s 'help.start()' for an HTML browser interface to help. 200s Type 'q()' to quit R. 200s 201s > library('gstat') 201s > 201s > 201s Other tests are currently unsupported! 201s They will be progressively added. 201s autopkgtest [22:15:19]: test pkg-r-autopkgtest: -----------------------] 202s pkg-r-autopkgtest PASS 202s autopkgtest [22:15:20]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 202s autopkgtest [22:15:20]: @@@@@@@@@@@@@@@@@@@@ summary 202s run-unit-test PASS 202s pkg-r-autopkgtest PASS 219s nova [W] Skipping flock for amd64 219s Creating nova instance adt-plucky-amd64-r-cran-gstat-20250315-221157-juju-7f2275-prod-proposed-migration-environment-15-2bb6b9ff-8c26-4fba-9f50-60e4989ae973 from image adt/ubuntu-plucky-amd64-server-20250306.img (UUID 60d877d7-b74c-4f24-920d-f4570db0a338)... 219s nova [W] Timed out waiting for 5edaaf31-0df9-433f-be5a-4846d9d9ee9b to get deleted.