0s autopkgtest [22:01:28]: starting date and time: 2025-03-15 22:01:28+0000 0s autopkgtest [22:01:28]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [22:01:28]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.c845blg3/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-tfbstools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-9.secgroup --name adt-plucky-amd64-r-bioc-tfbstools-20250315-220128-juju-7f2275-prod-proposed-migration-environment-20-9a468c0f-925c-4ca1-8ff0-cd1225b1bd43 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 955s autopkgtest [22:17:23]: testbed dpkg architecture: amd64 956s autopkgtest [22:17:24]: testbed apt version: 2.9.31ubuntu1 956s autopkgtest [22:17:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 956s autopkgtest [22:17:24]: testbed release detected to be: None 957s autopkgtest [22:17:25]: updating testbed package index (apt update) 957s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 958s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 958s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 958s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 958s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 958s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 958s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 958s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 958s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 958s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 958s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 958s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 958s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 958s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 958s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 958s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 958s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 958s Fetched 1265 kB in 1s (1387 kB/s) 959s Reading package lists... 960s Reading package lists... 960s Building dependency tree... 960s Reading state information... 960s Calculating upgrade... 961s Calculating upgrade... 961s The following package was automatically installed and is no longer required: 961s libnl-genl-3-200 961s Use 'sudo apt autoremove' to remove it. 961s The following NEW packages will be installed: 961s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 961s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 961s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 961s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 961s The following packages will be upgraded: 961s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 961s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 961s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 961s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 961s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 961s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 961s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 961s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 961s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 961s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 961s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 961s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 961s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 961s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 961s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 961s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 961s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 961s parted pci.ids pciutils pinentry-curses python-apt-common python3 961s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 961s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 961s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 961s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 961s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 961s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 961s xz-utils 961s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 961s Need to get 829 MB of archives. 961s After this operation, 325 MB of additional disk space will be used. 961s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 961s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 961s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 962s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 962s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 962s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 962s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 962s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 962s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 962s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 962s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 962s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 962s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 962s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 962s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 962s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 962s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 962s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 962s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 962s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 962s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 963s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 963s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 963s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 963s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 963s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 963s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 963s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 963s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 963s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 963s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 963s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 963s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 963s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 963s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 963s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 963s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 963s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 963s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 963s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 963s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 963s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 963s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 963s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 963s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 963s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 963s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 963s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 963s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 964s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 964s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 964s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 964s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 964s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 964s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 964s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 964s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 964s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 964s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 964s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 964s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 964s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 964s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 964s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 964s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 964s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 964s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 964s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 964s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 964s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 964s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 964s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 964s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 964s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 964s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 964s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 964s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 964s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 964s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 964s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 964s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 964s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 964s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 964s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 964s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 964s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 964s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 964s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 964s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 964s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 964s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 964s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 964s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 964s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 964s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 964s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 964s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 964s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 964s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 964s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 964s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 964s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 965s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 965s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 965s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 965s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 965s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 965s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 965s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 985s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 985s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 985s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 985s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 985s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 985s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 985s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 985s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 986s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 986s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 990s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 990s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 990s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 990s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 990s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 990s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 990s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 990s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 990s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 990s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 990s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 990s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 990s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 990s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 990s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 990s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 990s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 990s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 990s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 991s Preconfiguring packages ... 991s Fetched 829 MB in 29s (28.1 MB/s) 991s (Reading database ... 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linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 1014s Preparing to unpack .../73-linux-headers-generic_6.14.0-10.10_amd64.deb ... 1014s Unpacking linux-headers-generic (6.14.0-10.10) over (6.12.0-16.16+2) ... 1014s Selecting previously unselected package linux-perf. 1014s Preparing to unpack .../74-linux-perf_6.14.0-10.10_amd64.deb ... 1014s Unpacking linux-perf (6.14.0-10.10) ... 1014s Selecting previously unselected package linux-tools-6.14.0-10. 1014s Preparing to unpack .../75-linux-tools-6.14.0-10_6.14.0-10.10_amd64.deb ... 1014s Unpacking linux-tools-6.14.0-10 (6.14.0-10.10) ... 1014s Selecting previously unselected package linux-tools-6.14.0-10-generic. 1014s Preparing to unpack .../76-linux-tools-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 1014s Unpacking linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 1014s Preparing to unpack .../77-pinentry-curses_1.3.1-2ubuntu3_amd64.deb ... 1014s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 1014s Preparing to unpack .../78-python3-lazr.uri_1.0.6-6_all.deb ... 1014s Unpacking python3-lazr.uri (1.0.6-6) over (1.0.6-5) ... 1014s Preparing to unpack .../79-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ... 1014s Unpacking python3-rpds-py (0.21.0-2ubuntu2) over (0.21.0-2ubuntu1) ... 1014s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 1014s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 1014s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 1014s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 1014s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 1014s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 1014s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 1014s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 1014s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 1015s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 1015s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 1015s Setting up media-types (13.0.0) ... 1015s Installing new version of config file /etc/mime.types ... 1015s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 1015s Setting up ubuntu-kernel-accessories (1.549) ... 1015s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 1015s Setting up pci.ids (0.0~2025.03.09-1) ... 1015s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 1015s Setting up apt-utils (2.9.33) ... 1015s Setting up libdebuginfod-common (0.192-4) ... 1015s Setting up exfatprogs (1.2.8-1) ... 1015s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 1015s Setting up bpftool (7.6.0+6.14.0-10.10) ... 1015s Setting up libestr0:amd64 (0.1.11-2) ... 1015s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 1015s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 1015s Setting up dosfstools (4.2-1.2) ... 1015s Setting up rsyslog (8.2412.0-2ubuntu2) ... 1015s info: The user `syslog' is already a member of `adm'. 1016s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 1016s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 1016s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 1016s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 1016s Setting up systemd (257.3-1ubuntu3) ... 1016s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 1016s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 1016s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 1017s Setting up libparted2t64:amd64 (3.6-5) ... 1017s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 1017s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 1017s Setting up linux-headers-generic (6.14.0-10.10) ... 1017s Setting up libjemalloc2:amd64 (5.3.0-3) ... 1017s Setting up locales (2.41-1ubuntu1) ... 1017s Installing new version of config file /etc/locale.alias ... 1017s Generating locales (this might take a while)... 1019s en_US.UTF-8... done 1019s Generation complete. 1019s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 1019s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 1019s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 1019s Installing new version of config file /etc/apparmor.d/fusermount3 ... 1019s Installing new version of config file /etc/apparmor.d/lsusb ... 1019s Installing new version of config file /etc/apparmor.d/openvpn ... 1020s Reloading AppArmor profiles 1022s Setting up libftdi1-2:amd64 (1.5-8build1) ... 1022s Setting up libglib2.0-data (2.84.0-1) ... 1022s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 1022s Setting up libncurses6:amd64 (6.5+20250216-2) ... 1022s Setting up strace (6.13+ds-1ubuntu1) ... 1022s Setting up xz-utils (5.6.4-1) ... 1022s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 1022s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 1022s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 1022s Setting up udev (257.3-1ubuntu3) ... 1023s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 1025s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 1025s Setting up libpci3:amd64 (1:3.13.0-2) ... 1025s Setting up whiptail (0.52.24-4ubuntu2) ... 1025s Setting up python-apt-common (2.9.9build1) ... 1025s Setting up pnp.ids (0.393-3) ... 1025s Setting up libnl-3-200:amd64 (3.7.0-1) ... 1025s Setting up python3.13-minimal (3.13.2-2) ... 1026s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 1026s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 1026s Setting up libc-dev-bin (2.41-1ubuntu1) ... 1026s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 1026s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 1026s Setting up rsync (3.4.1+ds1-3) ... 1027s rsync.service is a disabled or a static unit not running, not starting it. 1027s Setting up python3.13-gdbm (3.13.2-2) ... 1027s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 1027s Setting up systemd-resolved (257.3-1ubuntu3) ... 1027s Setting up initramfs-tools-bin (0.146ubuntu1) ... 1027s Setting up ncurses-term (6.5+20250216-2) ... 1027s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 1027s Setting up libpython3.13:amd64 (3.13.2-2) ... 1027s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 1027s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 1027s Setting up systemd-sysv (257.3-1ubuntu3) ... 1027s Setting up linux-headers-virtual (6.14.0-10.10) ... 1027s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 1027s Setting up python3.13 (3.13.2-2) ... 1028s Setting up htop (3.4.0-2) ... 1028s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 1030s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 1030s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 1030s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 1030s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 1031s Setting up parted (3.6-5) ... 1031s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 1031s Setting up python3 (3.13.2-2) ... 1031s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 1031s Setting up python3-markupsafe (2.1.5-1build4) ... 1031s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 1033s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 1033s Setting up hwdata (0.393-3) ... 1033s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 1033s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 1033s No schema files found: doing nothing. 1033s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 1033s Setting up linux-perf (6.14.0-10.10) ... 1033s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 1033s Setting up pciutils (1:3.13.0-2) ... 1033s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 1033s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 1033s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 1033s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 1034s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 1034s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 1034s Setting up curl (8.12.1-3ubuntu1) ... 1034s Setting up linux-image-virtual (6.14.0-10.10) ... 1034s Setting up initramfs-tools-core (0.146ubuntu1) ... 1034s Setting up linux-tools-common (6.14.0-10.10) ... 1034s Setting up python3-systemd (235-1build6) ... 1034s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 1034s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 1034s Setting up linux-image-generic (6.14.0-10.10) ... 1034s Setting up python3-dbus (1.3.2-5build5) ... 1034s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 1034s Setting up initramfs-tools (0.146ubuntu1) ... 1034s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 1034s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 1034s update-initramfs: deferring update (trigger activated) 1034s Setting up linux-generic (6.14.0-10.10) ... 1034s Setting up ubuntu-minimal (1.549) ... 1034s Setting up python3-apt (2.9.9build1) ... 1034s Setting up python3-bcrypt (4.2.0-2.1build1) ... 1034s Setting up python3-yaml (6.0.2-1build2) ... 1034s Setting up libfwupd3:amd64 (2.0.6-4) ... 1034s Setting up python3-lazr.uri (1.0.6-6) ... 1034s Setting up binutils (2.44-3ubuntu1) ... 1034s Setting up ubuntu-standard (1.549) ... 1034s Setting up cloud-init-base (25.1-0ubuntu3) ... 1036s Setting up linux-virtual (6.14.0-10.10) ... 1036s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 1036s Setting up python3-gi (3.50.0-4build1) ... 1036s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 1036s Setting up fwupd (2.0.6-4) ... 1037s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 1037s fwupd.service is a disabled or a static unit not running, not starting it. 1037s Setting up cloud-init (25.1-0ubuntu3) ... 1037s Processing triggers for man-db (2.13.0-1) ... 1038s Processing triggers for dbus (1.16.2-1ubuntu1) ... 1038s Processing triggers for shared-mime-info (2.4-5) ... 1038s Warning: program compiled against libxml 212 using older 209 1039s Processing triggers for libc-bin (2.41-1ubuntu1) ... 1039s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 1039s /etc/kernel/postinst.d/initramfs-tools: 1039s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 1039s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 1049s /etc/kernel/postinst.d/zz-update-grub: 1049s Sourcing file `/etc/default/grub' 1049s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 1049s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 1049s Generating grub configuration file ... 1049s Found linux image: /boot/vmlinuz-6.14.0-10-generic 1049s Found initrd image: /boot/initrd.img-6.14.0-10-generic 1049s Found linux image: /boot/vmlinuz-6.12.0-16-generic 1050s Found initrd image: /boot/initrd.img-6.12.0-16-generic 1050s Found linux image: /boot/vmlinuz-6.11.0-8-generic 1050s Found initrd image: /boot/initrd.img-6.11.0-8-generic 1050s Warning: os-prober will not be executed to detect other bootable partitions. 1050s Systems on them will not be added to the GRUB boot configuration. 1050s Check GRUB_DISABLE_OS_PROBER documentation entry. 1050s Adding boot menu entry for UEFI Firmware Settings ... 1050s done 1050s Processing triggers for initramfs-tools (0.146ubuntu1) ... 1050s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 1050s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 1061s Reading package lists... 1061s Building dependency tree... 1061s Reading state information... 1062s Solving dependencies... 1062s The following packages will be REMOVED: 1062s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 1062s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 1062s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 1062s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 1062s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 1062s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 1062s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 1062s linux-tools-6.12.0-16-generic* 1062s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 1062s After this operation, 545 MB disk space will be freed. 1062s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 1062s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 1062s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 1062s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 1062s Removing libpython3.12t64:amd64 (3.12.9-1) ... 1062s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 1062s Removing libnsl2:amd64 (1.3.0-3build3) ... 1062s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 1063s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 1063s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 1065s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 1066s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 1068s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 1068s /etc/kernel/postrm.d/initramfs-tools: 1068s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 1068s /etc/kernel/postrm.d/zz-update-grub: 1068s Sourcing file `/etc/default/grub' 1068s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 1068s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 1068s Generating grub configuration file ... 1069s Found linux image: /boot/vmlinuz-6.14.0-10-generic 1069s Found initrd image: /boot/initrd.img-6.14.0-10-generic 1069s Found linux image: /boot/vmlinuz-6.12.0-16-generic 1069s Found initrd image: /boot/initrd.img-6.12.0-16-generic 1069s Warning: os-prober will not be executed to detect other bootable partitions. 1069s Systems on them will not be added to the GRUB boot configuration. 1069s Check GRUB_DISABLE_OS_PROBER documentation entry. 1069s Adding boot menu entry for UEFI Firmware Settings ... 1069s done 1069s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 1069s W: Removing the running kernel 1069s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 1069s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 1069s /etc/kernel/postrm.d/initramfs-tools: 1069s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 1069s /etc/kernel/postrm.d/zz-update-grub: 1069s Sourcing file `/etc/default/grub' 1069s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 1069s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 1069s Generating grub configuration file ... 1069s Found linux image: /boot/vmlinuz-6.14.0-10-generic 1069s Found initrd image: /boot/initrd.img-6.14.0-10-generic 1070s Warning: os-prober will not be executed to detect other bootable partitions. 1070s Systems on them will not be added to the GRUB boot configuration. 1070s Check GRUB_DISABLE_OS_PROBER documentation entry. 1070s Adding boot menu entry for UEFI Firmware Settings ... 1070s done 1070s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 1070s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 1072s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 1072s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 1072s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 1072s Processing triggers for libc-bin (2.41-1ubuntu1) ... 1072s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 1072s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 1072s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 1072s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 1072s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 1072s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 1072s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 1072s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 1072s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 1072s autopkgtest [22:19:20]: upgrading testbed (apt dist-upgrade and autopurge) 1073s Reading package lists... 1073s Building dependency tree... 1073s Reading state information... 1073s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 1073s Starting 2 pkgProblemResolver with broken count: 0 1073s Done 1074s Entering ResolveByKeep 1074s 1074s Calculating upgrade... 1074s The following packages will be upgraded: 1074s libc-bin libc-dev-bin libc6 libc6-dev locales 1074s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1074s Need to get 10.5 MB of archives. 1074s After this operation, 1024 B of additional disk space will be used. 1074s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 1075s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 1075s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 1075s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 1075s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 1075s Preconfiguring packages ... 1076s Fetched 10.5 MB in 1s (11.5 MB/s) 1076s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 1076s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 1076s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1076s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 1076s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1076s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 1076s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1076s Setting up libc6:amd64 (2.41-1ubuntu2) ... 1077s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 1077s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 1077s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1077s Setting up libc-bin (2.41-1ubuntu2) ... 1077s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 1077s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 1077s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1077s Setting up locales (2.41-1ubuntu2) ... 1078s Generating locales (this might take a while)... 1079s en_US.UTF-8... done 1079s Generation complete. 1079s Setting up libc-dev-bin (2.41-1ubuntu2) ... 1079s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 1079s Processing triggers for man-db (2.13.0-1) ... 1080s Processing triggers for systemd (257.3-1ubuntu3) ... 1081s Reading package lists... 1081s Building dependency tree... 1081s Reading state information... 1082s Starting pkgProblemResolver with broken count: 0 1082s Starting 2 pkgProblemResolver with broken count: 0 1082s Done 1082s Solving dependencies... 1082s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1082s autopkgtest [22:19:30]: rebooting testbed after setup commands that affected boot 1106s autopkgtest [22:19:54]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 1108s autopkgtest [22:19:56]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-tfbstools 1110s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-tfbstools 1.44.0+dfsg-2 (dsc) [2512 B] 1110s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-tfbstools 1.44.0+dfsg-2 (tar) [121 kB] 1110s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-tfbstools 1.44.0+dfsg-2 (diff) [4060 B] 1111s gpgv: Signature made Mon Jan 13 22:29:31 2025 UTC 1111s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 1111s gpgv: issuer "crusoe@debian.org" 1111s gpgv: Can't check signature: No public key 1111s dpkg-source: warning: cannot verify inline signature for ./r-bioc-tfbstools_1.44.0+dfsg-2.dsc: no acceptable signature found 1111s autopkgtest [22:19:59]: testing package r-bioc-tfbstools version 1.44.0+dfsg-2 1111s autopkgtest [22:19:59]: build not needed 1112s autopkgtest [22:20:00]: test pkg-r-autopkgtest: preparing testbed 1113s Reading package lists... 1113s Building dependency tree... 1113s Reading state information... 1113s Starting pkgProblemResolver with broken count: 0 1113s Starting 2 pkgProblemResolver with broken count: 0 1113s Done 1114s The following NEW packages will be installed: 1114s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 1114s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 1114s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 1114s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 1114s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 1114s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 1114s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 1114s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 1114s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 1114s libgfortran5 libgomp1 libgraphite2-3 libgsl28 libgslcblas0 libharfbuzz0b 1114s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 1114s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 1114s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 1114s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 1114s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 1114s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 1114s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 1114s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 1114s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 1114s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 1114s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 1114s libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev 1114s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 1114s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 1114s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 1114s libxss1 libxt6t64 libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv 1114s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 1114s r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase 1114s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 1114s r-bioc-biocversion r-bioc-biostrings r-bioc-bsgenome r-bioc-cner 1114s r-bioc-delayedarray r-bioc-dirichletmultinomial r-bioc-genomeinfodb 1114s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges 1114s r-bioc-go.db r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 1114s r-bioc-pwalign r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 1114s r-bioc-s4arrays r-bioc-s4vectors r-bioc-seqlogo r-bioc-sparsearray 1114s r-bioc-summarizedexperiment r-bioc-tfbstools r-bioc-ucsc.utils 1114s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 1114s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 1114s r-cran-blob r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem 1114s r-cran-callr r-cran-catools r-cran-cli r-cran-clipr r-cran-codetools 1114s r-cran-colorspace r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 1114s r-cran-dbi r-cran-desc r-cran-diffobj r-cran-digest r-cran-evaluate 1114s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-formatr 1114s r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 1114s r-cran-glue r-cran-gtable r-cran-gtools r-cran-highr r-cran-hms 1114s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-isoband r-cran-jquerylib 1114s r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 1114s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass 1114s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 1114s r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgbuild 1114s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr 1114s r-cran-png r-cran-powerlaw r-cran-pracma r-cran-praise r-cran-prettyunits 1114s r-cran-processx r-cran-progress r-cran-promises r-cran-ps r-cran-r.methodss3 1114s r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer 1114s r-cran-rcpp r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-restfulr 1114s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite 1114s r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools 1114s r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat r-cran-tfmpvalue 1114s r-cran-tibble r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 1114s r-cran-vctrs r-cran-viridislite r-cran-vroom r-cran-waldo r-cran-withr 1114s r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml t1utils tex-common 1114s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 1114s x11-common xdg-utils zip zlib1g-dev 1114s 0 upgraded, 309 newly installed, 0 to remove and 0 not upgraded. 1114s Need to get 495 MB of archives. 1114s After this operation, 1502 MB of additional disk space will be used. 1114s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 1114s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 1114s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 1115s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 1115s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 1115s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 1115s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 1115s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 1115s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 1115s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 1115s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 1115s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 1115s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 1115s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 1115s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 1115s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 1115s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 1116s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 1116s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 1116s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 1116s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 1116s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 1116s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 1116s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 1116s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 1116s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 1116s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 1116s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 1116s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 1116s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 1116s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 1116s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 1116s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 1116s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 1116s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 1117s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 1117s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 1117s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 1117s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 1117s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 1117s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 1117s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 1117s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 1117s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 1117s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 1117s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 1117s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 1117s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 1117s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 1117s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB] 1117s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 1117s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 1117s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 1117s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 1117s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 1117s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 1117s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 1117s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 1117s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 1117s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 1117s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 1117s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgslcblas0 amd64 2.8+dfsg-5 [290 kB] 1118s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgsl28 amd64 2.8+dfsg-5 [1285 kB] 1118s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 1118s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 1118s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 1118s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 1118s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 1118s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 1118s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 1118s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 1118s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 1118s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 1118s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 1118s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 1118s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 1118s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 1118s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 1118s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 1118s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 1118s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 1118s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 1118s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 1118s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 1118s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 1118s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 1118s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 1118s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB] 1118s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 1118s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 1118s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 1118s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 1118s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 1118s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 1118s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 1118s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 1118s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 1118s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 1118s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 1118s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 1119s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 1119s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 1119s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 1119s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 1119s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 1119s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 1119s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 1119s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 1119s Get:109 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 1119s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB] 1119s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 1119s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 1119s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 1119s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB] 1119s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 1119s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 1119s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB] 1119s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 1119s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 1119s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 1119s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 1119s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 1119s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 1119s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 1119s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 1119s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 1119s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 1119s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 1119s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 1119s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 1119s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 1119s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 1119s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 1121s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 1121s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 1121s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 1121s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 1121s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 1121s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 1121s Get:140 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 1122s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 1122s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 1122s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 1122s Get:144 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 1122s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 1122s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 1122s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 1122s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 1122s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 1122s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 1122s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 1122s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 1122s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB] 1122s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 1122s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 1122s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 1122s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 1122s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 1122s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 1122s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 1122s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 1122s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 1122s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 1122s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 1122s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 1122s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 1122s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 1122s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 1122s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 1122s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 1122s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 1122s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 1122s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 1122s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 1122s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 1122s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 1122s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 1122s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 1122s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 1123s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 1123s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 1123s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 1124s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 1124s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 1124s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 1124s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 1124s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB] 1124s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 1124s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 1124s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 1124s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 1124s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 1124s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 1124s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 1124s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 1124s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 1124s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 1124s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 1124s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 1124s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 1124s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 1124s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 1125s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 1125s Get:204 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 1125s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 1125s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 1125s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 1125s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 1125s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 1125s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 1126s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 1126s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 1126s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 1126s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 1126s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 1126s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 1126s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 1126s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 1126s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 1126s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 1126s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 1126s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 1126s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 1126s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 1126s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 1126s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 1126s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 1126s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB] 1126s Get:229 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 1126s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB] 1127s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB] 1128s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB] 1128s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 1133s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 1133s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 1133s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 1133s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB] 1133s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 1133s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 1133s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 1133s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 1133s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 1133s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 1134s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 1134s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 1134s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1392 kB] 1134s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 1134s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 1134s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 1134s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 1134s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 1134s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 1134s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB] 1135s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-bsgenome all 1.74.0-2 [7001 kB] 1135s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-pwalign amd64 1.2.0-2 [757 kB] 1135s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-clipr all 0.8.0-1 [53.5 kB] 1135s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 1135s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 1135s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 1135s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 1135s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 1135s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 1135s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tzdb amd64 0.4.0-2 [521 kB] 1135s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 1135s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 1135s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vroom amd64 1.6.5-1 [848 kB] 1135s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-readr amd64 2.1.5-1 [766 kB] 1135s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 1135s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 1136s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 1136s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] 1136s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 1136s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 1136s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 1136s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB] 1136s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 1136s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 1136s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 1136s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 1136s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 1136s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 1136s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 1136s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 1136s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 1136s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pracma all 2.4.4-3 [1710 kB] 1136s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-powerlaw all 1.0.0-1 [3725 kB] 1137s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-go.db all 3.20.0-2 [16.5 MB] 1137s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 1137s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.oo all 1.27.0-1 [979 kB] 1137s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.utils all 2.13.0-1 [1423 kB] 1137s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-cner amd64 1.42.0+dfsg-2 [8997 kB] 1138s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-dirichletmultinomial amd64 1.48.0-2 [1260 kB] 1138s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-seqlogo all 1.72.0+dfsg-2 [165 kB] 1138s Get:294 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-catools amd64 1.18.3-1 [209 kB] 1138s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtools amd64 3.9.5-1 [340 kB] 1138s Get:296 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tfmpvalue amd64 0.0.9-1 [55.9 kB] 1138s Get:297 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-tfbstools amd64 1.44.0+dfsg-2 [1022 kB] 1138s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 1138s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 1138s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 1138s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 1138s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 1138s Get:303 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 1138s Get:304 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 1139s Get:305 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] 1139s Get:306 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 1139s Get:307 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 1139s Get:308 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-2 [150 kB] 1139s Get:309 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 1140s Preconfiguring packages ... 1140s Fetched 495 MB in 25s (19.9 MB/s) 1140s Selecting previously unselected package libisl23:amd64. 1140s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 1140s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 1140s Unpacking libisl23:amd64 (0.27-1) ... 1140s Selecting previously unselected package libmpc3:amd64. 1140s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 1140s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 1140s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 1140s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 1140s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 1140s Selecting previously unselected package cpp-14. 1140s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 1140s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 1140s Selecting previously unselected package cpp-x86-64-linux-gnu. 1140s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 1140s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 1140s Selecting previously unselected package cpp. 1140s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 1140s Unpacking cpp (4:14.2.0-1ubuntu1) ... 1140s Selecting previously unselected package libcc1-0:amd64. 1140s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 1140s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 1140s Selecting previously unselected package libgomp1:amd64. 1140s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 1140s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 1140s Selecting previously unselected package libitm1:amd64. 1140s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 1140s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 1140s Selecting previously unselected package libasan8:amd64. 1140s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 1140s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 1140s Selecting previously unselected package liblsan0:amd64. 1140s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 1140s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 1141s Selecting previously unselected package libtsan2:amd64. 1141s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 1141s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 1141s Selecting previously unselected package libubsan1:amd64. 1141s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 1141s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 1141s Selecting previously unselected package libhwasan0:amd64. 1141s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 1141s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 1141s Selecting previously unselected package libquadmath0:amd64. 1141s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 1141s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 1141s Selecting previously unselected package libgcc-14-dev:amd64. 1141s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 1141s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 1141s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 1141s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 1141s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 1141s Selecting previously unselected package gcc-14. 1141s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 1141s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 1141s Selecting previously unselected package gcc-x86-64-linux-gnu. 1141s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 1141s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 1141s Selecting previously unselected package gcc. 1141s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 1141s Unpacking gcc (4:14.2.0-1ubuntu1) ... 1141s Selecting previously unselected package libstdc++-14-dev:amd64. 1141s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 1141s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 1141s Selecting previously unselected package g++-14-x86-64-linux-gnu. 1141s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 1141s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 1142s Selecting previously unselected package g++-14. 1142s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ... 1142s Unpacking g++-14 (14.2.0-17ubuntu3) ... 1142s Selecting previously unselected package g++-x86-64-linux-gnu. 1142s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 1142s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 1142s Selecting previously unselected package g++. 1142s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 1142s Unpacking g++ (4:14.2.0-1ubuntu1) ... 1142s Selecting previously unselected package build-essential. 1142s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 1142s Unpacking build-essential (12.10ubuntu1) ... 1142s Selecting previously unselected package dctrl-tools. 1142s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 1142s Unpacking dctrl-tools (2.24-3build3) ... 1142s Selecting previously unselected package fonts-dejavu-mono. 1142s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 1142s Unpacking fonts-dejavu-mono (2.37-8) ... 1142s Selecting previously unselected package fonts-dejavu-core. 1142s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 1142s Unpacking fonts-dejavu-core (2.37-8) ... 1142s Selecting previously unselected package fontconfig-config. 1142s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 1142s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 1142s Selecting previously unselected package libfontconfig1:amd64. 1142s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 1142s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 1142s Selecting previously unselected package fontconfig. 1142s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 1142s Unpacking fontconfig (2.15.0-2ubuntu1) ... 1142s Selecting previously unselected package fonts-font-awesome. 1142s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 1142s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 1142s Selecting previously unselected package fonts-glyphicons-halflings. 1142s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 1142s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 1142s Selecting previously unselected package fonts-lmodern. 1142s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ... 1142s Unpacking fonts-lmodern (2.005-1) ... 1142s Selecting previously unselected package fonts-mathjax. 1142s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 1142s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 1143s Selecting previously unselected package libgfortran5:amd64. 1143s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 1143s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 1143s Selecting previously unselected package libgfortran-14-dev:amd64. 1143s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 1143s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 1143s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 1143s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 1143s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 1143s Selecting previously unselected package gfortran-14. 1143s Preparing to unpack .../039-gfortran-14_14.2.0-17ubuntu3_amd64.deb ... 1143s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 1143s Selecting previously unselected package gfortran-x86-64-linux-gnu. 1143s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 1143s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 1143s Selecting previously unselected package gfortran. 1143s Preparing to unpack .../041-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 1143s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 1143s Selecting previously unselected package icu-devtools. 1143s Preparing to unpack .../042-icu-devtools_76.1-1ubuntu2_amd64.deb ... 1143s Unpacking icu-devtools (76.1-1ubuntu2) ... 1143s Selecting previously unselected package javascript-common. 1143s Preparing to unpack .../043-javascript-common_12_all.deb ... 1143s Unpacking javascript-common (12) ... 1143s Selecting previously unselected package libio-string-perl. 1143s Preparing to unpack .../044-libio-string-perl_1.08-4_all.deb ... 1143s Unpacking libio-string-perl (1.08-4) ... 1143s Selecting previously unselected package liblatex-tounicode-perl. 1143s Preparing to unpack .../045-liblatex-tounicode-perl_0.55-1_all.deb ... 1143s Unpacking liblatex-tounicode-perl (0.55-1) ... 1143s Selecting previously unselected package libbibtex-parser-perl. 1143s Preparing to unpack .../046-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 1143s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 1143s Selecting previously unselected package libblas3:amd64. 1143s Preparing to unpack .../047-libblas3_3.12.1-2_amd64.deb ... 1143s Unpacking libblas3:amd64 (3.12.1-2) ... 1143s Selecting previously unselected package libblas-dev:amd64. 1143s Preparing to unpack .../048-libblas-dev_3.12.1-2_amd64.deb ... 1143s Unpacking libblas-dev:amd64 (3.12.1-2) ... 1143s Selecting previously unselected package libboost1.83-dev:amd64. 1143s Preparing to unpack .../049-libboost1.83-dev_1.83.0-4.1ubuntu2_amd64.deb ... 1143s Unpacking libboost1.83-dev:amd64 (1.83.0-4.1ubuntu2) ... 1145s Selecting previously unselected package libboost-dev:amd64. 1145s Preparing to unpack .../050-libboost-dev_1.83.0.2ubuntu1_amd64.deb ... 1145s Unpacking libboost-dev:amd64 (1.83.0.2ubuntu1) ... 1145s Selecting previously unselected package libbz2-dev:amd64. 1145s Preparing to unpack .../051-libbz2-dev_1.0.8-6_amd64.deb ... 1145s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 1145s Selecting previously unselected package libpixman-1-0:amd64. 1145s Preparing to unpack .../052-libpixman-1-0_0.44.0-3_amd64.deb ... 1145s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 1145s Selecting previously unselected package libxcb-render0:amd64. 1145s Preparing to unpack .../053-libxcb-render0_1.17.0-2_amd64.deb ... 1145s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 1145s Selecting previously unselected package libxcb-shm0:amd64. 1145s Preparing to unpack .../054-libxcb-shm0_1.17.0-2_amd64.deb ... 1145s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 1145s Selecting previously unselected package libxrender1:amd64. 1145s Preparing to unpack .../055-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 1145s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 1146s Selecting previously unselected package libcairo2:amd64. 1146s Preparing to unpack .../056-libcairo2_1.18.2-2_amd64.deb ... 1146s Unpacking libcairo2:amd64 (1.18.2-2) ... 1146s Selecting previously unselected package libdatrie1:amd64. 1146s Preparing to unpack .../057-libdatrie1_0.2.13-3build1_amd64.deb ... 1146s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 1146s Selecting previously unselected package libdeflate0:amd64. 1146s Preparing to unpack .../058-libdeflate0_1.23-1_amd64.deb ... 1146s Unpacking libdeflate0:amd64 (1.23-1) ... 1146s Selecting previously unselected package libdeflate-dev:amd64. 1146s Preparing to unpack .../059-libdeflate-dev_1.23-1_amd64.deb ... 1146s Unpacking libdeflate-dev:amd64 (1.23-1) ... 1146s Selecting previously unselected package libgraphite2-3:amd64. 1146s Preparing to unpack .../060-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 1146s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 1146s Selecting previously unselected package libgslcblas0:amd64. 1146s Preparing to unpack .../061-libgslcblas0_2.8+dfsg-5_amd64.deb ... 1146s Unpacking libgslcblas0:amd64 (2.8+dfsg-5) ... 1146s Selecting previously unselected package libgsl28:amd64. 1146s Preparing to unpack .../062-libgsl28_2.8+dfsg-5_amd64.deb ... 1146s 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package unzip. 1149s Preparing to unpack .../130-unzip_6.0-28ubuntu6_amd64.deb ... 1149s Unpacking unzip (6.0-28ubuntu6) ... 1149s Selecting previously unselected package xdg-utils. 1149s Preparing to unpack .../131-xdg-utils_1.2.1-2ubuntu1_all.deb ... 1149s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 1149s Selecting previously unselected package r-base-core. 1149s Preparing to unpack .../132-r-base-core_4.4.3-1_amd64.deb ... 1149s Unpacking r-base-core (4.4.3-1) ... 1149s Selecting previously unselected package r-cran-littler. 1149s Preparing to unpack .../133-r-cran-littler_0.3.20-2_amd64.deb ... 1149s Unpacking r-cran-littler (0.3.20-2) ... 1149s Selecting previously unselected package littler. 1149s Preparing to unpack .../134-littler_0.3.20-2_all.deb ... 1149s Unpacking littler (0.3.20-2) ... 1149s Selecting previously unselected package node-bootstrap-sass. 1149s Preparing to unpack .../135-node-bootstrap-sass_3.4.3-2_all.deb ... 1149s Unpacking node-bootstrap-sass (3.4.3-2) ... 1149s Selecting previously unselected package node-html5shiv. 1149s Preparing to unpack .../136-node-html5shiv_3.7.3+dfsg-5_all.deb ... 1149s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 1149s Selecting previously unselected package node-normalize.css. 1149s Preparing to unpack .../137-node-normalize.css_8.0.1-5_all.deb ... 1149s Unpacking node-normalize.css (8.0.1-5) ... 1149s Selecting previously unselected package pandoc-data. 1149s Preparing to unpack .../138-pandoc-data_3.1.11.1-3build1_all.deb ... 1149s Unpacking pandoc-data (3.1.11.1-3build1) ... 1149s Selecting previously unselected package pandoc. 1149s Preparing to unpack .../139-pandoc_3.1.11.1+ds-2_amd64.deb ... 1149s Unpacking pandoc (3.1.11.1+ds-2) ... 1150s Selecting previously unselected package liblzma-dev:amd64. 1150s Preparing to unpack .../140-liblzma-dev_5.6.4-1_amd64.deb ... 1150s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 1150s Selecting previously unselected package pkgconf-bin. 1150s Preparing to unpack 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... 1150s Selecting previously unselected package r-bioc-biobase. 1150s Preparing to unpack .../147-r-bioc-biobase_2.66.0-2_amd64.deb ... 1150s Unpacking r-bioc-biobase (2.66.0-2) ... 1150s Selecting previously unselected package r-bioc-s4vectors. 1150s Preparing to unpack .../148-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 1150s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 1150s Selecting previously unselected package r-bioc-iranges. 1150s Preparing to unpack .../149-r-bioc-iranges_2.40.1-2_amd64.deb ... 1150s Unpacking r-bioc-iranges (2.40.1-2) ... 1150s Selecting previously unselected package r-cran-dbi. 1150s Preparing to unpack .../150-r-cran-dbi_1.2.3-1_all.deb ... 1150s Unpacking r-cran-dbi (1.2.3-1) ... 1151s Selecting previously unselected package r-cran-bit. 1151s Preparing to unpack .../151-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 1151s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 1151s Selecting previously unselected package r-cran-bit64. 1151s Preparing to unpack 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previously unselected package r-cran-blob. 1151s Preparing to unpack .../158-r-cran-blob_1.2.4-1_all.deb ... 1151s Unpacking r-cran-blob (1.2.4-1) ... 1151s Selecting previously unselected package r-cran-fastmap. 1151s Preparing to unpack .../159-r-cran-fastmap_1.2.0-1_amd64.deb ... 1151s Unpacking r-cran-fastmap (1.2.0-1) ... 1151s Selecting previously unselected package r-cran-cachem. 1151s Preparing to unpack .../160-r-cran-cachem_1.1.0-1_amd64.deb ... 1151s Unpacking r-cran-cachem (1.1.0-1) ... 1151s Selecting previously unselected package r-cran-memoise. 1151s Preparing to unpack .../161-r-cran-memoise_2.0.1-1_all.deb ... 1151s Unpacking r-cran-memoise (2.0.1-1) ... 1151s Selecting previously unselected package r-cran-pkgconfig. 1151s Preparing to unpack .../162-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 1151s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 1151s Selecting previously unselected package r-cran-plogr. 1151s Preparing to unpack .../163-r-cran-plogr_0.2.0-3build1_all.deb ... 1151s Unpacking r-cran-plogr (0.2.0-3build1) ... 1151s Selecting previously unselected package r-cran-cpp11. 1151s Preparing to unpack .../164-r-cran-cpp11_0.5.2-1_all.deb ... 1151s Unpacking r-cran-cpp11 (0.5.2-1) ... 1151s Selecting previously unselected package r-cran-rsqlite. 1151s Preparing to unpack .../165-r-cran-rsqlite_2.3.9-1_amd64.deb ... 1151s Unpacking r-cran-rsqlite (2.3.9-1) ... 1151s Selecting previously unselected package r-cran-curl. 1151s Preparing to unpack .../166-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 1151s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 1151s Selecting previously unselected package r-cran-jsonlite. 1151s Preparing to unpack .../167-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 1151s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 1151s Selecting previously unselected package r-cran-mime. 1151s Preparing to unpack .../168-r-cran-mime_0.12-2_amd64.deb ... 1151s Unpacking r-cran-mime (0.12-2) ... 1151s Selecting previously unselected package r-cran-sys. 1151s Preparing to unpack .../169-r-cran-sys_3.4.3-1_amd64.deb ... 1151s Unpacking r-cran-sys (3.4.3-1) ... 1151s Selecting previously unselected package r-cran-askpass. 1151s Preparing to unpack .../170-r-cran-askpass_1.2.1-1_amd64.deb ... 1151s Unpacking r-cran-askpass (1.2.1-1) ... 1151s Selecting previously unselected package r-cran-openssl. 1151s Preparing to unpack .../171-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 1151s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 1151s Selecting previously unselected package r-cran-r6. 1152s Preparing to unpack .../172-r-cran-r6_2.6.1-1_all.deb ... 1152s Unpacking r-cran-r6 (2.6.1-1) ... 1152s Selecting previously unselected package r-cran-httr. 1152s Preparing to unpack .../173-r-cran-httr_1.4.7+dfsg-1_all.deb ... 1152s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 1152s Selecting previously unselected package r-cran-png. 1152s Preparing to unpack .../174-r-cran-png_0.1-8-1build2_amd64.deb ... 1152s Unpacking r-cran-png (0.1-8-1build2) ... 1152s Selecting previously unselected package r-bioc-zlibbioc. 1152s Preparing to unpack .../175-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 1152s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 1152s Selecting previously unselected package r-bioc-xvector. 1152s Preparing to unpack .../176-r-bioc-xvector_0.46.0-2_amd64.deb ... 1152s Unpacking r-bioc-xvector (0.46.0-2) ... 1152s Selecting previously unselected package r-bioc-ucsc.utils. 1152s Preparing to unpack .../177-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 1152s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 1152s Selecting previously unselected package r-bioc-genomeinfodbdata. 1152s Preparing to unpack .../178-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 1152s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 1152s Selecting previously unselected package r-bioc-genomeinfodb. 1152s Preparing to unpack .../179-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 1152s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 1152s Selecting previously unselected package r-cran-crayon. 1152s Preparing to unpack .../180-r-cran-crayon_1.5.3-1_all.deb ... 1152s Unpacking r-cran-crayon (1.5.3-1) ... 1152s Selecting previously unselected package r-bioc-biostrings. 1152s Preparing to unpack .../181-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 1152s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 1152s Selecting previously unselected package r-bioc-keggrest. 1152s Preparing to unpack .../182-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 1152s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 1152s Selecting previously unselected package r-bioc-annotationdbi. 1152s Preparing to unpack .../183-r-bioc-annotationdbi_1.68.0-2_all.deb ... 1152s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 1152s Selecting previously unselected package r-cran-xml. 1152s Preparing to unpack .../184-r-cran-xml_3.99-0.18-1_amd64.deb ... 1152s Unpacking r-cran-xml (3.99-0.18-1) ... 1152s Selecting previously unselected package r-cran-xtable. 1152s Preparing to unpack .../185-r-cran-xtable_1%3a1.8-4-2_all.deb ... 1152s Unpacking r-cran-xtable (1:1.8-4-2) ... 1152s Selecting previously unselected package r-bioc-annotate. 1152s Preparing to unpack .../186-r-bioc-annotate_1.84.0+dfsg-2_all.deb ... 1152s Unpacking r-bioc-annotate (1.84.0+dfsg-2) ... 1152s Selecting previously unselected package r-bioc-biocio. 1152s Preparing to unpack .../187-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 1152s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 1152s Selecting previously unselected package r-cran-formatr. 1152s Preparing to unpack .../188-r-cran-formatr_1.14-2_all.deb ... 1152s Unpacking r-cran-formatr (1.14-2) ... 1153s Selecting previously unselected package r-cran-lambda.r. 1153s Preparing to unpack .../189-r-cran-lambda.r_1.2.4-2build1_all.deb ... 1153s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 1153s Selecting previously unselected package r-cran-futile.options. 1153s Preparing to unpack .../190-r-cran-futile.options_1.0.1-3build1_all.deb ... 1153s Unpacking r-cran-futile.options (1.0.1-3build1) ... 1153s Selecting previously unselected package r-cran-futile.logger. 1153s Preparing to unpack .../191-r-cran-futile.logger_1.4.3-4build1_all.deb ... 1153s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 1153s Selecting previously unselected package r-cran-snow. 1153s Preparing to unpack .../192-r-cran-snow_1%3a0.4.4-2_all.deb ... 1153s Unpacking r-cran-snow (1:0.4.4-2) ... 1153s Selecting previously unselected package r-cran-codetools. 1153s Preparing to unpack .../193-r-cran-codetools_0.2-20-1_all.deb ... 1153s Unpacking r-cran-codetools (0.2-20-1) ... 1153s Selecting previously unselected package r-cran-bh. 1153s Preparing to unpack .../194-r-cran-bh_1.84.0-1_all.deb ... 1153s Unpacking r-cran-bh (1.84.0-1) ... 1153s Selecting previously unselected package r-bioc-biocparallel. 1153s Preparing to unpack .../195-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 1153s Unpacking r-bioc-biocparallel (1.40.0-2) ... 1153s Selecting previously unselected package r-cran-base64enc. 1153s Preparing to unpack .../196-r-cran-base64enc_0.1-3-3_amd64.deb ... 1153s Unpacking r-cran-base64enc (0.1-3-3) ... 1153s Selecting previously unselected package r-cran-digest. 1153s Preparing to unpack .../197-r-cran-digest_0.6.37-1_amd64.deb ... 1153s Unpacking r-cran-digest (0.6.37-1) ... 1153s Selecting previously unselected package r-cran-htmltools. 1153s Preparing to unpack .../198-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 1153s Unpacking r-cran-htmltools (0.5.8.1-1) ... 1153s Selecting previously unselected package r-cran-evaluate. 1153s Preparing to unpack .../199-r-cran-evaluate_1.0.3-1_all.deb ... 1153s Unpacking r-cran-evaluate (1.0.3-1) ... 1153s Selecting previously unselected package r-cran-xfun. 1153s Preparing to unpack .../200-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 1153s Unpacking r-cran-xfun (0.51+dfsg-1) ... 1153s Selecting previously unselected package r-cran-highr. 1153s Preparing to unpack .../201-r-cran-highr_0.11+dfsg-1_all.deb ... 1153s Unpacking r-cran-highr (0.11+dfsg-1) ... 1153s Selecting previously unselected package r-cran-yaml. 1153s Preparing to unpack .../202-r-cran-yaml_2.3.10-1_amd64.deb ... 1153s Unpacking r-cran-yaml (2.3.10-1) ... 1153s Selecting previously unselected package libjs-mathjax. 1153s Preparing to unpack .../203-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 1153s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 1154s Selecting previously unselected package r-cran-knitr. 1154s Preparing to unpack .../204-r-cran-knitr_1.49+dfsg-1_all.deb ... 1154s Unpacking r-cran-knitr (1.49+dfsg-1) ... 1154s Selecting previously unselected package r-cran-jquerylib. 1154s Preparing to unpack .../205-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 1154s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 1154s Selecting previously unselected package r-cran-fs. 1154s Preparing to unpack .../206-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 1154s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 1154s Selecting previously unselected package r-cran-rappdirs. 1154s Preparing to unpack .../207-r-cran-rappdirs_0.3.3-1_amd64.deb ... 1154s Unpacking r-cran-rappdirs (0.3.3-1) ... 1154s Selecting previously unselected package r-cran-sass. 1154s Preparing to unpack .../208-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 1154s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 1154s Selecting previously unselected package r-cran-bslib. 1154s Preparing to unpack .../209-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 1154s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 1154s Selecting previously unselected package r-cran-fontawesome. 1154s Preparing to unpack .../210-r-cran-fontawesome_0.5.3-1_all.deb ... 1154s Unpacking r-cran-fontawesome (0.5.3-1) ... 1154s Selecting previously unselected package r-cran-tinytex. 1154s Preparing to unpack .../211-r-cran-tinytex_0.56-1_all.deb ... 1154s Unpacking r-cran-tinytex (0.56-1) ... 1154s Selecting previously unselected package libjs-modernizr. 1154s Preparing to unpack .../212-libjs-modernizr_3.13.0-0.1_all.deb ... 1154s Unpacking libjs-modernizr (3.13.0-0.1) ... 1154s Selecting previously unselected package r-cran-pkgkitten. 1154s Preparing to unpack .../213-r-cran-pkgkitten_0.2.4-1_all.deb ... 1154s Unpacking r-cran-pkgkitten (0.2.4-1) ... 1154s Selecting previously unselected package r-cran-rcpp. 1154s Preparing to unpack .../214-r-cran-rcpp_1.0.14-1_amd64.deb ... 1154s Unpacking r-cran-rcpp (1.0.14-1) ... 1154s Selecting previously unselected package r-cran-later. 1154s Preparing to unpack .../215-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 1154s Unpacking r-cran-later (1.4.1+dfsg-1) ... 1154s Selecting previously unselected package r-cran-magrittr. 1154s Preparing to unpack .../216-r-cran-magrittr_2.0.3-1_amd64.deb ... 1154s Unpacking r-cran-magrittr (2.0.3-1) ... 1155s Selecting previously unselected package r-cran-promises. 1155s Preparing to unpack .../217-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 1155s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 1155s Selecting previously unselected package r-cran-httpuv. 1155s Preparing to unpack .../218-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 1155s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 1155s Selecting previously unselected package r-cran-sourcetools. 1155s Preparing to unpack .../219-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 1155s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 1155s Selecting previously unselected package r-cran-withr. 1155s Preparing to unpack .../220-r-cran-withr_3.0.2+dfsg-1_all.deb ... 1155s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 1155s Selecting previously unselected package r-cran-commonmark. 1155s Preparing to unpack .../221-r-cran-commonmark_1.9.2-2_amd64.deb ... 1155s Unpacking r-cran-commonmark (1.9.2-2) ... 1155s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 1155s Preparing to unpack .../222-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 1155s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 1155s Selecting previously unselected package r-cran-shiny. 1155s Preparing to unpack .../223-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 1155s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 1155s Selecting previously unselected package r-cran-rmarkdown. 1155s Preparing to unpack .../224-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 1155s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 1155s Selecting previously unselected package r-cran-bookdown. 1155s Preparing to unpack .../225-r-cran-bookdown_0.42+dfsg-1_all.deb ... 1155s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 1155s Selecting previously unselected package r-cran-biocmanager. 1155s Preparing to unpack .../226-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 1155s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 1155s Selecting previously unselected package tex-common. 1155s Preparing to unpack .../227-tex-common_6.19_all.deb ... 1155s Unpacking tex-common (6.19) ... 1155s Selecting previously unselected package t1utils. 1155s Preparing to unpack .../228-t1utils_1.41-4build3_amd64.deb ... 1155s Unpacking t1utils (1.41-4build3) ... 1155s Selecting previously unselected package texlive-binaries. 1155s Preparing to unpack .../229-texlive-binaries_2024.20240313.70630+ds-6_amd64.deb ... 1155s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ... 1155s Selecting previously unselected package texlive-base. 1155s Preparing to unpack .../230-texlive-base_2024.20250114-1_all.deb ... 1155s Unpacking texlive-base (2024.20250114-1) ... 1156s Selecting previously unselected package texlive-latex-base. 1156s Preparing to unpack .../231-texlive-latex-base_2024.20250114-1_all.deb ... 1156s Unpacking texlive-latex-base (2024.20250114-1) ... 1157s Selecting previously unselected package texlive-bibtex-extra. 1157s Preparing to unpack .../232-texlive-bibtex-extra_2024.20250114-1_all.deb ... 1157s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 1159s Selecting previously unselected package r-bioc-biocversion. 1159s Preparing to unpack .../233-r-bioc-biocversion_3.20.0-2_all.deb ... 1159s Unpacking r-bioc-biocversion (3.20.0-2) ... 1159s Selecting previously unselected package r-bioc-biocstyle. 1159s Preparing to unpack .../234-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 1159s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 1159s Selecting previously unselected package r-bioc-genomicranges. 1159s Preparing to unpack .../235-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 1159s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 1159s Selecting previously unselected package r-cran-bitops. 1159s Preparing to unpack .../236-r-cran-bitops_1.0-9-1_amd64.deb ... 1159s Unpacking r-cran-bitops (1.0-9-1) ... 1159s Selecting previously unselected package r-bioc-rhtslib. 1159s Preparing to unpack .../237-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ... 1159s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 1159s Selecting previously unselected package r-bioc-rsamtools. 1159s Preparing to unpack .../238-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ... 1159s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 1159s Selecting previously unselected package r-cran-matrixstats. 1159s Preparing to unpack .../239-r-cran-matrixstats_1.5.0-1_amd64.deb ... 1159s Unpacking r-cran-matrixstats (1.5.0-1) ... 1160s Selecting previously unselected package r-bioc-matrixgenerics. 1160s Preparing to unpack .../240-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 1160s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 1160s Selecting previously unselected package r-cran-lattice. 1160s Preparing to unpack .../241-r-cran-lattice_0.22-6-1_amd64.deb ... 1160s Unpacking r-cran-lattice (0.22-6-1) ... 1160s Selecting previously unselected package r-cran-matrix. 1160s Preparing to unpack .../242-r-cran-matrix_1.7-3-1_amd64.deb ... 1160s Unpacking r-cran-matrix (1.7-3-1) ... 1160s Selecting previously unselected package r-cran-abind. 1160s Preparing to unpack .../243-r-cran-abind_1.4-8-1_all.deb ... 1160s Unpacking r-cran-abind (1.4-8-1) ... 1160s Selecting previously unselected package r-bioc-s4arrays. 1160s Preparing to unpack .../244-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 1160s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 1160s Selecting previously unselected package r-bioc-sparsearray. 1160s Preparing to unpack .../245-r-bioc-sparsearray_1.6.2+dfsg-1_amd64.deb ... 1160s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 1160s Selecting previously unselected package r-bioc-delayedarray. 1160s Preparing to unpack .../246-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 1160s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 1160s Selecting previously unselected package r-bioc-summarizedexperiment. 1160s Preparing to unpack .../247-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 1160s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 1160s Selecting previously unselected package r-bioc-genomicalignments. 1160s Preparing to unpack .../248-r-bioc-genomicalignments_1.42.0-2_amd64.deb ... 1160s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 1160s Selecting previously unselected package r-cran-rcurl. 1160s Preparing to unpack .../249-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 1160s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 1160s Selecting previously unselected package r-cran-rjson. 1160s Preparing to unpack .../250-r-cran-rjson_0.2.23-1_amd64.deb ... 1160s Unpacking r-cran-rjson (0.2.23-1) ... 1160s Selecting previously unselected package r-cran-restfulr. 1160s Preparing to unpack .../251-r-cran-restfulr_0.0.15-1_amd64.deb ... 1160s Unpacking r-cran-restfulr (0.0.15-1) ... 1160s Selecting previously unselected package r-bioc-rtracklayer. 1160s Preparing to unpack .../252-r-bioc-rtracklayer_1.66.0-2_amd64.deb ... 1160s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 1160s Selecting previously unselected package r-bioc-bsgenome. 1160s Preparing to unpack .../253-r-bioc-bsgenome_1.74.0-2_all.deb ... 1160s Unpacking r-bioc-bsgenome (1.74.0-2) ... 1160s Selecting previously unselected package r-bioc-pwalign. 1160s Preparing to unpack .../254-r-bioc-pwalign_1.2.0-2_amd64.deb ... 1160s Unpacking r-bioc-pwalign (1.2.0-2) ... 1160s Selecting previously unselected package r-cran-clipr. 1160s Preparing to unpack .../255-r-cran-clipr_0.8.0-1_all.deb ... 1160s Unpacking r-cran-clipr (0.8.0-1) ... 1160s Selecting previously unselected package r-cran-hms. 1160s Preparing to unpack .../256-r-cran-hms_1.1.3-1_all.deb ... 1160s Unpacking r-cran-hms (1.1.3-1) ... 1160s Selecting previously unselected package r-cran-fansi. 1160s Preparing to unpack .../257-r-cran-fansi_1.0.5-1_amd64.deb ... 1160s Unpacking r-cran-fansi (1.0.5-1) ... 1160s Selecting previously unselected package r-cran-utf8. 1160s Preparing to unpack .../258-r-cran-utf8_1.2.4-1_amd64.deb ... 1160s Unpacking r-cran-utf8 (1.2.4-1) ... 1160s Selecting previously unselected package r-cran-pillar. 1160s Preparing to unpack .../259-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 1160s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 1160s Selecting previously unselected package r-cran-tibble. 1160s Preparing to unpack .../260-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 1160s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 1160s Selecting previously unselected package r-cran-tidyselect. 1160s Preparing to unpack .../261-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 1160s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 1160s Selecting previously unselected package r-cran-tzdb. 1160s Preparing to unpack .../262-r-cran-tzdb_0.4.0-2_amd64.deb ... 1160s Unpacking r-cran-tzdb (0.4.0-2) ... 1160s Selecting previously unselected package r-cran-prettyunits. 1160s Preparing to unpack .../263-r-cran-prettyunits_1.2.0-1_all.deb ... 1160s Unpacking r-cran-prettyunits (1.2.0-1) ... 1160s Selecting previously unselected package r-cran-progress. 1160s Preparing to unpack .../264-r-cran-progress_1.2.3-1_all.deb ... 1160s Unpacking r-cran-progress (1.2.3-1) ... 1160s Selecting previously unselected package r-cran-vroom. 1160s Preparing to unpack .../265-r-cran-vroom_1.6.5-1_amd64.deb ... 1160s Unpacking r-cran-vroom (1.6.5-1) ... 1160s Selecting previously unselected package r-cran-readr. 1160s Preparing to unpack .../266-r-cran-readr_2.1.5-1_amd64.deb ... 1160s Unpacking r-cran-readr (2.1.5-1) ... 1160s Selecting previously unselected package r-cran-plyr. 1160s Preparing to unpack .../267-r-cran-plyr_1.8.9-1_amd64.deb ... 1160s Unpacking r-cran-plyr (1.8.9-1) ... 1160s Selecting previously unselected package r-cran-stringi. 1160s Preparing to unpack .../268-r-cran-stringi_1.8.4-1build1_amd64.deb ... 1160s Unpacking r-cran-stringi (1.8.4-1build1) ... 1160s Selecting previously unselected package r-cran-stringr. 1160s Preparing to unpack .../269-r-cran-stringr_1.5.1-1_all.deb ... 1160s Unpacking r-cran-stringr (1.5.1-1) ... 1161s Selecting previously unselected package r-cran-reshape2. 1161s Preparing to unpack .../270-r-cran-reshape2_1.4.4-2build1_amd64.deb ... 1161s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 1161s Selecting previously unselected package r-cran-gtable. 1161s Preparing to unpack .../271-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 1161s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 1161s Selecting previously unselected package r-cran-isoband. 1161s Preparing to unpack .../272-r-cran-isoband_0.2.7-1_amd64.deb ... 1161s Unpacking r-cran-isoband (0.2.7-1) ... 1161s Selecting previously unselected package r-cran-mass. 1161s Preparing to unpack .../273-r-cran-mass_7.3-64-1_amd64.deb ... 1161s Unpacking r-cran-mass (7.3-64-1) ... 1161s Selecting previously unselected package r-cran-nlme. 1161s Preparing to unpack .../274-r-cran-nlme_3.1.167-1_amd64.deb ... 1161s Unpacking r-cran-nlme (3.1.167-1) ... 1161s Selecting previously unselected package r-cran-mgcv. 1161s Preparing to unpack .../275-r-cran-mgcv_1.9-1-1_amd64.deb ... 1161s Unpacking r-cran-mgcv (1.9-1-1) ... 1161s Selecting previously unselected package r-cran-farver. 1161s Preparing to unpack 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unpack .../287-r-cran-r.methodss3_1.8.2-1_all.deb ... 1162s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 1162s Selecting previously unselected package r-cran-r.oo. 1162s Preparing to unpack .../288-r-cran-r.oo_1.27.0-1_all.deb ... 1162s Unpacking r-cran-r.oo (1.27.0-1) ... 1162s Selecting previously unselected package r-cran-r.utils. 1162s Preparing to unpack .../289-r-cran-r.utils_2.13.0-1_all.deb ... 1162s Unpacking r-cran-r.utils (2.13.0-1) ... 1162s Selecting previously unselected package r-bioc-cner. 1162s Preparing to unpack .../290-r-bioc-cner_1.42.0+dfsg-2_amd64.deb ... 1162s Unpacking r-bioc-cner (1.42.0+dfsg-2) ... 1162s Selecting previously unselected package r-bioc-dirichletmultinomial. 1162s Preparing to unpack .../291-r-bioc-dirichletmultinomial_1.48.0-2_amd64.deb ... 1162s Unpacking r-bioc-dirichletmultinomial (1.48.0-2) ... 1162s Selecting previously unselected package r-bioc-seqlogo. 1162s Preparing to unpack .../292-r-bioc-seqlogo_1.72.0+dfsg-2_all.deb ... 1162s 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... 1168s Processing triggers for libc-bin (2.41-1ubuntu2) ... 1168s Processing triggers for man-db (2.13.0-1) ... 1170s Processing triggers for install-info (7.1.1-1) ... 1170s Processing triggers for tex-common (6.19) ... 1171s Running updmap-sys. This may take some time... done. 1171s Running mktexlsr /var/lib/texmf ... done. 1171s Building format(s) --all. 1198s This may take some time... done. 1200s autopkgtest [22:21:28]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 1200s autopkgtest [22:21:28]: test pkg-r-autopkgtest: [----------------------- 1200s Test: Try to load the R library TFBSTools 1200s 1200s R version 4.4.3 (2025-02-28) -- "Trophy Case" 1200s Copyright (C) 2025 The R Foundation for Statistical Computing 1200s Platform: x86_64-pc-linux-gnu 1200s 1200s R is free software and comes with ABSOLUTELY NO WARRANTY. 1200s You are welcome to redistribute it under certain conditions. 1200s Type 'license()' or 'licence()' for distribution details. 1200s 1200s R is a collaborative project with many contributors. 1200s Type 'contributors()' for more information and 1200s 'citation()' on how to cite R or R packages in publications. 1200s 1200s Type 'demo()' for some demos, 'help()' for on-line help, or 1200s 'help.start()' for an HTML browser interface to help. 1200s Type 'q()' to quit R. 1200s 1200s > library('TFBSTools') 1210s 1211s > 1211s > 1211s Other tests are currently unsupported! 1211s They will be progressively added. 1212s autopkgtest [22:21:40]: test pkg-r-autopkgtest: -----------------------] 1212s pkg-r-autopkgtest PASS 1212s autopkgtest [22:21:40]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 1212s autopkgtest [22:21:40]: @@@@@@@@@@@@@@@@@@@@ summary 1212s pkg-r-autopkgtest PASS 1229s nova [W] Skipping flock for amd64 1229s Creating nova instance adt-plucky-amd64-r-bioc-tfbstools-20250315-220128-juju-7f2275-prod-proposed-migration-environment-20-9a468c0f-925c-4ca1-8ff0-cd1225b1bd43 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 1229s nova [W] nova quota exceeded (attempt #0) 1229s nova [W] Timed out waiting for 0aed3e21-35d5-46ca-9d3d-4355f7f5f002 to get deleted.