0s autopkgtest [16:07:59]: starting date and time: 2024-11-02 16:07:59+0000 0s autopkgtest [16:07:59]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [16:07:59]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.iz8sdfa5/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-spacetime --apt-upgrade r-cran-gstat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-spacetime/1.3-2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-31.secgroup --name adt-plucky-amd64-r-cran-gstat-20241102-153240-juju-7f2275-prod-proposed-migration-environment-2-60e53ae5-47bf-4892-b663-91aa5026cfd3 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 54s autopkgtest [16:08:53]: testbed dpkg architecture: amd64 54s autopkgtest [16:08:53]: testbed apt version: 2.9.8 54s autopkgtest [16:08:53]: @@@@@@@@@@@@@@@@@@@@ test bed setup 54s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 54s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [2484 kB] 54s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [40.4 kB] 54s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [175 kB] 54s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 54s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [163 kB] 54s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [235 kB] 54s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 54s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [926 kB] 54s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [1857 kB] 54s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [68.4 kB] 54s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [22.0 kB] 55s Fetched 6085 kB in 1s (10.5 MB/s) 55s Reading package lists... 56s Reading package lists... 57s Building dependency tree... 57s Reading state information... 57s Calculating upgrade... 57s The following packages will be upgraded: 57s python3-zipp 57s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 57s Need to get 10.1 kB of archives. 57s After this operation, 2048 B disk space will be freed. 57s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-zipp all 3.20.2-1 [10.1 kB] 58s Fetched 10.1 kB in 0s (409 kB/s) 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75323 files and directories currently installed.) 58s Preparing to unpack .../python3-zipp_3.20.2-1_all.deb ... 58s Unpacking python3-zipp (3.20.2-1) over (3.20.0-1) ... 58s Setting up python3-zipp (3.20.2-1) ... 58s Reading package lists... 58s Building dependency tree... 58s Reading state information... 59s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 59s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 59s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 59s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 59s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 60s Reading package lists... 60s Reading package lists... 60s Building dependency tree... 60s Reading state information... 61s Calculating upgrade... 61s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 61s Reading package lists... 61s Building dependency tree... 61s Reading state information... 61s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 62s autopkgtest [16:09:01]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 62s autopkgtest [16:09:01]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-gstat 63s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-1-2 (dsc) [2280 B] 63s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-1-2 (tar) [2298 kB] 63s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-1-2 (diff) [3644 B] 63s gpgv: Signature made Sat Aug 19 19:47:01 2023 UTC 63s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 63s gpgv: issuer "tille@debian.org" 63s gpgv: Can't check signature: No public key 63s dpkg-source: warning: cannot verify inline signature for ./r-cran-gstat_2.1-1-2.dsc: no acceptable signature found 63s autopkgtest [16:09:02]: testing package r-cran-gstat version 2.1-1-2 63s autopkgtest [16:09:02]: build not needed 64s autopkgtest [16:09:03]: test run-unit-test: preparing testbed 65s Reading package lists... 65s Building dependency tree... 65s Reading state information... 65s Starting pkgProblemResolver with broken count: 0 65s Starting 2 pkgProblemResolver with broken count: 0 65s Done 66s The following additional packages will be installed: 66s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gdal-data 66s gdal-plugins libaec0 libaom3 libarmadillo14 libarpack2t64 libblas3 libblosc1 66s libcairo2 libcfitsio10t64 libdatrie1 libde265-0 libdeflate0 libfontconfig1 66s libfreexl1 libfyba0t64 libgdal35 libgeos-c1t64 libgeos3.12.2 libgeotiff5 66s libgfortran5 libgif7 libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt 66s libhdf5-103-1t64 libhdf5-hl-100t64 libheif-plugin-aomdec 66s libheif-plugin-libde265 libheif1 libice6 libjbig0 libjpeg-turbo8 libjpeg8 66s libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 66s libltdl7 libminizip1t64 libmysqlclient21 libnetcdf19t64 libodbc2 66s libodbcinst2 libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 66s libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpoppler140 66s libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 66s libspatialite8t64 libsuperlu6 libsz2 libtcl8.6 libthai-data libthai0 66s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 66s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 66s libxt6t64 littler mysql-common proj-data r-base-core r-cran-abind 66s r-cran-class r-cran-classint r-cran-codetools r-cran-dbi r-cran-digest 66s r-cran-dotcall64 r-cran-e1071 r-cran-fields r-cran-fnn r-cran-future 66s r-cran-future.apply r-cran-globals r-cran-gstat r-cran-intervals 66s r-cran-kernsmooth r-cran-lattice r-cran-listenv r-cran-littler 66s r-cran-magrittr r-cran-mapdata r-cran-maps r-cran-mass r-cran-parallelly 66s r-cran-pkgkitten r-cran-proxy r-cran-raster r-cran-rcpp r-cran-rlang 66s r-cran-s2 r-cran-sf r-cran-sftime r-cran-sp r-cran-spacetime r-cran-spam 66s r-cran-stars r-cran-terra r-cran-units r-cran-viridislite r-cran-wk 66s r-cran-xts r-cran-zoo unixodbc-common unzip x11-common xdg-utils zip 66s Suggested packages: 66s geotiff-bin gdal-bin libgeotiff-epsg libhdf4-alt-dev hdf4-tools 66s libheif-plugin-x265 libheif-plugin-ffmpegdec libheif-plugin-jpegdec 66s libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc 66s libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc 66s liblcms2-utils odbc-postgresql tdsodbc ogdi-bin proj-bin tcl8.6 tk8.6 66s elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-rmysql 66s r-cran-mvtnorm r-cran-getopt r-cran-covr r-cran-knitr r-cran-rmarkdown 66s r-cran-mapproj r-cran-inline 66s Recommended packages: 66s proj-bin libheif-plugin-aomenc poppler-data r-recommended r-base-dev 66s r-doc-html r-cran-spdata r-cran-knitr r-cran-rmarkdown r-cran-tinytest 66s r-cran-rhpcblasctl r-cran-rcolorbrewer r-cran-roxygen2 r-cran-testthat 66s r-cran-r.rsp r-cran-markdown r-cran-r.utils r-cran-crayon r-cran-cba 66s r-cran-ncdf4 r-cran-igraph r-cran-exactextractr r-cran-cli r-cran-covr 66s r-cran-fs r-cran-glue r-cran-pillar r-cran-tibble r-cran-usethis 66s r-cran-vctrs r-cran-withr r-cran-bit64 r-cran-blob r-cran-nanoarrow 66s r-cran-dplyr r-cran-ggplot2 r-cran-lwgeom r-cran-matrix r-cran-pbapply 66s r-cran-rpostgresql r-cran-rsqlite r-cran-spatstat r-cran-spatstat.geom 66s r-cran-spatstat.random r-cran-spatstat.linnet r-cran-spatstat.utils 66s r-cran-tidyr r-cran-tidyselect r-cran-ncmeta r-cran-deldir r-cran-foreign 66s r-cran-plm r-cran-isocodes r-cran-truncdist r-cran-cairo r-cran-pcict 66s r-cran-rnetcdf r-cran-clue r-cran-cubelyr r-cran-ggforce r-cran-ggthemes 66s r-cran-httr r-cran-jsonlite r-cran-ncdfgeom r-cran-randomforest 66s r-cran-viridis r-cran-xml r-cran-htmlwidgets r-cran-xml2 r-cran-vdiffr 66s r-cran-readr r-cran-timeseries r-cran-timedate r-cran-tseries r-cran-chron 66s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 66s x11-xserver-utils 66s The following NEW packages will be installed: 66s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 66s fonts-dejavu-mono gdal-data gdal-plugins libaec0 libaom3 libarmadillo14 66s libarpack2t64 libblas3 libblosc1 libcairo2 libcfitsio10t64 libdatrie1 66s libde265-0 libdeflate0 libfontconfig1 libfreexl1 libfyba0t64 libgdal35 66s libgeos-c1t64 libgeos3.12.2 libgeotiff5 libgfortran5 libgif7 libgomp1 66s libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-103-1t64 66s libhdf5-hl-100t64 libheif-plugin-aomdec libheif-plugin-libde265 libheif1 66s libice6 libjbig0 libjpeg-turbo8 libjpeg8 libkmlbase1t64 libkmldom1t64 66s libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 libminizip1t64 66s libmysqlclient21 libnetcdf19t64 libodbc2 libodbcinst2 libogdi4.1 66s libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 66s libpaper-utils libpaper1 libpixman-1-0 libpoppler140 libpq5 libproj25 66s libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 66s libsuperlu6 libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 66s libudunits2-0 libudunits2-data liburiparser1 libwebp7 libxcb-render0 66s libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 libxt6t64 littler 66s mysql-common proj-data r-base-core r-cran-abind r-cran-class r-cran-classint 66s r-cran-codetools r-cran-dbi r-cran-digest r-cran-dotcall64 r-cran-e1071 66s r-cran-fields r-cran-fnn r-cran-future r-cran-future.apply r-cran-globals 66s r-cran-gstat r-cran-intervals r-cran-kernsmooth r-cran-lattice 66s r-cran-listenv r-cran-littler r-cran-magrittr r-cran-mapdata r-cran-maps 66s r-cran-mass r-cran-parallelly r-cran-pkgkitten r-cran-proxy r-cran-raster 66s r-cran-rcpp r-cran-rlang r-cran-s2 r-cran-sf r-cran-sftime r-cran-sp 66s r-cran-spacetime r-cran-spam r-cran-stars r-cran-terra r-cran-units 66s r-cran-viridislite r-cran-wk r-cran-xts r-cran-zoo unixodbc-common unzip 66s x11-common xdg-utils zip 66s 0 upgraded, 138 newly installed, 0 to remove and 0 not upgraded. 66s Need to get 144 MB/144 MB of archives. 66s After this operation, 307 MB of additional disk space will be used. 66s Get:1 /tmp/autopkgtest.28rYIF/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [744 B] 66s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 66s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 66s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 66s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 66s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 66s Get:7 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-data all 3.9.1+dfsg-1build2 [269 kB] 66s Get:8 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-plugins amd64 3.9.1+dfsg-1build2 [25.3 kB] 66s Get:9 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 66s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libaom3 amd64 3.9.1-1 [1933 kB] 66s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 66s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-7ubuntu1 [909 kB] 66s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 66s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarpack2t64 amd64 3.9.1-1.1ubuntu1 [107 kB] 66s Get:15 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsuperlu6 amd64 6.0.1+dfsg1-1build3 [182 kB] 66s Get:16 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarmadillo14 amd64 1:14.0.1+dfsg-2 [105 kB] 66s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB] 66s Get:18 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB] 66s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.42.2-1build1 [279 kB] 66s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 66s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 66s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 66s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 66s Get:24 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcfitsio10t64 amd64 4.4.1-2 [524 kB] 66s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 66s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libde265-0 amd64 1.0.15-1build4 [168 kB] 66s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.21-1 [49.8 kB] 66s Get:28 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfyba0t64 amd64 4.1.1-11build1 [119 kB] 66s Get:29 http://ftpmaster.internal/ubuntu plucky/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [22.9 kB] 66s Get:30 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfreexl1 amd64 2.0.0-1build2 [41.7 kB] 66s Get:31 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos3.12.2 amd64 3.12.2-1 [849 kB] 66s Get:32 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos-c1t64 amd64 3.12.2-1 [94.4 kB] 66s Get:33 http://ftpmaster.internal/ubuntu plucky/universe amd64 proj-data all 9.4.1-1 [7892 kB] 66s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 66s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 66s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 66s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu2 [179 kB] 66s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 66s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 66s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 66s Get:41 http://ftpmaster.internal/ubuntu plucky/universe amd64 libproj25 amd64 9.4.1-1 [1398 kB] 66s Get:42 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeotiff5 amd64 1.7.3-1 [63.0 kB] 66s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libgif7 amd64 5.2.2-1ubuntu1 [35.2 kB] 66s Get:44 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 66s Get:45 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf4-0-alt amd64 4.3.0-1 [285 kB] 66s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 66s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-aomdec amd64 1.18.1-2 [11.1 kB] 66s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-libde265 amd64 1.18.1-2 [8758 B] 66s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif1 amd64 1.18.1-2 [293 kB] 66s Get:50 http://ftpmaster.internal/ubuntu plucky/universe amd64 liburiparser1 amd64 0.9.8+dfsg-1 [35.9 kB] 66s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlbase1t64 amd64 1.3.0-12build1 [49.9 kB] 66s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmldom1t64 amd64 1.3.0-12build1 [156 kB] 66s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlengine1t64 amd64 1.3.0-12build1 [71.4 kB] 66s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 mysql-common all 5.8+1.1.1 [6800 B] 66s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libmysqlclient21 amd64 8.0.39-1 [1250 kB] 66s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB] 66s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6ubuntu1 [472 kB] 66s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libltdl7 amd64 2.4.7-7build1 [40.3 kB] 66s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbc2 amd64 2.3.12-1ubuntu1 [158 kB] 66s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 unixodbc-common all 2.3.12-1ubuntu1 [8796 B] 66s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbcinst2 amd64 2.3.12-1ubuntu1 [30.7 kB] 66s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 libogdi4.1 amd64 4.1.1+ds-4 [226 kB] 66s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu1 [184 kB] 66s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.14-2build1 [161 kB] 66s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libpoppler140 amd64 24.08.0-1 [1168 kB] 66s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libpq5 amd64 17.0-1 [249 kB] 66s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 66s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 librttopo1 amd64 1.1.0-3build2 [191 kB] 66s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 libspatialite8t64 amd64 5.1.0-3build1 [1919 kB] 66s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3 [917 kB] 66s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgdal35 amd64 3.9.1+dfsg-1build2 [9303 kB] 66s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-7ubuntu1 [148 kB] 66s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 66s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 9.0.0-1 [487 kB] 66s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 66s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.0.10-1build3 [41.4 kB] 66s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 66s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 66s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.54.0+ds-2 [235 kB] 66s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-2 [49.1 kB] 66s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-2 [28.8 kB] 66s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper1 amd64 1.1.29build1 [13.4 kB] 66s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 1.1.29build1 [8650 B] 66s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.3-1build3 [15.7 kB] 66s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1build1 [988 kB] 66s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 66s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 66s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.14-1build1 [779 kB] 66s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libudunits2-data all 2.2.28-7build1 [19.4 kB] 66s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 libudunits2-0 amd64 2.2.28-7build1 [54.1 kB] 66s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 66s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14 [174 kB] 66s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 66s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 66s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.1-1 [28.5 MB] 66s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-1 [96.0 kB] 66s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-1 [2486 B] 66s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 66s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-61-1 [1109 kB] 66s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-class amd64 7.3-22-2build1 [88.2 kB] 66s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 66s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-e1071 amd64 1.7-14-1 [558 kB] 66s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernsmooth amd64 2.23-24-1 [92.9 kB] 66s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-classint amd64 0.4-10+dfsg-1 [106 kB] 67s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 67s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 67s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.36-1 [199 kB] 67s Get:108 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dotcall64 amd64 1.1-1-1 [38.1 kB] 67s Get:109 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 67s Get:110 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.13-1 [1990 kB] 67s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spam amd64 2.10-0-1 [2765 kB] 67s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 67s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-maps amd64 3.4.2-1 [2359 kB] 67s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fields amd64 16.2-1 [4392 kB] 67s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fnn amd64 1.1.4-1 [122 kB] 67s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-globals all 0.16.3-1 [120 kB] 67s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 67s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-parallelly amd64 1.37.1-1build1 [365 kB] 67s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 67s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future.apply all 1.11.2+dfsg-1 [172 kB] 67s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 67s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sp amd64 1:2.1-2+dfsg-1 [1447 kB] 67s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-zoo amd64 1.8-12-2 [984 kB] 67s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 67s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-wk amd64 0.9.1-1 [1784 kB] 67s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-s2 amd64 1.1.6-1build2 [1981 kB] 67s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-units amd64 0.8-5+dfsg-1 [275 kB] 67s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sf amd64 1.0-16+dfsg-1build1 [3064 kB] 67s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sftime all 0.2-0-6 [168 kB] 67s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xts amd64 0.13.2-1 [772 kB] 67s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-intervals amd64 0.15.4-1 [756 kB] 67s Get:132 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-spacetime all 1.3-2-1 [2776 kB] 67s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.4-1 [1708 kB] 67s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stars all 0.6-6-1 [4105 kB] 67s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gstat amd64 2.1-1-2 [2343 kB] 67s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB] 67s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-terra amd64 1.7-78-1 [3751 kB] 67s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-raster amd64 3.6-26-1 [3118 kB] 67s Preconfiguring packages ... 68s Fetched 144 MB in 1s (132 MB/s) 68s Selecting previously unselected package fonts-dejavu-mono. 68s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75323 files and directories currently installed.) 68s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ... 68s Unpacking fonts-dejavu-mono (2.37-8) ... 68s Selecting previously unselected package fonts-dejavu-core. 68s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ... 68s Unpacking fonts-dejavu-core (2.37-8) ... 68s Selecting previously unselected package fontconfig-config. 68s Preparing to unpack .../002-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 68s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 68s Selecting previously unselected package libfontconfig1:amd64. 68s Preparing to unpack .../003-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 68s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 68s Selecting previously unselected package fontconfig. 68s Preparing to unpack .../004-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ... 68s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 68s Selecting previously unselected package gdal-data. 68s Preparing to unpack .../005-gdal-data_3.9.1+dfsg-1build2_all.deb ... 68s Unpacking gdal-data (3.9.1+dfsg-1build2) ... 68s Selecting previously unselected package gdal-plugins:amd64. 68s Preparing to unpack .../006-gdal-plugins_3.9.1+dfsg-1build2_amd64.deb ... 68s Unpacking gdal-plugins:amd64 (3.9.1+dfsg-1build2) ... 68s Selecting previously unselected package libaec0:amd64. 68s Preparing to unpack .../007-libaec0_1.1.3-1_amd64.deb ... 68s Unpacking libaec0:amd64 (1.1.3-1) ... 68s Selecting previously unselected package libaom3:amd64. 68s Preparing to unpack .../008-libaom3_3.9.1-1_amd64.deb ... 68s Unpacking libaom3:amd64 (3.9.1-1) ... 68s Selecting previously unselected package libblas3:amd64. 68s Preparing to unpack .../009-libblas3_3.12.0-3build2_amd64.deb ... 68s Unpacking libblas3:amd64 (3.12.0-3build2) ... 68s Selecting previously unselected package libgfortran5:amd64. 68s Preparing to unpack .../010-libgfortran5_14.2.0-7ubuntu1_amd64.deb ... 68s Unpacking libgfortran5:amd64 (14.2.0-7ubuntu1) ... 68s Selecting previously unselected package liblapack3:amd64. 68s Preparing to unpack .../011-liblapack3_3.12.0-3build2_amd64.deb ... 68s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 68s Selecting previously unselected package libarpack2t64:amd64. 68s Preparing to unpack .../012-libarpack2t64_3.9.1-1.1ubuntu1_amd64.deb ... 68s Unpacking libarpack2t64:amd64 (3.9.1-1.1ubuntu1) ... 68s Selecting previously unselected package libsuperlu6:amd64. 68s Preparing to unpack .../013-libsuperlu6_6.0.1+dfsg1-1build3_amd64.deb ... 68s Unpacking libsuperlu6:amd64 (6.0.1+dfsg1-1build3) ... 68s Selecting previously unselected package libarmadillo14. 68s Preparing to unpack .../014-libarmadillo14_1%3a14.0.1+dfsg-2_amd64.deb ... 68s Unpacking libarmadillo14 (1:14.0.1+dfsg-2) ... 69s Selecting previously unselected package libsnappy1v5:amd64. 69s Preparing to unpack .../015-libsnappy1v5_1.2.1-1_amd64.deb ... 69s Unpacking libsnappy1v5:amd64 (1.2.1-1) ... 69s Selecting previously unselected package libblosc1:amd64. 69s Preparing to unpack .../016-libblosc1_1.21.5+ds-1build1_amd64.deb ... 69s Unpacking libblosc1:amd64 (1.21.5+ds-1build1) ... 69s Selecting previously unselected package libpixman-1-0:amd64. 69s Preparing to unpack .../017-libpixman-1-0_0.42.2-1build1_amd64.deb ... 69s Unpacking libpixman-1-0:amd64 (0.42.2-1build1) ... 69s Selecting previously unselected package libxcb-render0:amd64. 69s Preparing to unpack .../018-libxcb-render0_1.17.0-2_amd64.deb ... 69s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 69s Selecting previously unselected package libxcb-shm0:amd64. 69s Preparing to unpack .../019-libxcb-shm0_1.17.0-2_amd64.deb ... 69s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 69s Selecting previously unselected package libxrender1:amd64. 69s Preparing to unpack .../020-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 69s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 69s Selecting previously unselected package libcairo2:amd64. 69s Preparing to unpack .../021-libcairo2_1.18.2-2_amd64.deb ... 69s Unpacking libcairo2:amd64 (1.18.2-2) ... 69s Selecting previously unselected package libcfitsio10t64:amd64. 69s Preparing to unpack .../022-libcfitsio10t64_4.4.1-2_amd64.deb ... 69s Unpacking libcfitsio10t64:amd64 (4.4.1-2) ... 69s Selecting previously unselected package libdatrie1:amd64. 69s Preparing to unpack .../023-libdatrie1_0.2.13-3build1_amd64.deb ... 69s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 69s Selecting previously unselected package libde265-0:amd64. 69s Preparing to unpack .../024-libde265-0_1.0.15-1build4_amd64.deb ... 69s Unpacking libde265-0:amd64 (1.0.15-1build4) ... 69s Selecting previously unselected package libdeflate0:amd64. 69s Preparing to unpack .../025-libdeflate0_1.21-1_amd64.deb ... 69s Unpacking libdeflate0:amd64 (1.21-1) ... 69s Selecting previously unselected package libfyba0t64:amd64. 69s Preparing to unpack .../026-libfyba0t64_4.1.1-11build1_amd64.deb ... 69s Unpacking libfyba0t64:amd64 (4.1.1-11build1) ... 69s Selecting previously unselected package libminizip1t64:amd64. 69s Preparing to unpack .../027-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 69s Unpacking libminizip1t64:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 69s Selecting previously unselected package libfreexl1:amd64. 69s Preparing to unpack .../028-libfreexl1_2.0.0-1build2_amd64.deb ... 69s Unpacking libfreexl1:amd64 (2.0.0-1build2) ... 69s Selecting previously unselected package libgeos3.12.2:amd64. 69s Preparing to unpack .../029-libgeos3.12.2_3.12.2-1_amd64.deb ... 69s Unpacking libgeos3.12.2:amd64 (3.12.2-1) ... 69s Selecting previously unselected package libgeos-c1t64:amd64. 69s Preparing to unpack .../030-libgeos-c1t64_3.12.2-1_amd64.deb ... 69s Unpacking libgeos-c1t64:amd64 (3.12.2-1) ... 69s Selecting previously unselected package proj-data. 69s Preparing to unpack .../031-proj-data_9.4.1-1_all.deb ... 69s Unpacking proj-data (9.4.1-1) ... 69s Selecting previously unselected package libjbig0:amd64. 69s Preparing to unpack .../032-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 69s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 69s Selecting previously unselected package libjpeg-turbo8:amd64. 69s Preparing to unpack .../033-libjpeg-turbo8_2.1.5-2ubuntu2_amd64.deb ... 69s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 69s Selecting previously unselected package libjpeg8:amd64. 69s Preparing to unpack .../034-libjpeg8_8c-2ubuntu11_amd64.deb ... 69s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 69s Selecting previously unselected package liblerc4:amd64. 69s Preparing to unpack .../035-liblerc4_4.0.0+ds-4ubuntu2_amd64.deb ... 69s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu2) ... 69s Selecting previously unselected package libsharpyuv0:amd64. 69s Preparing to unpack .../036-libsharpyuv0_1.4.0-0.1_amd64.deb ... 69s Unpacking libsharpyuv0:amd64 (1.4.0-0.1) ... 69s Selecting previously unselected package libwebp7:amd64. 69s Preparing to unpack .../037-libwebp7_1.4.0-0.1_amd64.deb ... 69s Unpacking libwebp7:amd64 (1.4.0-0.1) ... 69s Selecting previously unselected package libtiff6:amd64. 69s Preparing to unpack .../038-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 69s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 70s Selecting previously unselected package libproj25:amd64. 70s Preparing to unpack .../039-libproj25_9.4.1-1_amd64.deb ... 70s Unpacking libproj25:amd64 (9.4.1-1) ... 70s Selecting previously unselected package libgeotiff5:amd64. 70s Preparing to unpack .../040-libgeotiff5_1.7.3-1_amd64.deb ... 70s Unpacking libgeotiff5:amd64 (1.7.3-1) ... 70s Selecting previously unselected package libgif7:amd64. 70s Preparing to unpack .../041-libgif7_5.2.2-1ubuntu1_amd64.deb ... 70s Unpacking libgif7:amd64 (5.2.2-1ubuntu1) ... 70s Selecting previously unselected package libsz2:amd64. 70s Preparing to unpack .../042-libsz2_1.1.3-1_amd64.deb ... 70s Unpacking libsz2:amd64 (1.1.3-1) ... 70s Selecting previously unselected package libhdf4-0-alt:amd64. 70s Preparing to unpack .../043-libhdf4-0-alt_4.3.0-1_amd64.deb ... 70s Unpacking libhdf4-0-alt:amd64 (4.3.0-1) ... 70s Selecting previously unselected package libhdf5-103-1t64:amd64. 70s Preparing to unpack .../044-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 70s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 70s Selecting previously unselected package libheif-plugin-aomdec:amd64. 70s Preparing to unpack .../045-libheif-plugin-aomdec_1.18.1-2_amd64.deb ... 70s Unpacking libheif-plugin-aomdec:amd64 (1.18.1-2) ... 70s Selecting previously unselected package libheif-plugin-libde265:amd64. 70s Preparing to unpack .../046-libheif-plugin-libde265_1.18.1-2_amd64.deb ... 70s Unpacking libheif-plugin-libde265:amd64 (1.18.1-2) ... 70s Selecting previously unselected package libheif1:amd64. 70s Preparing to unpack .../047-libheif1_1.18.1-2_amd64.deb ... 70s Unpacking libheif1:amd64 (1.18.1-2) ... 70s Selecting previously unselected package liburiparser1:amd64. 70s Preparing to unpack .../048-liburiparser1_0.9.8+dfsg-1_amd64.deb ... 70s Unpacking liburiparser1:amd64 (0.9.8+dfsg-1) ... 70s Selecting previously unselected package libkmlbase1t64:amd64. 70s Preparing to unpack .../049-libkmlbase1t64_1.3.0-12build1_amd64.deb ... 70s Unpacking libkmlbase1t64:amd64 (1.3.0-12build1) ... 70s Selecting previously unselected package libkmldom1t64:amd64. 70s Preparing to unpack .../050-libkmldom1t64_1.3.0-12build1_amd64.deb ... 70s Unpacking libkmldom1t64:amd64 (1.3.0-12build1) ... 70s Selecting previously unselected package libkmlengine1t64:amd64. 70s Preparing to unpack .../051-libkmlengine1t64_1.3.0-12build1_amd64.deb ... 70s Unpacking libkmlengine1t64:amd64 (1.3.0-12build1) ... 70s Selecting previously unselected package mysql-common. 70s Preparing to unpack .../052-mysql-common_5.8+1.1.1_all.deb ... 70s Unpacking mysql-common (5.8+1.1.1) ... 70s Selecting previously unselected package libmysqlclient21:amd64. 70s Preparing to unpack .../053-libmysqlclient21_8.0.39-1_amd64.deb ... 70s Unpacking libmysqlclient21:amd64 (8.0.39-1) ... 70s Selecting previously unselected package libhdf5-hl-100t64:amd64. 70s Preparing to unpack .../054-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 70s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 70s Selecting previously unselected package libnetcdf19t64:amd64. 70s Preparing to unpack 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libogdi4.1:amd64 (4.1.1+ds-4) ... 70s Selecting previously unselected package libopenjp2-7:amd64. 70s Preparing to unpack .../061-libopenjp2-7_2.5.0-2ubuntu1_amd64.deb ... 70s Unpacking libopenjp2-7:amd64 (2.5.0-2ubuntu1) ... 70s Selecting previously unselected package liblcms2-2:amd64. 70s Preparing to unpack .../062-liblcms2-2_2.14-2build1_amd64.deb ... 70s Unpacking liblcms2-2:amd64 (2.14-2build1) ... 70s Selecting previously unselected package libpoppler140:amd64. 70s Preparing to unpack .../063-libpoppler140_24.08.0-1_amd64.deb ... 70s Unpacking libpoppler140:amd64 (24.08.0-1) ... 70s Selecting previously unselected package libpq5:amd64. 70s Preparing to unpack .../064-libpq5_17.0-1_amd64.deb ... 70s Unpacking libpq5:amd64 (17.0-1) ... 71s Selecting previously unselected package libqhull-r8.0:amd64. 71s Preparing to unpack .../065-libqhull-r8.0_2020.2-6build1_amd64.deb ... 71s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 71s Selecting previously unselected package librttopo1:amd64. 71s Preparing to unpack .../066-librttopo1_1.1.0-3build2_amd64.deb ... 71s Unpacking librttopo1:amd64 (1.1.0-3build2) ... 71s Selecting previously unselected package libspatialite8t64:amd64. 71s Preparing to unpack .../067-libspatialite8t64_5.1.0-3build1_amd64.deb ... 71s Unpacking libspatialite8t64:amd64 (5.1.0-3build1) ... 71s Selecting previously unselected package libxerces-c3.2t64:amd64. 71s Preparing to unpack .../068-libxerces-c3.2t64_3.2.4+debian-1.3_amd64.deb ... 71s Unpacking libxerces-c3.2t64:amd64 (3.2.4+debian-1.3) ... 71s Selecting previously unselected package libgdal35:amd64. 71s Preparing to unpack .../069-libgdal35_3.9.1+dfsg-1build2_amd64.deb ... 71s Unpacking libgdal35:amd64 (3.9.1+dfsg-1build2) ... 71s Selecting previously unselected package libgomp1:amd64. 71s Preparing to unpack .../070-libgomp1_14.2.0-7ubuntu1_amd64.deb ... 71s Unpacking libgomp1:amd64 (14.2.0-7ubuntu1) ... 71s Selecting previously unselected package libgraphite2-3:amd64. 71s 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libthai0:amd64 (0.1.29-2build1) ... 71s Selecting previously unselected package libpango-1.0-0:amd64. 71s Preparing to unpack .../077-libpango-1.0-0_1.54.0+ds-2_amd64.deb ... 71s Unpacking libpango-1.0-0:amd64 (1.54.0+ds-2) ... 71s Selecting previously unselected package libpangoft2-1.0-0:amd64. 71s Preparing to unpack .../078-libpangoft2-1.0-0_1.54.0+ds-2_amd64.deb ... 71s Unpacking libpangoft2-1.0-0:amd64 (1.54.0+ds-2) ... 71s Selecting previously unselected package libpangocairo-1.0-0:amd64. 71s Preparing to unpack .../079-libpangocairo-1.0-0_1.54.0+ds-2_amd64.deb ... 71s Unpacking libpangocairo-1.0-0:amd64 (1.54.0+ds-2) ... 71s Selecting previously unselected package libpaper1:amd64. 71s Preparing to unpack .../080-libpaper1_1.1.29build1_amd64.deb ... 71s Unpacking libpaper1:amd64 (1.1.29build1) ... 71s Selecting previously unselected package libpaper-utils. 71s Preparing to unpack .../081-libpaper-utils_1.1.29build1_amd64.deb ... 71s Unpacking libpaper-utils (1.1.29build1) ... 71s Selecting previously unselected package libsm6:amd64. 71s Preparing to unpack .../082-libsm6_2%3a1.2.3-1build3_amd64.deb ... 71s Unpacking libsm6:amd64 (2:1.2.3-1build3) ... 71s Selecting previously unselected package libtcl8.6:amd64. 71s Preparing to unpack .../083-libtcl8.6_8.6.14+dfsg-1build1_amd64.deb ... 71s Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 71s Selecting previously unselected package libxft2:amd64. 71s Preparing to unpack .../084-libxft2_2.3.6-1build1_amd64.deb ... 71s Unpacking libxft2:amd64 (2.3.6-1build1) ... 72s Selecting previously unselected package libxss1:amd64. 72s Preparing to unpack .../085-libxss1_1%3a1.2.3-1build3_amd64.deb ... 72s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 72s Selecting previously unselected package libtk8.6:amd64. 72s Preparing to unpack .../086-libtk8.6_8.6.14-1build1_amd64.deb ... 72s Unpacking libtk8.6:amd64 (8.6.14-1build1) ... 72s Selecting previously unselected package libudunits2-data. 72s Preparing to unpack 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72s Preparing to unpack .../093-r-base-core_4.4.1-1_amd64.deb ... 72s Unpacking r-base-core (4.4.1-1) ... 72s Selecting previously unselected package r-cran-littler. 72s Preparing to unpack .../094-r-cran-littler_0.3.20-1_amd64.deb ... 72s Unpacking r-cran-littler (0.3.20-1) ... 72s Selecting previously unselected package littler. 72s Preparing to unpack .../095-littler_0.3.20-1_all.deb ... 72s Unpacking littler (0.3.20-1) ... 72s Selecting previously unselected package r-cran-abind. 72s Preparing to unpack .../096-r-cran-abind_1.4-5-2_all.deb ... 72s Unpacking r-cran-abind (1.4-5-2) ... 72s Selecting previously unselected package r-cran-mass. 72s Preparing to unpack .../097-r-cran-mass_7.3-61-1_amd64.deb ... 72s Unpacking r-cran-mass (7.3-61-1) ... 72s Selecting previously unselected package r-cran-class. 72s Preparing to unpack .../098-r-cran-class_7.3-22-2build1_amd64.deb ... 72s Unpacking r-cran-class (7.3-22-2build1) ... 72s Selecting previously unselected package r-cran-proxy. 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previously unselected package r-cran-digest. 73s Preparing to unpack .../105-r-cran-digest_0.6.36-1_amd64.deb ... 73s Unpacking r-cran-digest (0.6.36-1) ... 73s Selecting previously unselected package r-cran-dotcall64. 73s Preparing to unpack .../106-r-cran-dotcall64_1.1-1-1_amd64.deb ... 73s Unpacking r-cran-dotcall64 (1.1-1-1) ... 73s Selecting previously unselected package r-cran-pkgkitten. 73s Preparing to unpack .../107-r-cran-pkgkitten_0.2.4-1_all.deb ... 73s Unpacking r-cran-pkgkitten (0.2.4-1) ... 73s Selecting previously unselected package r-cran-rcpp. 73s Preparing to unpack .../108-r-cran-rcpp_1.0.13-1_amd64.deb ... 73s Unpacking r-cran-rcpp (1.0.13-1) ... 73s Selecting previously unselected package r-cran-spam. 73s Preparing to unpack .../109-r-cran-spam_2.10-0-1_amd64.deb ... 73s Unpacking r-cran-spam (2.10-0-1) ... 73s Selecting previously unselected package r-cran-viridislite. 73s Preparing to unpack .../110-r-cran-viridislite_0.4.2-2_all.deb ... 73s Unpacking 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libgdal35:amd64 (3.9.1+dfsg-1build2) ... 78s Setting up r-cran-terra (1.7-78-1) ... 78s Setting up r-cran-sf (1.0-16+dfsg-1build1) ... 78s Setting up r-cran-stars (0.6-6-1) ... 78s Setting up r-cran-sftime (0.2-0-6) ... 78s Setting up r-cran-gstat (2.1-1-2) ... 78s Setting up r-cran-raster (3.6-26-1) ... 78s Setting up autopkgtest-satdep (0) ... 78s Processing triggers for libc-bin (2.40-1ubuntu3) ... 78s Processing triggers for man-db (2.12.1-3) ... 79s Processing triggers for install-info (7.1.1-1) ... 86s (Reading database ... 81914 files and directories currently installed.) 86s Removing autopkgtest-satdep (0) ... 86s autopkgtest [16:09:25]: test run-unit-test: [----------------------- 86s BEGIN TEST allier.R 86s 86s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 86s Copyright (C) 2024 The R Foundation for Statistical Computing 86s Platform: x86_64-pc-linux-gnu 86s 86s R is free software and comes with ABSOLUTELY NO WARRANTY. 86s You are welcome to redistribute it under certain conditions. 86s Type 'license()' or 'licence()' for distribution details. 86s 86s R is a collaborative project with many contributors. 86s Type 'contributors()' for more information and 86s 'citation()' on how to cite R or R packages in publications. 86s 86s Type 'demo()' for some demos, 'help()' for on-line help, or 86s 'help.start()' for an HTML browser interface to help. 86s Type 'q()' to quit R. 86s 86s > # Sytze de Bruin's post to r-sig-geo, Nov 16, 2015: 86s > library(sp) 86s > library(gstat) 87s > 87s > # some data 87s > x <- c(215, 330, 410, 470, 545) 87s > y <- c(230, 310, 330, 340, 365) 87s > fc <- c(0.211, 0.251, 0.281, 0.262, 0.242) 87s > por <- c(0.438, 0.457, 0.419, 0.430, 0.468) 87s > Allier <- data.frame(x, y, fc, por) 87s > coordinates(Allier) = ~x+y 87s > 87s > # gstat object for co-kriging using linear model of co-regionalization 87s > g <- gstat(id=c("fc"), formula=fc~1, data=Allier, 87s + model=vgm(0.00247, "Sph", 480, 0.00166)) 87s > g <- gstat(g, id="por", formula=por~1, data=Allier, 87s + model=vgm(0.00239, "Sph", 480, 0.00118)) 87s > g <- gstat(g, id=c("fc", "por"), 87s + model=vgm(0.00151, "Sph", 480, -0.00124)) 87s > 87s > # predict at single point 87s > g$set = list(choleski = 0) # LDL' 87s > A <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 87s Linear Model of Coregionalization found. Good. 87s [using ordinary cokriging] 87s we're at location X: 450 Y: 350 Z: 0 87s zero block size 87s we're at point X: 450 Y: 350 Z: 0 87s 87s # X: 87s #Matrix: 10 by 2 87s rbind( 87s c( 1.000000, 0.000000), # row 1 87s c( 1.000000, 0.000000), # row 2 87s c( 1.000000, 0.000000), # row 3 87s c( 1.000000, 0.000000), # row 4 87s c( 1.000000, 0.000000), # row 5 87s c( 0.000000, 1.000000), # row 6 87s c( 0.000000, 1.000000), # row 7 87s c( 0.000000, 1.000000), # row 8 87s c( 0.000000, 1.000000), # row 9 87s c( 0.000000, 1.000000) # row 10 87s ) 87s [using generalized covariances: max_val - semivariance()] 87s # Covariances (x_i, x_j) matrix C (upper triangle): 87s #Matrix: 10 by 10 87s rbind( 87s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 87s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 87s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 87s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 87s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 87s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 87s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 87s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 87s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 87s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 87s ) 87s 87s # glm->C, LDL' decomposed:: 87s #Matrix: 10 by 10 87s rbind( 87s c( 0.003399, 0.372269, 0.208612, 0.127967, 0.016746, -0.025847, 0.223862, 0.148767, 0.104047, 0.038371), # row 1 87s c( 0.000000, 0.002661, 0.483725, 0.327484, 0.153742, 0.233021, -0.125118, 0.262410, 0.219271, 0.150536), # row 2 87s c( 0.000000, 0.000000, 0.002276, 0.540203, 0.303585, 0.058071, 0.314376, -0.175899, 0.295181, 0.243817), # row 3 87s c( 0.000000, 0.000000, 0.000000, 0.002484, 0.483068, 0.000301, 0.115816, 0.377362, -0.115338, 0.319418), # row 4 87s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.003690, -0.038142, 0.000474, 0.120915, 0.377730, 0.075630), # row 5 87s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003019, 0.354325, 0.235465, 0.164684, 0.060733), # row 6 87s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002623, 0.415337, 0.347059, 0.238266), # row 7 87s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002458, 0.467207, 0.385909), # row 8 87s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002658, 0.505569), # row 9 87s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003570) # row 10 87s ) 87s 87s # X'C-1 X: 87s #Matrix: 2 by 2 87s rbind( 87s c(665.433994, -232.313340), # row 1 87s c(-232.313340, 729.440848) # row 2 87s ) 87s 87s # beta: 87s #Vector: dim: 2 87s c( 0.244216, 0.440933) 87s # Cov(beta), (X'C-1 X)-1: 87s #Matrix: 2 by 2 87s rbind( 87s c( 0.001691, 0.000538), # row 1 87s c( 0.000538, 0.001542) # row 2 87s ) 87s 87s # Corr(beta): 87s #Matrix: 2 by 2 87s rbind( 87s c( 1.000000, 0.333447), # row 1 87s c( 0.333447, 1.000000) # row 2 87s ) 87s 87s # X0 (X values at prediction location x0): 87s #Matrix: 2 by 2 87s rbind( 87s c( 1.000000, 0.000000), # row 1 87s c( 0.000000, 1.000000) # row 2 87s ) 87s 87s # BLUE(mu), E(y(x0)) = X0'beta: 87s #Vector: dim: 2 87s c( 0.244216, 0.440933) 87s # Covariances (x_i, x_0), C0: 87s #Matrix: 10 by 2 87s rbind( 87s c( 0.000638, 0.000390), # row 1 87s c( 0.001516, 0.000927), # row 2 87s c( 0.002126, 0.001300), # row 3 87s c( 0.002298, 0.001405), # row 4 87s c( 0.001738, 0.001062), # row 5 87s c( 0.000390, 0.000618), # row 6 87s c( 0.000927, 0.001467), # row 7 87s c( 0.001300, 0.002057), # row 8 87s c( 0.001405, 0.002223), # row 9 87s c( 0.001062, 0.001681) # row 10 87s ) 87s 87s # C-1 C0: 87s #Matrix: 10 by 2 87s rbind( 87s c( 0.008927, -0.017995), # row 1 87s c( 0.061935, -0.028550), # row 2 87s c( 0.225195, 0.078344), # row 3 87s c( 0.356735, 0.190177), # row 4 87s c( 0.094128, -0.023136), # row 5 87s c(-0.021119, 0.004935), # row 6 87s c(-0.033508, 0.055601), # row 7 87s c( 0.091947, 0.242576), # row 8 87s c( 0.223200, 0.398927), # row 9 87s c(-0.027153, 0.088995) # row 10 87s ) 87s 87s # [a] Cov_ij(B,B) or Cov_ij(0,0): 87s #Matrix: 2 by 2 87s rbind( 87s c( 0.004130, 0.000270), # row 1 87s c( 0.000270, 0.003570) # row 2 87s ) 87s 87s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 87s #Matrix: 2 by 2 87s rbind( 87s c( 0.000129, -0.000107), # row 1 87s c(-0.000107, 0.000089) # row 2 87s ) 87s 87s # [b] c0'C-1 c0: 87s #Matrix: 2 by 2 87s rbind( 87s c( 0.001926, 0.001532), # row 1 87s c( 0.001532, 0.001931) # row 2 87s ) 87s 87s # Best Linear Unbiased Predictor: 87s #Vector: dim: 2 87s c( 0.253090, 0.441258) 87s # MSPE ([a]-[b]+[c]): 87s #Matrix: 2 by 2 87s rbind( 87s c( 0.002332, -0.001369), # row 1 87s c(-0.001369, 0.001729) # row 2 87s ) 87s 87s # kriging weights: 87s #Matrix: 10 by 2 87s rbind( 87s c( 0.071177, -0.064988), # row 1 87s c( 0.108451, -0.066123), # row 2 87s c( 0.268160, 0.043141), # row 3 87s c( 0.401959, 0.153312), # row 4 87s c( 0.150253, -0.065342), # row 5 87s c(-0.076273, 0.056759), # row 6 87s c(-0.077605, 0.093781), # row 7 87s c( 0.050632, 0.277731), # row 8 87s c( 0.179933, 0.435972), # row 9 87s c(-0.076688, 0.135756) # row 10 87s ) 87s 87s 87s > g$set = list(choleski = 1) # Choleski 87s > B <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 87s Linear Model of Coregionalization found. Good. 87s [using ordinary cokriging] 87s we're at location X: 450 Y: 350 Z: 0 87s zero block size 87s we're at point X: 450 Y: 350 Z: 0 87s 87s # X: 87s #Matrix: 10 by 2 87s rbind( 87s c( 1.000000, 0.000000), # row 1 87s c( 1.000000, 0.000000), # row 2 87s c( 1.000000, 0.000000), # row 3 87s c( 1.000000, 0.000000), # row 4 87s c( 1.000000, 0.000000), # row 5 87s c( 0.000000, 1.000000), # row 6 87s c( 0.000000, 1.000000), # row 7 87s c( 0.000000, 1.000000), # row 8 87s c( 0.000000, 1.000000), # row 9 87s c( 0.000000, 1.000000) # row 10 87s ) 87s [using generalized covariances: max_val - semivariance()] 87s # Covariances (x_i, x_j) matrix C (upper triangle): 87s #Matrix: 10 by 10 87s rbind( 87s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 87s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 87s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 87s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 87s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 87s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 87s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 87s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 87s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 87s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 87s ) 87s 87s # glm->C, Choleski decomposed:: 87s #Matrix: 10 by 10 87s rbind( 87s c( 0.064265, 0.022086, 0.013942, 0.008801, 0.003487, 0.004201, 0.013502, 0.008523, 0.005380, 0.002132), # row 1 87s c( 0.000000, 0.060351, 0.025382, 0.019938, 0.013290, 0.012840, -0.000468, 0.015517, 0.012189, 0.008125), # row 2 87s c( 0.000000, 0.000000, 0.057370, 0.023954, 0.018091, 0.002846, 0.016530, -0.004230, 0.014644, 0.011059), # row 3 87s c( 0.000000, 0.000000, 0.000000, 0.055509, 0.020471, -0.000277, 0.006286, 0.016960, -0.006686, 0.012514), # row 4 87s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.056523, -0.001665, 0.001218, 0.006437, 0.014711, -0.005337), # row 5 87s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.058108, 0.022018, 0.011347, 0.006008, 0.001147), # row 6 87s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.050877, 0.027084, 0.018381, 0.010720), # row 7 87s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.045247, 0.026914, 0.017658), # row 8 87s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.042645, 0.023811), # row 9 87s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.046872) # row 10 87s ) 87s 87s # X'C-1 X: 87s #Matrix: 2 by 2 87s rbind( 87s c(665.433994, -232.313340), # row 1 87s c(-232.313340, 729.440848) # row 2 87s ) 87s 87s # beta: 87s #Vector: dim: 2 87s c( 0.244216, 0.440933) 87s # Cov(beta), (X'C-1 X)-1: 87s #Matrix: 2 by 2 87s rbind( 87s c( 0.001691, 0.000538), # row 1 87s c( 0.000538, 0.001542) # row 2 87s ) 87s 87s # Corr(beta): 87s #Matrix: 2 by 2 87s rbind( 87s c( 1.000000, 0.333447), # row 1 87s c( 0.333447, 1.000000) # row 2 87s ) 87s 87s # X0 (X values at prediction location x0): 87s #Matrix: 2 by 2 87s rbind( 87s c( 1.000000, 0.000000), # row 1 87s c( 0.000000, 1.000000) # row 2 87s ) 87s 87s # BLUE(mu), E(y(x0)) = X0'beta: 87s #Vector: dim: 2 87s c( 0.244216, 0.440933) 87s # Covariances (x_i, x_0), C0: 87s #Matrix: 10 by 2 87s rbind( 87s c( 0.000638, 0.000390), # row 1 87s c( 0.001516, 0.000927), # row 2 87s c( 0.002126, 0.001300), # row 3 87s c( 0.002298, 0.001405), # row 4 87s c( 0.001738, 0.001062), # row 5 87s c( 0.000390, 0.000618), # row 6 87s c( 0.000927, 0.001467), # row 7 87s c( 0.001300, 0.002057), # row 8 87s c( 0.001405, 0.002223), # row 9 87s c( 0.001062, 0.001681) # row 10 87s ) 87s 87s # C-1 C0: 87s #Matrix: 10 by 2 87s rbind( 87s c( 0.008927, -0.017995), # row 1 87s c( 0.061935, -0.028550), # row 2 87s c( 0.225195, 0.078344), # row 3 87s c( 0.356735, 0.190177), # row 4 87s c( 0.094128, -0.023136), # row 5 87s c(-0.021119, 0.004935), # row 6 87s c(-0.033508, 0.055601), # row 7 87s c( 0.091947, 0.242576), # row 8 87s c( 0.223200, 0.398927), # row 9 87s c(-0.027153, 0.088995) # row 10 87s ) 87s 87s # [a] Cov_ij(B,B) or Cov_ij(0,0): 87s #Matrix: 2 by 2 87s rbind( 87s c( 0.004130, 0.000270), # row 1 87s c( 0.000270, 0.003570) # row 2 87s ) 87s 87s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 87s #Matrix: 2 by 2 87s rbind( 87s c( 0.000129, -0.000107), # row 1 87s c(-0.000107, 0.000089) # row 2 87s ) 87s 87s # [b] c0'C-1 c0: 87s #Matrix: 2 by 2 87s rbind( 87s c( 0.001926, 0.001532), # row 1 87s c( 0.001532, 0.001931) # row 2 87s ) 87s 87s # Best Linear Unbiased Predictor: 87s #Vector: dim: 2 87s c( 0.253090, 0.441258) 87s # MSPE ([a]-[b]+[c]): 87s #Matrix: 2 by 2 87s rbind( 87s c( 0.002332, -0.001369), # row 1 87s c(-0.001369, 0.001729) # row 2 87s ) 87s 87s # kriging weights: 87s #Matrix: 10 by 2 87s rbind( 87s c( 0.071177, -0.064988), # row 1 87s c( 0.108451, -0.066123), # row 2 87s c( 0.268160, 0.043141), # row 3 87s c( 0.401959, 0.153312), # row 4 87s c( 0.150253, -0.065342), # row 5 87s c(-0.076273, 0.056759), # row 6 87s c(-0.077605, 0.093781), # row 7 87s c( 0.050632, 0.277731), # row 8 87s c( 0.179933, 0.435972), # row 9 87s c(-0.076688, 0.135756) # row 10 87s ) 87s 87s 87s > all.equal(A,B) 87s [1] TRUE 87s > 87s > # TRUE 87s > 87s BEGIN TEST blockkr.R 87s 87s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 87s Copyright (C) 2024 The R Foundation for Statistical Computing 87s Platform: x86_64-pc-linux-gnu 87s 87s R is free software and comes with ABSOLUTELY NO WARRANTY. 87s You are welcome to redistribute it under certain conditions. 87s Type 'license()' or 'licence()' for distribution details. 87s 87s R is a collaborative project with many contributors. 87s Type 'contributors()' for more information and 87s 'citation()' on how to cite R or R packages in publications. 87s 87s Type 'demo()' for some demos, 'help()' for on-line help, or 87s 'help.start()' for an HTML browser interface to help. 87s Type 'q()' to quit R. 87s 87s > library(sp) 87s > data(meuse) 87s > coordinates(meuse) = c("x", "y") 87s > new.locs <- SpatialPoints(data.frame( 87s + x = c(181170, 180310, 180205, 178673, 178770, 178270), 87s + y = c(333250, 332189, 331707, 330066, 330675, 331075))) 87s > library(gstat) 88s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 88s + block = c(40,40), nmax = 40) 88s [using ordinary kriging] 88s coordinates var1.pred var1.var 88s 1 (181170, 333250) 268.7576 19447.67 88s 2 (180310, 332189) 663.4915 16991.33 88s 3 (180205, 331707) 251.4606 21579.71 88s 4 (178673, 330066) 532.5776 73807.91 88s 5 (178770, 330675) 664.4039 23589.17 88s 6 (178270, 331075) 565.5436 155113.23 88s > 88s > new.locs <- SpatialPoints(data.frame(x = c(181170), y = c(333250))) 88s > 88s > disc = c(-15,-5,5,15) 88s > block.irreg <- data.frame(expand.grid(x = disc, y = disc)) 88s > block.irreg 88s x y 88s 1 -15 -15 88s 2 -5 -15 88s 3 5 -15 88s 4 15 -15 88s 5 -15 -5 88s 6 -5 -5 88s 7 5 -5 88s 8 15 -5 88s 9 -15 5 88s 10 -5 5 88s 11 5 5 88s 12 15 5 88s 13 -15 15 88s 14 -5 15 88s 15 5 15 88s 16 15 15 88s > 88s > # first disable default Gaussian quadrature used for block integration, by 88s > # setting nblockdiscr explicitly: 88s > krige(zinc ~ 1, meuse, new.locs, model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 88s + block = c(40,40), nmax = 40, set = list(nblockdiscr=4)) 88s [using ordinary kriging] 88s coordinates var1.pred var1.var 88s 1 (181170, 333250) 268.7324 19568.76 88s > # now pass the same block discretization as block.irreg: 88s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 88s + block = block.irreg, nmax = 40) 88s [using ordinary kriging] 88s coordinates var1.pred var1.var 88s 1 (181170, 333250) 268.7324 19568.76 88s > # check weights argument: 88s > block.irreg <- data.frame(expand.grid(x = disc, y = disc), weights = rep(1/16, 16)) 88s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 88s + block = block.irreg, nmax = 40) 88s [using ordinary kriging] 88s coordinates var1.pred var1.var 88s 1 (181170, 333250) 268.7324 19568.76 88s > 88s BEGIN TEST covtable.R 88s 88s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 88s Copyright (C) 2024 The R Foundation for Statistical Computing 88s Platform: x86_64-pc-linux-gnu 88s 88s R is free software and comes with ABSOLUTELY NO WARRANTY. 88s You are welcome to redistribute it under certain conditions. 88s Type 'license()' or 'licence()' for distribution details. 88s 88s R is a collaborative project with many contributors. 88s Type 'contributors()' for more information and 88s 'citation()' on how to cite R or R packages in publications. 88s 88s Type 'demo()' for some demos, 'help()' for on-line help, or 88s 'help.start()' for an HTML browser interface to help. 88s Type 'q()' to quit R. 88s 88s > library(gstat) 89s > d=expand.grid(x=c(-.5,.5), y=c(-.5,.5)) 89s > d$z=1:4 89s > vv=vgm(model = "Tab", covtable = 89s + variogramLine(vgm(1, "Sph", 1), 1, n=1e4,min = 0, covariance = TRUE)) 89s > vv 89s model psill maxdist 89s 1 Tab NA 1 89s covariance table: 89s [1] 1.0000000 0.7039712 0.4319496 0.2080384 0.0560108 0.0000000 89s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vgm(1, "Sph", 1)) 89s [using ordinary kriging] 89s x y var1.pred var1.var 89s 1 0 0 2.5 1.017767 89s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vv) 89s [using ordinary kriging] 89s x y var1.pred var1.var 89s 1 0 0 2.5 1.017863 89s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vgm(1, "Sph", 1)) 89s [using ordinary kriging] 89s x y var1.pred var1.var 89s 1 0 0 1.5 1.267767 89s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vv) 89s [using ordinary kriging] 89s x y var1.pred var1.var 89s 1 0 0 1.5 1.267863 89s > 89s BEGIN TEST cv.R 90s 90s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 90s Copyright (C) 2024 The R Foundation for Statistical Computing 90s Platform: x86_64-pc-linux-gnu 90s 90s R is free software and comes with ABSOLUTELY NO WARRANTY. 90s You are welcome to redistribute it under certain conditions. 90s Type 'license()' or 'licence()' for distribution details. 90s 90s R is a collaborative project with many contributors. 90s Type 'contributors()' for more information and 90s 'citation()' on how to cite R or R packages in publications. 90s 90s Type 'demo()' for some demos, 'help()' for on-line help, or 90s 'help.start()' for an HTML browser interface to help. 90s Type 'q()' to quit R. 90s 90s > # try bivariate cokriging; cross validate first variable 90s > library(sp) 90s > data(meuse) 90s > library(gstat) 90s > g=gstat(NULL, "log-zinc", log(zinc)~1, ~x+y, meuse, nmax=10) 90s > g=gstat(g, "log-lead", log(lead)~1, ~x+y, meuse, nmax=10) 90s > g=gstat(g, "log-copper", log(copper)~1, ~x+y, meuse, nmax=10) 90s > v=variogram(g) 91s > g=gstat(g, model=vgm(1, "Sph", 1000), fill.all=T) 91s > g=fit.lmc(v, g) 91s > g 91s data: 91s log-zinc : formula = log(zinc)`~`1 ; data dim = 155 x 12 nmax = 10 91s log-lead : formula = log(lead)`~`1 ; data dim = 155 x 12 nmax = 10 91s log-copper : formula = log(copper)`~`1 ; data dim = 155 x 12 nmax = 10 91s variograms: 91s model psill range 91s log-zinc Sph 0.7132435 1000 91s log-lead Sph 0.6133020 1000 91s log-copper Sph 0.3634211 1000 91s log-zinc.log-lead Sph 0.6367012 1000 91s log-zinc.log-copper Sph 0.4570044 1000 91s log-lead.log-copper Sph 0.3934910 1000 91s ~x + y 91s > set.seed(13131) 91s > summary(gstat.cv(g, remove.all=TRUE, nfold=5)) 91s Intrinsic Correlation found. Good. 91s [using ordinary cokriging] 91s Intrinsic Correlation found. Good. 91s [using ordinary cokriging] 91s Intrinsic Correlation found. Good. 91s [using ordinary cokriging] 91s Intrinsic Correlation found. Good. 91s [using ordinary cokriging] 91s Intrinsic Correlation found. Good. 91s [using ordinary cokriging] 91s Warning message: 91s In checkNames(value) : 91s attempt to set invalid names: this may lead to problems later on. See ?make.names 91s log.zinc.pred log.zinc.var observed residual 91s Min. :4.779 Min. :0.05426 Min. :4.727 Min. :-1.317697 91s 1st Qu.:5.396 1st Qu.:0.10872 1st Qu.:5.288 1st Qu.:-0.230224 91s Median :5.858 Median :0.13745 Median :5.787 Median :-0.034374 91s Mean :5.895 Mean :0.15249 Mean :5.886 Mean :-0.009094 91s 3rd Qu.:6.367 3rd Qu.:0.18303 3rd Qu.:6.514 3rd Qu.: 0.244075 91s Max. :7.358 Max. :0.60571 Max. :7.517 Max. : 1.414147 91s zscore fold x y 91s Min. :-3.35764 Min. :1.000 Min. :178605 Min. :329714 91s 1st Qu.:-0.58683 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 91s Median :-0.10755 Median :3.000 Median :179991 Median :331633 91s Mean :-0.02766 Mean :2.852 Mean :180005 Mean :331635 91s 3rd Qu.: 0.70691 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 91s Max. : 3.43370 Max. :5.000 Max. :181390 Max. :333611 91s > summary(gstat.cv(g, remove.all=FALSE, nfold=5)) 91s Intrinsic Correlation found. Good. 91s [using ordinary cokriging] 91s Intrinsic Correlation found. Good. 91s [using ordinary cokriging] 91s Intrinsic Correlation found. Good. 91s [using ordinary cokriging] 91s Intrinsic Correlation found. Good. 91s [using ordinary cokriging] 91s Intrinsic Correlation found. Good. 91s [using ordinary cokriging] 91s log.zinc.pred log.zinc.var observed residual 91s Min. :4.644 Min. :0.002371 Min. :4.727 Min. :-0.4190977 91s 1st Qu.:5.308 1st Qu.:0.004975 1st Qu.:5.288 1st Qu.:-0.0773273 91s Median :5.777 Median :0.005875 Median :5.787 Median : 0.0006165 91s Mean :5.883 Mean :0.006609 Mean :5.886 Mean : 0.0026164 91s 3rd Qu.:6.422 3rd Qu.:0.007419 3rd Qu.:6.514 3rd Qu.: 0.0825770 91s Warning message: 91s In checkNames(value) : 91s attempt to set invalid names: this may lead to problems later on. See ?make.names 91s Max. :7.676 Max. :0.027247 Max. :7.517 Max. : 0.4659503 91s zscore fold x y 91s Min. :-4.793253 Min. :1.000 Min. :178605 Min. :329714 91s 1st Qu.:-1.080725 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 91s Median : 0.007242 Median :3.000 Median :179991 Median :331633 91s Mean : 0.050487 Mean :2.974 Mean :180005 Mean :331635 91s 3rd Qu.: 1.117469 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 91s Max. : 6.475831 Max. :5.000 Max. :181390 Max. :333611 91s > 91s BEGIN TEST cv3d.R 91s 91s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 91s Copyright (C) 2024 The R Foundation for Statistical Computing 91s Platform: x86_64-pc-linux-gnu 91s 91s R is free software and comes with ABSOLUTELY NO WARRANTY. 91s You are welcome to redistribute it under certain conditions. 91s Type 'license()' or 'licence()' for distribution details. 91s 91s R is a collaborative project with many contributors. 91s Type 'contributors()' for more information and 91s 'citation()' on how to cite R or R packages in publications. 91s 91s Type 'demo()' for some demos, 'help()' for on-line help, or 91s 'help.start()' for an HTML browser interface to help. 91s Type 'q()' to quit R. 91s 91s > options(digits = 4) 91s > set.seed(1131) 91s > d = data.frame(x=runif(50),y=runif(50),z=runif(50),v=rnorm(50)) 91s > library(gstat) 92s > xx = krige.cv(v~1,~x+y+z,d,model=vgm(1,"Exp",1), verbose=F, set=list(debug=0)) 93s > summary(xx) 93s var1.pred var1.var observed residual 93s Min. :-1.163 Min. :0.116 Min. :-2.240 Min. :-2.1755 93s 1st Qu.:-0.571 1st Qu.:0.175 1st Qu.:-0.876 1st Qu.:-0.7881 93s Median :-0.201 Median :0.192 Median :-0.219 Median : 0.1175 93s Mean :-0.165 Mean :0.208 Mean :-0.142 Mean : 0.0233 93s 3rd Qu.: 0.161 3rd Qu.:0.240 3rd Qu.: 0.500 3rd Qu.: 0.8508 93s Max. : 1.085 Max. :0.426 Max. : 1.857 Max. : 2.5224 93s zscore fold x y 93s Min. :-5.168 Min. : 1.0 Min. :0.0068 Min. :0.0034 93s 1st Qu.:-1.875 1st Qu.:13.2 1st Qu.:0.2397 1st Qu.:0.2466 93s Median : 0.245 Median :25.5 Median :0.4867 Median :0.4525 93s Mean : 0.017 Mean :25.5 Mean :0.4997 Mean :0.4969 93s 3rd Qu.: 2.020 3rd Qu.:37.8 3rd Qu.:0.7473 3rd Qu.:0.7394 93s Max. : 7.354 Max. :50.0 Max. :0.9875 Max. :0.9872 93s z 93s Min. :0.0016 93s 1st Qu.:0.1865 93s Median :0.4485 93s Mean :0.4714 93s 3rd Qu.:0.7240 93s Max. :0.9942 93s > 93s BEGIN TEST fit.R 93s 93s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 93s Copyright (C) 2024 The R Foundation for Statistical Computing 93s Platform: x86_64-pc-linux-gnu 93s 93s R is free software and comes with ABSOLUTELY NO WARRANTY. 93s You are welcome to redistribute it under certain conditions. 93s Type 'license()' or 'licence()' for distribution details. 93s 93s R is a collaborative project with many contributors. 93s Type 'contributors()' for more information and 93s 'citation()' on how to cite R or R packages in publications. 93s 93s Type 'demo()' for some demos, 'help()' for on-line help, or 93s 'help.start()' for an HTML browser interface to help. 93s Type 'q()' to quit R. 93s 93s > library(sp) 93s > data(meuse) 93s > library(gstat) 93s > v=variogram(log(zinc)~1,~x+y,meuse,cutoff=500,wi=100) 94s > v$gamma=c(0.5,1,2,3,3) 94s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=TRUE) 94s model psill range 94s 1 Nug 0.000000 0.00 94s 2 Sph 7.878195 1567.77 94s Warning message: 94s In fit.variogram(v, vgm(1, "Sph", 300, 0), warn.if.neg = TRUE) : 94s partial sill or nugget fixed at zero value 94s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=FALSE) 94s model psill range 94s 1 Nug 0.000000 0.00 94s 2 Sph 7.878195 1567.77 94s > 94s BEGIN TEST krige0.R 94s 94s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 94s Copyright (C) 2024 The R Foundation for Statistical Computing 94s Platform: x86_64-pc-linux-gnu 94s 94s R is free software and comes with ABSOLUTELY NO WARRANTY. 94s You are welcome to redistribute it under certain conditions. 94s Type 'license()' or 'licence()' for distribution details. 94s 94s R is a collaborative project with many contributors. 94s Type 'contributors()' for more information and 94s 'citation()' on how to cite R or R packages in publications. 94s 94s Type 'demo()' for some demos, 'help()' for on-line help, or 94s 'help.start()' for an HTML browser interface to help. 94s Type 'q()' to quit R. 94s 94s > # test -- load data: 94s > library(sp) 94s > data(meuse) 94s > coordinates(meuse) = ~x+y 94s > data(meuse.grid) 94s > gridded(meuse.grid) = ~x+y 94s > 94s > library(gstat) 95s > # test -- idw 95s > meuse.grid$idw <- idw0(zinc~1, meuse, meuse.grid)[,1] 95s > x <- idw(zinc~1, meuse, meuse.grid) 95s [inverse distance weighted interpolation] 95s > all.equal(x$var1.pred, meuse.grid$idw) 95s [1] TRUE 95s > spplot(meuse.grid["idw"],col.regions=bpy.colors()) 95s > v = vgm(1, "Exp", 500) 95s > # test sk: 95s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, beta = 500, computeVar = TRUE) 95s > rownames(x0$pred)=NULL 95s > x <- krige(zinc~1, meuse, meuse.grid, v, beta = 500) 95s [using simple kriging] 95s > all.equal(x$var1.pred, x0$pred[,1]) 95s [1] TRUE 95s > all.equal(x$var1.var, x0$var) 95s [1] TRUE 95s > # test ok: 95s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, computeVar = TRUE) 95s > rownames(x0$pred)=NULL 95s > names(x0$var)=NULL 95s > x <- krige(zinc~1, meuse, meuse.grid, v) 95s [using ordinary kriging] 95s > all.equal(x$var1.pred, x0$pred[,1]) 95s [1] TRUE 95s > all.equal(x$var1.var, x0$var) 95s [1] TRUE 95s > # test uk: 95s > x0 <- krige0(zinc~sqrt(dist), meuse, meuse.grid, v, computeVar = TRUE) 96s > rownames(x0$pred)=NULL 96s > names(x0$var)=NULL 96s > x <- krige(zinc~sqrt(dist), meuse, meuse.grid, v) 96s [using universal kriging] 96s > all.equal(x$var1.pred, x0$pred[,1]) 96s [1] TRUE 96s > all.equal(x$var1.var, x0$var) 96s [1] TRUE 96s > 96s BEGIN TEST line.R 96s 96s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 96s Copyright (C) 2024 The R Foundation for Statistical Computing 96s Platform: x86_64-pc-linux-gnu 96s 96s R is free software and comes with ABSOLUTELY NO WARRANTY. 96s You are welcome to redistribute it under certain conditions. 96s Type 'license()' or 'licence()' for distribution details. 96s 96s R is a collaborative project with many contributors. 96s Type 'contributors()' for more information and 96s 'citation()' on how to cite R or R packages in publications. 96s 96s Type 'demo()' for some demos, 'help()' for on-line help, or 96s 'help.start()' for an HTML browser interface to help. 96s Type 'q()' to quit R. 96s 96s > options(digits=5) 96s > library(sp) 96s > data(meuse.grid) 96s > gridded(meuse.grid) = ~x+y 96s > data(meuse) 96s > coordinates(meuse) = ~x+y 96s > 96s > # choose arbitrary line over the grid: 96s > image(meuse.grid["dist"],axes=T) 97s > pp = rbind(c(180000,331000),c(180000,332000),c(181000,333500)) 97s > Sl = SpatialLines(list(Lines(list(Line(pp)), "a"))) 97s > plot(Sl,add=T,col='green') 97s > 97s > # use the default spsample arguments of predict.gstat: 97s > pts=spsample(Sl,n=500,'regular',offset=c(.5,.5)) 97s > plot(pts, pch=3, cex=.2, add=T) 97s > 97s > library(gstat) 97s > v = vgm(.6, "Sph", 900, .06) 97s > out1 = krige(log(zinc)~1, meuse, Sl, v) 97s [using ordinary kriging] 97s > out1 97s An object of class "SpatialLinesDataFrame" 97s Slot "data": 97s x y var1.pred var1.var 97s a 180333 332167 6.1618 0.008025 97s 97s Slot "lines": 97s [[1]] 97s An object of class "Lines" 97s Slot "Lines": 97s [[1]] 97s An object of class "Line" 97s Slot "coords": 97s [,1] [,2] 97s [1,] 180000 331000 97s [2,] 180000 332000 97s [3,] 181000 333500 97s 97s 97s 97s Slot "ID": 97s [1] "a" 97s 97s 97s 97s Slot "bbox": 97s min max 97s x 180000 181000 97s y 331000 333500 97s 97s Slot "proj4string": 97s Coordinate Reference System: 97s Deprecated Proj.4 representation: NA 97s 97s > 97s > points(180333,332167,pch=3,cex=2) 97s > 97s > # use the same line as block discretization, and predict for (0,0) 97s > # (because the block discretizing points are not centered) 97s > out2 = krige(log(zinc)~1, meuse, SpatialPoints(matrix(0,1,2)), v, block=coordinates(pts)) 97s [using ordinary kriging] 97s > out2 97s coordinates var1.pred var1.var 97s 1 (0, 0) 6.1618 0.008025 97s > 97s > compare.krigingLines = function(formula, data, newdata, model) { 97s + out1 = krige(formula, data, newdata, model) 97s + pts = spsample(newdata, n=500, 'regular', offset=.5) 97s + out2 = krige(formula, data, SpatialPoints(matrix(0,1,2)), model, block = coordinates(pts)) 97s + print("difference:") 97s + as.data.frame(out1)[3:4]- as.data.frame(out2)[3:4] 97s + } 97s > 97s > compare.krigingLines(log(zinc)~1, meuse, Sl, v) 97s [using ordinary kriging] 97s [using ordinary kriging] 97s [1] "difference:" 97s var1.pred var1.var 97s a 0 0 97s > 97s > # one line, consisting of two line segments: 97s > pp2 = rbind(c(181000,333500),c(181000,332500)) 97s > Sl2 = SpatialLines(list(Lines(list(Line(pp),Line(pp2)), "a"))) 97s > krige(log(zinc)~1, meuse, Sl2, v) 97s [using ordinary kriging] 97s An object of class "SpatialLinesDataFrame" 97s Slot "data": 97s x y var1.pred var1.var 97s a 180667 332583 6.0424 0.0053191 97s 97s Slot "lines": 97s [[1]] 97s An object of class "Lines" 97s Slot "Lines": 97s [[1]] 97s An object of class "Line" 97s Slot "coords": 97s [,1] [,2] 97s [1,] 180000 331000 97s [2,] 180000 332000 97s [3,] 181000 333500 97s 97s 97s [[2]] 97s An object of class "Line" 97s Slot "coords": 97s [,1] [,2] 97s [1,] 181000 333500 97s [2,] 181000 332500 97s 97s 97s 97s Slot "ID": 97s [1] "a" 97s 97s 97s 97s Slot "bbox": 97s min max 97s x 180000 181000 97s y 331000 333500 97s 97s Slot "proj4string": 97s Coordinate Reference System: 97s Deprecated Proj.4 representation: NA 97s 97s > compare.krigingLines(log(zinc)~1, meuse, Sl2, v) 97s [using ordinary kriging] 97s [using ordinary kriging] 97s [1] "difference:" 97s var1.pred var1.var 97s a 0 0 97s > 97s > # two seperate line segments: 97s > Sl3 = SpatialLines(list(Lines(list(Line(pp)), "a"),Lines(list(Line(pp2)),"b"))) 97s > krige(log(zinc)~1, meuse, Sl3, v) 97s [using ordinary kriging] 97s An object of class "SpatialLinesDataFrame" 97s Slot "data": 97s x y var1.pred var1.var 97s a 180333 332167 6.1618 0.008025 97s b 181000 333000 5.7060 0.011043 97s 97s Slot "lines": 97s [[1]] 97s An object of class "Lines" 97s Slot "Lines": 97s [[1]] 97s An object of class "Line" 97s Slot "coords": 97s [,1] [,2] 97s [1,] 180000 331000 97s [2,] 180000 332000 97s [3,] 181000 333500 97s 97s 97s 97s Slot "ID": 97s [1] "a" 97s 97s 97s [[2]] 97s An object of class "Lines" 97s Slot "Lines": 97s [[1]] 97s An object of class "Line" 97s Slot "coords": 97s [,1] [,2] 97s [1,] 181000 333500 97s [2,] 181000 332500 97s 97s 97s 97s Slot "ID": 97s [1] "b" 97s 97s 97s 97s Slot "bbox": 97s min max 97s x 180000 181000 97s y 331000 333500 97s 97s Slot "proj4string": 97s Coordinate Reference System: 97s Deprecated Proj.4 representation: NA 97s 97s > 97s BEGIN TEST merge.R 97s 97s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 97s Copyright (C) 2024 The R Foundation for Statistical Computing 97s Platform: x86_64-pc-linux-gnu 97s 97s R is free software and comes with ABSOLUTELY NO WARRANTY. 97s You are welcome to redistribute it under certain conditions. 97s Type 'license()' or 'licence()' for distribution details. 97s 97s R is a collaborative project with many contributors. 97s Type 'contributors()' for more information and 97s 'citation()' on how to cite R or R packages in publications. 97s 97s Type 'demo()' for some demos, 'help()' for on-line help, or 97s 'help.start()' for an HTML browser interface to help. 97s Type 'q()' to quit R. 97s 97s > options(digits=6) 97s > # illustrates the use of merge, for merging parameters accross variables: 97s > # Z1=m+e1(s) 97s > # Z2=m+e2(s) 97s > # Z1 and Z2 each have a different variogram, but share the parameter m 97s > # see documentation of gstat() function 97s > library(gstat) 98s > d1 = data.frame(x=c(0,2),y=c(0,0),z=c(0,1)) 98s > d2 = data.frame(x=c(0,2),y=c(2,2),z=c(4,5)) 98s > g = gstat(NULL,"d1", z~1,~x+y,d1,model=vgm(1, "Exp", 1)) 98s > g = gstat(g,"d2", z~1,~x+y,d2,model=vgm(1, "Exp", 1), merge=c("d1","d2")) 98s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 98s > predict(g, data.frame(x=1,y=1), debug = 32) 98s Intrinsic Correlation found. Good. 98s [using ordinary cokriging] 98s we're at location X: 1 Y: 1 Z: 0 98s zero block size 98s we're at point X: 1 Y: 1 Z: 0 98s 98s # X: 98s #Matrix: 4 by 1 98s rbind( 98s c( 1.000000), # row 1 98s c( 1.000000), # row 2 98s c( 1.000000), # row 3 98s c( 1.000000) # row 4 98s ) 98s [using generalized covariances: max_val - semivariance()] 98s # Covariances (x_i, x_j) matrix C (upper triangle): 98s #Matrix: 4 by 4 98s rbind( 98s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 98s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 98s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 98s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 98s ) 98s 98s # glm->C, Choleski decomposed:: 98s #Matrix: 4 by 4 98s rbind( 98s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 98s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 98s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 98s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 98s ) 98s 98s # X'C-1 X: 98s #Matrix: 1 by 1 98s rbind( 98s c( 3.245289) # row 1 98s ) 98s 98s # beta: 98s #Vector: dim: 1 98s c( 2.500000) 98s # Cov(beta), (X'C-1 X)-1: 98s #Matrix: 1 by 1 98s rbind( 98s c( 0.308139) # row 1 98s ) 98s 98s # Corr(beta): 98s #Matrix: 1 by 1 98s rbind( 98s c( 1.000000) # row 1 98s ) 98s 98s # X0 (X values at prediction location x0): 98s #Matrix: 1 by 2 98s rbind( 98s c( 1.000000, 1.000000) # row 1 98s ) 98s 98s # BLUE(mu), E(y(x0)) = X0'beta: 98s #Vector: dim: 2 98s c( 2.500000, 2.500000) 98s # Covariances (x_i, x_0), C0: 98s #Matrix: 4 by 2 98s rbind( 98s c( 0.243117, 0.121558), # row 1 98s c( 0.243117, 0.121558), # row 2 98s c( 0.121558, 0.243117), # row 3 98s c( 0.121558, 0.243117) # row 4 98s ) 98s 98s # C-1 C0: 98s #Matrix: 4 by 2 98s rbind( 98s c( 0.206482, 0.089387), # row 1 98s c( 0.206482, 0.089387), # row 2 98s c( 0.089387, 0.206482), # row 3 98s c( 0.089387, 0.206482) # row 4 98s ) 98s 98s # [a] Cov_ij(B,B) or Cov_ij(0,0): 98s #Matrix: 2 by 2 98s rbind( 98s c( 1.000000, 0.500000), # row 1 98s c( 0.500000, 1.000000) # row 2 98s ) 98s 98s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 98s #Matrix: 2 by 2 98s rbind( 98s c( 0.051360, 0.051360), # row 1 98s c( 0.051360, 0.051360) # row 2 98s ) 98s 98s # [b] c0'C-1 c0: 98s #Matrix: 2 by 2 98s rbind( 98s c( 0.122130, 0.093662), # row 1 98s c( 0.093662, 0.122130) # row 2 98s ) 98s 98s # Best Linear Unbiased Predictor: 98s #Vector: dim: 2 98s c( 2.031619, 2.968381) 98s # MSPE ([a]-[b]+[c]): 98s #Matrix: 2 by 2 98s rbind( 98s c( 0.929230, 0.457698), # row 1 98s c( 0.457698, 0.929230) # row 2 98s ) 98s 98s # kriging weights: 98s #Matrix: 4 by 2 98s rbind( 98s c( 0.308548, 0.191452), # row 1 98s c( 0.308548, 0.191452), # row 2 98s c( 0.191452, 0.308548), # row 3 98s c( 0.191452, 0.308548) # row 4 98s ) 98s 98s 98s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 98s 1 1 1 2.03162 0.92923 2.96838 0.92923 0.457698 98s > 98s > # Z1 and Z2 share a regression slope: 98s > g = gstat(NULL,"d1", z~x,~x+y,d1,model=vgm(1, "Exp", 1)) 98s > g = gstat(g,"d2", z~x,~x+y,d2,model=vgm(1, "Exp", 1), 98s + merge=list(c("d1",2,"d2",2))) 98s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 98s > predict(g, data.frame(x=1,y=1), debug = 32) 98s Intrinsic Correlation found. Good. 98s [using universal cokriging] 98s we're at location X: 1 Y: 1 Z: 0 98s zero block size 98s we're at point X: 1 Y: 1 Z: 0 98s 98s # X: 98s #Matrix: 4 by 3 98s rbind( 98s c( 1.000000, 0.000000, 0.000000), # row 1 98s c( 1.000000, 2.000000, 0.000000), # row 2 98s c( 0.000000, 0.000000, 1.000000), # row 3 98s c( 0.000000, 2.000000, 1.000000) # row 4 98s ) 98s [using generalized covariances: max_val - semivariance()] 98s # Covariances (x_i, x_j) matrix C (upper triangle): 98s #Matrix: 4 by 4 98s rbind( 98s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 98s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 98s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 98s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 98s ) 98s 98s # glm->C, Choleski decomposed:: 98s #Matrix: 4 by 4 98s rbind( 98s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 98s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 98s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 98s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 98s ) 98s 98s # X'C-1 X: 98s #Matrix: 3 by 3 98s rbind( 98s c( 1.774607, 1.622645, -0.151962), # row 1 98s c( 1.622645, 7.676050, 1.622645), # row 2 98s c(-0.151962, 1.622645, 1.774607) # row 3 98s ) 98s 98s # beta: 98s #Vector: dim: 3 98s c( 0.000000, 0.500000, 4.000000) 98s # Cov(beta), (X'C-1 X)-1: 98s #Matrix: 3 by 3 98s rbind( 98s c( 0.793363, -0.225695, 0.274305), # row 1 98s c(-0.225695, 0.225695, -0.225695), # row 2 98s c( 0.274305, -0.225695, 0.793363) # row 3 98s ) 98s 98s # Corr(beta): 98s #Matrix: 3 by 3 98s rbind( 98s c( 1.000000, -0.533366, 0.345750), # row 1 98s c(-0.533366, 1.000000, -0.533366), # row 2 98s c( 0.345750, -0.533366, 1.000000) # row 3 98s ) 98s 98s # X0 (X values at prediction location x0): 98s #Matrix: 3 by 2 98s rbind( 98s c( 1.000000, 0.000000), # row 1 98s c( 1.000000, 1.000000), # row 2 98s c( 0.000000, 1.000000) # row 3 98s ) 98s 98s # BLUE(mu), E(y(x0)) = X0'beta: 98s #Vector: dim: 2 98s c( 0.500000, 4.500000) 98s # Covariances (x_i, x_0), C0: 98s #Matrix: 4 by 2 98s rbind( 98s c( 0.243117, 0.121558), # row 1 98s c( 0.243117, 0.121558), # row 2 98s c( 0.121558, 0.243117), # row 3 98s c( 0.121558, 0.243117) # row 4 98s ) 98s 98s # C-1 C0: 98s #Matrix: 4 by 2 98s rbind( 98s c( 0.206482, 0.089387), # row 1 98s c( 0.206482, 0.089387), # row 2 98s c( 0.089387, 0.206482), # row 3 98s c( 0.089387, 0.206482) # row 4 98s ) 98s 98s # [a] Cov_ij(B,B) or Cov_ij(0,0): 98s #Matrix: 2 by 2 98s rbind( 98s c( 1.000000, 0.500000), # row 1 98s c( 0.500000, 1.000000) # row 2 98s ) 98s 98s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 98s #Matrix: 2 by 2 98s rbind( 98s c( 0.203564, -0.100844), # row 1 98s c(-0.100844, 0.203564) # row 2 98s ) 98s 98s # [b] c0'C-1 c0: 98s #Matrix: 2 by 2 98s rbind( 98s c( 0.122130, 0.093662), # row 1 98s c( 0.093662, 0.122130) # row 2 98s ) 98s 98s # Best Linear Unbiased Predictor: 98s #Vector: dim: 2 98s c( 0.500000, 4.500000) 98s # MSPE ([a]-[b]+[c]): 98s #Matrix: 2 by 2 98s rbind( 98s c( 1.081434, 0.305494), # row 1 98s c( 0.305494, 1.081434) # row 2 98s ) 98s 98s # kriging weights: 98s #Matrix: 4 by 2 98s rbind( 98s c( 0.500000, 0.000000), # row 1 98s c( 0.500000, 0.000000), # row 2 98s c( 0.000000, 0.500000), # row 3 98s c( 0.000000, 0.500000) # row 4 98s ) 98s 98s 98s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 98s 1 1 1 0.5 1.08143 4.5 1.08143 0.305494 98s > 98s BEGIN TEST na.action.R 98s 98s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 98s Copyright (C) 2024 The R Foundation for Statistical Computing 98s Platform: x86_64-pc-linux-gnu 98s 98s R is free software and comes with ABSOLUTELY NO WARRANTY. 98s You are welcome to redistribute it under certain conditions. 98s Type 'license()' or 'licence()' for distribution details. 98s 98s R is a collaborative project with many contributors. 98s Type 'contributors()' for more information and 98s 'citation()' on how to cite R or R packages in publications. 98s 98s Type 'demo()' for some demos, 'help()' for on-line help, or 98s 'help.start()' for an HTML browser interface to help. 98s Type 'q()' to quit R. 98s 98s > library(sp) 98s > 98s > data(meuse) 98s > data(meuse.grid) 98s > 98s > set.seed(13131) # reproduce results 98s > 98s > # select 10 random rows; 98s > # create two missing values in the coordinates: 98s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 98s > m[c(2,8), "x"] = NA 98s > 98s > library(gstat) 99s > ## this is not allowed anymore: 99s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.pass)) 99s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.omit)) 99s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 99s missing values in object 99s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.exclude)) 99s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 99s missing values in object 99s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.fail)) 99s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 99s missing values in object 99s > 99s > # select 10 random rows; 99s > # create two missing values in the regressor variable: 99s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 99s > m[c(3,7), "dist"] = NA 99s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.pass) 99s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 99s missing values in object 99s [ordinary or weighted least squares prediction] 99s x y var1.pred var1.var 99s 1 178860 330860 6.530134 0.2415196 99s 2 180260 331860 5.389567 0.2406041 99s 3 180100 331860 NA NA 99s 4 180460 331820 5.213370 0.2417197 99s 5 179660 330580 5.550859 0.2398778 99s 6 179740 330300 6.108648 0.2395392 99s 7 180220 330660 NA NA 99s 8 178580 329820 6.533801 0.2415453 99s 9 180100 331900 5.580264 0.2397758 99s 10 180780 331900 5.095967 0.2426499 99s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.omit) 99s [ordinary or weighted least squares prediction] 99s x y var1.pred var1.var 99s 1877 178860 330860 6.530134 0.2415196 99s 1015 180260 331860 5.389567 0.2406041 99s 1056 180460 331820 5.213370 0.2417197 99s 2199 179660 330580 5.550859 0.2398778 99s 2556 179740 330300 6.108648 0.2395392 99s 2985 178580 329820 6.533801 0.2415453 99s 975 180100 331900 5.580264 0.2397758 99s 992 180780 331900 5.095967 0.2426499 99s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.exclude) 99s [ordinary or weighted least squares prediction] 99s x y var1.pred var1.var 99s 1877 178860 330860 6.530134 0.2415196 99s 1015 180260 331860 5.389567 0.2406041 99s 1056 180460 331820 5.213370 0.2417197 99s 2199 179660 330580 5.550859 0.2398778 99s 2556 179740 330300 6.108648 0.2395392 99s 2985 178580 329820 6.533801 0.2415453 99s 975 180100 331900 5.580264 0.2397758 99s 992 180780 331900 5.095967 0.2426499 99s > try(krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.fail)) 99s > 99s Error in na.fail.default(structure(list(dist = c(0.00135803, 0.423804, : 99s missing values in object 99s BEGIN TEST rings.R 99s 99s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 99s Copyright (C) 2024 The R Foundation for Statistical Computing 99s Platform: x86_64-pc-linux-gnu 99s 99s R is free software and comes with ABSOLUTELY NO WARRANTY. 99s You are welcome to redistribute it under certain conditions. 99s Type 'license()' or 'licence()' for distribution details. 99s 99s R is a collaborative project with many contributors. 99s Type 'contributors()' for more information and 99s 'citation()' on how to cite R or R packages in publications. 99s 99s Type 'demo()' for some demos, 'help()' for on-line help, or 99s 'help.start()' for an HTML browser interface to help. 99s Type 'q()' to quit R. 99s 99s > library(sp) 100s > library(gstat) 100s > set.seed(13331) 100s > 100s > x = runif(10) 100s > y = runif(10) 100s > z = rnorm(10) 100s > d = data.frame(x=x,y=y,z=z) 100s > bl = c(1,1) 100s > 100s > nd = data.frame(x=.5, y=.5) 100s > 100s > # single block: 100s > library(sp) 100s > coordinates(d) = ~x+y 100s > nd = SpatialPoints(nd) 100s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 100s + set = list(nb=4)) 100s [using ordinary kriging] 100s > 100s > ring = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 100s > r1 = SpatialPolygons(list(Polygons(list(Polygon(ring)), ID = "xx"))) 100s > a = data.frame(a = 1, b = 2) 100s > rownames(a) = "xx" 100s > r1df = SpatialPolygonsDataFrame(r1, a) 100s > 100s > g = gstat(formula=z~1, data=d, model=vgm(1, "Exp", 1)) 100s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 100s > yy = predict(g, r1df, block = bl, sps.args = args) 100s [using ordinary kriging] 100s > 100s > xx = as.data.frame(xx) 100s > yy = as.data.frame(yy) 100s > row.names(xx) = row.names(yy) 100s > print(all.equal(xx,yy)) 100s [1] TRUE 100s > 100s > ## multiple blocks of equal size: 100s > nd = data.frame(x= 0:4 + .5, y=rep(.5,5)) 100s > nd = SpatialPoints(nd) 100s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 100s + set = list(nb=4)) 100s [using ordinary kriging] 101s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 101s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 101s > ring2 = cbind(c(2+0,2+bl[1],2+bl[1],2+0,2+0), c(0,0,bl[2],bl[2],0)) 101s > ring3 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 101s > ring4 = cbind(c(4+0,4+bl[1],4+bl[1],4+0,4+0), c(0,0,bl[2],bl[2],0)) 101s > r1 = SpatialPolygons(list( 101s + Polygons(list(Polygon(ring0)), ID = "x0"), 101s + Polygons(list(Polygon(ring1)), ID = "x1"), 101s + Polygons(list(Polygon(ring2)), ID = "x2"), 101s + Polygons(list(Polygon(ring3)), ID = "x3"), 101s + Polygons(list(Polygon(ring4)), ID = "x4") 101s + )) 101s > df = data.frame(a=rep(1,5), b= rep(1,5)) 101s > rownames(df) = c("x0", "x1", "x2", "x3", "x4") 101s > r1df = SpatialPolygonsDataFrame(r1, df) 101s > 101s > yy = predict(g, r1, block = bl, sps.args = args) 101s [using ordinary kriging] 101s > xx = as.data.frame(xx) 101s > yy = as.data.frame(yy) 101s > row.names(xx) = row.names(yy) 101s > all.equal(xx, yy) 101s [1] TRUE 101s > 101s > ## multiple blocks of equal size: 101s > args = list(type = "regular", cellsize=.25, offset=c(0.5,0.5), n=16) 101s > yy = predict(g, r1, block = bl, sps.args = args) 101s [using ordinary kriging] 101s > xx = as.data.frame(xx) 101s > yy = as.data.frame(yy) 101s > row.names(xx) = row.names(yy) 101s > print(all.equal(xx, yy)) 101s [1] TRUE 101s > 101s > ## multiple blocks of varying size: 101s > nd = data.frame(x=c(0.5, 2, 4.5), y=c(0.5, 1, 1.5)) 101s > nd = SpatialPoints(nd) 101s > bl = c(1,1) 101s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 101s > xx1 = krige(z~1, d, nd[1], model=vgm(1, "Exp", 1), block = bl, 101s + set = list(nb=4)) 101s [using ordinary kriging] 101s > bl = c(2,2) 101s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 101s > xx2 = krige(z~1, d, nd[2], model=vgm(1, "Exp", 1), block = bl, 101s + set = list(nb=4)) 101s [using ordinary kriging] 101s > bl = c(3,3) 101s > ring2 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 101s > xx3 = krige(z~1, d, nd[3], model=vgm(1, "Exp", 1), block = bl, 101s + set = list(nb=4)) 101s [using ordinary kriging] 101s > r1 = SpatialPolygons(list( 101s + Polygons(list(Polygon(ring0)), ID = "x0"), 101s + Polygons(list(Polygon(ring1)), ID = "x1"), 101s + Polygons(list(Polygon(ring2)), ID = "x2") 101s + )) 101s > df = data.frame(a = rep(1,3), b = rep(1,3)) 101s > rownames(df) = c("x0", "x1", "x2") 101s > r1df = SpatialPolygonsDataFrame(r1, df) 101s > 101s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 101s > yy = predict(g, r1df, block = bl, sps.args = args) 101s [using ordinary kriging] 101s > xx = rbind(as.data.frame(xx1), as.data.frame(xx2), as.data.frame(xx3)) 101s > row.names(xx) = 1:3 101s > xx = as.data.frame(xx) 101s > yy = as.data.frame(yy) 101s > row.names(xx) = row.names(yy) 101s > print(all.equal(xx, yy)) 101s [1] TRUE 101s > 101s BEGIN TEST sim.R 101s 101s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 101s Copyright (C) 2024 The R Foundation for Statistical Computing 101s Platform: x86_64-pc-linux-gnu 101s 101s R is free software and comes with ABSOLUTELY NO WARRANTY. 101s You are welcome to redistribute it under certain conditions. 101s Type 'license()' or 'licence()' for distribution details. 101s 101s R is a collaborative project with many contributors. 101s Type 'contributors()' for more information and 101s 'citation()' on how to cite R or R packages in publications. 101s 101s Type 'demo()' for some demos, 'help()' for on-line help, or 101s 'help.start()' for an HTML browser interface to help. 101s Type 'q()' to quit R. 101s 101s > options(digits=6) 101s > library(sp) 101s > data(meuse) 101s > set.seed(158229572) 101s > new.locs <- data.frame(x = c(181170, 180310, 180205, 178673, 178770, 178270), 101s + y = c(333250, 332189, 331707, 330066, 330675, 331075)) 101s > library(gstat) 101s > krige(zinc ~ 1, ~ x + y, meuse, newdata = new.locs, 101s + model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 101s + block = c(40,40), nmax = 40, nsim = 10) 102s drawing 10 GLS realisations of beta... 102s [using conditional Gaussian simulation] 102s x y sim1 sim2 sim3 sim4 sim5 sim6 sim7 102s 1 181170 333250 267.385 27.5686 428.144 381.576 151.119 175.890 293.273 102s 2 180310 332189 429.437 659.6579 564.023 611.666 612.756 619.791 771.961 102s 3 180205 331707 205.978 412.7276 271.827 380.349 169.488 369.822 266.026 102s 4 178673 330066 117.479 684.0663 399.148 585.096 606.396 867.866 807.634 102s 5 178770 330675 780.072 837.4628 682.690 911.052 600.984 783.019 749.476 102s 6 178270 331075 1025.778 1582.0269 614.235 332.377 660.228 589.447 972.018 102s sim8 sim9 sim10 102s 1 294.107 113.347 279.991 102s 2 776.498 724.160 901.692 102s 3 338.021 630.244 140.272 102s 4 127.301 957.242 444.007 102s 5 533.773 748.144 623.960 102s 6 1084.170 537.604 -214.972 102s > 102s BEGIN TEST stars.R 102s 102s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 102s Copyright (C) 2024 The R Foundation for Statistical Computing 102s Platform: x86_64-pc-linux-gnu 102s 102s R is free software and comes with ABSOLUTELY NO WARRANTY. 102s You are welcome to redistribute it under certain conditions. 102s Type 'license()' or 'licence()' for distribution details. 102s 102s R is a collaborative project with many contributors. 102s Type 'contributors()' for more information and 102s 'citation()' on how to cite R or R packages in publications. 102s 102s Type 'demo()' for some demos, 'help()' for on-line help, or 102s 'help.start()' for an HTML browser interface to help. 102s Type 'q()' to quit R. 102s 102s > Sys.setenv(TZ = "UTC") 102s > 102s > # 0. using sp: 102s > 102s > suppressPackageStartupMessages(library(sp)) 102s > demo(meuse, ask = FALSE) 102s 102s 102s demo(meuse) 102s ---- ~~~~~ 102s 102s > require(sp) 102s 102s > crs = CRS("EPSG:28992") 103s 103s > data("meuse") 103s 103s > coordinates(meuse) <- ~x+y 103s 103s > proj4string(meuse) <- crs 103s 103s > data("meuse.grid") 103s 103s > coordinates(meuse.grid) <- ~x+y 103s 103s > gridded(meuse.grid) <- TRUE 103s 103s > proj4string(meuse.grid) <- crs 103s 103s > data("meuse.riv") 103s 103s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 103s 103s > proj4string(meuse.riv) <- crs 103s 103s > data("meuse.area") 103s 103s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 103s 103s > proj4string(meuse.area) <- crs 103s > suppressPackageStartupMessages(library(gstat)) 103s > v = variogram(log(zinc)~1, meuse) 103s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 103s model psill range 103s 1 Nug 0.05066243 0.0000 103s 2 Sph 0.59060780 897.0209 103s > k_sp = krige(log(zinc)~1, meuse[-(1:5),], meuse[1:5,], v.fit) 103s [using ordinary kriging] 103s > k_sp_grd = krige(log(zinc)~1, meuse, meuse.grid, v.fit) 103s [using ordinary kriging] 103s > 103s > # 1. using sf: 103s > suppressPackageStartupMessages(library(sf)) 103s > demo(meuse_sf, ask = FALSE, echo = FALSE) 103s > # reloads meuse as data.frame, so 103s > demo(meuse, ask = FALSE) 103s 103s 103s demo(meuse) 103s ---- ~~~~~ 103s 103s > require(sp) 103s 103s > crs = CRS("EPSG:28992") 103s 103s > data("meuse") 103s 103s > coordinates(meuse) <- ~x+y 103s 103s > proj4string(meuse) <- crs 103s 103s > data("meuse.grid") 103s 103s > coordinates(meuse.grid) <- ~x+y 103s 103s > gridded(meuse.grid) <- TRUE 103s 103s > proj4string(meuse.grid) <- crs 103s 103s > data("meuse.riv") 103s 103s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 103s 103s > proj4string(meuse.riv) <- crs 103s 103s > data("meuse.area") 103s 103s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 103s 103s > proj4string(meuse.area) <- crs 103s > 103s > v = variogram(log(zinc)~1, meuse_sf) 103s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 103s model psill range 103s 1 Nug 0.05066243 0.0000 103s 2 Sph 0.59060780 897.0209 103s > k_sf = krige(log(zinc)~1, meuse_sf[-(1:5),], meuse_sf[1:5,], v.fit) 103s [using ordinary kriging] 103s > 103s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = FALSE) 103s [1] TRUE 103s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = TRUE) 103s [1] "Attributes: < Component “bbox”: Attributes: < Component “dimnames”: Component 1: 2 string mismatches > >" 103s [2] "Attributes: < Component “coords”: Attributes: < Component “dimnames”: Component 2: 2 string mismatches > >" 103s [3] "Attributes: < Component “coords.nrs”: Numeric: lengths (2, 0) differ >" 103s > 103s > # 2. using stars for grid: 103s > 103s > suppressPackageStartupMessages(library(stars)) 103s > st = st_as_stars(meuse.grid) 103s > st_crs(st) 103s Coordinate Reference System: 103s User input: Amersfoort / RD New 103s wkt: 103s PROJCRS["Amersfoort / RD New", 103s BASEGEOGCRS["Amersfoort", 103s DATUM["Amersfoort", 103s ELLIPSOID["Bessel 1841",6377397.155,299.1528128, 103s LENGTHUNIT["metre",1]]], 103s PRIMEM["Greenwich",0, 103s ANGLEUNIT["degree",0.0174532925199433]], 103s ID["EPSG",4289]], 103s CONVERSION["RD New", 103s METHOD["Oblique Stereographic", 103s ID["EPSG",9809]], 103s PARAMETER["Latitude of natural origin",52.1561605555556, 103s ANGLEUNIT["degree",0.0174532925199433], 103s ID["EPSG",8801]], 103s PARAMETER["Longitude of natural origin",5.38763888888889, 103s ANGLEUNIT["degree",0.0174532925199433], 103s ID["EPSG",8802]], 103s PARAMETER["Scale factor at natural origin",0.9999079, 103s SCALEUNIT["unity",1], 103s ID["EPSG",8805]], 103s PARAMETER["False easting",155000, 103s LENGTHUNIT["metre",1], 103s ID["EPSG",8806]], 103s PARAMETER["False northing",463000, 103s LENGTHUNIT["metre",1], 103s ID["EPSG",8807]]], 103s CS[Cartesian,2], 103s AXIS["easting (X)",east, 103s ORDER[1], 103s LENGTHUNIT["metre",1]], 103s AXIS["northing (Y)",north, 103s ORDER[2], 103s LENGTHUNIT["metre",1]], 103s USAGE[ 103s SCOPE["Engineering survey, topographic mapping."], 103s AREA["Netherlands - onshore, including Waddenzee, Dutch Wadden Islands and 12-mile offshore coastal zone."], 103s BBOX[50.75,3.2,53.7,7.22]], 103s ID["EPSG",28992]] 103s > 103s > # compare inputs: 103s > sp = as(st, "Spatial") 104s > fullgrid(meuse.grid) = TRUE 104s > all.equal(sp, meuse.grid["dist"], check.attributes = FALSE) 104s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 104s [2] "Names: 1 string mismatch" 104s > all.equal(sp, meuse.grid["dist"], check.attributes = TRUE, use.names = FALSE) 104s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 104s [2] "Names: 1 string mismatch" 104s [3] "Attributes: < Component 3: Names: 1 string mismatch >" 104s [4] "Attributes: < Component 3: Length mismatch: comparison on first 1 components >" 104s [5] "Attributes: < Component 3: Component 1: Mean relative difference: 1.08298 >" 104s [6] "Attributes: < Component 4: Attributes: < Component 2: names for current but not for target > >" 104s [7] "Attributes: < Component 4: Attributes: < Component 3: names for current but not for target > >" 104s > 104s > # kriging: 104s > st_crs(st) = st_crs(meuse_sf) = NA # GDAL roundtrip messes them up! 104s > k_st = if (Sys.getenv("USER") == "travis") { 104s + try(krige(log(zinc)~1, meuse_sf, st, v.fit)) 104s + } else { 104s + krige(log(zinc)~1, meuse_sf, st, v.fit) 104s + } 104s [using ordinary kriging] 104s > k_st 104s stars object with 2 dimensions and 2 attributes 104s attribute(s): 104s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 104s var1.pred 4.7765547 5.2376293 5.5728839 5.7072287 6.1717619 7.4399911 5009 104s var1.var 0.0854949 0.1372864 0.1621838 0.1853319 0.2116152 0.5002756 5009 104s dimension(s): 104s from to offset delta x/y 104s x 1 78 178440 40 [x] 104s y 1 104 333760 -40 [y] 104s > 104s > # handle factors, when going to stars? 104s > k_sp_grd$cls = cut(k_sp_grd$var1.pred, c(0, 5, 6, 7, 8, 9)) 104s > st_as_stars(k_sp_grd) 104s stars object with 2 dimensions and 3 attributes 104s attribute(s): 104s var1.pred var1.var cls 104s Min. :4.777 Min. :0.085 (0,5]: 316 104s 1st Qu.:5.238 1st Qu.:0.137 (5,6]:1778 104s Median :5.573 Median :0.162 (6,7]: 962 104s Mean :5.707 Mean :0.185 (7,8]: 47 104s 3rd Qu.:6.172 3rd Qu.:0.212 (8,9]: 0 104s Max. :7.440 Max. :0.500 NA's :5009 104s NA's :5009 NA's :5009 104s dimension(s): 104s from to offset delta refsys x/y 104s x 1 78 178440 40 Amersfoort / RD New [x] 104s y 1 104 333760 -40 Amersfoort / RD New [y] 104s > if (require(raster, quietly = TRUE)) { 104s + print(st_as_stars(raster::stack(k_sp_grd))) # check 104s + print(all.equal(st_redimension(st_as_stars(k_sp_grd)), st_as_stars(raster::stack(k_sp_grd)), check.attributes=FALSE)) 104s + } 108s stars object with 3 dimensions and 1 attribute 108s attribute(s): 108s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 108s var1.pred 0.0854949 0.2116778 2 2.710347 5.237542 7.439991 15027 108s dimension(s): 108s from to offset delta refsys values 108s x 1 78 178440 40 Amersfoort / RD New NULL 108s y 1 104 333760 -40 Amersfoort / RD New NULL 108s band 1 3 NA NA NA var1.pred, var1.var , cls 108s x/y 108s x [x] 108s y [y] 108s band 108s [1] TRUE 108s > 108s > suppressPackageStartupMessages(library(spacetime)) 108s > 108s > Sys.setenv(TZ="") 108s > tm = as.POSIXct("2019-02-25 15:37:24 CET") 108s > n = 4 108s > s = stars:::st_stars(list(foo = array(1:(n^3), rep(n,3))), 108s + stars:::create_dimensions(list( 108s + x = stars:::create_dimension(from = 1, to = n, offset = 10, delta = 0.5), 108s + y = stars:::create_dimension(from = 1, to = n, offset = 0, delta = -0.7), 108s + time = stars:::create_dimension(values = tm + 1:n)), 108s + raster = stars:::get_raster(dimensions = c("x", "y"))) 108s + ) 108s > s 108s stars object with 3 dimensions and 1 attribute 108s attribute(s): 108s Min. 1st Qu. Median Mean 3rd Qu. Max. 108s foo 1 16.75 32.5 32.5 48.25 64 108s dimension(s): 108s from to offset delta refsys x/y 108s x 1 4 10 0.5 NA [x] 108s y 1 4 0 -0.7 NA [y] 108s time 1 4 2019-02-25 15:37:25 Universal 1 secs POSIXct 108s > 108s > as.data.frame(s) 108s x y time foo 108s 1 10.25 -0.35 2019-02-25 15:37:25 1 108s 2 10.75 -0.35 2019-02-25 15:37:25 2 108s 3 11.25 -0.35 2019-02-25 15:37:25 3 108s 4 11.75 -0.35 2019-02-25 15:37:25 4 108s 5 10.25 -1.05 2019-02-25 15:37:25 5 108s 6 10.75 -1.05 2019-02-25 15:37:25 6 108s 7 11.25 -1.05 2019-02-25 15:37:25 7 108s 8 11.75 -1.05 2019-02-25 15:37:25 8 108s 9 10.25 -1.75 2019-02-25 15:37:25 9 108s 10 10.75 -1.75 2019-02-25 15:37:25 10 108s 11 11.25 -1.75 2019-02-25 15:37:25 11 108s 12 11.75 -1.75 2019-02-25 15:37:25 12 108s 13 10.25 -2.45 2019-02-25 15:37:25 13 108s 14 10.75 -2.45 2019-02-25 15:37:25 14 108s 15 11.25 -2.45 2019-02-25 15:37:25 15 108s 16 11.75 -2.45 2019-02-25 15:37:25 16 108s 17 10.25 -0.35 2019-02-25 15:37:26 17 108s 18 10.75 -0.35 2019-02-25 15:37:26 18 108s 19 11.25 -0.35 2019-02-25 15:37:26 19 108s 20 11.75 -0.35 2019-02-25 15:37:26 20 108s 21 10.25 -1.05 2019-02-25 15:37:26 21 108s 22 10.75 -1.05 2019-02-25 15:37:26 22 108s 23 11.25 -1.05 2019-02-25 15:37:26 23 108s 24 11.75 -1.05 2019-02-25 15:37:26 24 108s 25 10.25 -1.75 2019-02-25 15:37:26 25 108s 26 10.75 -1.75 2019-02-25 15:37:26 26 108s 27 11.25 -1.75 2019-02-25 15:37:26 27 108s 28 11.75 -1.75 2019-02-25 15:37:26 28 108s 29 10.25 -2.45 2019-02-25 15:37:26 29 108s 30 10.75 -2.45 2019-02-25 15:37:26 30 108s 31 11.25 -2.45 2019-02-25 15:37:26 31 108s 32 11.75 -2.45 2019-02-25 15:37:26 32 108s 33 10.25 -0.35 2019-02-25 15:37:27 33 108s 34 10.75 -0.35 2019-02-25 15:37:27 34 108s 35 11.25 -0.35 2019-02-25 15:37:27 35 108s 36 11.75 -0.35 2019-02-25 15:37:27 36 108s 37 10.25 -1.05 2019-02-25 15:37:27 37 108s 38 10.75 -1.05 2019-02-25 15:37:27 38 108s 39 11.25 -1.05 2019-02-25 15:37:27 39 108s 40 11.75 -1.05 2019-02-25 15:37:27 40 108s 41 10.25 -1.75 2019-02-25 15:37:27 41 108s 42 10.75 -1.75 2019-02-25 15:37:27 42 108s 43 11.25 -1.75 2019-02-25 15:37:27 43 108s 44 11.75 -1.75 2019-02-25 15:37:27 44 108s 45 10.25 -2.45 2019-02-25 15:37:27 45 108s 46 10.75 -2.45 2019-02-25 15:37:27 46 108s 47 11.25 -2.45 2019-02-25 15:37:27 47 108s 48 11.75 -2.45 2019-02-25 15:37:27 48 108s 49 10.25 -0.35 2019-02-25 15:37:28 49 108s 50 10.75 -0.35 2019-02-25 15:37:28 50 108s 51 11.25 -0.35 2019-02-25 15:37:28 51 108s 52 11.75 -0.35 2019-02-25 15:37:28 52 108s 53 10.25 -1.05 2019-02-25 15:37:28 53 108s 54 10.75 -1.05 2019-02-25 15:37:28 54 108s 55 11.25 -1.05 2019-02-25 15:37:28 55 108s 56 11.75 -1.05 2019-02-25 15:37:28 56 108s 57 10.25 -1.75 2019-02-25 15:37:28 57 108s 58 10.75 -1.75 2019-02-25 15:37:28 58 108s 59 11.25 -1.75 2019-02-25 15:37:28 59 108s 60 11.75 -1.75 2019-02-25 15:37:28 60 108s 61 10.25 -2.45 2019-02-25 15:37:28 61 108s 62 10.75 -2.45 2019-02-25 15:37:28 62 108s 63 11.25 -2.45 2019-02-25 15:37:28 63 108s 64 11.75 -2.45 2019-02-25 15:37:28 64 108s > plot(s, col = sf.colors(), axes = TRUE) 108s > (s.stfdf = as(s, "STFDF")) 108s An object of class "STFDF" 108s Slot "data": 108s foo 108s 1 1 108s 2 2 108s 3 3 108s 4 4 108s 5 5 108s 6 6 108s 7 7 108s 8 8 108s 9 9 108s 10 10 108s 11 11 108s 12 12 108s 13 13 108s 14 14 108s 15 15 108s 16 16 108s 17 17 108s 18 18 108s 19 19 108s 20 20 108s 21 21 108s 22 22 108s 23 23 108s 24 24 108s 25 25 108s 26 26 108s 27 27 108s 28 28 108s 29 29 108s 30 30 108s 31 31 108s 32 32 108s 33 33 108s 34 34 108s 35 35 108s 36 36 108s 37 37 108s 38 38 108s 39 39 108s 40 40 108s 41 41 108s 42 42 108s 43 43 108s 44 44 108s 45 45 108s 46 46 108s 47 47 108s 48 48 108s 49 49 108s 50 50 108s 51 51 108s 52 52 108s 53 53 108s 54 54 108s 55 55 108s 56 56 108s 57 57 108s 58 58 108s 59 59 108s 60 60 108s 61 61 108s 62 62 108s 63 63 108s 64 64 108s 108s Slot "sp": 108s Object of class SpatialPixels 108s Grid topology: 108s cellcentre.offset cellsize cells.dim 108s x 10.25 0.5 4 108s y -2.45 0.7 4 108s SpatialPoints: 108s x y 108s [1,] 10.25 -0.35 108s [2,] 10.75 -0.35 108s [3,] 11.25 -0.35 108s [4,] 11.75 -0.35 108s [5,] 10.25 -1.05 108s [6,] 10.75 -1.05 108s [7,] 11.25 -1.05 108s [8,] 11.75 -1.05 108s [9,] 10.25 -1.75 108s [10,] 10.75 -1.75 108s [11,] 11.25 -1.75 108s [12,] 11.75 -1.75 108s [13,] 10.25 -2.45 108s [14,] 10.75 -2.45 108s [15,] 11.25 -2.45 108s [16,] 11.75 -2.45 108s Coordinate Reference System (CRS) arguments: NA 108s 108s Slot "time": 108s timeIndex 108s 2019-02-25 15:37:25 1 108s 2019-02-25 15:37:26 2 108s 2019-02-25 15:37:27 3 108s 2019-02-25 15:37:28 4 108s 108s Slot "endTime": 108s [1] "2019-02-25 15:37:26 Universal" "2019-02-25 15:37:27 Universal" 108s [3] "2019-02-25 15:37:28 Universal" "2019-02-25 15:37:29 Universal" 108s 108s > stplot(s.stfdf, scales = list(draw = TRUE)) 108s > 108s > (s2 = st_as_stars(s.stfdf)) 108s stars object with 3 dimensions and 1 attribute 108s attribute(s): 108s Min. 1st Qu. Median Mean 3rd Qu. Max. 108s foo 1 16.75 32.5 32.5 48.25 64 108s dimension(s): 108s from to offset delta refsys x/y 108s x 1 4 10 0.5 NA [x] 108s y 1 4 -1.11e-16 -0.7 NA [y] 108s time 1 4 2019-02-25 15:37:25 Universal 1 secs POSIXct 108s > plot(s2, col = sf.colors(), axes = TRUE) 108s > all.equal(s, s2, check.attributes = FALSE) 108s [1] TRUE 108s > 108s > # multiple simulations: 108s > data(meuse, package = "sp") 108s > data(meuse.grid, package = "sp") 108s > coordinates(meuse.grid) <- ~x+y 108s > gridded(meuse.grid) <- TRUE 108s > meuse.grid = st_as_stars(meuse.grid) 108s > meuse_sf = st_as_sf(meuse, coords = c("x", "y")) 108s > g = gstat(NULL, "zinc", zinc~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10) 108s > g = gstat(g, "lead", lead~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10, fill.cross = TRUE) 108s > set.seed(123) 108s > (p = predict(g, meuse.grid, nsim = 5)) 108s drawing 5 multivariate GLS realisations of beta... 108s [using conditional Gaussian simulation] 109s stars object with 3 dimensions and 2 attributes 109s attribute(s): 109s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 109s zinc 101.7643 199.59256 300.2140 399.8017 544.0327 1817.2057 25045 109s lead 32.7799 73.03151 107.9339 133.1725 178.8162 638.9396 25045 109s dimension(s): 109s from to offset delta values x/y 109s x 1 78 178440 40 NULL [x] 109s y 1 104 333760 -40 NULL [y] 109s sample 1 5 NA NA sim1,...,sim5 109s > 109s BEGIN TEST unproj.R 109s 109s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 109s Copyright (C) 2024 The R Foundation for Statistical Computing 109s Platform: x86_64-pc-linux-gnu 109s 109s R is free software and comes with ABSOLUTELY NO WARRANTY. 109s You are welcome to redistribute it under certain conditions. 109s Type 'license()' or 'licence()' for distribution details. 109s 109s R is a collaborative project with many contributors. 109s Type 'contributors()' for more information and 109s 'citation()' on how to cite R or R packages in publications. 109s 109s Type 'demo()' for some demos, 'help()' for on-line help, or 109s 'help.start()' for an HTML browser interface to help. 109s Type 'q()' to quit R. 109s 109s > # DOI 10.1007/s11004-011-9344-7 109s > # http://mypage.iu.edu/~srobeson/Pubs/variogram_sphere_mathgeo_2011.pdf 109s > 109s > suppressPackageStartupMessages(library(sp)) 109s > library(gstat) 109s > 109s > if (require(sp, quietly = TRUE) && require(fields, quietly = TRUE) && require(sf, quietly = TRUE)) { 109s + data(meuse) 109s + coordinates(meuse) = ~x+y 109s + proj4string(meuse) = CRS("+init=epsg:28992") 109s + ll = "+proj=longlat +ellps=WGS84" 109s + # meuse.ll = spTransform(meuse, CRS("+proj=longlat +ellps=WGS84")) 109s + meuse.ll = as(st_transform(sf::st_as_sf(meuse), sf::st_crs(ll)), "Spatial") 109s + meuse.ll[1:10,] 109s + variogram(log(zinc)~1, meuse.ll) 109s + 109s + cloud1 = variogram(log(zinc)~1, meuse, cloud=T, cutoff=6000) 109s + cloud2 = variogram(log(zinc)~1, meuse.ll, cloud=T, cutoff=6) 109s + 109s + plot(cloud1$dist/1000, cloud2$dist, xlab="Amersfoort, km", ylab = "Long/lat") 109s + abline(0,1) 109s + 109s + data(ozone2) 109s + oz = SpatialPointsDataFrame(ozone2$lon.lat, 109s + data.frame(t(ozone2$y)), 109s + proj4string=CRS("+proj=longlat +ellps=WGS84")) 109s + variogram(X870731~1,oz[!is.na(oz$X870731),]) 109s + utm16 = "+proj=utm +zone=16" 109s + # oz.utm = spTransform(oz, utm16) 109s + oz.utm = as(sf::st_transform(sf::st_as_sf(oz), utm16) , "Spatial") 109s + variogram(X870731~1,oz.utm[!is.na(oz$X870731),]) 109s + 109s + # Timothy Hilton, r-sig-geo, Sept 14, 2008: 109s + 109s + foo <- 109s + structure(list(z = c(-1.95824831109744, -1.9158901643563, 4.22211761150161, 109s + 3.23356929459598, 1.12038389231868, 0.34613850821113, 1.12589932643631, 109s + 23.517912251617, 3.0519158690268, 3.20261431141517, -2.10947106854739 109s + ), lon = c(-125.29228, -82.1556, -98.524722, -99.948333, -104.691741, 109s + -79.420833, -105.100533, -88.291867, -72.171478, -121.556944, 109s + -89.34765), lat = c(49.87217, 48.2167, 55.905833, 56.635833, 109s + 53.916264, 39.063333, 48.307883, 40.0061, 42.537756, 44.448889, 109s + 46.242017)), .Names = c("z", "lon", "lat"), row.names = c(NA, 109s + -11L), class = "data.frame") 109s + 109s + coordinates(foo) <- ~lon+lat 109s + 109s + proj4string(foo) <- CRS('+proj=longlat +ellps=WGS84') 109s + 109s + vg.foo <- variogram(z~1, foo, cloud=TRUE, cutoff=1e10) 109s + 109s + cat('==========\nvariogram:\n') 109s + print(head(vg.foo)) 109s + 109s + cat('==========\nspDistsN1 Distances:\n') 109s + print(spDistsN1(coordinates(foo), coordinates(foo)[1,], longlat=TRUE)) 109s + } 110s Spam version 2.10-0 (2023-10-23) is loaded. 110s Type 'help( Spam)' or 'demo( spam)' for a short introduction 110s and overview of this package. 110s Help for individual functions is also obtained by adding the 110s suffix '.spam' to the function name, e.g. 'help( chol.spam)'. 110s 110s Attaching package: ‘spam’ 110s 110s The following objects are masked from ‘package:base’: 110s 110s backsolve, forwardsolve 110s 110s 110s Try help(fields) to get started. 110s Linking to GEOS 3.12.2, GDAL 3.9.1, PROJ 9.4.0; sf_use_s2() is TRUE 110s WARNING: different compile-time and runtime versions for GEOS found: 110s Linked against: 3.12.2-CAPI-1.18.2 compiled against: 3.12.1-CAPI-1.18.1 110s It is probably a good idea to reinstall sf (and maybe lwgeom too) 110s ========== 110s variogram: 110s dist gamma dir.hor dir.ver id left right 110s 1 3115.1190 8.971063e-04 0 0 var1 2 1 110s 2 1908.0468 1.909846e+01 0 0Warning message: 110s In CPL_crs_from_input(x) : 110s GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order. 110s var1 3 1 110s 3 1405.6211 1.883757e+01 0 0 var1 3 2 110s 4 1837.5667 1.347749e+01 0 0 var1 4 1 110s 5 1522.8765 1.325847e+01 0 0 var1 4 2 110s 6 119.9386 4.886139e-01 0 0 var1 4 3 110s ========== 110s spDistsN1 Distances: 110s [1] 0.0000 3115.1190 1908.0468 1837.5667 1481.6293 3775.6751 1480.4477 110s [8] 3081.7541 4090.4022 665.9348 2683.1516 110s > 111s BEGIN TEST variogram.R 111s 111s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 111s Copyright (C) 2024 The R Foundation for Statistical Computing 111s Platform: x86_64-pc-linux-gnu 111s 111s R is free software and comes with ABSOLUTELY NO WARRANTY. 111s You are welcome to redistribute it under certain conditions. 111s Type 'license()' or 'licence()' for distribution details. 111s 111s R is a collaborative project with many contributors. 111s Type 'contributors()' for more information and 111s 'citation()' on how to cite R or R packages in publications. 111s 111s Type 'demo()' for some demos, 'help()' for on-line help, or 111s 'help.start()' for an HTML browser interface to help. 111s Type 'q()' to quit R. 111s 111s > library(sp) 111s > library(gstat) 111s > data(meuse) 111s > variogram(log(zinc)~1, ~x+y, meuse) 112s np dist gamma dir.hor dir.ver id 112s 1 57 79.29244 0.1234479 0 0 var1 112s 2 299 163.97367 0.2162185 0 0 var1 112s 3 419 267.36483 0.3027859 0 0 var1 112s 4 457 372.73542 0.4121448 0 0 var1 112s 5 547 478.47670 0.4634128 0 0 var1 112s 6 533 585.34058 0.5646933 0 0 var1 112s 7 574 693.14526 0.5689683 0 0 var1 112s 8 564 796.18365 0.6186769 0 0 var1 112s 9 589 903.14650 0.6471479 0 0 var1 112s 10 543 1011.29177 0.6915705 0 0 var1 112s 11 500 1117.86235 0.7033984 0 0 var1 112s 12 477 1221.32810 0.6038770 0 0 var1 112s 13 452 1329.16407 0.6517158 0 0 var1 112s 14 457 1437.25620 0.5665318 0 0 var1 112s 15 415 1543.20248 0.5748227 0 0 var1 112s > 112s > coordinates(meuse) <- ~ x + y 112s > variogram(log(zinc)~1, meuse) 112s np dist gamma dir.hor dir.ver id 112s 1 57 79.29244 0.1234479 0 0 var1 112s 2 299 163.97367 0.2162185 0 0 var1 112s 3 419 267.36483 0.3027859 0 0 var1 112s 4 457 372.73542 0.4121448 0 0 var1 112s 5 547 478.47670 0.4634128 0 0 var1 112s 6 533 585.34058 0.5646933 0 0 var1 112s 7 574 693.14526 0.5689683 0 0 var1 112s 8 564 796.18365 0.6186769 0 0 var1 112s 9 589 903.14650 0.6471479 0 0 var1 112s 10 543 1011.29177 0.6915705 0 0 var1 112s 11 500 1117.86235 0.7033984 0 0 var1 112s 12 477 1221.32810 0.6038770 0 0 var1 112s 13 452 1329.16407 0.6517158 0 0 var1 112s 14 457 1437.25620 0.5665318 0 0 var1 112s 15 415 1543.20248 0.5748227 0 0 var1 112s > 112s > ind=seq(1,155,2) 112s > var1= meuse[ind,] 112s > var2= meuse[-ind,] 112s > g <- gstat(NULL, id = "lead", form = lead ~ 1, data=var1) 112s > g <- gstat(g, id = "zinc", form = zinc ~ 1, data=var2) 112s > v.cross <- variogram(g) 112s > plot(v.cross) 112s > 112s > 112s BEGIN TEST vdist.R 112s 112s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 112s Copyright (C) 2024 The R Foundation for Statistical Computing 112s Platform: x86_64-pc-linux-gnu 112s 112s R is free software and comes with ABSOLUTELY NO WARRANTY. 112s You are welcome to redistribute it under certain conditions. 112s Type 'license()' or 'licence()' for distribution details. 112s 112s R is a collaborative project with many contributors. 112s Type 'contributors()' for more information and 112s 'citation()' on how to cite R or R packages in publications. 112s 112s Type 'demo()' for some demos, 'help()' for on-line help, or 112s 'help.start()' for an HTML browser interface to help. 112s Type 'q()' to quit R. 112s 112s > library(sp) 112s > library(gstat) 112s > 112s > data(meuse) 112s > coordinates(meuse) = ~x+y 112s > data(meuse.grid) 112s > gridded(meuse.grid) = ~x+y 113s > 113s > mg = meuse.grid 113s > gridded(mg) = FALSE 113s > mg= mg[1500,] 113s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 113s + vdist=FALSE, maxdist=1000,nmax=10) 113s [using ordinary kriging] 113s coordinates var1.pred var1.var 113s 1500 (180260, 331300) 5.007376 1.102622 113s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 113s + vdist=TRUE, maxdist=1000,nmax=10) 113s [using ordinary kriging] 113s coordinates var1.pred var1.var 113s 1500 (180260, 331300) 5.50671 1.100095 113s > 113s autopkgtest [16:09:52]: test run-unit-test: -----------------------] 113s autopkgtest [16:09:52]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 113s run-unit-test PASS 114s autopkgtest [16:09:53]: test pkg-r-autopkgtest: preparing testbed 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s Starting pkgProblemResolver with broken count: 0 115s Starting 2 pkgProblemResolver with broken count: 0 115s Done 115s The following additional packages will be installed: 115s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 115s dctrl-tools g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc 115s gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 115s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8 115s libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev 115s libgfortran-14-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 115s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 115s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 115s libpkgconf3 libpng-dev libquadmath0 libreadline-dev libstdc++-14-dev 115s libtirpc-dev libtsan2 libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin 115s r-base-dev r-cran-backports r-cran-base64url r-cran-batchtools r-cran-brew 115s r-cran-checkmate r-cran-cli r-cran-crayon r-cran-data.table r-cran-fs 115s r-cran-future.batchtools r-cran-glue r-cran-hms r-cran-lifecycle 115s r-cran-pkgconfig r-cran-prettyunits r-cran-progress r-cran-r6 115s r-cran-rappdirs r-cran-stringi r-cran-vctrs r-cran-withr zlib1g-dev 115s Suggested packages: 115s cpp-doc gcc-14-locales cpp-14-doc debtags g++-multilib g++-14-multilib 115s gcc-14-doc gcc-multilib manpages-dev autoconf automake libtool flex bison 115s gdb gcc-doc gcc-14-multilib gdb-x86-64-linux-gnu gfortran-multilib 115s gfortran-doc gfortran-14-multilib gfortran-14-doc libcoarrays-dev 115s liblapack-doc icu-doc liblzma-doc ncurses-doc readline-doc libstdc++-14-doc 115s texlive-base texlive-latex-base texlive-plain-generic 115s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 115s texlive-latex-recommended texlive-latex-extra texinfo r-cran-knitr 115s r-cran-rmarkdown r-cran-doparallel r-cran-foreach r-cran-parallelmap 115s r-cran-rpart r-cran-snow r-cran-tibble r-cran-rstudioapi gridengine-client 115s slurm-client r-cran-lubridate r-cran-covr r-cran-testthat r-cran-roxygen2 115s Recommended packages: 115s bzip2-doc libpng-tools r-cran-testthat r-cran-base64enc r-cran-openssl 115s r-cran-ranger r-cran-fastmatch r-cran-devtools r-cran-ggplot2 r-cran-knitr 115s r-cran-rmarkdown r-cran-tinytest r-cran-tibble r-cran-callr r-cran-covr 115s r-cran-htmltools r-cran-htmlwidgets r-cran-mockery r-cran-processx r-cran-ps 115s r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-bit64 r-cran-bit 115s r-cran-r.utils r-cran-yaml r-cran-markdown r-cran-pillar r-cran-spelling 115s r-cran-r.rsp r-cran-dplyr r-cran-rsqlite r-cran-waldo r-cran-lintr 115s r-cran-tidyverse r-cran-generics r-cran-pkgdown r-cran-xml2 r-cran-zeallot 116s The following NEW packages will be installed: 116s autopkgtest-satdep build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu 116s cpp-x86-64-linux-gnu dctrl-tools g++ g++-14 g++-14-x86-64-linux-gnu 116s g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu 116s gfortran gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu 116s icu-devtools libasan8 libblas-dev libbz2-dev libcc1-0 libdeflate-dev 116s libgcc-14-dev libgfortran-14-dev libhwasan0 libicu-dev libisl23 libitm1 116s libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 116s liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev 116s libpcre2-posix3 libpkgconf3 libpng-dev libquadmath0 libreadline-dev 116s libstdc++-14-dev libtirpc-dev libtsan2 libubsan1 pkg-r-autopkgtest pkgconf 116s pkgconf-bin r-base-dev r-cran-backports r-cran-base64url r-cran-batchtools 116s r-cran-brew r-cran-checkmate r-cran-cli r-cran-crayon r-cran-data.table 116s r-cran-fs r-cran-future.batchtools r-cran-glue r-cran-hms r-cran-lifecycle 116s r-cran-pkgconfig r-cran-prettyunits r-cran-progress r-cran-r6 116s r-cran-rappdirs r-cran-stringi r-cran-vctrs r-cran-withr zlib1g-dev 116s 0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded. 116s Need to get 109 MB/109 MB of archives. 116s After this operation, 370 MB of additional disk space will be used. 116s Get:1 /tmp/autopkgtest.28rYIF/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [768 B] 116s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 116s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 116s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-7ubuntu1 [11.9 MB] 116s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-7ubuntu1 [1026 B] 116s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 116s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 116s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-7ubuntu1 [47.6 kB] 116s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-7ubuntu1 [29.1 kB] 116s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-7ubuntu1 [2998 kB] 116s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-7ubuntu1 [1316 kB] 116s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-7ubuntu1 [2733 kB] 116s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-7ubuntu1 [1177 kB] 116s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-7ubuntu1 [1634 kB] 116s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-7ubuntu1 [153 kB] 116s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-7ubuntu1 [2814 kB] 116s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-7ubuntu1 [23.4 MB] 116s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-7ubuntu1 [526 kB] 116s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 116s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 116s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-7ubuntu1 [2503 kB] 116s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-7ubuntu1 [13.4 MB] 116s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-7ubuntu1 [19.8 kB] 116s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 116s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 116s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 116s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 116s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-7ubuntu1 [965 kB] 116s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-7ubuntu1 [12.6 MB] 116s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-7ubuntu1 [11.6 kB] 116s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1022 B] 116s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.1.0-2ubuntu1 [1172 B] 116s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 74.2-1ubuntu4 [213 kB] 116s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.0-3build2 [172 kB] 116s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 116s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.21-1 [56.9 kB] 116s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 74.2-1ubuntu4 [11.9 MB] 116s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu2 [295 kB] 116s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 116s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 116s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.0-3build2 [5249 kB] 116s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5-2 [384 kB] 116s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu3 [214 kB] 116s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu3 [201 kB] 116s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu3 [6768 B] 116s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.42-4ubuntu3 [747 kB] 116s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-3ubuntu1 [31.0 kB] 116s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 116s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.44-1 [266 kB] 116s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-5 [169 kB] 116s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.2-2 [176 kB] 116s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-3ubuntu1 [21.2 kB] 116s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-3ubuntu1 [16.8 kB] 116s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 116s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.1-1 [4338 B] 116s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 116s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-backports amd64 1.5.0-2 [121 kB] 116s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64url amd64 1.4-2build1 [26.5 kB] 116s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brew all 1.0-10-1 [77.7 kB] 116s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-checkmate amd64 2.3.1-1 [713 kB] 116s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-data.table amd64 1.15.4+dfsg-2.2 [1860 kB] 116s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.4+dfsg-1 [245 kB] 116s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 116s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 116s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 116s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 116s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 116s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 116s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 116s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 116s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 116s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 116s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 116s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 116s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.0+dfsg-1 [228 kB] 116s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-batchtools amd64 0.9.17+dfsg-1 [712 kB] 116s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future.batchtools all 0.12.1+dfsg-1 [185 kB] 117s Fetched 109 MB in 1s (133 MB/s) 117s Selecting previously unselected package libisl23:amd64. 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81914 files and directories currently installed.) 117s Preparing to unpack .../00-libisl23_0.27-1_amd64.deb ... 117s Unpacking libisl23:amd64 (0.27-1) ... 117s Selecting previously unselected package libmpc3:amd64. 117s Preparing to unpack .../01-libmpc3_1.3.1-1build2_amd64.deb ... 117s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 117s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 117s Preparing to unpack .../02-cpp-14-x86-64-linux-gnu_14.2.0-7ubuntu1_amd64.deb ... 117s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 117s Selecting previously unselected package cpp-14. 117s Preparing to unpack .../03-cpp-14_14.2.0-7ubuntu1_amd64.deb ... 117s Unpacking cpp-14 (14.2.0-7ubuntu1) ... 117s Selecting previously unselected package cpp-x86-64-linux-gnu. 117s Preparing to unpack .../04-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 117s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 117s Selecting previously unselected package cpp. 117s Preparing to unpack .../05-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 117s Unpacking cpp (4:14.1.0-2ubuntu1) ... 117s Selecting previously unselected package libcc1-0:amd64. 117s Preparing to unpack .../06-libcc1-0_14.2.0-7ubuntu1_amd64.deb ... 117s Unpacking libcc1-0:amd64 (14.2.0-7ubuntu1) ... 117s Selecting previously unselected package libitm1:amd64. 117s Preparing to unpack .../07-libitm1_14.2.0-7ubuntu1_amd64.deb ... 117s Unpacking libitm1:amd64 (14.2.0-7ubuntu1) ... 117s Selecting previously unselected package libasan8:amd64. 117s Preparing to unpack .../08-libasan8_14.2.0-7ubuntu1_amd64.deb ... 117s Unpacking libasan8:amd64 (14.2.0-7ubuntu1) ... 117s Selecting previously unselected package liblsan0:amd64. 117s Preparing to unpack .../09-liblsan0_14.2.0-7ubuntu1_amd64.deb ... 117s Unpacking liblsan0:amd64 (14.2.0-7ubuntu1) ... 117s Selecting previously unselected package libtsan2:amd64. 117s Preparing to unpack .../10-libtsan2_14.2.0-7ubuntu1_amd64.deb ... 117s Unpacking libtsan2:amd64 (14.2.0-7ubuntu1) ... 117s Selecting previously unselected package libubsan1:amd64. 117s Preparing to unpack .../11-libubsan1_14.2.0-7ubuntu1_amd64.deb ... 117s Unpacking libubsan1:amd64 (14.2.0-7ubuntu1) ... 117s Selecting previously unselected package libhwasan0:amd64. 117s Preparing to unpack .../12-libhwasan0_14.2.0-7ubuntu1_amd64.deb ... 117s Unpacking libhwasan0:amd64 (14.2.0-7ubuntu1) ... 117s Selecting previously unselected package libquadmath0:amd64. 117s Preparing to unpack .../13-libquadmath0_14.2.0-7ubuntu1_amd64.deb ... 117s Unpacking libquadmath0:amd64 (14.2.0-7ubuntu1) ... 118s Selecting previously unselected package libgcc-14-dev:amd64. 118s Preparing to unpack .../14-libgcc-14-dev_14.2.0-7ubuntu1_amd64.deb ... 118s Unpacking libgcc-14-dev:amd64 (14.2.0-7ubuntu1) ... 118s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 118s Preparing to unpack .../15-gcc-14-x86-64-linux-gnu_14.2.0-7ubuntu1_amd64.deb ... 118s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 118s Selecting previously unselected package gcc-14. 118s Preparing to unpack .../16-gcc-14_14.2.0-7ubuntu1_amd64.deb ... 118s Unpacking gcc-14 (14.2.0-7ubuntu1) ... 118s Selecting previously unselected package gcc-x86-64-linux-gnu. 118s Preparing to unpack .../17-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 118s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 118s Selecting previously unselected package gcc. 118s Preparing to unpack .../18-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 118s Unpacking gcc (4:14.1.0-2ubuntu1) ... 118s Selecting previously unselected package libstdc++-14-dev:amd64. 118s Preparing to unpack .../19-libstdc++-14-dev_14.2.0-7ubuntu1_amd64.deb ... 118s Unpacking libstdc++-14-dev:amd64 (14.2.0-7ubuntu1) ... 118s Selecting previously unselected package g++-14-x86-64-linux-gnu. 118s Preparing to unpack .../20-g++-14-x86-64-linux-gnu_14.2.0-7ubuntu1_amd64.deb ... 118s Unpacking g++-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 118s Selecting previously unselected package g++-14. 118s Preparing to unpack .../21-g++-14_14.2.0-7ubuntu1_amd64.deb ... 118s Unpacking g++-14 (14.2.0-7ubuntu1) ... 118s Selecting previously unselected package g++-x86-64-linux-gnu. 118s Preparing to unpack .../22-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 118s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 118s Selecting previously unselected package g++. 118s Preparing to unpack .../23-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 118s Unpacking g++ (4:14.1.0-2ubuntu1) ... 119s Selecting previously unselected package build-essential. 119s Preparing to unpack .../24-build-essential_12.10ubuntu1_amd64.deb ... 119s Unpacking build-essential (12.10ubuntu1) ... 119s Selecting previously unselected package dctrl-tools. 119s Preparing to unpack .../25-dctrl-tools_2.24-3build3_amd64.deb ... 119s Unpacking dctrl-tools (2.24-3build3) ... 119s Selecting previously unselected package libgfortran-14-dev:amd64. 119s Preparing to unpack .../26-libgfortran-14-dev_14.2.0-7ubuntu1_amd64.deb ... 119s Unpacking libgfortran-14-dev:amd64 (14.2.0-7ubuntu1) ... 119s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 119s Preparing to unpack .../27-gfortran-14-x86-64-linux-gnu_14.2.0-7ubuntu1_amd64.deb ... 119s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 119s Selecting previously unselected package gfortran-14. 119s Preparing to unpack .../28-gfortran-14_14.2.0-7ubuntu1_amd64.deb ... 119s Unpacking gfortran-14 (14.2.0-7ubuntu1) ... 119s Selecting previously unselected package gfortran-x86-64-linux-gnu. 119s Preparing to unpack .../29-gfortran-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 119s Unpacking gfortran-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 119s Selecting previously unselected package gfortran. 119s Preparing to unpack .../30-gfortran_4%3a14.1.0-2ubuntu1_amd64.deb ... 119s Unpacking gfortran (4:14.1.0-2ubuntu1) ... 119s Selecting previously unselected package icu-devtools. 119s Preparing to unpack .../31-icu-devtools_74.2-1ubuntu4_amd64.deb ... 119s Unpacking icu-devtools (74.2-1ubuntu4) ... 119s Selecting previously unselected package libblas-dev:amd64. 119s Preparing to unpack .../32-libblas-dev_3.12.0-3build2_amd64.deb ... 119s Unpacking libblas-dev:amd64 (3.12.0-3build2) ... 119s Selecting previously unselected package libbz2-dev:amd64. 119s Preparing to unpack .../33-libbz2-dev_1.0.8-6_amd64.deb ... 119s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 119s Selecting previously unselected package libdeflate-dev:amd64. 119s Preparing to unpack .../34-libdeflate-dev_1.21-1_amd64.deb ... 119s Unpacking libdeflate-dev:amd64 (1.21-1) ... 119s Selecting previously unselected package libicu-dev:amd64. 119s Preparing to unpack .../35-libicu-dev_74.2-1ubuntu4_amd64.deb ... 119s Unpacking libicu-dev:amd64 (74.2-1ubuntu4) ... 119s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 119s Preparing to unpack .../36-libjpeg-turbo8-dev_2.1.5-2ubuntu2_amd64.deb ... 119s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu2) ... 119s Selecting previously unselected package libjpeg8-dev:amd64. 119s Preparing to unpack .../37-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 119s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 119s Selecting previously unselected package libjpeg-dev:amd64. 119s Preparing to unpack .../38-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 119s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 119s Selecting previously unselected package liblapack-dev:amd64. 119s Preparing to unpack .../39-liblapack-dev_3.12.0-3build2_amd64.deb ... 119s Unpacking liblapack-dev:amd64 (3.12.0-3build2) ... 120s Selecting previously unselected package libncurses-dev:amd64. 120s Preparing to unpack .../40-libncurses-dev_6.5-2_amd64.deb ... 120s Unpacking libncurses-dev:amd64 (6.5-2) ... 120s Selecting previously unselected package libpcre2-16-0:amd64. 120s Preparing to unpack .../41-libpcre2-16-0_10.42-4ubuntu3_amd64.deb ... 120s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu3) ... 120s Selecting previously unselected package libpcre2-32-0:amd64. 120s Preparing to unpack .../42-libpcre2-32-0_10.42-4ubuntu3_amd64.deb ... 120s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu3) ... 120s Selecting previously unselected package libpcre2-posix3:amd64. 120s Preparing to unpack .../43-libpcre2-posix3_10.42-4ubuntu3_amd64.deb ... 120s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu3) ... 120s Selecting previously unselected package libpcre2-dev:amd64. 120s Preparing to unpack .../44-libpcre2-dev_10.42-4ubuntu3_amd64.deb ... 120s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu3) ... 120s Selecting previously unselected package libpkgconf3:amd64. 120s Preparing to unpack .../45-libpkgconf3_1.8.1-3ubuntu1_amd64.deb ... 120s Unpacking libpkgconf3:amd64 (1.8.1-3ubuntu1) ... 120s Selecting previously unselected package zlib1g-dev:amd64. 120s Preparing to unpack .../46-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 120s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 120s Selecting previously unselected package libpng-dev:amd64. 120s Preparing to unpack .../47-libpng-dev_1.6.44-1_amd64.deb ... 120s Unpacking libpng-dev:amd64 (1.6.44-1) ... 120s Selecting previously unselected package libreadline-dev:amd64. 120s Preparing to unpack .../48-libreadline-dev_8.2-5_amd64.deb ... 120s Unpacking libreadline-dev:amd64 (8.2-5) ... 120s Selecting previously unselected package liblzma-dev:amd64. 120s Preparing to unpack .../49-liblzma-dev_5.6.2-2_amd64.deb ... 120s Unpacking liblzma-dev:amd64 (5.6.2-2) ... 120s Selecting previously unselected package pkgconf-bin. 120s Preparing to unpack .../50-pkgconf-bin_1.8.1-3ubuntu1_amd64.deb ... 120s Unpacking pkgconf-bin (1.8.1-3ubuntu1) ... 120s Selecting previously unselected package pkgconf:amd64. 120s Preparing to unpack .../51-pkgconf_1.8.1-3ubuntu1_amd64.deb ... 120s Unpacking pkgconf:amd64 (1.8.1-3ubuntu1) ... 120s Selecting previously unselected package libtirpc-dev:amd64. 120s Preparing to unpack .../52-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 120s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 120s Selecting previously unselected package r-base-dev. 120s Preparing to unpack .../53-r-base-dev_4.4.1-1_all.deb ... 120s Unpacking r-base-dev (4.4.1-1) ... 120s Selecting previously unselected package pkg-r-autopkgtest. 120s Preparing to unpack .../54-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 120s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 120s Selecting previously unselected package r-cran-backports. 120s Preparing to unpack .../55-r-cran-backports_1.5.0-2_amd64.deb ... 120s Unpacking r-cran-backports (1.5.0-2) ... 120s Selecting previously unselected package r-cran-base64url. 120s Preparing to unpack .../56-r-cran-base64url_1.4-2build1_amd64.deb ... 120s Unpacking r-cran-base64url (1.4-2build1) ... 120s Selecting previously unselected package r-cran-brew. 120s Preparing to unpack .../57-r-cran-brew_1.0-10-1_all.deb ... 120s Unpacking r-cran-brew (1.0-10-1) ... 120s Selecting previously unselected package r-cran-checkmate. 120s Preparing to unpack .../58-r-cran-checkmate_2.3.1-1_amd64.deb ... 120s Unpacking r-cran-checkmate (2.3.1-1) ... 120s Selecting previously unselected package r-cran-data.table. 120s Preparing to unpack .../59-r-cran-data.table_1.15.4+dfsg-2.2_amd64.deb ... 120s Unpacking r-cran-data.table (1.15.4+dfsg-2.2) ... 120s Selecting previously unselected package r-cran-fs. 120s Preparing to unpack .../60-r-cran-fs_1.6.4+dfsg-1_amd64.deb ... 120s Unpacking r-cran-fs (1.6.4+dfsg-1) ... 120s Selecting previously unselected package r-cran-crayon. 120s Preparing to unpack .../61-r-cran-crayon_1.5.2-1_all.deb ... 120s Unpacking r-cran-crayon (1.5.2-1) ... 120s Selecting previously unselected package r-cran-cli. 120s Preparing to unpack .../62-r-cran-cli_3.6.2-1_amd64.deb ... 120s Unpacking r-cran-cli (3.6.2-1) ... 120s Selecting previously unselected package r-cran-glue. 120s Preparing to unpack .../63-r-cran-glue_1.7.0-1_amd64.deb ... 120s Unpacking r-cran-glue (1.7.0-1) ... 120s Selecting previously unselected package r-cran-lifecycle. 120s Preparing to unpack .../64-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 120s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 120s Selecting previously unselected package r-cran-pkgconfig. 120s Preparing to unpack .../65-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 120s Unpacking r-cran-pkgconfig 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(1.6.4+dfsg-1) ... 121s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu2) ... 121s Setting up libncurses-dev:amd64 (6.5-2) ... 121s Setting up r-cran-withr (3.0.0+dfsg-1) ... 121s Setting up r-cran-backports (1.5.0-2) ... 121s Setting up r-cran-prettyunits (1.2.0-1) ... 121s Setting up r-cran-checkmate (2.3.1-1) ... 121s Setting up libreadline-dev:amd64 (8.2-5) ... 121s Setting up r-cran-data.table (1.15.4+dfsg-2.2) ... 121s Setting up r-cran-glue (1.7.0-1) ... 121s Setting up r-cran-cli (3.6.2-1) ... 121s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 121s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu3) ... 121s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 121s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu3) ... 121s Setting up r-cran-brew (1.0-10-1) ... 121s Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 121s Setting up libpkgconf3:amd64 (1.8.1-3ubuntu1) ... 121s Setting up r-cran-stringi (1.8.3-1) ... 121s Setting up libquadmath0:amd64 (14.2.0-7ubuntu1) ... 121s Setting up 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Processing triggers for install-info (7.1.1-1) ... 122s Processing triggers for libc-bin (2.40-1ubuntu3) ... 124s (Reading database ... 85748 files and directories currently installed.) 124s Removing autopkgtest-satdep (0) ... 124s autopkgtest [16:10:03]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 124s autopkgtest [16:10:03]: test pkg-r-autopkgtest: [----------------------- 124s Test: Try to load the R library gstat 124s 124s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 124s Copyright (C) 2024 The R Foundation for Statistical Computing 124s Platform: x86_64-pc-linux-gnu 124s 124s R is free software and comes with ABSOLUTELY NO WARRANTY. 124s You are welcome to redistribute it under certain conditions. 124s Type 'license()' or 'licence()' for distribution details. 124s 124s R is a collaborative project with many contributors. 124s Type 'contributors()' for more information and 124s 'citation()' on how to cite R or R packages in publications. 124s 124s Type 'demo()' for some demos, 'help()' for on-line help, or 124s 'help.start()' for an HTML browser interface to help. 124s Type 'q()' to quit R. 124s 124s > library('gstat') 125s > 125s > 125s Other tests are currently unsupported! 125s They will be progressively added. 125s autopkgtest [16:10:04]: test pkg-r-autopkgtest: -----------------------] 125s pkg-r-autopkgtest PASS 125s autopkgtest [16:10:04]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 125s autopkgtest [16:10:04]: @@@@@@@@@@@@@@@@@@@@ summary 125s run-unit-test PASS 125s pkg-r-autopkgtest PASS 136s nova [W] Skipping flock for amd64 136s Creating nova instance adt-plucky-amd64-r-cran-gstat-20241102-153240-juju-7f2275-prod-proposed-migration-environment-2-60e53ae5-47bf-4892-b663-91aa5026cfd3 from image adt/ubuntu-plucky-amd64-server-20241102.img (UUID 640916e2-9412-4fa2-8155-f822a4055b51)...