0s autopkgtest [22:01:23]: starting date and time: 2025-03-15 22:01:23+0000 0s autopkgtest [22:01:23]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [22:01:23]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.epb07h_7/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-sparsematrixstats --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@lcy02-5.secgroup --name adt-plucky-amd64-r-bioc-sparsematrixstats-20250315-220122-juju-7f2275-prod-proposed-migration-environment-15-0b1762cd-61a5-454e-a287-e828eb21f1fa --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 52s autopkgtest [22:02:15]: testbed dpkg architecture: amd64 52s autopkgtest [22:02:15]: testbed apt version: 2.9.31ubuntu1 52s autopkgtest [22:02:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 52s autopkgtest [22:02:15]: testbed release detected to be: None 52s autopkgtest [22:02:15]: updating testbed package index (apt update) 53s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 53s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 53s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 53s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 53s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 53s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 53s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 53s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 53s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 53s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 53s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 53s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 53s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 53s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 53s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 53s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 53s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 53s Fetched 1265 kB in 0s (5518 kB/s) 54s Reading package lists... 54s + lsb_release --codename --short 54s + RELEASE=plucky 54s + cat 54s + [ plucky != trusty ] 54s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 54s Reading package lists... 54s Building dependency tree... 54s Reading state information... 55s Calculating upgrade... 55s Calculating upgrade... 55s The following package was automatically installed and is no longer required: 55s libnl-genl-3-200 55s Use 'sudo apt autoremove' to remove it. 55s The following NEW packages will be installed: 55s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 55s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 55s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 55s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 55s The following packages will be upgraded: 55s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 55s cloud-init cloud-init-base curl dosfstools fwupd gir1.2-girepository-2.0 55s gir1.2-glib-2.0 htop hwdata libapparmor1 libapt-pkg7.0 libaudit-common 55s libaudit1 libbinutils libbrotli1 libcap-ng0 libctf-nobfd0 libctf0 55s libcurl3t64-gnutls libcurl4t64 libestr0 libfwupd3 libgirepository-1.0-1 55s libglib2.0-0t64 libglib2.0-data libgprofng0 libjemalloc2 liblz4-1 liblzma5 55s libmm-glib0 libncurses6 libncursesw6 libnl-3-200 libnl-genl-3-200 55s libnl-route-3-200 libpci3 libpython3-stdlib libpython3.13 55s libpython3.13-minimal libpython3.13-stdlib libselinux1 libsframe1 55s libsqlite3-0 libtinfo6 libxml2 linux-firmware linux-generic 55s linux-headers-generic linux-headers-virtual linux-image-generic 55s linux-image-virtual linux-libc-dev linux-tools-common linux-virtual 55s media-types ncurses-base ncurses-bin ncurses-term pci.ids pciutils 55s pinentry-curses python-apt-common python3 python3-apt python3-cffi-backend 55s python3-dbus python3-gi python3-jinja2 python3-lazr.uri python3-markupsafe 55s python3-minimal python3-systemd python3-yaml python3.13 python3.13-gdbm 55s python3.13-minimal rsync rsyslog strace xz-utils 55s 86 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 55s Need to get 807 MB of archives. 55s After this operation, 326 MB of additional disk space will be used. 55s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 55s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 55s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 55s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 55s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 55s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 55s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 55s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 55s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 55s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 55s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 55s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 55s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 55s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 55s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 55s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 55s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 55s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 55s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 55s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 55s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 55s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 55s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 55s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 55s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 55s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 55s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 55s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 55s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 55s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 55s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 55s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 55s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 55s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 55s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 55s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 55s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 55s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 55s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 55s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 55s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 55s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 55s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 55s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 55s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 55s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 55s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 55s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 55s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 55s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 55s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 55s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 55s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 55s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 55s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 55s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 55s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 55s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 55s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 55s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 55s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 55s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 55s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 55s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 55s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 55s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 55s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 55s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 55s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 55s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 55s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 55s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 55s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 55s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 55s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 55s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 55s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 55s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 60s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 60s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 60s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 61s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 61s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 61s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 61s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 61s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 61s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 61s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 61s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 61s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 61s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 61s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 61s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 61s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 61s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 61s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 61s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 61s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 62s Preconfiguring packages ... 62s Fetched 807 MB in 6s (129 MB/s) 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 62s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ... 62s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ... 62s Setting up ncurses-bin (6.5+20250216-2) ... 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 62s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... 62s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ... 62s Setting up ncurses-base (6.5+20250216-2) ... 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 62s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ... 62s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ... 63s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ... 63s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ... 63s Setting up liblz4-1:amd64 (1.10.0-4) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 63s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ... 63s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ... 63s Setting up liblzma5:amd64 (5.6.4-1) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 63s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 63s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 63s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 63s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 63s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 64s Setting up apt (2.9.33) ... 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 64s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 64s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 64s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 64s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 64s Setting up python3-minimal (3.13.2-2) ... 65s (Reading database ... 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Preparing to unpack .../68-python3-systemd_235-1build6_amd64.deb ... 80s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 80s Preparing to unpack .../69-python3.13-gdbm_3.13.2-2_amd64.deb ... 80s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 80s Preparing to unpack .../70-cloud-init_25.1-0ubuntu3_all.deb ... 80s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 81s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 81s Setting up media-types (13.0.0) ... 81s Installing new version of config file /etc/mime.types ... 81s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 81s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 81s Setting up pci.ids (0.0~2025.03.09-1) ... 81s Setting up apt-utils (2.9.33) ... 81s Setting up libdebuginfod-common (0.192-4) ... 81s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 81s Setting up bpftool (7.6.0+6.14.0-10.10) ... 81s Setting up libestr0:amd64 (0.1.11-2) ... 81s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 81s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 81s Setting up dosfstools (4.2-1.2) ... 81s Setting up rsyslog (8.2412.0-2ubuntu2) ... 81s info: The user `syslog' is already a member of `adm'. 82s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 82s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 82s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 82s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 82s Setting up linux-headers-generic (6.14.0-10.10) ... 82s Setting up libjemalloc2:amd64 (5.3.0-3) ... 82s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 82s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 82s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 82s Installing new version of config file /etc/apparmor.d/openvpn ... 83s Reloading AppArmor profiles 85s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 85s No schema files found: doing nothing. 85s Setting up libglib2.0-data (2.84.0-1) ... 85s Setting up libncurses6:amd64 (6.5+20250216-2) ... 85s Setting up strace (6.13+ds-1ubuntu1) ... 85s Setting up xz-utils (5.6.4-1) ... 85s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 85s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 87s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 87s Setting up libpci3:amd64 (1:3.13.0-2) ... 87s Setting up python-apt-common (2.9.9build1) ... 87s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 87s Setting up pnp.ids (0.393-3) ... 87s Setting up libnl-3-200:amd64 (3.7.0-1) ... 87s Setting up python3.13-minimal (3.13.2-2) ... 88s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 88s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 88s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 88s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 88s Setting up rsync (3.4.1+ds1-3) ... 88s rsync.service is a disabled or a static unit not running, not starting it. 88s Setting up python3.13-gdbm (3.13.2-2) ... 88s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 88s Setting up ncurses-term (6.5+20250216-2) ... 88s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 88s Setting up libpython3.13:amd64 (3.13.2-2) ... 88s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 88s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 88s Setting up linux-headers-virtual (6.14.0-10.10) ... 88s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 88s Setting up python3.13 (3.13.2-2) ... 89s Setting up htop (3.4.0-2) ... 89s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 91s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 91s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 91s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 91s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 91s Setting up libfwupd3:amd64 (2.0.6-4) ... 91s Setting up python3 (3.13.2-2) ... 92s Setting up python3-markupsafe (2.1.5-1build4) ... 92s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 94s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 94s Setting up hwdata (0.393-3) ... 94s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 94s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 94s Setting up linux-perf (6.14.0-10.10) ... 94s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 94s Setting up python3-gi (3.50.0-4build1) ... 94s Setting up pciutils (1:3.13.0-2) ... 94s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 94s Setting up curl (8.12.1-3ubuntu1) ... 94s Setting up linux-image-virtual (6.14.0-10.10) ... 94s Setting up linux-tools-common (6.14.0-10.10) ... 94s Setting up fwupd (2.0.6-4) ... 95s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 95s fwupd.service is a disabled or a static unit not running, not starting it. 95s Setting up python3-systemd (235-1build6) ... 95s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 95s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 95s Setting up linux-image-generic (6.14.0-10.10) ... 95s Setting up python3-dbus (1.3.2-5build5) ... 95s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 95s Setting up linux-generic (6.14.0-10.10) ... 95s Setting up python3-apt (2.9.9build1) ... 95s Setting up python3-yaml (6.0.2-1build2) ... 95s Setting up python3-lazr.uri (1.0.6-6) ... 95s Setting up binutils (2.44-3ubuntu1) ... 95s Setting up cloud-init-base (25.1-0ubuntu3) ... 97s Setting up linux-virtual (6.14.0-10.10) ... 97s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 97s Setting up cloud-init (25.1-0ubuntu3) ... 97s Processing triggers for systemd (257.3-1ubuntu3) ... 97s Processing triggers for man-db (2.13.0-1) ... 99s Processing triggers for dbus (1.16.2-1ubuntu1) ... 99s Processing triggers for libc-bin (2.41-1ubuntu1) ... 99s Processing triggers for initramfs-tools (0.146ubuntu1) ... 99s update-initramfs: Generating /boot/initrd.img-6.12.0-16-generic 99s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 109s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 109s /etc/kernel/postinst.d/initramfs-tools: 109s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 109s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 120s /etc/kernel/postinst.d/zz-update-grub: 120s Sourcing file `/etc/default/grub' 120s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 120s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 120s Generating grub configuration file ... 120s Found linux image: /boot/vmlinuz-6.14.0-10-generic 120s Found initrd image: /boot/initrd.img-6.14.0-10-generic 120s Found linux image: /boot/vmlinuz-6.12.0-16-generic 120s Found initrd image: /boot/initrd.img-6.12.0-16-generic 120s Found linux image: /boot/vmlinuz-6.11.0-8-generic 120s Found initrd image: /boot/initrd.img-6.11.0-8-generic 120s Warning: os-prober will not be executed to detect other bootable partitions. 120s Systems on them will not be added to the GRUB boot configuration. 120s Check GRUB_DISABLE_OS_PROBER documentation entry. 120s Adding boot menu entry for UEFI Firmware Settings ... 120s done 120s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 120s + /usr/lib/apt/apt-helper analyze-pattern ?true 120s + + sed s/\./\\./g 120s uname -r 120s + running_kernel_pattern=^linux-.*6\.12\.0-16-generic.* 120s + apt list ?obsolete 120s + tail -n+2 120s + grep -v ^linux-.*6\.12\.0-16-generic.* 120s + cut -d/ -f1 122s + obsolete_pkgs=linux-headers-6.11.0-8-generic 122s linux-headers-6.11.0-8 122s linux-headers-6.12.0-16 122s linux-image-6.11.0-8-generic 122s linux-modules-6.11.0-8-generic 122s linux-tools-6.11.0-8-generic 122s linux-tools-6.11.0-8 122s linux-tools-6.12.0-16 122s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-headers-6.12.0-16 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 linux-tools-6.12.0-16 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 122s Solving dependencies... 123s The following packages will be REMOVED: 123s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 123s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 123s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 123s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 123s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 123s linux-tools-6.12.0-16-generic* 123s 0 upgraded, 0 newly installed, 15 to remove and 5 not upgraded. 123s After this operation, 371 MB disk space will be freed. 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 123s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 123s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 123s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 123s Removing libpython3.12t64:amd64 (3.12.9-1) ... 123s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 123s Removing libnsl2:amd64 (1.3.0-3build3) ... 123s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 123s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 124s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 126s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 126s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 128s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 129s /etc/kernel/postrm.d/initramfs-tools: 129s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 129s /etc/kernel/postrm.d/zz-update-grub: 129s Sourcing file `/etc/default/grub' 129s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 129s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 129s Generating grub configuration file ... 129s Found linux image: /boot/vmlinuz-6.14.0-10-generic 129s Found initrd image: /boot/initrd.img-6.14.0-10-generic 129s Found linux image: /boot/vmlinuz-6.12.0-16-generic 129s Found initrd image: /boot/initrd.img-6.12.0-16-generic 129s Warning: os-prober will not be executed to detect other bootable partitions. 129s Systems on them will not be added to the GRUB boot configuration. 129s Check GRUB_DISABLE_OS_PROBER documentation entry. 129s Adding boot menu entry for UEFI Firmware Settings ... 129s done 129s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 129s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 129s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 130s Processing triggers for libc-bin (2.41-1ubuntu1) ... 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84830 files and directories currently installed.) 130s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 130s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 130s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 130s + grep -q trusty /etc/lsb-release 130s + [ ! -d /usr/share/doc/unattended-upgrades ] 130s + [ ! -d /usr/share/doc/lxd ] 130s + [ ! -d /usr/share/doc/lxd-client ] 130s + [ ! -d /usr/share/doc/snapd ] 130s + type iptables 130s + cat 130s + chmod 755 /etc/rc.local 130s + . /etc/rc.local 130s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 130s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 130s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 130s + uname -m 130s + [ x86_64 = ppc64le ] 130s + [ -d /run/systemd/system ] 130s + systemd-detect-virt --quiet --vm 130s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 130s + cat 130s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 130s + echo COMPRESS=lz4 130s autopkgtest [22:03:33]: upgrading testbed (apt dist-upgrade and autopurge) 130s Reading package lists... 130s Building dependency tree... 130s Reading state information... 131s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 131s Starting 2 pkgProblemResolver with broken count: 0 131s Done 131s Entering ResolveByKeep 132s 133s Calculating upgrade... 133s The following packages will be upgraded: 133s libc-bin libc-dev-bin libc6 libc6-dev locales 137s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 137s Need to get 10.5 MB of archives. 137s After this operation, 1024 B of additional disk space will be used. 137s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 137s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 137s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 138s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 138s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 138s Preconfiguring packages ... 138s Fetched 10.5 MB in 6s (1863 kB/s) 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 138s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 138s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 139s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 139s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 139s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 139s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 139s Setting up libc6:amd64 (2.41-1ubuntu2) ... 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 139s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 139s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 139s Setting up libc-bin (2.41-1ubuntu2) ... 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 139s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 139s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 140s Setting up locales (2.41-1ubuntu2) ... 140s Generating locales (this might take a while)... 142s en_US.UTF-8... done 142s Generation complete. 142s Setting up libc-dev-bin (2.41-1ubuntu2) ... 142s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 142s Processing triggers for man-db (2.13.0-1) ... 142s Processing triggers for systemd (257.3-1ubuntu3) ... 143s Reading package lists... 143s Building dependency tree... 143s Reading state information... 144s Starting pkgProblemResolver with broken count: 0 144s Starting 2 pkgProblemResolver with broken count: 0 144s Done 144s Solving dependencies... 144s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 144s autopkgtest [22:03:47]: rebooting testbed after setup commands that affected boot 148s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 161s autopkgtest [22:04:04]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 161s autopkgtest [22:04:04]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-sparsematrixstats 162s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-sparsematrixstats 1.18.0+dfsg-2 (dsc) [2332 B] 162s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-sparsematrixstats 1.18.0+dfsg-2 (tar) [471 kB] 162s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-sparsematrixstats 1.18.0+dfsg-2 (diff) [3264 B] 163s gpgv: Signature made Sat Jan 11 21:20:45 2025 UTC 163s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 163s gpgv: issuer "crusoe@debian.org" 163s gpgv: Can't check signature: No public key 163s dpkg-source: warning: cannot verify inline signature for ./r-bioc-sparsematrixstats_1.18.0+dfsg-2.dsc: no acceptable signature found 163s autopkgtest [22:04:06]: testing package r-bioc-sparsematrixstats version 1.18.0+dfsg-2 163s autopkgtest [22:04:06]: build not needed 164s autopkgtest [22:04:07]: test pkg-r-autopkgtest: preparing testbed 164s Reading package lists... 165s Building dependency tree... 165s Reading state information... 165s Starting pkgProblemResolver with broken count: 0 165s Starting 2 pkgProblemResolver with broken count: 0 165s Done 165s The following NEW packages will be installed: 165s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 165s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 165s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 165s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 165s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 165s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 165s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 165s libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev libdeflate0 165s libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 libgomp1 165s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 165s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 165s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 165s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 165s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 165s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 165s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 165s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 165s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev 165s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 165s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 165s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 165s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6 165s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 165s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 165s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 165s littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc 165s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 165s r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biocversion 165s r-bioc-matrixgenerics r-bioc-sparsematrixstats r-cran-base64enc r-cran-bench 165s r-cran-biocmanager r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem 165s r-cran-callr r-cran-cli r-cran-commonmark r-cran-crayon r-cran-desc 165s r-cran-diffobj r-cran-digest r-cran-evaluate r-cran-fansi r-cran-fastmap 165s r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools 165s r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later 165s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix 165s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-pillar r-cran-pkgbuild 165s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-praise 165s r-cran-processx r-cran-profmem r-cran-promises r-cran-ps r-cran-r6 165s r-cran-rappdirs r-cran-rcpp r-cran-rlang r-cran-rmarkdown r-cran-rprojroot 165s r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-testthat r-cran-tibble 165s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-withr 165s r-cran-xfun r-cran-xtable r-cran-yaml t1utils tex-common texlive-base 165s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 165s xdg-utils zip zlib1g-dev 165s 0 upgraded, 219 newly installed, 0 to remove and 0 not upgraded. 165s Need to get 343 MB of archives. 165s After this operation, 1068 MB of additional disk space will be used. 165s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 166s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 166s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 166s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 166s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 166s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 166s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 166s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 166s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 166s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 166s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 166s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 166s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 166s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 166s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 166s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 166s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 166s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 166s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 166s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 166s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 166s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 166s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 166s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 166s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 166s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 166s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 166s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 166s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 166s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 166s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 166s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 166s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 166s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 166s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 166s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 166s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 166s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 166s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 166s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 166s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 166s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 166s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 166s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 166s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 166s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 166s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 166s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 166s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 166s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 166s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 166s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 166s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 166s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 166s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 166s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 166s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 166s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 166s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 166s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 166s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 166s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 166s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 167s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 167s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 167s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 167s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 167s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 167s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 167s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 167s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 167s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 167s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 167s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 167s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 167s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 167s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 167s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 167s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 167s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 167s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 167s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 167s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 167s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB] 167s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 167s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 167s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 167s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 167s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 167s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 167s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 167s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 167s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 167s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 167s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 167s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 167s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 167s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 167s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 167s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 167s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 167s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 167s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 167s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 167s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 167s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB] 167s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 167s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 167s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 167s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB] 167s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 167s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 167s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB] 167s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 167s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 167s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 167s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 167s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 167s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 167s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 167s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 167s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 167s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 167s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 167s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 167s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 167s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 167s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 167s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 167s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 167s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 167s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 167s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 167s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 167s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 167s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 167s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 167s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 167s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 167s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 167s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 167s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 167s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 167s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 167s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 167s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 167s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 167s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 167s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 167s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 167s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 167s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 167s Get:153 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 167s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 167s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 167s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 167s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 167s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 167s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 167s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 167s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 167s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 167s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 167s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 167s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 167s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 167s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 167s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 167s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 167s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 167s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 167s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 167s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 167s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 167s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 167s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 167s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 167s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 167s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 167s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 167s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 167s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 167s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 168s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 168s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 168s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 168s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB] 168s Get:188 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 168s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB] 168s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB] 168s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB] 168s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 169s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 169s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 169s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 169s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 169s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 169s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 169s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsematrixstats amd64 1.18.0+dfsg-2 [877 kB] 169s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 169s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 169s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 169s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-profmem all 0.6.0+dfsg-1 [46.5 kB] 169s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 169s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 169s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 169s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bench amd64 1.1.4-1 [305 kB] 169s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 169s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 169s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 169s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 169s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 169s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 169s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 169s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] 169s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 169s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 169s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-2 [150 kB] 169s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 170s Preconfiguring packages ... 170s Fetched 343 MB in 4s (85.6 MB/s) 170s Selecting previously unselected package libisl23:amd64. 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 170s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 170s Unpacking libisl23:amd64 (0.27-1) ... 171s Selecting previously unselected package libmpc3:amd64. 171s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 171s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 171s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 171s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 171s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 171s Selecting previously unselected package cpp-14. 171s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 171s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 171s Selecting previously unselected package cpp-x86-64-linux-gnu. 171s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 171s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 171s Selecting previously unselected package cpp. 171s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 171s Unpacking cpp (4:14.2.0-1ubuntu1) ... 171s Selecting previously unselected package libcc1-0:amd64. 171s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 171s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 171s Selecting previously unselected package libgomp1:amd64. 171s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 171s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 171s Selecting previously unselected package libitm1:amd64. 171s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 171s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 171s Selecting previously unselected package libasan8:amd64. 171s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 171s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 171s Selecting previously unselected package liblsan0:amd64. 171s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 171s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 171s Selecting previously unselected package libtsan2:amd64. 171s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 171s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 171s Selecting previously unselected package libubsan1:amd64. 171s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 171s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 171s Selecting previously unselected package libhwasan0:amd64. 171s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 171s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 171s Selecting previously unselected package libquadmath0:amd64. 171s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 171s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 171s Selecting previously unselected package libgcc-14-dev:amd64. 171s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 171s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 172s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 172s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 172s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 172s Selecting previously unselected package gcc-14. 172s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 172s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 172s Selecting previously unselected package gcc-x86-64-linux-gnu. 172s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 172s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 172s Selecting previously unselected package gcc. 172s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 172s Unpacking gcc (4:14.2.0-1ubuntu1) ... 172s Selecting previously unselected package libstdc++-14-dev:amd64. 172s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 172s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 172s Selecting previously unselected package g++-14-x86-64-linux-gnu. 172s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 172s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 172s Selecting previously unselected package g++-14. 172s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ... 172s Unpacking g++-14 (14.2.0-17ubuntu3) ... 172s Selecting previously unselected package g++-x86-64-linux-gnu. 172s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 172s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 172s Selecting previously unselected package g++. 172s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 172s Unpacking g++ (4:14.2.0-1ubuntu1) ... 172s Selecting previously unselected package build-essential. 172s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 172s Unpacking build-essential (12.10ubuntu1) ... 172s Selecting previously unselected package dctrl-tools. 172s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 172s Unpacking dctrl-tools (2.24-3build3) ... 173s Selecting previously unselected package fonts-dejavu-mono. 173s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 173s Unpacking fonts-dejavu-mono (2.37-8) ... 173s Selecting previously unselected package fonts-dejavu-core. 173s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 173s Unpacking fonts-dejavu-core (2.37-8) ... 173s Selecting previously unselected package fontconfig-config. 173s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 173s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 173s Selecting previously unselected package libfontconfig1:amd64. 173s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 173s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 173s Selecting previously unselected package fontconfig. 173s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 173s Unpacking fontconfig (2.15.0-2ubuntu1) ... 173s Selecting previously unselected package fonts-font-awesome. 173s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 173s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 173s Selecting previously unselected package fonts-glyphicons-halflings. 173s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 173s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 173s Selecting previously unselected package fonts-lmodern. 173s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ... 173s Unpacking fonts-lmodern (2.005-1) ... 173s Selecting previously unselected package fonts-mathjax. 173s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 173s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 173s Selecting previously unselected package libgfortran5:amd64. 173s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 173s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 173s Selecting previously unselected package libgfortran-14-dev:amd64. 173s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 173s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 173s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 173s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 173s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 173s Selecting previously unselected package gfortran-14. 173s Preparing to unpack .../039-gfortran-14_14.2.0-17ubuntu3_amd64.deb ... 173s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 173s Selecting previously unselected package gfortran-x86-64-linux-gnu. 173s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 173s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 174s Selecting previously unselected package gfortran. 174s Preparing to unpack .../041-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 174s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 174s Selecting previously unselected package icu-devtools. 174s Preparing to unpack .../042-icu-devtools_76.1-1ubuntu2_amd64.deb ... 174s Unpacking icu-devtools (76.1-1ubuntu2) ... 174s Selecting previously unselected package javascript-common. 174s Preparing to unpack .../043-javascript-common_12_all.deb ... 174s Unpacking javascript-common (12) ... 174s Selecting previously unselected package libio-string-perl. 174s Preparing to unpack .../044-libio-string-perl_1.08-4_all.deb ... 174s Unpacking libio-string-perl (1.08-4) ... 174s Selecting previously unselected package liblatex-tounicode-perl. 174s Preparing to unpack .../045-liblatex-tounicode-perl_0.55-1_all.deb ... 174s Unpacking liblatex-tounicode-perl (0.55-1) ... 174s Selecting previously unselected package libbibtex-parser-perl. 174s Preparing to unpack .../046-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 174s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 174s Selecting previously unselected package libblas3:amd64. 174s Preparing to unpack .../047-libblas3_3.12.1-2_amd64.deb ... 174s Unpacking libblas3:amd64 (3.12.1-2) ... 174s Selecting previously unselected package libblas-dev:amd64. 174s Preparing to unpack .../048-libblas-dev_3.12.1-2_amd64.deb ... 174s Unpacking libblas-dev:amd64 (3.12.1-2) ... 174s Selecting previously unselected package libbz2-dev:amd64. 174s Preparing to unpack .../049-libbz2-dev_1.0.8-6_amd64.deb ... 174s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 174s Selecting previously unselected package libpixman-1-0:amd64. 174s Preparing to unpack .../050-libpixman-1-0_0.44.0-3_amd64.deb ... 174s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 174s Selecting previously unselected package libxcb-render0:amd64. 174s Preparing to unpack .../051-libxcb-render0_1.17.0-2_amd64.deb ... 174s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 174s Selecting previously unselected package libxcb-shm0:amd64. 174s Preparing to unpack .../052-libxcb-shm0_1.17.0-2_amd64.deb ... 174s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 174s Selecting previously unselected package libxrender1:amd64. 174s Preparing to unpack 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175s Selecting previously unselected package liblapack-dev:amd64. 175s Preparing to unpack .../085-liblapack-dev_3.12.1-2_amd64.deb ... 175s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 176s Selecting previously unselected package liblerc4:amd64. 176s Preparing to unpack .../086-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 176s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 176s Selecting previously unselected package liblua5.4-0:amd64. 176s Preparing to unpack .../087-liblua5.4-0_5.4.7-1_amd64.deb ... 176s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 176s Selecting previously unselected package libmpfi0:amd64. 176s Preparing to unpack .../088-libmpfi0_1.5.4+ds-4_amd64.deb ... 176s Unpacking libmpfi0:amd64 (1.5.4+ds-4) ... 176s Selecting previously unselected package libncurses-dev:amd64. 176s Preparing to unpack .../089-libncurses-dev_6.5+20250216-2_amd64.deb ... 176s Unpacking libncurses-dev:amd64 (6.5+20250216-2) ... 176s Selecting previously unselected package libthai-data. 176s 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(10.45-1) ... 176s Selecting previously unselected package libpkgconf3:amd64. 176s Preparing to unpack .../101-libpkgconf3_1.8.1-4_amd64.deb ... 176s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 176s Selecting previously unselected package zlib1g-dev:amd64. 176s Preparing to unpack .../102-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 176s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 176s Selecting previously unselected package libpng-dev:amd64. 176s Preparing to unpack .../103-libpng-dev_1.6.47-1_amd64.deb ... 176s Unpacking libpng-dev:amd64 (1.6.47-1) ... 176s Selecting previously unselected package libpotrace0:amd64. 176s Preparing to unpack .../104-libpotrace0_1.16-2build1_amd64.deb ... 176s Unpacking libpotrace0:amd64 (1.16-2build1) ... 176s Selecting previously unselected package libptexenc1:amd64. 176s Preparing to unpack .../105-libptexenc1_2024.20240313.70630+ds-6_amd64.deb ... 176s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-6) ... 176s Selecting previously unselected package libreadline-dev:amd64. 176s Preparing to unpack .../106-libreadline-dev_8.2-6_amd64.deb ... 176s Unpacking libreadline-dev:amd64 (8.2-6) ... 176s Selecting previously unselected package libsharpyuv0:amd64. 176s Preparing to unpack .../107-libsharpyuv0_1.5.0-0.1_amd64.deb ... 176s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 176s Selecting previously unselected package libsm6:amd64. 176s Preparing to unpack .../108-libsm6_2%3a1.2.4-1_amd64.deb ... 176s Unpacking libsm6:amd64 (2:1.2.4-1) ... 176s Selecting previously unselected package libsynctex2:amd64. 176s Preparing to unpack .../109-libsynctex2_2024.20240313.70630+ds-6_amd64.deb ... 176s Unpacking libsynctex2:amd64 (2024.20240313.70630+ds-6) ... 176s Selecting previously unselected package libtcl8.6:amd64. 176s Preparing to unpack .../110-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 176s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 177s Selecting previously unselected package libteckit0:amd64. 177s Preparing to unpack .../111-libteckit0_2.5.12+ds1-1_amd64.deb ... 177s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 177s Selecting previously unselected package libtexlua53-5:amd64. 177s Preparing to unpack .../112-libtexlua53-5_2024.20240313.70630+ds-6_amd64.deb ... 177s Unpacking libtexlua53-5:amd64 (2024.20240313.70630+ds-6) ... 177s Selecting previously unselected package libjbig0:amd64. 177s Preparing to unpack .../113-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 177s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 177s Selecting previously unselected package libwebp7:amd64. 177s Preparing to unpack .../114-libwebp7_1.5.0-0.1_amd64.deb ... 177s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 177s Selecting previously unselected package libtiff6:amd64. 177s Preparing to unpack .../115-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 177s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 177s Selecting previously unselected package libxft2:amd64. 177s Preparing to unpack .../116-libxft2_2.3.6-1build1_amd64.deb ... 177s Unpacking libxft2:amd64 (2.3.6-1build1) ... 177s Selecting previously unselected package libxss1:amd64. 177s Preparing to unpack .../117-libxss1_1%3a1.2.3-1build3_amd64.deb ... 177s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 177s Selecting previously unselected package libtk8.6:amd64. 177s Preparing to unpack .../118-libtk8.6_8.6.16-1_amd64.deb ... 177s Unpacking libtk8.6:amd64 (8.6.16-1) ... 177s Selecting previously unselected package libxt6t64:amd64. 177s Preparing to unpack .../119-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 177s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 177s Selecting previously unselected package libxmu6:amd64. 177s Preparing to unpack .../120-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 177s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 177s Selecting previously unselected package libxpm4:amd64. 177s Preparing to unpack .../121-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 177s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 177s Selecting previously unselected package libxaw7:amd64. 177s Preparing to unpack .../122-libxaw7_2%3a1.0.16-1_amd64.deb ... 177s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 177s Selecting previously unselected package libxi6:amd64. 177s Preparing to unpack .../123-libxi6_2%3a1.8.2-1_amd64.deb ... 177s Unpacking libxi6:amd64 (2:1.8.2-1) ... 177s Selecting previously unselected package libzzip-0-13t64:amd64. 177s Preparing to unpack .../124-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 177s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 177s Selecting previously unselected package zip. 177s Preparing to unpack .../125-zip_3.0-14ubuntu2_amd64.deb ... 177s Unpacking zip (3.0-14ubuntu2) ... 177s Selecting previously unselected package unzip. 177s Preparing to unpack .../126-unzip_6.0-28ubuntu6_amd64.deb ... 177s Unpacking unzip (6.0-28ubuntu6) ... 177s Selecting previously unselected package xdg-utils. 177s Preparing to unpack .../127-xdg-utils_1.2.1-2ubuntu1_all.deb ... 177s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 177s Selecting previously unselected package r-base-core. 177s Preparing to unpack .../128-r-base-core_4.4.3-1_amd64.deb ... 177s Unpacking r-base-core (4.4.3-1) ... 177s Selecting previously unselected package r-cran-littler. 177s Preparing to unpack .../129-r-cran-littler_0.3.20-2_amd64.deb ... 177s Unpacking r-cran-littler (0.3.20-2) ... 177s Selecting previously unselected package littler. 178s Preparing to unpack .../130-littler_0.3.20-2_all.deb ... 178s Unpacking littler (0.3.20-2) ... 178s Selecting previously unselected package node-bootstrap-sass. 178s Preparing to unpack .../131-node-bootstrap-sass_3.4.3-2_all.deb ... 178s Unpacking node-bootstrap-sass (3.4.3-2) ... 178s Selecting previously unselected package node-html5shiv. 178s Preparing to unpack .../132-node-html5shiv_3.7.3+dfsg-5_all.deb ... 178s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 178s Selecting previously unselected package node-normalize.css. 178s Preparing to unpack .../133-node-normalize.css_8.0.1-5_all.deb ... 178s Unpacking node-normalize.css (8.0.1-5) ... 178s Selecting previously unselected package pandoc-data. 178s Preparing to unpack .../134-pandoc-data_3.1.11.1-3build1_all.deb ... 178s Unpacking pandoc-data (3.1.11.1-3build1) ... 178s Selecting previously unselected package pandoc. 178s Preparing to unpack .../135-pandoc_3.1.11.1+ds-2_amd64.deb ... 178s Unpacking pandoc (3.1.11.1+ds-2) ... 178s Selecting previously unselected package liblzma-dev:amd64. 178s Preparing to unpack .../136-liblzma-dev_5.6.4-1_amd64.deb ... 178s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 178s Selecting previously unselected package pkgconf-bin. 178s Preparing to unpack .../137-pkgconf-bin_1.8.1-4_amd64.deb ... 178s Unpacking pkgconf-bin (1.8.1-4) ... 178s Selecting previously unselected package pkgconf:amd64. 178s Preparing to unpack .../138-pkgconf_1.8.1-4_amd64.deb ... 178s Unpacking pkgconf:amd64 (1.8.1-4) ... 178s Selecting previously unselected package libtirpc-dev:amd64. 179s Preparing to unpack .../139-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 179s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 179s Selecting previously unselected package r-base-dev. 179s Preparing to unpack .../140-r-base-dev_4.4.3-1_all.deb ... 179s Unpacking r-base-dev (4.4.3-1) ... 179s Selecting previously unselected package pkg-r-autopkgtest. 179s Preparing to unpack .../141-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 179s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 179s Selecting previously unselected package r-bioc-biocgenerics. 179s Preparing to unpack .../142-r-bioc-biocgenerics_0.52.0-2_all.deb ... 179s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 179s Selecting previously unselected package r-cran-base64enc. 179s Preparing to unpack .../143-r-cran-base64enc_0.1-3-3_amd64.deb ... 179s Unpacking r-cran-base64enc (0.1-3-3) ... 179s Selecting previously unselected package r-cran-digest. 179s Preparing to unpack .../144-r-cran-digest_0.6.37-1_amd64.deb ... 179s Unpacking r-cran-digest (0.6.37-1) ... 179s Selecting previously unselected package r-cran-fastmap. 179s Preparing to unpack .../145-r-cran-fastmap_1.2.0-1_amd64.deb ... 179s Unpacking r-cran-fastmap (1.2.0-1) ... 179s Selecting previously unselected package r-cran-rlang. 179s Preparing to unpack .../146-r-cran-rlang_1.1.5-1_amd64.deb ... 179s Unpacking r-cran-rlang (1.1.5-1) ... 179s Selecting previously unselected package r-cran-htmltools. 179s Preparing to unpack .../147-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 179s Unpacking r-cran-htmltools (0.5.8.1-1) ... 179s Selecting previously unselected package r-cran-evaluate. 179s Preparing to unpack .../148-r-cran-evaluate_1.0.3-1_all.deb ... 179s Unpacking r-cran-evaluate (1.0.3-1) ... 179s Selecting previously unselected package r-cran-xfun. 179s Preparing to unpack .../149-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 179s Unpacking r-cran-xfun (0.51+dfsg-1) ... 179s Selecting previously unselected package r-cran-highr. 179s Preparing to unpack .../150-r-cran-highr_0.11+dfsg-1_all.deb ... 179s Unpacking r-cran-highr (0.11+dfsg-1) ... 179s Selecting previously unselected package r-cran-yaml. 179s Preparing to unpack .../151-r-cran-yaml_2.3.10-1_amd64.deb ... 179s Unpacking r-cran-yaml (2.3.10-1) ... 179s Selecting previously unselected package libjs-mathjax. 179s Preparing to unpack .../152-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 179s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 180s Selecting previously unselected package r-cran-knitr. 180s Preparing to unpack .../153-r-cran-knitr_1.49+dfsg-1_all.deb ... 180s Unpacking r-cran-knitr (1.49+dfsg-1) ... 180s Selecting previously unselected package r-cran-cachem. 180s Preparing to unpack .../154-r-cran-cachem_1.1.0-1_amd64.deb ... 180s Unpacking r-cran-cachem (1.1.0-1) ... 180s Selecting previously unselected package r-cran-jquerylib. 180s Preparing to unpack .../155-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 180s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 180s Selecting previously unselected package r-cran-jsonlite. 180s Preparing to unpack .../156-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 180s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 180s Selecting previously unselected package r-cran-cli. 180s Preparing to unpack .../157-r-cran-cli_3.6.4-1_amd64.deb ... 180s Unpacking r-cran-cli (3.6.4-1) ... 180s Selecting previously unselected package r-cran-glue. 180s Preparing to unpack .../158-r-cran-glue_1.8.0-1_amd64.deb ... 180s Unpacking r-cran-glue (1.8.0-1) ... 180s Selecting previously unselected package r-cran-lifecycle. 180s Preparing to unpack .../159-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 180s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 180s Selecting previously unselected package r-cran-memoise. 180s Preparing to unpack .../160-r-cran-memoise_2.0.1-1_all.deb ... 180s Unpacking r-cran-memoise (2.0.1-1) ... 180s Selecting previously unselected package r-cran-mime. 180s Preparing to unpack .../161-r-cran-mime_0.12-2_amd64.deb ... 180s Unpacking r-cran-mime (0.12-2) ... 180s Selecting previously unselected package r-cran-fs. 180s Preparing to unpack .../162-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 180s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 180s Selecting previously unselected package r-cran-r6. 180s Preparing to unpack .../163-r-cran-r6_2.6.1-1_all.deb ... 180s Unpacking r-cran-r6 (2.6.1-1) ... 180s Selecting previously unselected package r-cran-rappdirs. 180s Preparing to unpack .../164-r-cran-rappdirs_0.3.3-1_amd64.deb ... 180s Unpacking r-cran-rappdirs (0.3.3-1) ... 180s Selecting previously unselected package r-cran-sass. 180s Preparing to unpack .../165-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 180s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 180s Selecting previously unselected package r-cran-bslib. 180s Preparing to unpack .../166-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 180s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 180s Selecting previously unselected package r-cran-fontawesome. 181s Preparing to unpack .../167-r-cran-fontawesome_0.5.3-1_all.deb ... 181s Unpacking r-cran-fontawesome (0.5.3-1) ... 181s Selecting previously unselected package r-cran-tinytex. 181s Preparing to unpack .../168-r-cran-tinytex_0.56-1_all.deb ... 181s Unpacking r-cran-tinytex (0.56-1) ... 181s Selecting previously unselected package libjs-modernizr. 181s Preparing to unpack .../169-libjs-modernizr_3.13.0-0.1_all.deb ... 181s Unpacking libjs-modernizr (3.13.0-0.1) ... 181s Selecting previously unselected package r-cran-pkgkitten. 181s Preparing to unpack .../170-r-cran-pkgkitten_0.2.4-1_all.deb ... 181s Unpacking r-cran-pkgkitten (0.2.4-1) ... 181s Selecting previously unselected package r-cran-rcpp. 181s Preparing to unpack .../171-r-cran-rcpp_1.0.14-1_amd64.deb ... 181s Unpacking r-cran-rcpp (1.0.14-1) ... 181s Selecting previously unselected package r-cran-later. 181s Preparing to unpack .../172-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 181s Unpacking r-cran-later (1.4.1+dfsg-1) ... 181s Selecting previously unselected package r-cran-magrittr. 181s Preparing to unpack .../173-r-cran-magrittr_2.0.3-1_amd64.deb ... 181s Unpacking r-cran-magrittr (2.0.3-1) ... 181s Selecting previously unselected package r-cran-promises. 181s Preparing to unpack .../174-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 181s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 181s Selecting previously unselected package r-cran-httpuv. 181s Preparing to unpack .../175-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 181s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 181s Selecting previously unselected package r-cran-xtable. 181s Preparing to unpack .../176-r-cran-xtable_1%3a1.8-4-2_all.deb ... 181s Unpacking r-cran-xtable (1:1.8-4-2) ... 181s Selecting previously unselected package r-cran-sourcetools. 181s Preparing to unpack .../177-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 181s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 181s Selecting previously unselected package r-cran-crayon. 181s 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.../183-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 181s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 181s Selecting previously unselected package r-cran-bookdown. 181s Preparing to unpack .../184-r-cran-bookdown_0.42+dfsg-1_all.deb ... 181s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 182s Selecting previously unselected package r-cran-biocmanager. 182s Preparing to unpack .../185-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 182s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 182s Selecting previously unselected package tex-common. 182s Preparing to unpack .../186-tex-common_6.19_all.deb ... 182s Unpacking tex-common (6.19) ... 182s Selecting previously unselected package t1utils. 182s Preparing to unpack .../187-t1utils_1.41-4build3_amd64.deb ... 182s Unpacking t1utils (1.41-4build3) ... 182s Selecting previously unselected package texlive-binaries. 182s Preparing to unpack .../188-texlive-binaries_2024.20240313.70630+ds-6_amd64.deb ... 182s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ... 182s Selecting previously unselected package texlive-base. 182s Preparing to unpack .../189-texlive-base_2024.20250114-1_all.deb ... 182s Unpacking texlive-base (2024.20250114-1) ... 183s Selecting previously unselected package texlive-latex-base. 183s Preparing to unpack .../190-texlive-latex-base_2024.20250114-1_all.deb ... 183s Unpacking texlive-latex-base (2024.20250114-1) ... 183s Selecting previously unselected package texlive-bibtex-extra. 183s Preparing to unpack .../191-texlive-bibtex-extra_2024.20250114-1_all.deb ... 183s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 185s Selecting previously unselected package r-bioc-biocversion. 185s Preparing to unpack .../192-r-bioc-biocversion_3.20.0-2_all.deb ... 185s Unpacking r-bioc-biocversion (3.20.0-2) ... 185s Selecting previously unselected package r-bioc-biocstyle. 185s Preparing to unpack .../193-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 185s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 185s Selecting previously unselected package r-cran-matrixstats. 185s Preparing to unpack .../194-r-cran-matrixstats_1.5.0-1_amd64.deb ... 185s Unpacking r-cran-matrixstats (1.5.0-1) ... 185s Selecting previously unselected package r-bioc-matrixgenerics. 185s Preparing to unpack .../195-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 185s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 185s Selecting previously unselected package r-cran-lattice. 185s Preparing to unpack .../196-r-cran-lattice_0.22-6-1_amd64.deb ... 185s Unpacking r-cran-lattice (0.22-6-1) ... 185s Selecting previously unselected package r-cran-matrix. 185s Preparing to unpack .../197-r-cran-matrix_1.7-3-1_amd64.deb ... 185s Unpacking r-cran-matrix (1.7-3-1) ... 186s Selecting previously unselected package r-bioc-sparsematrixstats. 186s Preparing to unpack .../198-r-bioc-sparsematrixstats_1.18.0+dfsg-2_amd64.deb ... 186s Unpacking r-bioc-sparsematrixstats (1.18.0+dfsg-2) ... 186s Selecting previously unselected package r-cran-utf8. 186s Preparing to unpack .../199-r-cran-utf8_1.2.4-1_amd64.deb ... 186s Unpacking r-cran-utf8 (1.2.4-1) ... 186s Selecting previously unselected package r-cran-vctrs. 186s Preparing to unpack .../200-r-cran-vctrs_0.6.5-1_amd64.deb ... 186s Unpacking r-cran-vctrs (0.6.5-1) ... 186s Selecting previously unselected package r-cran-pillar. 186s Preparing to unpack .../201-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 186s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 186s Selecting previously unselected package r-cran-profmem. 186s Preparing to unpack .../202-r-cran-profmem_0.6.0+dfsg-1_all.deb ... 186s Unpacking r-cran-profmem (0.6.0+dfsg-1) ... 186s Selecting previously unselected package r-cran-fansi. 186s Preparing to unpack .../203-r-cran-fansi_1.0.5-1_amd64.deb ... 186s Unpacking r-cran-fansi (1.0.5-1) ... 186s Selecting previously unselected package r-cran-pkgconfig. 186s Preparing to unpack .../204-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 186s Unpacking r-cran-pkgconfig 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(14.2.0-17ubuntu3) ... 188s Setting up cpp-14 (14.2.0-17ubuntu3) ... 188s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 188s Setting up libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 188s Setting up libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 188s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 188s Setting up libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 188s Setting up libsm6:amd64 (2:1.2.4-1) ... 188s Setting up cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 188s Setting up libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 188s Setting up fontconfig (2.15.0-2ubuntu1) ... 190s Regenerating fonts cache... done. 190s Setting up libxft2:amd64 (2.3.6-1build1) ... 190s Setting up libtk8.6:amd64 (8.6.16-1) ... 190s Setting up libpango-1.0-0:amd64 (1.56.2-1) ... 190s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 190s Setting up libcairo2:amd64 (1.18.2-2) ... 190s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ... 190s Setting up cpp (4:14.2.0-1ubuntu1) ... 190s Setting up gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 190s Setting up libpangoft2-1.0-0:amd64 (1.56.2-1) ... 190s Setting up libpangocairo-1.0-0:amd64 (1.56.2-1) ... 190s Setting up libxmu6:amd64 (2:1.1.3-3build2) ... 190s Setting up gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 190s Setting up libxaw7:amd64 (2:1.0.16-1) ... 190s Setting up gcc-14 (14.2.0-17ubuntu3) ... 190s Setting up gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 190s Setting up r-base-core (4.4.3-1) ... 190s Creating config file /etc/R/Renviron with new version 190s Setting up r-cran-crayon (1.5.3-1) ... 190s Setting up r-cran-sourcetools (0.1.7-1-1) ... 190s Setting up r-cran-lattice (0.22-6-1) ... 190s Setting up r-cran-ps (1.9.0-1) ... 190s Setting up g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 190s Setting up texlive-binaries (2024.20240313.70630+ds-6) ... 190s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 190s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 190s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 190s Setting up r-cran-commonmark (1.9.2-2) ... 190s Setting up g++-14 (14.2.0-17ubuntu3) ... 190s Setting up r-cran-r6 (2.6.1-1) ... 190s Setting up r-cran-pkgkitten (0.2.4-1) ... 190s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 190s Setting up texlive-base (2024.20250114-1) ... 191s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 191s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 191s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 191s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 192s Setting up r-cran-magrittr (2.0.3-1) ... 192s Setting up r-cran-rappdirs (0.3.3-1) ... 192s Setting up r-cran-littler (0.3.20-2) ... 192s Setting up r-cran-fs (1.6.5+dfsg-1) ... 192s Setting up r-cran-rcpp (1.0.14-1) ... 192s Setting up r-cran-profmem (0.6.0+dfsg-1) ... 192s Setting up r-cran-brio (1.1.5-1) ... 192s Setting up r-cran-diffobj (0.3.5-1) ... 192s Setting up r-bioc-biocgenerics (0.52.0-2) ... 192s Setting up r-cran-rlang (1.1.5-1) ... 192s Setting up r-cran-matrixstats (1.5.0-1) ... 192s Setting up littler (0.3.20-2) ... 192s Setting up r-bioc-matrixgenerics (1.18.1-1) ... 192s Setting up r-cran-xfun (0.51+dfsg-1) ... 192s Setting up r-cran-withr (3.0.2+dfsg-1) ... 192s Setting up r-cran-processx (3.8.6-1) ... 192s Setting up r-cran-mime (0.12-2) ... 192s Setting up r-cran-praise (1.0.0-4build1) ... 192s Setting up r-cran-base64enc (0.1-3-3) ... 192s Setting up r-cran-digest (0.6.37-1) ... 192s Setting up r-cran-yaml (2.3.10-1) ... 192s Setting up r-cran-evaluate (1.0.3-1) ... 192s Setting up r-cran-highr (0.11+dfsg-1) ... 192s Setting up r-cran-fansi (1.0.5-1) ... 192s Setting up r-cran-glue (1.8.0-1) ... 192s Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 192s Setting up r-cran-xtable (1:1.8-4-2) ... 192s Setting up r-cran-cli (3.6.4-1) ... 192s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 192s Setting up r-bioc-biocversion (3.20.0-2) ... 192s Setting up r-cran-rprojroot (2.0.4-2) ... 192s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 192s Setting up gcc (4:14.2.0-1ubuntu1) ... 192s Setting up r-cran-fastmap (1.2.0-1) ... 192s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 192s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 192s Setting up r-cran-utf8 (1.2.4-1) ... 192s Setting up texlive-latex-base (2024.20250114-1) ... 192s Setting up r-cran-waldo (0.6.1-2) ... 192s Setting up r-cran-later (1.4.1+dfsg-1) ... 192s Setting up r-cran-matrix (1.7-3-1) ... 192s Setting up r-cran-htmltools (0.5.8.1-1) ... 192s Setting up r-cran-tinytex (0.56-1) ... 192s Setting up r-cran-knitr (1.49+dfsg-1) ... 192s Setting up g++ (4:14.2.0-1ubuntu1) ... 192s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 192s Setting up r-cran-cachem (1.1.0-1) ... 192s Setting up r-cran-sass (0.4.9+dfsg-1) ... 192s Setting up build-essential (12.10ubuntu1) ... 192s Setting up r-bioc-sparsematrixstats (1.18.0+dfsg-2) ... 192s Setting up r-cran-vctrs (0.6.5-1) ... 192s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 192s Setting up r-cran-callr (3.7.6-1) ... 192s Setting up r-cran-desc (1.4.3-1) ... 192s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 192s Setting up r-cran-fontawesome (0.5.3-1) ... 192s Setting up gfortran (4:14.2.0-1ubuntu1) ... 192s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 192s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 192s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 192s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 192s Setting up r-cran-bench (1.1.4-1) ... 192s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 192s Setting up texlive-bibtex-extra (2024.20250114-1) ... 192s Setting up r-cran-memoise (2.0.1-1) ... 192s Setting up r-cran-promises (1.3.2+dfsg-1) ... 192s Setting up r-cran-pkgbuild (1.4.6-1) ... 192s Setting up r-cran-pkgload (1.4.0-1) ... 192s Setting up r-base-dev (4.4.3-1) ... 192s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 192s Setting up r-cran-testthat (3.2.3-1) ... 192s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 192s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 192s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 192s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 192s Setting up r-cran-bookdown (0.42+dfsg-1) ... 192s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 192s Processing triggers for libc-bin (2.41-1ubuntu2) ... 192s Processing triggers for man-db (2.13.0-1) ... 194s Processing triggers for install-info (7.1.1-1) ... 194s Processing triggers for tex-common (6.19) ... 194s Running updmap-sys. This may take some time... done. 194s Running mktexlsr /var/lib/texmf ... done. 194s Building format(s) --all. 224s This may take some time... done. 225s autopkgtest [22:05:08]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 225s autopkgtest [22:05:08]: test pkg-r-autopkgtest: [----------------------- 225s Test: Try to load the R library sparseMatrixStats 225s 225s R version 4.4.3 (2025-02-28) -- "Trophy Case" 225s Copyright (C) 2025 The R Foundation for Statistical Computing 225s Platform: x86_64-pc-linux-gnu 225s 225s R is free software and comes with ABSOLUTELY NO WARRANTY. 225s You are welcome to redistribute it under certain conditions. 225s Type 'license()' or 'licence()' for distribution details. 225s 225s R is a collaborative project with many contributors. 225s Type 'contributors()' for more information and 225s 'citation()' on how to cite R or R packages in publications. 225s 225s Type 'demo()' for some demos, 'help()' for on-line help, or 225s 'help.start()' for an HTML browser interface to help. 225s Type 'q()' to quit R. 225s 225s Loading required package: MatrixGenerics 225s > library('sparseMatrixStats') 225s Loading required package: matrixStats 225s 225s Attaching package: ‘MatrixGenerics’ 225s 225s The following objects are masked from ‘package:matrixStats’: 225s 225s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 225s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 225s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 225s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 225s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 225s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 225s colWeightedMeans, colWeightedMedians, colWeightedSds, 225s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 225s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 225s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 225s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 225s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 225s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 225s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 225s rowWeightedSds, rowWeightedVars 225s 226s > 226s > 226s Other tests are currently unsupported! 226s They will be progressively added. 227s autopkgtest [22:05:10]: test pkg-r-autopkgtest: -----------------------] 227s pkg-r-autopkgtest PASS 227s autopkgtest [22:05:10]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 227s autopkgtest [22:05:10]: @@@@@@@@@@@@@@@@@@@@ summary 227s pkg-r-autopkgtest PASS 243s nova [W] Skipping flock for amd64 243s Creating nova instance adt-plucky-amd64-r-bioc-sparsematrixstats-20250315-220122-juju-7f2275-prod-proposed-migration-environment-15-0b1762cd-61a5-454e-a287-e828eb21f1fa from image adt/ubuntu-plucky-amd64-server-20250306.img (UUID 60d877d7-b74c-4f24-920d-f4570db0a338)... 243s nova [W] Timed out waiting for 87ba38b1-ab49-4230-9b05-601bf9dd5815 to get deleted.