0s autopkgtest [17:26:59]: starting date and time: 2025-02-03 17:26:59+0000 0s autopkgtest [17:26:59]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [17:26:59]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.oyxe2asi/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-vegan --apt-upgrade r-cran-adegenet --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-vegan/2.6-10+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@lcy02-10.secgroup --name adt-plucky-amd64-r-cran-adegenet-20250203-172658-juju-7f2275-prod-proposed-migration-environment-15-4e2fe3a1-5a86-41d7-b1d6-9537279d28ef --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 44s autopkgtest [17:27:43]: testbed dpkg architecture: amd64 44s autopkgtest [17:27:43]: testbed apt version: 2.9.18 44s autopkgtest [17:27:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 44s autopkgtest [17:27:43]: testbed release detected to be: None 44s autopkgtest [17:27:43]: updating testbed package index (apt update) 44s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 44s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 44s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 44s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 44s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [897 kB] 45s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.0 kB] 45s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.5 kB] 45s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [124 kB] 45s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [94.8 kB] 45s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [302 kB] 45s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [838 kB] 45s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [7484 B] 45s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [1616 B] 46s Fetched 2468 kB in 0s (6389 kB/s) 46s Reading package lists...+ lsb_release --codename --short 46s 46s Reading package lists... 46s Building dependency tree... 46s Reading state information... 46s Calculating upgrade...+ RELEASE=plucky 46s + cat 46s + [ plucky != trusty ] 46s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 46s 47s The following packages will be upgraded: 47s initramfs-tools initramfs-tools-bin initramfs-tools-core 47s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 47s Need to get 84.0 kB of archives. 47s After this operation, 9216 B of additional disk space will be used. 47s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.145ubuntu1 [7942 B] 47s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.145ubuntu1 [51.2 kB] 47s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.145ubuntu1 [24.8 kB] 47s Fetched 84.0 kB in 0s (3905 kB/s) 47s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108876 files and directories currently installed.) 47s Preparing to unpack .../initramfs-tools_0.145ubuntu1_all.deb ... 47s Unpacking initramfs-tools (0.145ubuntu1) over (0.142ubuntu35) ... 47s Preparing to unpack .../initramfs-tools-core_0.145ubuntu1_all.deb ... 47s Unpacking initramfs-tools-core (0.145ubuntu1) over (0.142ubuntu35) ... 47s Preparing to unpack .../initramfs-tools-bin_0.145ubuntu1_amd64.deb ... 47s Unpacking initramfs-tools-bin (0.145ubuntu1) over (0.142ubuntu35) ... 47s Setting up initramfs-tools-bin (0.145ubuntu1) ... 47s Setting up initramfs-tools-core (0.145ubuntu1) ... 47s Setting up initramfs-tools (0.145ubuntu1) ... 47s update-initramfs: deferring update (trigger activated) 47s Processing triggers for man-db (2.13.0-1) ... 48s Processing triggers for initramfs-tools (0.145ubuntu1) ... 48s update-initramfs: Generating /boot/initrd.img-6.12.0-12-generic 48s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 57s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 57s + /usr/lib/apt/apt-helper analyze-pattern ?true 57s + uname+ -r 57s sed s/\./\\./g 57s + running_kernel_pattern=^linux-.*6\.12\.0-12-generic.* 57s + apt list ?obsolete 57s + tail -n+2 57s + cut+ -d/grep -v ^linux-.*6\.12\.0-12-generic.* 57s -f1 58s + true 58s + obsolete_pkgs= 58s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove 58s Reading package lists... 58s Building dependency tree... 58s Reading state information... 58s + grep -q trusty /etc/lsb-release 58s + [ ! -d /usr/share/doc/unattended-upgrades ] 58s + [ ! -d /usr/share/doc/lxd ] 58s + [ ! -d /usr/share/doc/lxd-client ] 58s + [ ! -d /usr/share/doc/snapd ] 58s + type iptables 58s + cat 58s + chmod 755 /etc/rc.local 58s + . /etc/rc.local 58s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 58s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 58s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 58s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 58s + uname -m 58s + [ x86_64 = ppc64le ] 58s + [ -d /run/systemd/system ] 58s + systemd-detect-virt --quiet --vm 58s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 58s + cat 58s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 58s + echo COMPRESS=lz4 58s autopkgtest [17:27:57]: upgrading testbed (apt dist-upgrade and autopurge) 58s Reading package lists... 59s Building dependency tree... 59s Reading state information... 59s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 59s Starting 2 pkgProblemResolver with broken count: 0 59s Done 59s Entering ResolveByKeep 60s 60s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 60s Reading package lists... 60s Building dependency tree... 60s Reading state information... 61s Starting pkgProblemResolver with broken count: 0 61s Starting 2 pkgProblemResolver with broken count: 0 61s Done 61s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 61s autopkgtest [17:28:00]: rebooting testbed after setup commands that affected boot 65s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 78s autopkgtest [17:28:17]: testbed running kernel: Linux 6.12.0-12-generic #12-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 22 16:36:37 UTC 2025 78s autopkgtest [17:28:17]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-adegenet 79s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-adegenet 2.1.10-1 (dsc) [2280 B] 79s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-adegenet 2.1.10-1 (tar) [1701 kB] 79s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-adegenet 2.1.10-1 (diff) [4872 B] 80s gpgv: Signature made Mon Jan 30 12:39:21 2023 UTC 80s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 80s gpgv: issuer "tille@debian.org" 80s gpgv: Can't check signature: No public key 80s dpkg-source: warning: cannot verify inline signature for ./r-cran-adegenet_2.1.10-1.dsc: no acceptable signature found 80s autopkgtest [17:28:19]: testing package r-cran-adegenet version 2.1.10-1 80s autopkgtest [17:28:19]: build not needed 84s autopkgtest [17:28:23]: test run-unit-test: preparing testbed 84s Reading package lists... 84s Building dependency tree... 84s Reading state information... 84s Starting pkgProblemResolver with broken count: 0 84s Starting 2 pkgProblemResolver with broken count: 0 84s Done 85s The following NEW packages will be installed: 85s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 85s fonts-font-awesome fonts-glyphicons-halflings javascript-common libamd3 85s libblas3 libcairo2 libcolamd3 libdatrie1 libdeflate0 libfontconfig1 85s libgfortran5 libglpk40 libgomp1 libgraphite2-3 libharfbuzz0b libice6 85s libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 85s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 85s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-microplugin.js 85s libjs-popper.js libjs-sifter.js libjs-twitter-bootstrap-datepicker 85s liblapack3 liblerc4 libltdl7 libpango-1.0-0 libpangocairo-1.0-0 85s libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 85s libsuitesparseconfig7 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 85s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 85s littler node-bootstrap-sass node-html5shiv node-normalize.css r-base-core 85s r-cran-ade4 r-cran-adegenet r-cran-ape r-cran-base64enc r-cran-boot 85s r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli 85s r-cran-cluster r-cran-colorspace r-cran-commonmark r-cran-cpp11 85s r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr 85s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome 85s r-cran-fs r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable 85s r-cran-htmltools r-cran-httpuv r-cran-igraph r-cran-isoband r-cran-jquerylib 85s r-cran-jsonlite r-cran-labeling r-cran-later r-cran-lattice r-cran-lifecycle 85s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-memoise 85s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-permute 85s r-cran-pillar r-cran-pixmap r-cran-pkgbuild r-cran-pkgconfig 85s r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-praise r-cran-processx 85s r-cran-promises r-cran-ps r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer 85s r-cran-rcpp r-cran-rcpparmadillo r-cran-reshape2 r-cran-rlang 85s r-cran-rprojroot r-cran-sass r-cran-scales r-cran-segmented r-cran-seqinr 85s r-cran-shiny r-cran-sourcetools r-cran-sp r-cran-stringi r-cran-stringr 85s r-cran-testthat r-cran-tibble r-cran-tidyselect r-cran-utf8 r-cran-vctrs 85s r-cran-vegan r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xtable 85s unzip x11-common xdg-utils zip 85s 0 upgraded, 157 newly installed, 0 to remove and 0 not upgraded. 85s Need to get 128 MB of archives. 85s After this operation, 254 MB of additional disk space will be used. 85s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 85s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 85s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 85s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 85s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 85s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 85s Get:7 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 85s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 11+nmu1 [5936 B] 85s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-13ubuntu1 [148 kB] 85s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [13.4 kB] 85s Get:11 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd3 amd64 1:7.8.3+dfsg-2 [31.1 kB] 85s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB] 85s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 85s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 85s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 85s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 85s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 85s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [19.5 kB] 85s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 85s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 85s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-13ubuntu1 [909 kB] 85s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libltdl7 amd64 2.5.4-2.1 [46.1 kB] 85s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 libglpk40 amd64 5.0-1build2 [369 kB] 85s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 85s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 85s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 85s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 85s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 85s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 85s Get:30 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 85s Get:31 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 85s Get:32 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 85s Get:33 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 85s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 85s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 85s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 85s Get:37 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 85s Get:38 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 85s Get:39 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 85s Get:40 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 85s Get:41 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 85s Get:42 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 85s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB] 85s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 85s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 85s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 85s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.1-1 [255 kB] 85s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.1-1 [52.6 kB] 85s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.1-1 [29.1 kB] 85s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 85s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 85s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 85s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 85s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 85s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 85s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 85s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 85s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 85s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 85s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 85s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 85s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 85s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 85s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 85s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.2-1build1 [28.9 MB] 85s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 85s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 85s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 85s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 85s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 85s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 85s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pixmap all 0.4-13-1 [213 kB] 85s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 85s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sp amd64 1:2.1-4+dfsg-1 [1472 kB] 85s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 85s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 85s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpparmadillo amd64 14.2.2-1-1 [864 kB] 85s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ade4 amd64 1.7-22-1 [5333 kB] 85s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.3-1 [1348 kB] 85s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 85s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 86s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 86s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 86s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-2-1 [4456 kB] 86s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 86s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 86s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.1-1 [233 kB] 86s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-igraph amd64 2.1.4-1 [5357 kB] 86s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB] 86s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 86s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ape amd64 5.8-1-1 [2918 kB] 86s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 86s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 86s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 86s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 86s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 86s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 86s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB] 86s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 86s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 86s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 86s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 86s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 86s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 86s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 86s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 86s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 86s Get:108 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 86s Get:109 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 86s Get:110 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 86s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 86s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 86s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 86s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 86s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.9.1+dfsg-1 [3111 kB] 86s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 86s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 86s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 86s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 86s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 86s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 86s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 86s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 86s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 86s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 86s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 86s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 86s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 86s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 86s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 86s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-segmented all 2.1-3-1 [1366 kB] 86s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-seqinr amd64 4.2-36-1 [4015 kB] 86s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-boot all 1.3-31-1 [635 kB] 86s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 86s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 86s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 86s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] 86s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 86s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 86s Get:140 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 86s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-permute all 0.9-7-1 [228 kB] 86s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cluster amd64 2.1.8-1 [579 kB] 86s Get:143 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-vegan amd64 2.6-10+dfsg-1 [3146 kB] 86s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-adegenet amd64 2.1.10-1 [2709 kB] 86s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 86s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.8.1-1 [397 kB] 86s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.5-1 [356 kB] 86s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 86s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 86s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 86s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 86s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 86s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] 86s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 86s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 86s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-1 [150 kB] 86s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.1.1-1 [1636 kB] 87s Preconfiguring packages ... 87s Fetched 128 MB in 1s (116 MB/s) 87s Selecting previously unselected package fonts-dejavu-mono. 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108876 files and directories currently installed.) 87s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ... 87s Unpacking fonts-dejavu-mono (2.37-8) ... 87s Selecting previously unselected package fonts-dejavu-core. 87s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ... 87s Unpacking fonts-dejavu-core (2.37-8) ... 87s Selecting previously unselected package fontconfig-config. 87s Preparing to unpack .../002-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 87s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 87s Selecting previously unselected package libfontconfig1:amd64. 87s Preparing to unpack .../003-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 87s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 87s Selecting previously unselected package fontconfig. 87s Preparing to unpack .../004-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ... 87s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 87s Selecting previously unselected package fonts-font-awesome. 87s Preparing to unpack .../005-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 87s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 87s Selecting previously unselected package fonts-glyphicons-halflings. 87s Preparing to unpack .../006-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 87s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 87s Selecting previously unselected package javascript-common. 87s Preparing to unpack .../007-javascript-common_11+nmu1_all.deb ... 87s Unpacking javascript-common (11+nmu1) ... 87s Selecting previously unselected package libgomp1:amd64. 87s Preparing to unpack .../008-libgomp1_14.2.0-13ubuntu1_amd64.deb ... 87s Unpacking libgomp1:amd64 (14.2.0-13ubuntu1) ... 87s Selecting previously unselected package libsuitesparseconfig7:amd64. 87s Preparing to unpack .../009-libsuitesparseconfig7_1%3a7.8.3+dfsg-2_amd64.deb ... 87s Unpacking libsuitesparseconfig7:amd64 (1:7.8.3+dfsg-2) ... 88s Selecting previously unselected package libamd3:amd64. 88s Preparing to unpack .../010-libamd3_1%3a7.8.3+dfsg-2_amd64.deb ... 88s Unpacking libamd3:amd64 (1:7.8.3+dfsg-2) ... 88s Selecting previously unselected package libblas3:amd64. 88s Preparing to unpack .../011-libblas3_3.12.0-4_amd64.deb ... 88s Unpacking libblas3:amd64 (3.12.0-4) ... 88s Selecting previously unselected package libpixman-1-0:amd64. 88s Preparing to unpack .../012-libpixman-1-0_0.44.0-3_amd64.deb ... 88s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 88s Selecting previously unselected package libxcb-render0:amd64. 88s Preparing to unpack .../013-libxcb-render0_1.17.0-2_amd64.deb ... 88s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 88s Selecting previously unselected package libxcb-shm0:amd64. 88s Preparing to unpack .../014-libxcb-shm0_1.17.0-2_amd64.deb ... 88s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 88s Selecting previously unselected package libxrender1:amd64. 88s Preparing to unpack .../015-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 88s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 88s Selecting previously unselected package libcairo2:amd64. 88s Preparing to unpack .../016-libcairo2_1.18.2-2_amd64.deb ... 88s Unpacking libcairo2:amd64 (1.18.2-2) ... 88s Selecting previously unselected package libcolamd3:amd64. 88s Preparing to unpack .../017-libcolamd3_1%3a7.8.3+dfsg-2_amd64.deb ... 88s Unpacking libcolamd3:amd64 (1:7.8.3+dfsg-2) ... 88s Selecting previously unselected package libdatrie1:amd64. 88s Preparing to unpack .../018-libdatrie1_0.2.13-3build1_amd64.deb ... 88s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 88s Selecting previously unselected package libdeflate0:amd64. 88s Preparing to unpack .../019-libdeflate0_1.23-1_amd64.deb ... 88s Unpacking libdeflate0:amd64 (1.23-1) ... 88s Selecting previously unselected package libgfortran5:amd64. 88s Preparing to unpack .../020-libgfortran5_14.2.0-13ubuntu1_amd64.deb ... 88s Unpacking libgfortran5:amd64 (14.2.0-13ubuntu1) ... 88s Selecting previously unselected package libltdl7:amd64. 88s Preparing to unpack .../021-libltdl7_2.5.4-2.1_amd64.deb ... 88s Unpacking libltdl7:amd64 (2.5.4-2.1) ... 88s Selecting previously unselected package libglpk40:amd64. 88s Preparing to unpack .../022-libglpk40_5.0-1build2_amd64.deb ... 88s Unpacking libglpk40:amd64 (5.0-1build2) ... 88s Selecting previously unselected package libgraphite2-3:amd64. 88s Preparing to unpack .../023-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 88s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 88s Selecting previously unselected package libharfbuzz0b:amd64. 88s Preparing to unpack .../024-libharfbuzz0b_10.2.0-1_amd64.deb ... 88s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 88s Selecting previously unselected package x11-common. 88s Preparing to unpack .../025-x11-common_1%3a7.7+23ubuntu3_all.deb ... 88s Unpacking x11-common (1:7.7+23ubuntu3) ... 88s Selecting previously unselected package libice6:amd64. 88s Preparing to unpack .../026-libice6_2%3a1.1.1-1_amd64.deb ... 88s Unpacking libice6:amd64 (2:1.1.1-1) ... 88s Selecting previously unselected package libjpeg-turbo8:amd64. 88s Preparing to unpack .../027-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 88s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 88s Selecting previously unselected package libjpeg8:amd64. 88s Preparing to unpack .../028-libjpeg8_8c-2ubuntu11_amd64.deb ... 88s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 88s Selecting previously unselected package libjs-bootstrap. 88s Preparing to unpack .../029-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 88s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 88s Selecting previously unselected package libjs-popper.js. 88s Preparing to unpack .../030-libjs-popper.js_1.16.1+ds-6_all.deb ... 88s Unpacking libjs-popper.js (1.16.1+ds-6) ... 88s Selecting previously unselected package libjs-bootstrap4. 88s Preparing to unpack .../031-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 88s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 88s Selecting previously unselected package libjs-d3. 88s Preparing to unpack .../032-libjs-d3_3.5.17-4_all.deb ... 88s Unpacking libjs-d3 (3.5.17-4) ... 88s Selecting previously unselected package libjs-es5-shim. 88s Preparing to unpack .../033-libjs-es5-shim_4.6.7-2_all.deb ... 88s Unpacking libjs-es5-shim (4.6.7-2) ... 88s Selecting previously unselected package libjs-highlight.js. 88s Preparing to unpack .../034-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 88s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 88s Selecting previously unselected package libjs-jquery. 88s Preparing to unpack .../035-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 88s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 88s Selecting previously unselected package libjs-jquery-datatables. 88s Preparing to unpack .../036-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 88s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 89s Selecting previously unselected package libjs-sifter.js. 89s Preparing to unpack .../037-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 89s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 89s Selecting previously unselected package libjs-microplugin.js. 89s Preparing to unpack .../038-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 89s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 89s Selecting previously unselected package libjs-jquery-selectize.js. 89s Preparing to unpack .../039-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 89s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 89s Selecting previously unselected package libjs-jquery-ui. 89s Preparing to unpack .../040-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 89s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 89s Selecting previously unselected package libjs-json. 89s Preparing to unpack .../041-libjs-json_0~20221030+~1.0.8-1_all.deb ... 89s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 89s Selecting previously unselected package liblapack3:amd64. 89s Preparing to unpack .../042-liblapack3_3.12.0-4_amd64.deb ... 89s Unpacking liblapack3:amd64 (3.12.0-4) ... 89s Selecting previously unselected package liblerc4:amd64. 89s Preparing to unpack .../043-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 89s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 89s Selecting previously unselected package libthai-data. 89s Preparing to unpack .../044-libthai-data_0.1.29-2build1_all.deb ... 89s Unpacking libthai-data (0.1.29-2build1) ... 89s Selecting previously unselected package libthai0:amd64. 89s Preparing to unpack .../045-libthai0_0.1.29-2build1_amd64.deb ... 89s Unpacking libthai0:amd64 (0.1.29-2build1) ... 89s Selecting previously unselected package libpango-1.0-0:amd64. 89s Preparing to unpack .../046-libpango-1.0-0_1.56.1-1_amd64.deb ... 89s Unpacking libpango-1.0-0:amd64 (1.56.1-1) ... 89s Selecting previously unselected package libpangoft2-1.0-0:amd64. 89s Preparing to unpack .../047-libpangoft2-1.0-0_1.56.1-1_amd64.deb ... 89s Unpacking libpangoft2-1.0-0:amd64 (1.56.1-1) ... 89s Selecting previously unselected package libpangocairo-1.0-0:amd64. 89s Preparing to unpack .../048-libpangocairo-1.0-0_1.56.1-1_amd64.deb ... 89s Unpacking libpangocairo-1.0-0:amd64 (1.56.1-1) ... 89s Selecting previously unselected package libpaper2:amd64. 89s Preparing to unpack .../049-libpaper2_2.2.5-0.3_amd64.deb ... 89s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 89s Selecting previously 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libwebp7:amd64 (1.5.0-0.1) ... 89s Selecting previously unselected package libtiff6:amd64. 89s Preparing to unpack .../056-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 89s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 89s Selecting previously unselected package libxft2:amd64. 89s Preparing to unpack .../057-libxft2_2.3.6-1build1_amd64.deb ... 89s Unpacking libxft2:amd64 (2.3.6-1build1) ... 89s Selecting previously unselected package libxss1:amd64. 89s Preparing to unpack .../058-libxss1_1%3a1.2.3-1build3_amd64.deb ... 89s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 89s Selecting previously unselected package libtk8.6:amd64. 89s Preparing to unpack .../059-libtk8.6_8.6.16-1_amd64.deb ... 89s Unpacking libtk8.6:amd64 (8.6.16-1) ... 89s Selecting previously unselected package libxt6t64:amd64. 89s Preparing to unpack .../060-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 89s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 89s Selecting previously unselected package zip. 89s Preparing to unpack .../061-zip_3.0-14ubuntu2_amd64.deb ... 89s Unpacking zip (3.0-14ubuntu2) ... 89s Selecting previously unselected package unzip. 90s Preparing to unpack .../062-unzip_6.0-28ubuntu6_amd64.deb ... 90s Unpacking unzip (6.0-28ubuntu6) ... 90s Selecting previously unselected package xdg-utils. 90s Preparing to unpack .../063-xdg-utils_1.2.1-0ubuntu1_all.deb ... 90s Unpacking xdg-utils (1.2.1-0ubuntu1) ... 90s Selecting previously unselected package r-base-core. 90s Preparing to unpack .../064-r-base-core_4.4.2-1build1_amd64.deb ... 90s Unpacking r-base-core (4.4.2-1build1) ... 90s Selecting previously unselected package r-cran-littler. 90s Preparing to unpack .../065-r-cran-littler_0.3.20-2_amd64.deb ... 90s Unpacking r-cran-littler (0.3.20-2) ... 90s Selecting previously unselected package littler. 90s Preparing to unpack .../066-littler_0.3.20-2_all.deb ... 90s Unpacking littler (0.3.20-2) ... 90s Selecting previously unselected package node-bootstrap-sass. 90s 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previously unselected package r-cran-sp. 90s Preparing to unpack .../073-r-cran-sp_1%3a2.1-4+dfsg-1_amd64.deb ... 90s Unpacking r-cran-sp (1:2.1-4+dfsg-1) ... 90s Selecting previously unselected package r-cran-pkgkitten. 90s Preparing to unpack .../074-r-cran-pkgkitten_0.2.4-1_all.deb ... 90s Unpacking r-cran-pkgkitten (0.2.4-1) ... 90s Selecting previously unselected package r-cran-rcpp. 90s Preparing to unpack .../075-r-cran-rcpp_1.0.14-1_amd64.deb ... 90s Unpacking r-cran-rcpp (1.0.14-1) ... 90s Selecting previously unselected package r-cran-rcpparmadillo. 90s Preparing to unpack .../076-r-cran-rcpparmadillo_14.2.2-1-1_amd64.deb ... 90s Unpacking r-cran-rcpparmadillo (14.2.2-1-1) ... 91s Selecting previously unselected package r-cran-ade4. 91s Preparing to unpack .../077-r-cran-ade4_1.7-22-1_amd64.deb ... 91s Unpacking r-cran-ade4 (1.7-22-1) ... 91s Selecting previously unselected package r-cran-cli. 91s Preparing to unpack .../078-r-cran-cli_3.6.3-1_amd64.deb ... 91s Unpacking r-cran-cli (3.6.3-1) ... 91s Selecting previously unselected package r-cran-glue. 91s Preparing to unpack .../079-r-cran-glue_1.8.0-1_amd64.deb ... 91s Unpacking r-cran-glue (1.8.0-1) ... 91s Selecting previously unselected package r-cran-rlang. 91s Preparing to unpack .../080-r-cran-rlang_1.1.5-1_amd64.deb ... 91s Unpacking r-cran-rlang (1.1.5-1) ... 91s Selecting previously unselected package r-cran-lifecycle. 91s Preparing to unpack .../081-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 91s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 91s Selecting previously unselected package r-cran-magrittr. 91s Preparing to unpack .../082-r-cran-magrittr_2.0.3-1_amd64.deb ... 91s Unpacking r-cran-magrittr (2.0.3-1) ... 91s Selecting previously unselected package r-cran-matrix. 91s Preparing to unpack .../083-r-cran-matrix_1.7-2-1_amd64.deb ... 91s Unpacking r-cran-matrix (1.7-2-1) ... 91s Selecting previously unselected package r-cran-pkgconfig. 91s Preparing to unpack .../084-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 91s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 91s Selecting previously unselected package r-cran-vctrs. 91s Preparing to unpack .../085-r-cran-vctrs_0.6.5-1_amd64.deb ... 91s Unpacking r-cran-vctrs (0.6.5-1) ... 91s Selecting previously unselected package r-cran-cpp11. 91s Preparing to unpack .../086-r-cran-cpp11_0.5.1-1_all.deb ... 91s Unpacking r-cran-cpp11 (0.5.1-1) ... 91s Selecting previously unselected package r-cran-igraph. 91s Preparing to unpack .../087-r-cran-igraph_2.1.4-1_amd64.deb ... 91s Unpacking r-cran-igraph (2.1.4-1) ... 91s Selecting previously unselected package r-cran-nlme. 91s Preparing to unpack .../088-r-cran-nlme_3.1.167-1_amd64.deb ... 91s Unpacking r-cran-nlme (3.1.167-1) ... 91s Selecting previously unselected package r-cran-digest. 91s Preparing to unpack .../089-r-cran-digest_0.6.37-1_amd64.deb ... 91s Unpacking r-cran-digest (0.6.37-1) ... 91s Selecting previously unselected package r-cran-ape. 91s Preparing to unpack .../090-r-cran-ape_5.8-1-1_amd64.deb ... 91s Unpacking r-cran-ape (5.8-1-1) ... 91s Selecting previously unselected package r-cran-later. 91s Preparing to unpack .../091-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 91s Unpacking r-cran-later (1.4.1+dfsg-1) ... 91s Selecting previously unselected package r-cran-fastmap. 91s Preparing to unpack .../092-r-cran-fastmap_1.2.0-1_amd64.deb ... 91s Unpacking r-cran-fastmap (1.2.0-1) ... 91s Selecting previously unselected package r-cran-r6. 91s Preparing to unpack .../093-r-cran-r6_2.5.1-1_all.deb ... 91s Unpacking r-cran-r6 (2.5.1-1) ... 91s Selecting previously unselected package r-cran-promises. 91s Preparing to unpack .../094-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 91s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 92s Selecting previously unselected package r-cran-httpuv. 92s Preparing to unpack .../095-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 92s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 92s Selecting previously unselected package r-cran-mime. 92s Preparing to unpack .../096-r-cran-mime_0.12-2_amd64.deb ... 92s Unpacking r-cran-mime (0.12-2) ... 92s Selecting previously unselected package r-cran-jsonlite. 92s Preparing to unpack .../097-r-cran-jsonlite_1.8.9+dfsg-1_amd64.deb ... 92s Unpacking r-cran-jsonlite (1.8.9+dfsg-1) ... 92s Selecting previously unselected package r-cran-xtable. 92s Preparing to unpack .../098-r-cran-xtable_1%3a1.8-4-2_all.deb ... 92s Unpacking r-cran-xtable (1:1.8-4-2) ... 92s Selecting previously unselected package r-cran-base64enc. 92s Preparing to unpack .../099-r-cran-base64enc_0.1-3-3_amd64.deb ... 92s Unpacking r-cran-base64enc (0.1-3-3) ... 92s Selecting previously unselected package r-cran-htmltools. 92s Preparing to unpack .../100-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 92s Unpacking r-cran-htmltools (0.5.8.1-1) ... 92s Selecting previously unselected package r-cran-fontawesome. 92s Preparing to unpack .../101-r-cran-fontawesome_0.5.3-1_all.deb ... 92s Unpacking r-cran-fontawesome (0.5.3-1) ... 92s Selecting previously unselected package r-cran-sourcetools. 92s Preparing to unpack .../102-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 92s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 92s Selecting previously unselected package r-cran-crayon. 92s Preparing to unpack .../103-r-cran-crayon_1.5.3-1_all.deb ... 92s Unpacking r-cran-crayon (1.5.3-1) ... 92s Selecting previously unselected package r-cran-withr. 92s Preparing to unpack .../104-r-cran-withr_3.0.2+dfsg-1_all.deb ... 92s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 92s Selecting previously unselected package r-cran-commonmark. 92s Preparing to unpack .../105-r-cran-commonmark_1.9.2-2_amd64.deb ... 92s Unpacking r-cran-commonmark (1.9.2-2) ... 92s Selecting previously unselected package r-cran-cachem. 92s Preparing to unpack .../106-r-cran-cachem_1.1.0-1_amd64.deb ... 92s Unpacking r-cran-cachem (1.1.0-1) ... 92s Selecting previously unselected package r-cran-jquerylib. 92s Preparing to unpack .../107-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 92s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 92s Selecting previously unselected package r-cran-memoise. 92s Preparing to unpack .../108-r-cran-memoise_2.0.1-1_all.deb ... 92s Unpacking r-cran-memoise (2.0.1-1) ... 92s Selecting previously unselected package r-cran-fs. 92s Preparing to unpack .../109-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 92s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 92s Selecting previously unselected package r-cran-rappdirs. 92s Preparing to unpack .../110-r-cran-rappdirs_0.3.3-1_amd64.deb ... 92s Unpacking r-cran-rappdirs (0.3.3-1) ... 92s Selecting previously unselected package r-cran-sass. 92s Preparing to unpack .../111-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 92s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 92s Selecting previously unselected package r-cran-bslib. 92s Preparing to unpack .../112-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 92s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 92s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 92s Preparing to unpack .../113-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 92s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 92s Selecting previously unselected package r-cran-shiny. 92s Preparing to unpack .../114-r-cran-shiny_1.9.1+dfsg-1_all.deb ... 92s Unpacking r-cran-shiny (1.9.1+dfsg-1) ... 93s Selecting previously unselected package r-cran-gtable. 93s Preparing to unpack .../115-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 93s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 93s Selecting previously unselected package r-cran-isoband. 93s Preparing to unpack .../116-r-cran-isoband_0.2.7-1_amd64.deb ... 93s Unpacking r-cran-isoband (0.2.7-1) ... 93s Selecting previously unselected package r-cran-mgcv. 93s Preparing to unpack .../117-r-cran-mgcv_1.9-1-1_amd64.deb ... 93s Unpacking r-cran-mgcv (1.9-1-1) ... 93s Selecting previously unselected package r-cran-farver. 93s Preparing to unpack .../118-r-cran-farver_2.1.2-1_amd64.deb ... 93s Unpacking r-cran-farver (2.1.2-1) ... 93s Selecting previously unselected package r-cran-labeling. 93s Preparing to unpack .../119-r-cran-labeling_0.4.3-1_all.deb ... 93s Unpacking r-cran-labeling (0.4.3-1) ... 93s Selecting previously unselected package r-cran-colorspace. 93s Preparing to unpack .../120-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 93s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 93s Selecting previously unselected package r-cran-munsell. 93s Preparing to unpack .../121-r-cran-munsell_0.5.1-1_all.deb ... 93s Unpacking r-cran-munsell (0.5.1-1) ... 93s Selecting previously unselected package r-cran-rcolorbrewer. 93s Preparing to unpack .../122-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 93s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 93s Selecting previously unselected package r-cran-viridislite. 93s Preparing to unpack .../123-r-cran-viridislite_0.4.2-2_all.deb ... 93s Unpacking r-cran-viridislite (0.4.2-2) ... 93s Selecting previously unselected package r-cran-scales. 93s Preparing to unpack .../124-r-cran-scales_1.3.0-1_all.deb ... 93s Unpacking r-cran-scales (1.3.0-1) ... 93s Selecting previously unselected package r-cran-fansi. 93s Preparing to unpack .../125-r-cran-fansi_1.0.5-1_amd64.deb ... 93s Unpacking r-cran-fansi (1.0.5-1) ... 93s Selecting previously unselected package r-cran-utf8. 93s Preparing to unpack .../126-r-cran-utf8_1.2.4-1_amd64.deb ... 93s Unpacking r-cran-utf8 (1.2.4-1) ... 93s Selecting previously unselected package r-cran-pillar. 93s Preparing to unpack .../127-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 93s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 93s Selecting previously unselected package r-cran-tibble. 93s Preparing to unpack .../128-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 93s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 93s Selecting previously unselected package r-cran-ggplot2. 93s Preparing to unpack .../129-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 93s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 93s Selecting previously unselected package r-cran-segmented. 93s Preparing to unpack .../130-r-cran-segmented_2.1-3-1_all.deb ... 93s Unpacking r-cran-segmented (2.1-3-1) ... 93s Selecting previously unselected package r-cran-seqinr. 93s Preparing to unpack .../131-r-cran-seqinr_4.2-36-1_amd64.deb ... 93s Unpacking r-cran-seqinr (4.2-36-1) ... 93s Selecting previously unselected package r-cran-boot. 93s Preparing to unpack .../132-r-cran-boot_1.3-31-1_all.deb ... 93s Unpacking r-cran-boot (1.3-31-1) ... 93s Selecting previously unselected package r-cran-plyr. 93s Preparing to unpack .../133-r-cran-plyr_1.8.9-1_amd64.deb ... 93s Unpacking r-cran-plyr (1.8.9-1) ... 93s Selecting previously unselected package r-cran-stringi. 93s Preparing to unpack .../134-r-cran-stringi_1.8.4-1build1_amd64.deb ... 93s Unpacking r-cran-stringi (1.8.4-1build1) ... 94s Selecting previously unselected package r-cran-stringr. 94s Preparing to unpack .../135-r-cran-stringr_1.5.1-1_all.deb ... 94s Unpacking r-cran-stringr (1.5.1-1) ... 94s Selecting previously unselected package r-cran-reshape2. 94s Preparing to unpack .../136-r-cran-reshape2_1.4.4-2build1_amd64.deb ... 94s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 94s Selecting previously unselected package r-cran-generics. 94s Preparing to unpack .../137-r-cran-generics_0.1.3-1_all.deb ... 94s Unpacking r-cran-generics (0.1.3-1) ... 94s Selecting previously unselected package r-cran-tidyselect. 94s Preparing to unpack .../138-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 94s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 94s Selecting previously unselected package r-cran-dplyr. 94s Preparing to unpack .../139-r-cran-dplyr_1.1.4-4_amd64.deb ... 94s Unpacking r-cran-dplyr (1.1.4-4) ... 94s Selecting previously unselected package r-cran-permute. 94s Preparing to unpack .../140-r-cran-permute_0.9-7-1_all.deb ... 94s Unpacking r-cran-permute (0.9-7-1) ... 94s Selecting previously unselected package r-cran-cluster. 94s Preparing to unpack .../141-r-cran-cluster_2.1.8-1_amd64.deb ... 94s Unpacking r-cran-cluster (2.1.8-1) ... 94s Selecting previously unselected package r-cran-vegan. 94s Preparing to unpack .../142-r-cran-vegan_2.6-10+dfsg-1_amd64.deb ... 94s Unpacking r-cran-vegan (2.6-10+dfsg-1) ... 94s Selecting previously unselected package r-cran-adegenet. 94s Preparing to unpack .../143-r-cran-adegenet_2.1.10-1_amd64.deb ... 94s Unpacking r-cran-adegenet (2.1.10-1) ... 94s Selecting previously unselected package r-cran-brio. 94s Preparing to unpack .../144-r-cran-brio_1.1.5-1_amd64.deb ... 94s Unpacking r-cran-brio (1.1.5-1) ... 94s Selecting previously unselected package r-cran-ps. 94s Preparing to unpack .../145-r-cran-ps_1.8.1-1_amd64.deb ... 94s Unpacking r-cran-ps (1.8.1-1) ... 94s Selecting previously unselected package r-cran-processx. 94s Preparing to unpack .../146-r-cran-processx_3.8.5-1_amd64.deb ... 94s Unpacking r-cran-processx (3.8.5-1) ... 94s Selecting previously unselected package r-cran-callr. 94s Preparing to unpack .../147-r-cran-callr_3.7.6-1_all.deb ... 94s Unpacking r-cran-callr (3.7.6-1) ... 94s Selecting previously unselected package r-cran-desc. 94s Preparing to unpack .../148-r-cran-desc_1.4.3-1_all.deb ... 94s Unpacking r-cran-desc (1.4.3-1) ... 94s Selecting previously unselected package r-cran-diffobj. 94s Preparing to unpack .../149-r-cran-diffobj_0.3.5-1_amd64.deb ... 94s Unpacking r-cran-diffobj (0.3.5-1) ... 94s Selecting previously unselected package r-cran-evaluate. 94s Preparing to unpack .../150-r-cran-evaluate_1.0.3-1_all.deb ... 94s Unpacking r-cran-evaluate (1.0.3-1) ... 94s Selecting previously unselected package r-cran-pkgbuild. 94s Preparing to unpack .../151-r-cran-pkgbuild_1.4.6-1_all.deb ... 94s Unpacking r-cran-pkgbuild (1.4.6-1) ... 94s Selecting previously unselected package r-cran-rprojroot. 94s Preparing to unpack .../152-r-cran-rprojroot_2.0.4-2_all.deb ... 94s Unpacking r-cran-rprojroot 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(4.0.0+ds-5ubuntu1) ... 95s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 95s Setting up libdatrie1:amd64 (0.2.13-3build1) ... 95s Setting up libjs-popper.js (1.16.1+ds-6) ... 95s Setting up libxcb-render0:amd64 (1.17.0-2) ... 95s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 95s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 95s Setting up unzip (6.0-28ubuntu6) ... 95s Setting up x11-common (1:7.7+23ubuntu3) ... 95s Setting up node-html5shiv (3.7.3+dfsg-5) ... 95s Setting up libdeflate0:amd64 (1.23-1) ... 95s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 95s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 95s Setting up libgomp1:amd64 (14.2.0-13ubuntu1) ... 95s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 95s Setting up libjs-es5-shim (4.6.7-2) ... 95s Setting up zip (3.0-14ubuntu2) ... 95s Setting up libblas3:amd64 (3.12.0-4) ... 95s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 95s Setting up libjs-d3 (3.5.17-4) ... 95s Setting up fonts-dejavu-mono (2.37-8) ... 95s Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... 95s Setting up fonts-dejavu-core (2.37-8) ... 95s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 95s Setting up libltdl7:amd64 (2.5.4-2.1) ... 95s Setting up libgfortran5:amd64 (14.2.0-13ubuntu1) ... 95s Setting up libwebp7:amd64 (1.5.0-0.1) ... 95s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 95s Setting up libsuitesparseconfig7:amd64 (1:7.8.3+dfsg-2) ... 95s Setting up libharfbuzz0b:amd64 (10.2.0-1) ... 95s Setting up libthai-data (0.1.29-2build1) ... 95s Setting up node-bootstrap-sass (3.4.3-2) ... 95s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 95s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 95s Setting up libpaper2:amd64 (2.2.5-0.3) ... 95s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 95s Setting up node-normalize.css (8.0.1-5) ... 95s Setting up fonts-font-awesome 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Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 98s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 98s Setting up r-cran-reshape2 (1.4.4-2build1) ... 98s Setting up r-cran-scales (1.3.0-1) ... 98s Setting up r-cran-memoise (2.0.1-1) ... 98s Setting up r-cran-promises (1.3.2+dfsg-1) ... 98s Setting up r-cran-vegan (2.6-10+dfsg-1) ... 98s Setting up r-cran-pkgbuild (1.4.6-1) ... 98s Setting up r-cran-dplyr (1.1.4-4) ... 98s Setting up r-cran-pkgload (1.4.0-1) ... 98s Setting up r-cran-seqinr (4.2-36-1) ... 98s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 98s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 98s Setting up r-cran-testthat (3.2.1.1-1) ... 98s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 98s Setting up r-cran-shiny (1.9.1+dfsg-1) ... 98s Setting up r-cran-adegenet (2.1.10-1) ... 98s Processing triggers for libc-bin (2.40-4ubuntu1) ... 98s Processing triggers for man-db (2.13.0-1) ... 99s Processing triggers for install-info (7.1.1-1) ... 100s autopkgtest [17:28:39]: test run-unit-test: [----------------------- 100s 100s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 100s Copyright (C) 2024 The R Foundation for Statistical Computing 100s Platform: x86_64-pc-linux-gnu 100s 100s R is free software and comes with ABSOLUTELY NO WARRANTY. 100s You are welcome to redistribute it under certain conditions. 100s Type 'license()' or 'licence()' for distribution details. 100s 100s R is a collaborative project with many contributors. 100s Type 'contributors()' for more information and 100s 'citation()' on how to cite R or R packages in publications. 100s 100s Type 'demo()' for some demos, 'help()' for on-line help, or 100s 'help.start()' for an HTML browser interface to help. 100s Type 'q()' to quit R. 100s 100s > library(testthat) 100s > suppressPackageStartupMessages(library(adegenet)) 102s > test_check("adegenet") 102s 102s Converting data from a genind to a genpop object... 102s 102s ...done. 102s 103s [ FAIL 0 | WARN 47 | SKIP 39 | PASS 13 ] 103s 103s == Skipped tests (39) ========================================================== 105s * On CRAN (39): 'test-findclust.R:4:3', 'test-prop.R:13:3', 105s 'test-seppop.R:6:3', 'test-seppop.R:14:3', 'test-seppop.R:23:3', 105s 'test-seppop.R:33:3', 'test-seppop.R:56:3', 'test-seppop.R:65:3', 105s 'test-seppop.R:75:3', 'test_compoplot.R:6:3', 'test_compoplot.R:11:3', 105s 'test_compoplot.R:16:3', 'test_compoplot.R:21:3', 'test_compoplot.R:26:3', 105s 'test_constructors.R:4:3', 'test_constructors.R:11:3', 'test_genlight.R:5:3', 105s 'test_genlight.R:18:3', 'test_genlight.R:35:3', 'test_genlight.R:42:3', 105s 'test_genlight.R:68:3', 'test_genlight.R:79:3', 'test_genlight.R:90:3', 105s 'test_genlight.R:96:3', 'test_genlight.R:104:3', 'test_hierarchy.R:4:3', 105s 'test_hierarchy.R:27:3', 'test_hierarchy.R:38:3', 'test_repool.R:7:3', 105s 'test_snapclust.R:5:5', 'test_snapclust.R:31:5', 'test_snapclust.R:65:3', 105s 'test_snapclust.R:78:3', 'test_snapclust.R:88:3', 'test_subset.R:6:3', 105s 'test_subset.R:14:3', 'test_summary.R:4:3', 'test_xval.R:15:3', 105s 'test_xval.R:26:3' 105s 105s autopkgtest [17:28:43]: test run-unit-test: -----------------------] 105s [ FAIL 0 | WARN 47 | SKIP 39 | PASS 13 ] 105s > 105s autopkgtest [17:28:44]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 105s run-unit-test PASS 105s autopkgtest [17:28:44]: test pkg-r-autopkgtest: preparing testbed 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s Starting pkgProblemResolver with broken count: 0 106s Starting 2 pkgProblemResolver with broken count: 0 106s Done 107s The following NEW packages will be installed: 107s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 107s dctrl-tools g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc 107s gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins 107s gfortran gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu 107s icu-devtools libabsl20230802 libaec0 libaom3 libarmadillo14 libarpack2t64 107s libasan8 libavif16 libblas-dev libblosc1 libbz2-dev libcc1-0 libcfitsio10t64 107s libdav1d7 libde265-0 libdeflate-dev libfreexl1 libfyba0t64 libgav1-1 107s libgcc-14-dev libgdal36 libgeos-c1t64 libgeos3.13.0 libgeotiff5 107s libgfortran-14-dev libgif7 libgpgmepp6t64 libhdf4-0-alt libhdf5-310 107s libhdf5-hl-310 libheif-plugin-aomdec libheif-plugin-libde265 libheif1 107s libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev 107s libjpeg8-dev libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack-dev 107s liblcms2-2 liblsan0 liblzma-dev libminizip1t64 libmpc3 libmysqlclient24 107s libncurses-dev libnetcdf19t64 libodbc2 libodbcinst2 libogdi4.1 libopenjp2-7 107s libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 107s libpng-dev libpoppler145 libpq5 libproj25 libqhull-r8.0 libquadmath0 107s librav1e0.7 libreadline-dev librttopo1 libsnappy1v5 libspatialite8t64 107s libstdc++-14-dev libsvtav1enc2 libsz2 libtirpc-dev libtsan2 libubsan1 107s libudunits2-0 libudunits2-data liburiparser1 libxerces-c3.2t64 libyuv0 107s mysql-common pkg-r-autopkgtest pkgconf pkgconf-bin proj-data r-base-dev 107s r-cran-class r-cran-classint r-cran-dbi r-cran-deldir r-cran-e1071 107s r-cran-interp r-cran-kernsmooth r-cran-maps r-cran-proxy r-cran-rcppeigen 107s r-cran-s2 r-cran-sf r-cran-spdata r-cran-spdep r-cran-units r-cran-wk 107s unixodbc-common zlib1g-dev 107s 0 upgraded, 127 newly installed, 0 to remove and 0 not upgraded. 107s Need to get 165 MB of archives. 107s After this operation, 543 MB of additional disk space will be used. 107s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 107s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 107s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [11.9 MB] 107s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-13ubuntu1 [1032 B] 107s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 107s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 107s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-13ubuntu1 [47.6 kB] 107s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-13ubuntu1 [29.1 kB] 107s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-13ubuntu1 [2998 kB] 107s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-13ubuntu1 [1317 kB] 107s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-13ubuntu1 [2732 kB] 107s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-13ubuntu1 [1177 kB] 107s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-13ubuntu1 [1634 kB] 107s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-13ubuntu1 [153 kB] 107s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-13ubuntu1 [2815 kB] 107s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [23.4 MB] 107s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-13ubuntu1 [534 kB] 107s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 107s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 107s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-13ubuntu1 [2508 kB] 107s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [13.3 MB] 107s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-13ubuntu1 [21.1 kB] 107s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 107s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 108s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 108s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 108s Get:27 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-data all 3.10.1+dfsg-1build2 [269 kB] 108s Get:28 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-plugins amd64 3.10.1+dfsg-1build2 [25.6 kB] 108s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-13ubuntu1 [965 kB] 108s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [12.5 MB] 108s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-13ubuntu1 [13.2 kB] 108s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1022 B] 108s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.1.0-2ubuntu1 [1172 B] 108s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 108s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libabsl20230802 amd64 20230802.1-4ubuntu2 [563 kB] 108s Get:36 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 108s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libaom3 amd64 3.11.0-1 [2761 kB] 108s Get:38 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarpack2t64 amd64 3.9.1-4 [120 kB] 108s Get:39 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarmadillo14 amd64 1:14.2.1+dfsg-1 [105 kB] 108s Get:40 http://ftpmaster.internal/ubuntu plucky/universe amd64 libdav1d7 amd64 1.5.1-1 [743 kB] 108s Get:41 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgav1-1 amd64 0.19.0-3 [697 kB] 108s Get:42 http://ftpmaster.internal/ubuntu plucky/universe amd64 librav1e0.7 amd64 0.7.1-9 [1025 kB] 108s Get:43 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2686 kB] 108s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libyuv0 amd64 0.0.1899.20250103-1 [352 kB] 108s Get:45 http://ftpmaster.internal/ubuntu plucky/universe amd64 libavif16 amd64 1.1.1-1ubuntu1 [113 kB] 108s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.0-4 [307 kB] 108s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB] 108s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB] 108s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 108s Get:50 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcfitsio10t64 amd64 4.5.0-5 [629 kB] 108s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libde265-0 amd64 1.0.15-1build4 [168 kB] 108s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 108s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfyba0t64 amd64 4.1.1-11build1 [119 kB] 108s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [22.9 kB] 108s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfreexl1 amd64 2.0.0-1build2 [41.7 kB] 108s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos3.13.0 amd64 3.13.0-1 [1017 kB] 108s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos-c1t64 amd64 3.13.0-1 [103 kB] 108s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 proj-data all 9.5.1-1 [7924 kB] 108s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 libproj25 amd64 9.5.1-1 [1499 kB] 108s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeotiff5 amd64 1.7.3-1 [63.0 kB] 108s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libgif7 amd64 5.2.2-1ubuntu1 [35.2 kB] 108s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 108s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf4-0-alt amd64 4.3.0-1 [285 kB] 108s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 108s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-aomdec amd64 1.19.5-1build1 [11.6 kB] 108s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-libde265 amd64 1.19.5-1build1 [9074 B] 108s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif1 amd64 1.19.5-1build1 [422 kB] 108s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB] 108s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlbase1t64 amd64 1.3.0-12build1 [49.9 kB] 108s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmldom1t64 amd64 1.3.0-12build1 [156 kB] 108s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlengine1t64 amd64 1.3.0-12build1 [71.4 kB] 108s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 mysql-common all 5.8+1.1.1 [6800 B] 108s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libmysqlclient24 amd64 8.4.4-0ubuntu1 [1256 kB] 108s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 108s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6ubuntu2 [531 kB] 108s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbc2 amd64 2.3.12-2ubuntu1 [186 kB] 108s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 unixodbc-common all 2.3.12-2ubuntu1 [9044 B] 108s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbcinst2 amd64 2.3.12-2ubuntu1 [34.1 kB] 108s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libogdi4.1 amd64 4.1.1+ds-5 [219 kB] 108s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu3 [217 kB] 108s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgmepp6t64 amd64 1.24.1-2ubuntu1 [126 kB] 108s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 108s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libpoppler145 amd64 25.01.0-2 [1280 kB] 108s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libpq5 amd64 17.2-1build2 [153 kB] 108s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 108s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 librttopo1 amd64 1.1.0-3build2 [191 kB] 108s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 libspatialite8t64 amd64 5.1.0-3build1 [1919 kB] 108s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build1 [1028 kB] 108s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgdal36 amd64 3.10.1+dfsg-1build2 [10.2 MB] 108s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 108s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 108s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 108s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 108s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.0-4 [6486 kB] 108s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5-2 [384 kB] 108s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu3 [214 kB] 108s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu3 [201 kB] 108s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu3 [6768 B] 108s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.42-4ubuntu3 [747 kB] 108s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 108s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 108s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.44-3 [300 kB] 108s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 108s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 libudunits2-data all 2.2.28-7build1 [19.4 kB] 108s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 libudunits2-0 amd64 2.2.28-7build1 [54.1 kB] 108s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.3-1 [189 kB] 108s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 108s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 108s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 108s Get:110 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.2-1build1 [4342 B] 108s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 108s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 108s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 108s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-e1071 amd64 1.7-16-1 [565 kB] 108s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernsmooth amd64 2.23-26-1 [94.5 kB] 108s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB] 108s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 108s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 108s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 108s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 108s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-maps amd64 3.4.2-1 [2359 kB] 108s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB] 108s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-s2 amd64 1.1.7-1 [2023 kB] 108s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-units amd64 0.8-5+dfsg-1 [275 kB] 108s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sf amd64 1.0-19+dfsg-1 [3313 kB] 108s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spdata all 2.3.1-1 [3757 kB] 108s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spdep amd64 1.3-5+dfsg-1 [2167 kB] 109s Fetched 165 MB in 2s (103 MB/s) 109s Selecting previously unselected package libisl23:amd64. 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 123170 files and directories currently installed.) 109s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 109s Unpacking libisl23:amd64 (0.27-1) ... 109s Selecting previously unselected package libmpc3:amd64. 109s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 109s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 109s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 109s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 109s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 109s Selecting previously unselected package cpp-14. 109s Preparing to unpack .../003-cpp-14_14.2.0-13ubuntu1_amd64.deb ... 109s Unpacking cpp-14 (14.2.0-13ubuntu1) ... 109s Selecting previously unselected package cpp-x86-64-linux-gnu. 109s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 109s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 109s Selecting previously unselected package cpp. 109s Preparing to unpack .../005-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 109s Unpacking cpp (4:14.1.0-2ubuntu1) ... 109s Selecting previously unselected package libcc1-0:amd64. 109s Preparing to unpack .../006-libcc1-0_14.2.0-13ubuntu1_amd64.deb ... 109s Unpacking libcc1-0:amd64 (14.2.0-13ubuntu1) ... 109s Selecting previously unselected package libitm1:amd64. 109s Preparing to unpack .../007-libitm1_14.2.0-13ubuntu1_amd64.deb ... 109s Unpacking libitm1:amd64 (14.2.0-13ubuntu1) ... 109s Selecting previously unselected package libasan8:amd64. 109s Preparing to unpack .../008-libasan8_14.2.0-13ubuntu1_amd64.deb ... 109s Unpacking libasan8:amd64 (14.2.0-13ubuntu1) ... 110s Selecting previously unselected package liblsan0:amd64. 110s Preparing to unpack .../009-liblsan0_14.2.0-13ubuntu1_amd64.deb ... 110s Unpacking liblsan0:amd64 (14.2.0-13ubuntu1) ... 110s Selecting previously unselected package libtsan2:amd64. 110s Preparing to unpack .../010-libtsan2_14.2.0-13ubuntu1_amd64.deb ... 110s Unpacking libtsan2:amd64 (14.2.0-13ubuntu1) ... 110s Selecting previously unselected package libubsan1:amd64. 110s Preparing to unpack .../011-libubsan1_14.2.0-13ubuntu1_amd64.deb ... 110s Unpacking libubsan1:amd64 (14.2.0-13ubuntu1) ... 110s Selecting previously unselected package libhwasan0:amd64. 110s Preparing to unpack .../012-libhwasan0_14.2.0-13ubuntu1_amd64.deb ... 110s Unpacking libhwasan0:amd64 (14.2.0-13ubuntu1) ... 110s Selecting previously unselected package libquadmath0:amd64. 110s Preparing to unpack .../013-libquadmath0_14.2.0-13ubuntu1_amd64.deb ... 110s Unpacking libquadmath0:amd64 (14.2.0-13ubuntu1) ... 110s Selecting previously unselected package libgcc-14-dev:amd64. 110s Preparing to unpack .../014-libgcc-14-dev_14.2.0-13ubuntu1_amd64.deb ... 110s Unpacking libgcc-14-dev:amd64 (14.2.0-13ubuntu1) ... 110s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 110s Preparing to unpack .../015-gcc-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 110s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 110s Selecting previously unselected package gcc-14. 110s Preparing to unpack .../016-gcc-14_14.2.0-13ubuntu1_amd64.deb ... 110s Unpacking gcc-14 (14.2.0-13ubuntu1) ... 110s Selecting previously unselected package gcc-x86-64-linux-gnu. 110s Preparing to unpack .../017-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 110s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 110s Selecting previously unselected package gcc. 110s Preparing to unpack .../018-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 110s Unpacking gcc (4:14.1.0-2ubuntu1) ... 110s Selecting previously unselected package libstdc++-14-dev:amd64. 110s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-13ubuntu1_amd64.deb ... 110s Unpacking libstdc++-14-dev:amd64 (14.2.0-13ubuntu1) ... 111s Selecting previously unselected package g++-14-x86-64-linux-gnu. 111s Preparing to unpack .../020-g++-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 111s Unpacking g++-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 111s Selecting previously unselected package g++-14. 111s Preparing to unpack .../021-g++-14_14.2.0-13ubuntu1_amd64.deb ... 111s Unpacking g++-14 (14.2.0-13ubuntu1) ... 111s Selecting previously unselected package g++-x86-64-linux-gnu. 111s Preparing to unpack .../022-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 111s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 111s Selecting previously unselected package g++. 111s Preparing to unpack .../023-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 111s Unpacking g++ (4:14.1.0-2ubuntu1) ... 111s Selecting previously unselected package build-essential. 111s Preparing to unpack .../024-build-essential_12.10ubuntu1_amd64.deb ... 111s Unpacking build-essential (12.10ubuntu1) ... 111s Selecting previously unselected package dctrl-tools. 111s Preparing to unpack .../025-dctrl-tools_2.24-3build3_amd64.deb ... 111s Unpacking dctrl-tools (2.24-3build3) ... 111s Selecting previously unselected package gdal-data. 111s Preparing to unpack .../026-gdal-data_3.10.1+dfsg-1build2_all.deb ... 111s Unpacking gdal-data (3.10.1+dfsg-1build2) ... 111s Selecting previously unselected package gdal-plugins:amd64. 111s Preparing to unpack .../027-gdal-plugins_3.10.1+dfsg-1build2_amd64.deb ... 111s Unpacking gdal-plugins:amd64 (3.10.1+dfsg-1build2) ... 111s Selecting previously unselected package libgfortran-14-dev:amd64. 111s Preparing to unpack .../028-libgfortran-14-dev_14.2.0-13ubuntu1_amd64.deb ... 111s Unpacking libgfortran-14-dev:amd64 (14.2.0-13ubuntu1) ... 111s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 111s Preparing to unpack .../029-gfortran-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 111s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 111s Selecting previously unselected package gfortran-14. 111s Preparing to unpack .../030-gfortran-14_14.2.0-13ubuntu1_amd64.deb ... 111s Unpacking gfortran-14 (14.2.0-13ubuntu1) ... 111s Selecting previously unselected package gfortran-x86-64-linux-gnu. 111s Preparing to unpack .../031-gfortran-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 111s Unpacking gfortran-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 111s Selecting previously unselected package gfortran. 111s Preparing to unpack .../032-gfortran_4%3a14.1.0-2ubuntu1_amd64.deb ... 111s Unpacking gfortran (4:14.1.0-2ubuntu1) ... 111s Selecting previously unselected package icu-devtools. 111s Preparing to unpack .../033-icu-devtools_76.1-1ubuntu2_amd64.deb ... 111s Unpacking icu-devtools (76.1-1ubuntu2) ... 111s Selecting previously unselected package libabsl20230802:amd64. 112s Preparing to unpack .../034-libabsl20230802_20230802.1-4ubuntu2_amd64.deb ... 112s Unpacking libabsl20230802:amd64 (20230802.1-4ubuntu2) ... 112s Selecting previously unselected package libaec0:amd64. 112s Preparing to unpack .../035-libaec0_1.1.3-1_amd64.deb ... 112s Unpacking libaec0:amd64 (1.1.3-1) ... 112s Selecting previously unselected package libaom3:amd64. 112s Preparing to unpack .../036-libaom3_3.11.0-1_amd64.deb ... 112s Unpacking libaom3:amd64 (3.11.0-1) ... 112s Selecting previously unselected package libarpack2t64:amd64. 112s Preparing to unpack .../037-libarpack2t64_3.9.1-4_amd64.deb ... 112s Unpacking libarpack2t64:amd64 (3.9.1-4) ... 112s Selecting previously unselected package libarmadillo14. 112s Preparing to unpack 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(0.0.1899.20250103-1) ... 112s Selecting previously unselected package libavif16:amd64. 112s Preparing to unpack .../044-libavif16_1.1.1-1ubuntu1_amd64.deb ... 112s Unpacking libavif16:amd64 (1.1.1-1ubuntu1) ... 112s Selecting previously unselected package libblas-dev:amd64. 112s Preparing to unpack .../045-libblas-dev_3.12.0-4_amd64.deb ... 112s Unpacking libblas-dev:amd64 (3.12.0-4) ... 112s Selecting previously unselected package libsnappy1v5:amd64. 112s Preparing to unpack .../046-libsnappy1v5_1.2.1-1_amd64.deb ... 112s Unpacking libsnappy1v5:amd64 (1.2.1-1) ... 112s Selecting previously unselected package libblosc1:amd64. 112s Preparing to unpack .../047-libblosc1_1.21.5+ds-1build1_amd64.deb ... 112s Unpacking libblosc1:amd64 (1.21.5+ds-1build1) ... 112s Selecting previously unselected package libbz2-dev:amd64. 112s Preparing to unpack .../048-libbz2-dev_1.0.8-6_amd64.deb ... 112s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 112s Selecting previously unselected package libcfitsio10t64:amd64. 112s Preparing to unpack .../049-libcfitsio10t64_4.5.0-5_amd64.deb ... 112s Unpacking libcfitsio10t64:amd64 (4.5.0-5) ... 112s Selecting previously unselected package libde265-0:amd64. 112s Preparing to unpack .../050-libde265-0_1.0.15-1build4_amd64.deb ... 112s Unpacking libde265-0:amd64 (1.0.15-1build4) ... 112s Selecting previously unselected package libdeflate-dev:amd64. 112s Preparing to unpack .../051-libdeflate-dev_1.23-1_amd64.deb ... 112s Unpacking libdeflate-dev:amd64 (1.23-1) ... 112s Selecting previously unselected package libfyba0t64:amd64. 112s Preparing to unpack .../052-libfyba0t64_4.1.1-11build1_amd64.deb ... 112s Unpacking libfyba0t64:amd64 (4.1.1-11build1) ... 112s Selecting previously unselected package libminizip1t64:amd64. 112s Preparing to unpack .../053-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 112s Unpacking libminizip1t64:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 112s Selecting previously unselected package libfreexl1:amd64. 112s Preparing to unpack .../054-libfreexl1_2.0.0-1build2_amd64.deb ... 112s Unpacking libfreexl1:amd64 (2.0.0-1build2) ... 112s Selecting previously unselected package libgeos3.13.0:amd64. 112s Preparing to unpack .../055-libgeos3.13.0_3.13.0-1_amd64.deb ... 112s Unpacking libgeos3.13.0:amd64 (3.13.0-1) ... 112s Selecting previously unselected package libgeos-c1t64:amd64. 112s Preparing to unpack .../056-libgeos-c1t64_3.13.0-1_amd64.deb ... 112s Unpacking libgeos-c1t64:amd64 (3.13.0-1) ... 113s Selecting previously unselected package proj-data. 113s Preparing to unpack .../057-proj-data_9.5.1-1_all.deb ... 113s Unpacking proj-data (9.5.1-1) ... 113s Selecting previously unselected package libproj25:amd64. 113s Preparing to unpack .../058-libproj25_9.5.1-1_amd64.deb ... 113s Unpacking libproj25:amd64 (9.5.1-1) ... 113s Selecting previously unselected package libgeotiff5:amd64. 113s Preparing to unpack .../059-libgeotiff5_1.7.3-1_amd64.deb ... 113s Unpacking libgeotiff5:amd64 (1.7.3-1) ... 113s Selecting previously unselected package libgif7:amd64. 113s Preparing to unpack .../060-libgif7_5.2.2-1ubuntu1_amd64.deb ... 113s Unpacking libgif7:amd64 (5.2.2-1ubuntu1) ... 113s Selecting previously unselected package libsz2:amd64. 113s Preparing to unpack .../061-libsz2_1.1.3-1_amd64.deb ... 113s Unpacking libsz2:amd64 (1.1.3-1) ... 113s Selecting previously unselected package libhdf4-0-alt:amd64. 113s Preparing to unpack .../062-libhdf4-0-alt_4.3.0-1_amd64.deb ... 113s Unpacking libhdf4-0-alt:amd64 (4.3.0-1) ... 113s Selecting previously unselected package libhdf5-310:amd64. 113s Preparing to unpack .../063-libhdf5-310_1.14.5+repack-3_amd64.deb ... 113s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... 113s Selecting previously unselected package libheif-plugin-aomdec:amd64. 113s Preparing to unpack .../064-libheif-plugin-aomdec_1.19.5-1build1_amd64.deb ... 113s Unpacking libheif-plugin-aomdec:amd64 (1.19.5-1build1) ... 113s Selecting previously unselected package libheif-plugin-libde265:amd64. 113s Preparing to unpack .../065-libheif-plugin-libde265_1.19.5-1build1_amd64.deb ... 113s Unpacking libheif-plugin-libde265:amd64 (1.19.5-1build1) ... 113s Selecting previously unselected package libheif1:amd64. 113s Preparing to unpack .../066-libheif1_1.19.5-1build1_amd64.deb ... 113s Unpacking libheif1:amd64 (1.19.5-1build1) ... 113s Selecting previously unselected package liburiparser1:amd64. 113s Preparing to unpack .../067-liburiparser1_0.9.8+dfsg-2_amd64.deb ... 113s Unpacking liburiparser1:amd64 (0.9.8+dfsg-2) ... 113s Selecting previously unselected package libkmlbase1t64:amd64. 113s Preparing to unpack .../068-libkmlbase1t64_1.3.0-12build1_amd64.deb ... 113s Unpacking libkmlbase1t64:amd64 (1.3.0-12build1) ... 113s Selecting previously unselected package libkmldom1t64:amd64. 113s Preparing to unpack .../069-libkmldom1t64_1.3.0-12build1_amd64.deb ... 113s Unpacking libkmldom1t64:amd64 (1.3.0-12build1) ... 113s Selecting previously unselected package libkmlengine1t64:amd64. 113s Preparing to unpack .../070-libkmlengine1t64_1.3.0-12build1_amd64.deb ... 113s Unpacking libkmlengine1t64:amd64 (1.3.0-12build1) ... 113s Selecting previously unselected package mysql-common. 113s Preparing to unpack .../071-mysql-common_5.8+1.1.1_all.deb ... 113s Unpacking mysql-common (5.8+1.1.1) ... 113s Selecting previously unselected package libmysqlclient24:amd64. 113s Preparing to unpack .../072-libmysqlclient24_8.4.4-0ubuntu1_amd64.deb ... 113s Unpacking libmysqlclient24:amd64 (8.4.4-0ubuntu1) ... 113s Selecting previously unselected package libhdf5-hl-310:amd64. 113s Preparing to unpack .../073-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ... 113s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 113s Selecting previously unselected package libnetcdf19t64:amd64. 113s Preparing to unpack .../074-libnetcdf19t64_1%3a4.9.2-6ubuntu2_amd64.deb ... 113s Unpacking libnetcdf19t64:amd64 (1:4.9.2-6ubuntu2) ... 113s Selecting previously unselected package libodbc2:amd64. 113s Preparing to unpack .../075-libodbc2_2.3.12-2ubuntu1_amd64.deb ... 113s Unpacking libodbc2:amd64 (2.3.12-2ubuntu1) ... 113s Selecting previously unselected package unixodbc-common. 113s Preparing to unpack .../076-unixodbc-common_2.3.12-2ubuntu1_all.deb ... 113s Unpacking unixodbc-common (2.3.12-2ubuntu1) ... 113s Selecting previously unselected package libodbcinst2:amd64. 113s Preparing to unpack .../077-libodbcinst2_2.3.12-2ubuntu1_amd64.deb ... 113s Unpacking libodbcinst2:amd64 (2.3.12-2ubuntu1) ... 113s Selecting previously unselected package libogdi4.1:amd64. 113s Preparing to unpack .../078-libogdi4.1_4.1.1+ds-5_amd64.deb ... 113s Unpacking libogdi4.1:amd64 (4.1.1+ds-5) ... 113s Selecting previously unselected package libopenjp2-7:amd64. 113s Preparing to unpack .../079-libopenjp2-7_2.5.0-2ubuntu3_amd64.deb ... 113s Unpacking libopenjp2-7:amd64 (2.5.0-2ubuntu3) ... 114s Selecting previously unselected package libgpgmepp6t64:amd64. 114s Preparing to unpack .../080-libgpgmepp6t64_1.24.1-2ubuntu1_amd64.deb ... 114s Unpacking libgpgmepp6t64:amd64 (1.24.1-2ubuntu1) ... 114s Selecting previously unselected package liblcms2-2:amd64. 114s Preparing to unpack .../081-liblcms2-2_2.16-2_amd64.deb ... 114s Unpacking liblcms2-2:amd64 (2.16-2) ... 114s Selecting previously unselected package libpoppler145:amd64. 114s Preparing to unpack .../082-libpoppler145_25.01.0-2_amd64.deb ... 114s Unpacking libpoppler145:amd64 (25.01.0-2) ... 114s Selecting previously unselected package libpq5:amd64. 114s Preparing to unpack .../083-libpq5_17.2-1build2_amd64.deb ... 114s Unpacking libpq5:amd64 (17.2-1build2) ... 114s Selecting previously unselected package libqhull-r8.0:amd64. 114s Preparing to unpack .../084-libqhull-r8.0_2020.2-6build1_amd64.deb ... 114s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 114s Selecting previously unselected package librttopo1:amd64. 114s Preparing to unpack .../085-librttopo1_1.1.0-3build2_amd64.deb ... 114s Unpacking librttopo1:amd64 (1.1.0-3build2) ... 114s Selecting previously unselected package libspatialite8t64:amd64. 114s Preparing to unpack .../086-libspatialite8t64_5.1.0-3build1_amd64.deb ... 114s Unpacking libspatialite8t64:amd64 (5.1.0-3build1) ... 114s Selecting previously unselected package libxerces-c3.2t64:amd64. 114s Preparing to unpack .../087-libxerces-c3.2t64_3.2.4+debian-1.3build1_amd64.deb ... 114s Unpacking libxerces-c3.2t64:amd64 (3.2.4+debian-1.3build1) ... 114s Selecting previously unselected package libgdal36:amd64. 114s Preparing to unpack .../088-libgdal36_3.10.1+dfsg-1build2_amd64.deb ... 114s Unpacking libgdal36:amd64 (3.10.1+dfsg-1build2) ... 114s Selecting previously unselected package libicu-dev:amd64. 114s Preparing to unpack .../089-libicu-dev_76.1-1ubuntu2_amd64.deb ... 114s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 114s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 114s Preparing to unpack .../090-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ... 114s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 114s Selecting previously unselected package libjpeg8-dev:amd64. 114s Preparing to unpack .../091-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 114s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 114s Selecting previously unselected package libjpeg-dev:amd64. 114s Preparing to unpack .../092-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 114s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 114s Selecting previously unselected package liblapack-dev:amd64. 114s Preparing to unpack .../093-liblapack-dev_3.12.0-4_amd64.deb ... 115s Unpacking liblapack-dev:amd64 (3.12.0-4) ... 115s Selecting previously unselected package libncurses-dev:amd64. 115s Preparing to unpack .../094-libncurses-dev_6.5-2_amd64.deb ... 115s Unpacking libncurses-dev:amd64 (6.5-2) ... 115s Selecting previously unselected package libpcre2-16-0:amd64. 115s Preparing to unpack .../095-libpcre2-16-0_10.42-4ubuntu3_amd64.deb ... 115s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu3) ... 115s Selecting previously unselected package libpcre2-32-0:amd64. 115s Preparing to unpack .../096-libpcre2-32-0_10.42-4ubuntu3_amd64.deb ... 115s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu3) ... 115s Selecting previously unselected package libpcre2-posix3:amd64. 115s Preparing to unpack .../097-libpcre2-posix3_10.42-4ubuntu3_amd64.deb ... 115s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu3) ... 115s Selecting previously unselected package libpcre2-dev:amd64. 115s Preparing to unpack .../098-libpcre2-dev_10.42-4ubuntu3_amd64.deb ... 115s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu3) ... 115s Selecting previously unselected package libpkgconf3:amd64. 115s Preparing to unpack .../099-libpkgconf3_1.8.1-4_amd64.deb ... 115s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 115s Selecting previously unselected package zlib1g-dev:amd64. 115s Preparing to unpack .../100-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 115s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 115s Selecting previously unselected package libpng-dev:amd64. 115s Preparing to unpack .../101-libpng-dev_1.6.44-3_amd64.deb ... 115s Unpacking libpng-dev:amd64 (1.6.44-3) ... 115s Selecting previously unselected package libreadline-dev:amd64. 115s Preparing to unpack .../102-libreadline-dev_8.2-6_amd64.deb ... 115s Unpacking libreadline-dev:amd64 (8.2-6) ... 115s Selecting previously unselected package libudunits2-data. 115s Preparing to unpack .../103-libudunits2-data_2.2.28-7build1_all.deb ... 115s Unpacking libudunits2-data (2.2.28-7build1) ... 115s Selecting previously unselected package libudunits2-0. 115s Preparing to unpack .../104-libudunits2-0_2.2.28-7build1_amd64.deb ... 115s Unpacking libudunits2-0 (2.2.28-7build1) ... 115s Selecting previously unselected package liblzma-dev:amd64. 115s Preparing to unpack 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previously unselected package r-cran-class. 115s Preparing to unpack .../111-r-cran-class_7.3-23-1_amd64.deb ... 115s Unpacking r-cran-class (7.3-23-1) ... 115s Selecting previously unselected package r-cran-proxy. 115s Preparing to unpack .../112-r-cran-proxy_0.4-27-1_amd64.deb ... 115s Unpacking r-cran-proxy (0.4-27-1) ... 115s Selecting previously unselected package r-cran-e1071. 115s Preparing to unpack .../113-r-cran-e1071_1.7-16-1_amd64.deb ... 115s Unpacking r-cran-e1071 (1.7-16-1) ... 115s Selecting previously unselected package r-cran-kernsmooth. 115s Preparing to unpack .../114-r-cran-kernsmooth_2.23-26-1_amd64.deb ... 115s Unpacking r-cran-kernsmooth (2.23-26-1) ... 115s Selecting previously unselected package r-cran-classint. 115s Preparing to unpack .../115-r-cran-classint_0.4-11+dfsg-1_amd64.deb ... 115s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 115s Selecting previously unselected package r-cran-dbi. 115s Preparing to unpack .../116-r-cran-dbi_1.2.3-1_all.deb ... 115s Unpacking r-cran-dbi (1.2.3-1) ... 116s Selecting previously unselected package r-cran-deldir. 116s Preparing to unpack .../117-r-cran-deldir_2.0-4-1build1_amd64.deb ... 116s Unpacking r-cran-deldir (2.0-4-1build1) ... 116s Selecting previously unselected package r-cran-rcppeigen. 116s Preparing to unpack .../118-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 116s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 116s Selecting previously unselected package r-cran-interp. 116s Preparing to unpack .../119-r-cran-interp_1.1-6-1_amd64.deb ... 116s Unpacking r-cran-interp (1.1-6-1) ... 116s Selecting previously unselected package r-cran-maps. 116s Preparing to unpack .../120-r-cran-maps_3.4.2-1_amd64.deb ... 116s Unpacking r-cran-maps (3.4.2-1) ... 116s Selecting previously unselected package r-cran-wk. 116s Preparing to unpack .../121-r-cran-wk_0.9.4-1_amd64.deb ... 116s Unpacking r-cran-wk (0.9.4-1) ... 116s Selecting previously unselected package r-cran-s2. 116s Preparing to unpack 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/usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 116s Setting up r-base-dev (4.4.2-1build1) ... 116s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 116s Setting up libheif1:amd64 (1.19.5-1build1) ... 116s Setting up libgdal36:amd64 (3.10.1+dfsg-1build2) ... 116s Setting up r-cran-sf (1.0-19+dfsg-1) ... 116s Setting up r-cran-spdep (1.3-5+dfsg-1) ... 116s Setting up libheif-plugin-aomdec:amd64 (1.19.5-1build1) ... 116s Setting up libheif-plugin-libde265:amd64 (1.19.5-1build1) ... 116s Processing triggers for libc-bin (2.40-4ubuntu1) ... 116s Processing triggers for man-db (2.13.0-1) ... 117s Processing triggers for install-info (7.1.1-1) ... 118s autopkgtest [17:28:57]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 118s autopkgtest [17:28:57]: test pkg-r-autopkgtest: [----------------------- 118s Test: Try to load the R library adegenet 118s 118s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 118s Copyright (C) 2024 The R Foundation for Statistical Computing 118s Platform: x86_64-pc-linux-gnu 118s 118s R is free software and comes with ABSOLUTELY NO WARRANTY. 118s You are welcome to redistribute it under certain conditions. 118s Type 'license()' or 'licence()' for distribution details. 118s 118s R is a collaborative project with many contributors. 118s Type 'contributors()' for more information and 118s 'citation()' on how to cite R or R packages in publications. 118s 118s Type 'demo()' for some demos, 'help()' for on-line help, or 118s 'help.start()' for an HTML browser interface to help. 118s Type 'q()' to quit R. 118s 118s > library('adegenet') 118s Loading required package: ade4 120s 120s /// adegenet 2.1.10 is loaded //////////// 120s 120s > overview: '?adegenet' 120s > tutorials/doc/questions: 'adegenetWeb()' 120s > bug reports/feature requests: adegenetIssues() 120s 120s 120s > 120s > 120s Other tests are currently unsupported! 120s They will be progressively added. 120s autopkgtest [17:28:59]: test pkg-r-autopkgtest: -----------------------] 121s pkg-r-autopkgtest PASS 121s autopkgtest [17:29:00]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 121s autopkgtest [17:29:00]: @@@@@@@@@@@@@@@@@@@@ summary 121s run-unit-test PASS 121s pkg-r-autopkgtest PASS 137s nova [W] Skipping flock for amd64 137s Creating nova instance adt-plucky-amd64-r-cran-adegenet-20250203-172658-juju-7f2275-prod-proposed-migration-environment-15-4e2fe3a1-5a86-41d7-b1d6-9537279d28ef from image adt/ubuntu-plucky-amd64-server-20250203.img (UUID 15dc8987-472a-4c3f-84bb-7526fd9e1ef2)... 137s nova [W] Timed out waiting for 1aec1298-85d2-4320-a56f-509ac1db97ef to get deleted.