0s autopkgtest [20:42:12]: starting date and time: 2025-03-15 20:42:12+0000 0s autopkgtest [20:42:12]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [20:42:12]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.njp4sepv/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-sparsearray --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-5.secgroup --name adt-plucky-amd64-r-bioc-sparsearray-20250315-204212-juju-7f2275-prod-proposed-migration-environment-2-d10ac8be-1eaa-4d47-bd95-7cab3a3de9ca --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 52s autopkgtest [20:43:04]: testbed dpkg architecture: amd64 52s autopkgtest [20:43:04]: testbed apt version: 2.9.31ubuntu1 52s autopkgtest [20:43:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 52s autopkgtest [20:43:04]: testbed release detected to be: None 52s autopkgtest [20:43:04]: updating testbed package index (apt update) 52s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 52s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 52s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 53s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 53s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 53s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 53s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [45.1 kB] 53s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [62.1 kB] 53s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [86.6 kB] 53s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1884 B] 53s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 53s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [166 kB] 53s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [330 kB] 53s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.6 kB] 53s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 53s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 53s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 53s Fetched 1242 kB in 0s (5473 kB/s) 54s Reading package lists... 54s Reading package lists... 54s Building dependency tree... 54s Reading state information... 55s Calculating upgrade... 55s Calculating upgrade... 55s The following package was automatically installed and is no longer required: 55s libnl-genl-3-200 55s Use 'sudo apt autoremove' to remove it. 55s The following NEW packages will be installed: 55s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 55s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 55s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 55s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 55s The following packages will be upgraded: 55s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 55s cloud-init cloud-init-base curl dosfstools fwupd gir1.2-girepository-2.0 55s gir1.2-glib-2.0 htop hwdata libapparmor1 libapt-pkg7.0 libaudit-common 55s libaudit1 libbinutils libbrotli1 libcap-ng0 libctf-nobfd0 libctf0 55s libcurl3t64-gnutls libcurl4t64 libestr0 libfwupd3 libgirepository-1.0-1 55s libglib2.0-0t64 libglib2.0-data libgprofng0 libjemalloc2 liblz4-1 liblzma5 55s libmm-glib0 libncurses6 libncursesw6 libnl-3-200 libnl-genl-3-200 55s libnl-route-3-200 libpci3 libpython3-stdlib libpython3.13 55s libpython3.13-minimal libpython3.13-stdlib libselinux1 libsframe1 55s libsqlite3-0 libtinfo6 libxml2 linux-firmware linux-generic 55s linux-headers-generic linux-headers-virtual linux-image-generic 55s linux-image-virtual linux-libc-dev linux-tools-common linux-virtual 55s media-types ncurses-base ncurses-bin ncurses-term pci.ids pciutils 55s pinentry-curses python-apt-common python3 python3-apt python3-cffi-backend 55s python3-dbus python3-gi python3-jinja2 python3-lazr.uri python3-markupsafe 55s python3-minimal python3-systemd python3-yaml python3.13 python3.13-gdbm 55s python3.13-minimal rsync rsyslog strace xz-utils 55s 86 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 55s Need to get 807 MB of archives. 55s After this operation, 326 MB of additional disk space will be used. 55s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 55s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 55s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 55s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 55s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 55s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 55s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 55s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 55s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 55s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 55s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 56s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 56s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 56s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 56s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 56s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 56s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 56s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 56s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 56s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 56s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 56s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 56s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 56s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 56s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 56s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 56s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 56s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 56s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 56s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 56s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 56s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 56s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 56s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 56s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 56s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 56s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 56s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 56s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 56s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 56s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 56s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 56s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 56s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 56s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 56s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 56s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 56s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 56s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 56s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 56s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 56s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 56s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 56s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 56s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 56s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 56s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 56s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 56s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 56s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 56s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 56s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 56s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 56s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 56s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 56s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 56s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 56s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 56s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 56s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 56s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 56s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 56s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 57s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 57s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 57s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 57s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 57s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 64s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 65s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 65s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 65s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 65s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 65s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 65s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 65s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 65s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 66s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 66s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 66s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 66s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 66s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 66s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 66s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 66s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 66s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 66s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 66s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 66s Preconfiguring packages ... 66s Fetched 807 MB in 10s (77.4 MB/s) 66s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 66s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ... 66s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ... 66s Setting up ncurses-bin (6.5+20250216-2) ... 66s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 66s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... 66s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ... 67s Setting up ncurses-base (6.5+20250216-2) ... 67s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 67s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ... 67s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ... 67s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ... 67s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ... 67s Setting up liblz4-1:amd64 (1.10.0-4) ... 67s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 67s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ... 67s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ... 67s Setting up liblzma5:amd64 (5.6.4-1) ... 67s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 67s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 67s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 67s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 67s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 67s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 68s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 68s Setting up apt (2.9.33) ... 68s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 68s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 68s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 68s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 68s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 68s Setting up python3-minimal (3.13.2-2) ... 69s (Reading database ... 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Preparing to unpack .../68-python3-systemd_235-1build6_amd64.deb ... 83s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 84s Preparing to unpack .../69-python3.13-gdbm_3.13.2-2_amd64.deb ... 84s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 84s Preparing to unpack .../70-cloud-init_25.1-0ubuntu3_all.deb ... 84s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 84s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 84s Setting up media-types (13.0.0) ... 84s Installing new version of config file /etc/mime.types ... 84s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 84s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 84s Setting up pci.ids (0.0~2025.03.09-1) ... 84s Setting up apt-utils (2.9.33) ... 84s Setting up libdebuginfod-common (0.192-4) ... 84s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 84s Setting up bpftool (7.6.0+6.14.0-10.10) ... 84s Setting up libestr0:amd64 (0.1.11-2) ... 84s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 84s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 84s Setting up dosfstools (4.2-1.2) ... 84s Setting up rsyslog (8.2412.0-2ubuntu2) ... 84s info: The user `syslog' is already a member of `adm'. 85s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 85s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 85s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 85s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 85s Setting up linux-headers-generic (6.14.0-10.10) ... 85s Setting up libjemalloc2:amd64 (5.3.0-3) ... 85s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 85s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 85s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 85s Installing new version of config file /etc/apparmor.d/openvpn ... 86s Reloading AppArmor profiles 87s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 87s No schema files found: doing nothing. 87s Setting up libglib2.0-data (2.84.0-1) ... 87s Setting up libncurses6:amd64 (6.5+20250216-2) ... 87s Setting up strace (6.13+ds-1ubuntu1) ... 87s Setting up xz-utils (5.6.4-1) ... 87s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 87s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 89s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 89s Setting up libpci3:amd64 (1:3.13.0-2) ... 89s Setting up python-apt-common (2.9.9build1) ... 89s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 89s Setting up pnp.ids (0.393-3) ... 89s Setting up libnl-3-200:amd64 (3.7.0-1) ... 89s Setting up python3.13-minimal (3.13.2-2) ... 90s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 90s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 90s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 90s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 90s Setting up rsync (3.4.1+ds1-3) ... 91s rsync.service is a disabled or a static unit not running, not starting it. 91s Setting up python3.13-gdbm (3.13.2-2) ... 91s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 91s Setting up ncurses-term (6.5+20250216-2) ... 91s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 91s Setting up libpython3.13:amd64 (3.13.2-2) ... 91s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 91s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 91s Setting up linux-headers-virtual (6.14.0-10.10) ... 91s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 91s Setting up python3.13 (3.13.2-2) ... 92s Setting up htop (3.4.0-2) ... 92s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 94s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 94s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 94s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 94s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 94s Setting up libfwupd3:amd64 (2.0.6-4) ... 94s Setting up python3 (3.13.2-2) ... 94s Setting up python3-markupsafe (2.1.5-1build4) ... 94s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 96s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 96s Setting up hwdata (0.393-3) ... 96s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 96s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 96s Setting up linux-perf (6.14.0-10.10) ... 96s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 96s Setting up python3-gi (3.50.0-4build1) ... 96s Setting up pciutils (1:3.13.0-2) ... 96s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 96s Setting up curl (8.12.1-3ubuntu1) ... 96s Setting up linux-image-virtual (6.14.0-10.10) ... 96s Setting up linux-tools-common (6.14.0-10.10) ... 96s Setting up fwupd (2.0.6-4) ... 97s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 97s fwupd.service is a disabled or a static unit not running, not starting it. 97s Setting up python3-systemd (235-1build6) ... 97s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 97s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 97s Setting up linux-image-generic (6.14.0-10.10) ... 97s Setting up python3-dbus (1.3.2-5build5) ... 97s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 97s Setting up linux-generic (6.14.0-10.10) ... 97s Setting up python3-apt (2.9.9build1) ... 97s Setting up python3-yaml (6.0.2-1build2) ... 98s Setting up python3-lazr.uri (1.0.6-6) ... 98s Setting up binutils (2.44-3ubuntu1) ... 98s Setting up cloud-init-base (25.1-0ubuntu3) ... 99s Setting up linux-virtual (6.14.0-10.10) ... 99s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 99s Setting up cloud-init (25.1-0ubuntu3) ... 99s Processing triggers for systemd (257.3-1ubuntu3) ... 99s Processing triggers for man-db (2.13.0-1) ... 101s Processing triggers for dbus (1.16.2-1ubuntu1) ... 101s Processing triggers for libc-bin (2.41-1ubuntu1) ... 101s Processing triggers for initramfs-tools (0.146ubuntu1) ... 101s update-initramfs: Generating /boot/initrd.img-6.12.0-16-generic 101s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 111s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 111s /etc/kernel/postinst.d/initramfs-tools: 111s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 111s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 121s /etc/kernel/postinst.d/zz-update-grub: 121s Sourcing file `/etc/default/grub' 121s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 121s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 121s Generating grub configuration file ... 121s Found linux image: /boot/vmlinuz-6.14.0-10-generic 121s Found initrd image: /boot/initrd.img-6.14.0-10-generic 121s Found linux image: /boot/vmlinuz-6.12.0-16-generic 121s Found initrd image: /boot/initrd.img-6.12.0-16-generic 121s Found linux image: /boot/vmlinuz-6.11.0-8-generic 121s Found initrd image: /boot/initrd.img-6.11.0-8-generic 121s Warning: os-prober will not be executed to detect other bootable partitions. 121s Systems on them will not be added to the GRUB boot configuration. 121s Check GRUB_DISABLE_OS_PROBER documentation entry. 121s Adding boot menu entry for UEFI Firmware Settings ... 121s done 122s Reading package lists... 123s Building dependency tree... 123s Reading state information... 123s Solving dependencies... 123s The following packages will be REMOVED: 123s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 123s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 123s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 123s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 123s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 123s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 123s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 123s linux-tools-6.12.0-16-generic* 123s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 123s After this operation, 545 MB disk space will be freed. 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 123s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 123s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 123s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 123s Removing libpython3.12t64:amd64 (3.12.9-1) ... 123s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 123s Removing libnsl2:amd64 (1.3.0-3build3) ... 123s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 124s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 124s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 126s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 127s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 128s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 129s /etc/kernel/postrm.d/initramfs-tools: 129s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 129s /etc/kernel/postrm.d/zz-update-grub: 129s Sourcing file `/etc/default/grub' 129s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 129s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 129s Generating grub configuration file ... 129s Found linux image: /boot/vmlinuz-6.14.0-10-generic 129s Found initrd image: /boot/initrd.img-6.14.0-10-generic 129s Found linux image: /boot/vmlinuz-6.12.0-16-generic 129s Found initrd image: /boot/initrd.img-6.12.0-16-generic 129s Warning: os-prober will not be executed to detect other bootable partitions. 129s Systems on them will not be added to the GRUB boot configuration. 129s Check GRUB_DISABLE_OS_PROBER documentation entry. 129s Adding boot menu entry for UEFI Firmware Settings ... 129s done 129s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 129s W: Removing the running kernel 129s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 129s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 129s /etc/kernel/postrm.d/initramfs-tools: 129s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 129s /etc/kernel/postrm.d/zz-update-grub: 130s Sourcing file `/etc/default/grub' 130s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 130s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 130s Generating grub configuration file ... 130s Found linux image: /boot/vmlinuz-6.14.0-10-generic 130s Found initrd image: /boot/initrd.img-6.14.0-10-generic 130s Warning: os-prober will not be executed to detect other bootable partitions. 130s Systems on them will not be added to the GRUB boot configuration. 130s Check GRUB_DISABLE_OS_PROBER documentation entry. 130s Adding boot menu entry for UEFI Firmware Settings ... 130s done 130s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 130s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 131s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 132s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 132s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 132s Processing triggers for libc-bin (2.41-1ubuntu1) ... 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 132s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 132s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 132s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 132s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 132s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 132s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 132s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 132s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 132s autopkgtest [20:44:24]: upgrading testbed (apt dist-upgrade and autopurge) 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 133s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 133s Starting 2 pkgProblemResolver with broken count: 0 133s Done 133s Entering ResolveByKeep 133s 134s Calculating upgrade... 134s The following packages will be upgraded: 134s libc-bin libc-dev-bin libc6 libc6-dev locales 134s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 134s Need to get 10.5 MB of archives. 134s After this operation, 1024 B of additional disk space will be used. 134s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 134s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 134s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 134s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 134s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 134s Preconfiguring packages ... 134s Fetched 10.5 MB in 0s (40.1 MB/s) 134s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 134s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 134s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 135s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 135s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 135s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 135s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 135s Setting up libc6:amd64 (2.41-1ubuntu2) ... 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 135s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 135s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 135s Setting up libc-bin (2.41-1ubuntu2) ... 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 135s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 135s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 135s Setting up locales (2.41-1ubuntu2) ... 136s Generating locales (this might take a while)... 137s en_US.UTF-8... done 137s Generation complete. 137s Setting up libc-dev-bin (2.41-1ubuntu2) ... 137s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 137s Processing triggers for man-db (2.13.0-1) ... 138s Processing triggers for systemd (257.3-1ubuntu3) ... 139s Reading package lists... 139s Building dependency tree... 139s Reading state information... 139s Starting pkgProblemResolver with broken count: 0 139s Starting 2 pkgProblemResolver with broken count: 0 139s Done 140s Solving dependencies... 140s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 140s autopkgtest [20:44:32]: rebooting testbed after setup commands that affected boot 144s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 155s autopkgtest [20:44:47]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 156s autopkgtest [20:44:48]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-sparsearray 157s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-sparsearray 1.6.2+dfsg-1 (dsc) [2342 B] 157s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-sparsearray 1.6.2+dfsg-1 (tar) [175 kB] 157s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-sparsearray 1.6.2+dfsg-1 (diff) [5584 B] 157s gpgv: Signature made Mon Mar 10 04:26:53 2025 UTC 157s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 157s gpgv: issuer "plessy@debian.org" 157s gpgv: Can't check signature: No public key 157s dpkg-source: warning: cannot verify inline signature for ./r-bioc-sparsearray_1.6.2+dfsg-1.dsc: no acceptable signature found 157s autopkgtest [20:44:49]: testing package r-bioc-sparsearray version 1.6.2+dfsg-1 158s autopkgtest [20:44:50]: build not needed 162s autopkgtest [20:44:54]: test pkg-r-autopkgtest: preparing testbed 162s Reading package lists... 163s Building dependency tree... 163s Reading state information... 163s Starting pkgProblemResolver with broken count: 0 163s Starting 2 pkgProblemResolver with broken count: 0 163s Done 164s The following NEW packages will be installed: 164s build-essential comerr-dev cpp cpp-14 cpp-14-x86-64-linux-gnu 164s cpp-x86-64-linux-gnu dctrl-tools fontconfig fontconfig-config 164s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 164s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-14 164s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 164s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 164s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu hdf5-helpers 164s icu-devtools javascript-common krb5-multidev libaec-dev libaec0 libasan8 164s libbibtex-parser-perl libblas-dev libblas3 libblosc1 libbrotli-dev 164s libbz2-dev libcairo2 libcc1-0 libcurl4-openssl-dev libdatrie1 libdeflate-dev 164s libdeflate0 libevent-2.1-7t64 libfontconfig1 libgcc-14-dev 164s libgfortran-14-dev libgfortran5 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 164s libgnutls-openssl27t64 libgnutls28-dev libgomp1 libgraphite2-3 libgssrpc4t64 164s libharfbuzz0b libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 164s libhdf5-hl-310 libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libhwasan0 libice6 164s libicu-dev libidn2-dev libio-string-perl libisl23 libitm1 libjbig0 164s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 164s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 164s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 164s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 164s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 164s libjs-twitter-bootstrap-datepicker libkadm5clnt-mit12 libkadm5srv-mit12 164s libkdb5-10t64 libkpathsea6 libkrb5-dev liblapack-dev liblapack3 164s liblatex-tounicode-perl libldap-dev liblerc4 liblsan0 liblua5.4-0 164s liblzma-dev libmpc3 libmpfi0 libncurses-dev libnghttp2-dev libp11-kit-dev 164s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 164s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 164s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl-dev libptexenc1 164s libquadmath0 libreadline-dev librtmp-dev libsharpyuv0 libsm6 libsnappy1v5 164s libssh2-1-dev libssl-dev libstdc++-14-dev libsynctex2 libsz2 libtasn1-6-dev 164s libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 164s libtirpc-dev libtk8.6 libtsan2 libubsan1 libunbound8 libwebp7 libxaw7 164s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 164s libxss1 libxt6t64 libzstd-dev libzzip-0-13t64 littler nettle-dev 164s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 164s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 164s r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase 164s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biocversion 164s r-bioc-biostrings r-bioc-delayedarray r-bioc-experimenthub 164s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-hdf5array r-bioc-iranges 164s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters 164s r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 164s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass 164s r-cran-base64enc r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-blob 164s r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 164s r-cran-cli r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 164s r-cran-dbi r-cran-dbplyr r-cran-desc r-cran-diffobj r-cran-digest 164s r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-filelock 164s r-cran-fontawesome r-cran-fs r-cran-generics r-cran-glue r-cran-highr 164s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite 164s r-cran-knitr r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 164s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 164s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 164s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 164s r-cran-processx r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 164s r-cran-rappdirs r-cran-rcpp r-cran-rlang r-cran-rmarkdown r-cran-rprojroot 164s r-cran-rsqlite r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-stringi 164s r-cran-stringr r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr 164s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-waldo 164s r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml t1utils tex-common 164s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 164s x11-common xdg-utils zip zlib1g-dev 164s 0 upgraded, 300 newly installed, 0 to remove and 0 not upgraded. 164s Need to get 425 MB of archives. 164s After this operation, 1221 MB of additional disk space will be used. 164s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 164s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 164s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 164s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 164s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 164s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 164s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 164s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 164s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 164s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 164s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 164s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 164s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 164s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 164s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 164s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 164s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 164s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 164s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 164s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 164s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 164s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 164s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 164s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 164s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 164s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 164s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 164s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 164s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 164s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 164s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 164s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 164s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 164s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 164s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 164s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 164s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 164s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 164s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 165s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 165s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 165s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 165s Get:43 http://ftpmaster.internal/ubuntu plucky/universe amd64 hdf5-helpers amd64 1.14.5+repack-3 [17.0 kB] 165s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 165s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 165s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 comerr-dev amd64 2.1-1.47.2-1ubuntu1 [44.9 kB] 165s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libgssrpc4t64 amd64 1.21.3-4ubuntu2 [58.1 kB] 165s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libkadm5clnt-mit12 amd64 1.21.3-4ubuntu2 [41.3 kB] 165s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libkdb5-10t64 amd64 1.21.3-4ubuntu2 [42.0 kB] 165s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libkadm5srv-mit12 amd64 1.21.3-4ubuntu2 [55.5 kB] 165s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 krb5-multidev amd64 1.21.3-4ubuntu2 [125 kB] 165s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 165s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 165s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 165s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 165s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 165s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 165s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB] 165s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB] 165s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli-dev amd64 1.1.0-2build4 [381 kB] 165s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 165s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 165s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 165s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 165s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 165s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 165s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libidn2-dev amd64 2.3.7-2build2 [120 kB] 165s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libkrb5-dev amd64 1.21.3-4ubuntu2 [11.9 kB] 165s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libldap-dev amd64 2.6.9+dfsg-1~exp2ubuntu1 [335 kB] 165s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 165s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 165s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 165s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libnghttp2-dev amd64 1.64.0-1 [123 kB] 165s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libpsl-dev amd64 0.21.2-1.1build1 [76.4 kB] 165s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3ubuntu1 [10.0 kB] 165s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3ubuntu1 [341 kB] 165s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10 [144 kB] 165s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libunbound8 amd64 1.22.0-1ubuntu1 [519 kB] 165s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-dane0t64 amd64 3.8.9-2ubuntu2 [24.4 kB] 165s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2ubuntu2 [24.6 kB] 165s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libp11-kit-dev amd64 0.25.5-2ubuntu3 [23.5 kB] 165s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libtasn1-6-dev amd64 4.20.0-2 [98.1 kB] 165s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 nettle-dev amd64 3.10.1-1 [1187 kB] 165s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls28-dev amd64 3.8.9-2ubuntu2 [1118 kB] 165s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 165s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2build7 [66.7 kB] 165s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libssl-dev amd64 3.4.1-1ubuntu1 [2873 kB] 165s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libssh2-1-dev amd64 1.11.1-1 [292 kB] 165s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [444 kB] 165s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4-openssl-dev amd64 8.12.1-3ubuntu1 [522 kB] 165s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 165s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 165s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 165s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 165s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 165s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 165s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 165s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-cpp-310 amd64 1.14.5+repack-3 [129 kB] 165s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-fortran-310 amd64 1.14.5+repack-3 [108 kB] 165s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 165s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-3 [32.4 kB] 165s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-3 [11.7 kB] 165s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 165s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 165s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 165s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 165s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 165s Get:108 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec-dev amd64 1.1.3-1 [19.8 kB] 165s Get:109 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-dev amd64 1.14.5+repack-3 [3505 kB] 165s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 165s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 165s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 165s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 165s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 165s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 165s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 165s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 165s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 165s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 165s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 165s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 165s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 165s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 165s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 165s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 165s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 165s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 165s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-5build2 [67.0 kB] 165s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 165s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 165s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 165s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 165s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 165s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 165s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 165s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 165s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 165s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 165s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 165s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 165s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 165s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 165s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 165s Get:144 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 165s Get:145 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 165s Get:146 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 165s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 165s Get:148 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-5build2 [43.7 kB] 165s Get:149 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 165s Get:150 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 165s Get:151 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 165s Get:152 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-5build2 [62.5 kB] 165s Get:153 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 165s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 165s Get:155 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-5build2 [145 kB] 165s Get:156 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 165s Get:157 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 165s Get:158 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 165s Get:159 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 165s Get:160 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 165s Get:161 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 165s Get:162 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 165s Get:163 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 165s Get:164 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 165s Get:165 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 165s Get:166 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 165s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 165s Get:168 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 165s Get:169 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 165s Get:170 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 165s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 165s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 165s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 165s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 165s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 165s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 165s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 165s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 166s Get:179 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 166s Get:180 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 166s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 166s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 166s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 166s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 166s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 166s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 166s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 166s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 166s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB] 166s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 166s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 166s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 166s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 166s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 166s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 166s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 166s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 166s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 166s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 166s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 166s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 166s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 166s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 166s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 166s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 166s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 166s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 166s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 166s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 166s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 166s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 166s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 166s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 166s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 166s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 166s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 166s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 166s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 166s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 166s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 166s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 166s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 166s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 166s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 166s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 166s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 166s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 166s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 166s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 166s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 166s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 166s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 166s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 166s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbplyr all 2.5.0+dfsg-1 [1233 kB] 166s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 166s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 166s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 166s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 166s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 166s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 166s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationhub all 3.14.0+dfsg-2 [447 kB] 166s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 166s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 166s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 166s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 166s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 166s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 166s Get:248 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 166s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 166s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 166s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 166s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 166s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 166s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 166s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 166s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 166s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 166s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 166s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 166s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 166s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 166s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 166s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 166s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 166s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 166s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 166s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 166s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 166s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB] 166s Get:270 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 166s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-5build2 [9799 kB] 166s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB] 167s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB] 167s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 167s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 167s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 167s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 167s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 167s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 167s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 167s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 167s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1392 kB] 167s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 167s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-experimenthub all 2.14.0+ds-2 [84.6 kB] 167s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5lib amd64 1.28.0+dfsg-2build1 [97.4 kB] 167s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5filters amd64 1.18.0+dfsg-2 [137 kB] 167s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5 amd64 2.50.2+dfsg-1build1 [822 kB] 167s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-hdf5array amd64 1.34.0-2build1 [8792 kB] 167s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 167s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 167s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 167s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 167s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 167s Get:294 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 167s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 167s Get:296 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] 167s Get:297 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 167s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 167s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-2 [150 kB] 167s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 168s Preconfiguring packages ... 168s Fetched 425 MB in 4s (114 MB/s) 168s Selecting previously unselected package libisl23:amd64. 168s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 168s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 168s Unpacking libisl23:amd64 (0.27-1) ... 168s Selecting previously unselected package libmpc3:amd64. 168s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 168s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 168s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 168s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 168s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 169s Selecting previously unselected package cpp-14. 169s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 169s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 169s Selecting previously unselected package cpp-x86-64-linux-gnu. 169s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 169s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 169s Selecting previously unselected package cpp. 169s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 169s Unpacking cpp (4:14.2.0-1ubuntu1) ... 169s Selecting previously unselected package libcc1-0:amd64. 169s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 169s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 169s Selecting previously unselected package libgomp1:amd64. 169s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 169s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 169s Selecting previously unselected package libitm1:amd64. 169s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 169s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 169s Selecting previously unselected package libasan8:amd64. 169s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 169s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 169s Selecting previously unselected package liblsan0:amd64. 169s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 169s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 169s Selecting previously unselected package libtsan2:amd64. 169s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 169s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 169s Selecting previously unselected package libubsan1:amd64. 169s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 169s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 169s Selecting previously unselected package libhwasan0:amd64. 169s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 169s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 169s Selecting previously unselected package libquadmath0:amd64. 169s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 169s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 169s Selecting previously unselected package libgcc-14-dev:amd64. 169s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 169s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 169s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 169s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 169s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 170s Selecting previously unselected package gcc-14. 170s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 170s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 170s Selecting previously unselected package gcc-x86-64-linux-gnu. 170s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 170s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 170s Selecting previously unselected package gcc. 170s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 170s Unpacking gcc (4:14.2.0-1ubuntu1) ... 170s Selecting previously unselected package libstdc++-14-dev:amd64. 170s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 170s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 170s Selecting previously unselected package g++-14-x86-64-linux-gnu. 170s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 170s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 170s Selecting previously unselected package g++-14. 170s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ... 170s Unpacking g++-14 (14.2.0-17ubuntu3) ... 170s Selecting previously unselected package g++-x86-64-linux-gnu. 170s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 170s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 170s Selecting previously unselected package g++. 170s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 170s Unpacking g++ (4:14.2.0-1ubuntu1) ... 170s Selecting previously unselected package build-essential. 170s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 170s Unpacking build-essential (12.10ubuntu1) ... 170s Selecting previously unselected package dctrl-tools. 170s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 170s Unpacking dctrl-tools (2.24-3build3) ... 170s Selecting previously unselected package fonts-dejavu-mono. 170s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 170s Unpacking fonts-dejavu-mono (2.37-8) ... 170s Selecting previously unselected package fonts-dejavu-core. 170s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 170s Unpacking fonts-dejavu-core (2.37-8) ... 170s Selecting previously unselected package fontconfig-config. 170s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 171s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 171s Selecting previously unselected package libfontconfig1:amd64. 171s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 171s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 171s Selecting previously unselected package fontconfig. 171s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 171s Unpacking fontconfig (2.15.0-2ubuntu1) ... 171s Selecting previously unselected package fonts-font-awesome. 171s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 171s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 171s Selecting previously unselected package fonts-glyphicons-halflings. 171s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 171s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 171s Selecting previously unselected package fonts-lmodern. 171s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ... 171s Unpacking fonts-lmodern (2.005-1) ... 171s Selecting previously unselected package fonts-mathjax. 171s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 171s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 171s Selecting previously unselected package libgfortran5:amd64. 171s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 171s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 171s Selecting previously unselected package libgfortran-14-dev:amd64. 171s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 171s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 171s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 171s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 171s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 171s Selecting previously unselected package gfortran-14. 171s Preparing to unpack .../039-gfortran-14_14.2.0-17ubuntu3_amd64.deb ... 171s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 171s Selecting previously unselected package gfortran-x86-64-linux-gnu. 171s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 171s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 171s Selecting previously unselected package gfortran. 171s Preparing to unpack .../041-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 171s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 171s Selecting previously unselected package hdf5-helpers. 171s Preparing to unpack .../042-hdf5-helpers_1.14.5+repack-3_amd64.deb ... 171s Unpacking hdf5-helpers (1.14.5+repack-3) ... 171s Selecting previously unselected package icu-devtools. 171s Preparing to unpack .../043-icu-devtools_76.1-1ubuntu2_amd64.deb ... 171s Unpacking icu-devtools (76.1-1ubuntu2) ... 171s Selecting previously unselected package javascript-common. 171s Preparing to unpack .../044-javascript-common_12_all.deb ... 171s Unpacking javascript-common (12) ... 171s Selecting previously unselected package comerr-dev:amd64. 171s Preparing to unpack .../045-comerr-dev_2.1-1.47.2-1ubuntu1_amd64.deb ... 171s Unpacking comerr-dev:amd64 (2.1-1.47.2-1ubuntu1) ... 171s Selecting previously unselected package libgssrpc4t64:amd64. 172s Preparing to unpack .../046-libgssrpc4t64_1.21.3-4ubuntu2_amd64.deb ... 172s Unpacking libgssrpc4t64:amd64 (1.21.3-4ubuntu2) ... 172s Selecting previously unselected package libkadm5clnt-mit12:amd64. 172s Preparing to unpack .../047-libkadm5clnt-mit12_1.21.3-4ubuntu2_amd64.deb ... 172s Unpacking libkadm5clnt-mit12:amd64 (1.21.3-4ubuntu2) ... 172s Selecting previously unselected package libkdb5-10t64:amd64. 172s Preparing to unpack .../048-libkdb5-10t64_1.21.3-4ubuntu2_amd64.deb ... 172s Unpacking libkdb5-10t64:amd64 (1.21.3-4ubuntu2) ... 172s Selecting previously unselected package libkadm5srv-mit12:amd64. 172s Preparing to unpack .../049-libkadm5srv-mit12_1.21.3-4ubuntu2_amd64.deb ... 172s Unpacking libkadm5srv-mit12:amd64 (1.21.3-4ubuntu2) ... 172s Selecting previously unselected package krb5-multidev:amd64. 172s Preparing to unpack .../050-krb5-multidev_1.21.3-4ubuntu2_amd64.deb ... 172s Unpacking krb5-multidev:amd64 (1.21.3-4ubuntu2) ... 172s Selecting previously unselected package libaec0:amd64. 172s Preparing to unpack .../051-libaec0_1.1.3-1_amd64.deb ... 172s Unpacking libaec0:amd64 (1.1.3-1) ... 172s Selecting previously unselected package libio-string-perl. 172s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 172s Unpacking libio-string-perl (1.08-4) ... 172s Selecting previously unselected package liblatex-tounicode-perl. 172s Preparing to unpack .../053-liblatex-tounicode-perl_0.55-1_all.deb ... 172s Unpacking liblatex-tounicode-perl (0.55-1) ... 172s Selecting previously unselected package libbibtex-parser-perl. 172s Preparing to unpack .../054-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 172s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 172s Selecting previously unselected package libblas3:amd64. 172s Preparing to unpack .../055-libblas3_3.12.1-2_amd64.deb ... 172s Unpacking libblas3:amd64 (3.12.1-2) ... 172s Selecting previously unselected package libblas-dev:amd64. 172s Preparing to unpack .../056-libblas-dev_3.12.1-2_amd64.deb ... 172s Unpacking libblas-dev:amd64 (3.12.1-2) ... 172s Selecting previously unselected package libsnappy1v5:amd64. 172s Preparing to unpack .../057-libsnappy1v5_1.2.1-1_amd64.deb ... 172s Unpacking libsnappy1v5:amd64 (1.2.1-1) ... 172s Selecting previously unselected package libblosc1:amd64. 172s Preparing to unpack .../058-libblosc1_1.21.5+ds-1build1_amd64.deb ... 172s Unpacking libblosc1:amd64 (1.21.5+ds-1build1) ... 172s Selecting previously unselected package libbrotli-dev:amd64. 172s Preparing to unpack .../059-libbrotli-dev_1.1.0-2build4_amd64.deb ... 172s Unpacking libbrotli-dev:amd64 (1.1.0-2build4) ... 172s Selecting previously unselected package libbz2-dev:amd64. 172s Preparing to unpack .../060-libbz2-dev_1.0.8-6_amd64.deb ... 172s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 172s Selecting previously unselected package libpixman-1-0:amd64. 172s Preparing to unpack .../061-libpixman-1-0_0.44.0-3_amd64.deb ... 172s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 172s Selecting previously unselected package libxcb-render0:amd64. 172s Preparing to unpack .../062-libxcb-render0_1.17.0-2_amd64.deb ... 172s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 172s Selecting previously unselected package libxcb-shm0:amd64. 172s Preparing to unpack .../063-libxcb-shm0_1.17.0-2_amd64.deb ... 172s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 172s Selecting previously unselected package libxrender1:amd64. 172s Preparing to unpack .../064-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 172s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 172s Selecting previously unselected package libcairo2:amd64. 172s Preparing to unpack .../065-libcairo2_1.18.2-2_amd64.deb ... 172s Unpacking libcairo2:amd64 (1.18.2-2) ... 172s Selecting previously unselected package libidn2-dev:amd64. 172s Preparing to unpack .../066-libidn2-dev_2.3.7-2build2_amd64.deb ... 172s Unpacking libidn2-dev:amd64 (2.3.7-2build2) ... 172s Selecting previously unselected package libkrb5-dev:amd64. 172s Preparing to unpack .../067-libkrb5-dev_1.21.3-4ubuntu2_amd64.deb ... 172s Unpacking libkrb5-dev:amd64 (1.21.3-4ubuntu2) ... 172s Selecting previously unselected package libldap-dev:amd64. 172s Preparing to unpack .../068-libldap-dev_2.6.9+dfsg-1~exp2ubuntu1_amd64.deb ... 172s Unpacking libldap-dev:amd64 (2.6.9+dfsg-1~exp2ubuntu1) ... 172s Selecting previously unselected package libpkgconf3:amd64. 172s Preparing to unpack .../069-libpkgconf3_1.8.1-4_amd64.deb ... 172s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 172s Selecting previously unselected package pkgconf-bin. 172s Preparing to unpack .../070-pkgconf-bin_1.8.1-4_amd64.deb ... 172s Unpacking pkgconf-bin (1.8.1-4) ... 172s Selecting previously unselected package pkgconf:amd64. 172s Preparing to unpack .../071-pkgconf_1.8.1-4_amd64.deb ... 172s Unpacking pkgconf:amd64 (1.8.1-4) ... 172s Selecting previously unselected package libnghttp2-dev:amd64. 172s Preparing to unpack .../072-libnghttp2-dev_1.64.0-1_amd64.deb ... 172s Unpacking libnghttp2-dev:amd64 (1.64.0-1) ... 172s Selecting previously unselected package libpsl-dev:amd64. 172s Preparing to unpack .../073-libpsl-dev_0.21.2-1.1build1_amd64.deb ... 172s Unpacking libpsl-dev:amd64 (0.21.2-1.1build1) ... 172s Selecting previously unselected package libgmpxx4ldbl:amd64. 172s Preparing to unpack .../074-libgmpxx4ldbl_2%3a6.3.0+dfsg-3ubuntu1_amd64.deb ... 172s Unpacking libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3ubuntu1) ... 172s Selecting previously unselected package libgmp-dev:amd64. 172s Preparing to unpack .../075-libgmp-dev_2%3a6.3.0+dfsg-3ubuntu1_amd64.deb ... 172s Unpacking libgmp-dev:amd64 (2:6.3.0+dfsg-3ubuntu1) ... 173s Selecting previously unselected package libevent-2.1-7t64:amd64. 173s Preparing to unpack .../076-libevent-2.1-7t64_2.1.12-stable-10_amd64.deb ... 173s Unpacking libevent-2.1-7t64:amd64 (2.1.12-stable-10) ... 173s Selecting previously unselected package libunbound8:amd64. 173s Preparing to unpack .../077-libunbound8_1.22.0-1ubuntu1_amd64.deb ... 173s Unpacking libunbound8:amd64 (1.22.0-1ubuntu1) ... 173s Selecting previously unselected package libgnutls-dane0t64:amd64. 173s Preparing to unpack .../078-libgnutls-dane0t64_3.8.9-2ubuntu2_amd64.deb ... 173s Unpacking libgnutls-dane0t64:amd64 (3.8.9-2ubuntu2) ... 173s Selecting previously unselected package libgnutls-openssl27t64:amd64. 173s Preparing to unpack .../079-libgnutls-openssl27t64_3.8.9-2ubuntu2_amd64.deb ... 173s Unpacking libgnutls-openssl27t64:amd64 (3.8.9-2ubuntu2) ... 173s Selecting previously unselected package libp11-kit-dev:amd64. 173s Preparing to unpack .../080-libp11-kit-dev_0.25.5-2ubuntu3_amd64.deb ... 173s Unpacking libp11-kit-dev:amd64 (0.25.5-2ubuntu3) ... 173s Selecting previously unselected package libtasn1-6-dev:amd64. 173s Preparing to unpack .../081-libtasn1-6-dev_4.20.0-2_amd64.deb ... 173s Unpacking libtasn1-6-dev:amd64 (4.20.0-2) ... 173s Selecting previously unselected package nettle-dev:amd64. 173s Preparing to unpack .../082-nettle-dev_3.10.1-1_amd64.deb ... 173s Unpacking nettle-dev:amd64 (3.10.1-1) ... 173s Selecting previously unselected package libgnutls28-dev:amd64. 173s Preparing to unpack .../083-libgnutls28-dev_3.8.9-2ubuntu2_amd64.deb ... 173s Unpacking libgnutls28-dev:amd64 (3.8.9-2ubuntu2) ... 173s Selecting previously unselected package zlib1g-dev:amd64. 173s Preparing to unpack .../084-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 173s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 173s Selecting previously unselected package librtmp-dev:amd64. 173s Preparing to unpack .../085-librtmp-dev_2.4+20151223.gitfa8646d.1-2build7_amd64.deb ... 173s Unpacking librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2build7) ... 173s Selecting previously unselected package libssl-dev:amd64. 173s Preparing to unpack .../086-libssl-dev_3.4.1-1ubuntu1_amd64.deb ... 173s Unpacking libssl-dev:amd64 (3.4.1-1ubuntu1) ... 173s Selecting previously unselected package libssh2-1-dev:amd64. 173s Preparing to unpack .../087-libssh2-1-dev_1.11.1-1_amd64.deb ... 173s Unpacking libssh2-1-dev:amd64 (1.11.1-1) ... 173s Selecting previously unselected package libzstd-dev:amd64. 173s Preparing to unpack .../088-libzstd-dev_1.5.6+dfsg-2_amd64.deb ... 173s Unpacking libzstd-dev:amd64 (1.5.6+dfsg-2) ... 173s Selecting previously unselected package libcurl4-openssl-dev:amd64. 173s Preparing to unpack .../089-libcurl4-openssl-dev_8.12.1-3ubuntu1_amd64.deb ... 173s Unpacking libcurl4-openssl-dev:amd64 (8.12.1-3ubuntu1) ... 173s Selecting previously unselected package libdatrie1:amd64. 173s Preparing to unpack .../090-libdatrie1_0.2.13-3build1_amd64.deb ... 173s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 173s Selecting previously unselected package libdeflate0:amd64. 173s Preparing to unpack .../091-libdeflate0_1.23-1_amd64.deb ... 173s Unpacking libdeflate0:amd64 (1.23-1) ... 173s Selecting previously unselected package libdeflate-dev:amd64. 173s Preparing to unpack .../092-libdeflate-dev_1.23-1_amd64.deb ... 173s Unpacking libdeflate-dev:amd64 (1.23-1) ... 173s Selecting previously unselected package libgraphite2-3:amd64. 173s Preparing to unpack .../093-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 173s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 173s Selecting previously unselected package libharfbuzz0b:amd64. 173s Preparing to unpack .../094-libharfbuzz0b_10.2.0-1_amd64.deb ... 173s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 173s Selecting previously unselected package libsz2:amd64. 173s Preparing to unpack .../095-libsz2_1.1.3-1_amd64.deb ... 173s Unpacking libsz2:amd64 (1.1.3-1) ... 173s Selecting previously unselected package libhdf5-310:amd64. 173s Preparing to unpack .../096-libhdf5-310_1.14.5+repack-3_amd64.deb ... 173s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... 173s Selecting previously unselected package libhdf5-cpp-310:amd64. 173s Preparing to unpack .../097-libhdf5-cpp-310_1.14.5+repack-3_amd64.deb ... 173s Unpacking libhdf5-cpp-310:amd64 (1.14.5+repack-3) ... 173s Selecting previously unselected package libhdf5-fortran-310:amd64. 173s Preparing to unpack .../098-libhdf5-fortran-310_1.14.5+repack-3_amd64.deb ... 173s Unpacking libhdf5-fortran-310:amd64 (1.14.5+repack-3) ... 173s Selecting previously unselected package libhdf5-hl-310:amd64. 173s 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Selecting previously unselected package libjpeg8:amd64. 174s Preparing to unpack .../104-libjpeg8_8c-2ubuntu11_amd64.deb ... 174s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 174s Selecting previously unselected package libjpeg8-dev:amd64. 174s Preparing to unpack .../105-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 174s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 174s Selecting previously unselected package libjpeg-dev:amd64. 174s Preparing to unpack .../106-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 174s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 174s Selecting previously unselected package libaec-dev:amd64. 174s Preparing to unpack .../107-libaec-dev_1.1.3-1_amd64.deb ... 174s Unpacking libaec-dev:amd64 (1.1.3-1) ... 174s Selecting previously unselected package libhdf5-dev. 174s Preparing to unpack .../108-libhdf5-dev_1.14.5+repack-3_amd64.deb ... 174s Unpacking libhdf5-dev (1.14.5+repack-3) ... 174s Selecting previously unselected package x11-common. 174s Preparing to unpack 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unselected package libpcre2-16-0:amd64. 175s Preparing to unpack .../141-libpcre2-16-0_10.45-1_amd64.deb ... 175s Unpacking libpcre2-16-0:amd64 (10.45-1) ... 175s Selecting previously unselected package libpcre2-32-0:amd64. 175s Preparing to unpack .../142-libpcre2-32-0_10.45-1_amd64.deb ... 175s Unpacking libpcre2-32-0:amd64 (10.45-1) ... 176s Selecting previously unselected package libpcre2-posix3:amd64. 176s Preparing to unpack .../143-libpcre2-posix3_10.45-1_amd64.deb ... 176s Unpacking libpcre2-posix3:amd64 (10.45-1) ... 176s Selecting previously unselected package libpcre2-dev:amd64. 176s Preparing to unpack .../144-libpcre2-dev_10.45-1_amd64.deb ... 176s Unpacking libpcre2-dev:amd64 (10.45-1) ... 176s Selecting previously unselected package libpng-dev:amd64. 176s Preparing to unpack .../145-libpng-dev_1.6.47-1_amd64.deb ... 176s Unpacking libpng-dev:amd64 (1.6.47-1) ... 176s Selecting previously unselected package libpotrace0:amd64. 176s Preparing to unpack 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unpack .../156-libwebp7_1.5.0-0.1_amd64.deb ... 176s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 176s Selecting previously unselected package libtiff6:amd64. 176s Preparing to unpack .../157-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 176s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 176s Selecting previously unselected package libxft2:amd64. 176s Preparing to unpack .../158-libxft2_2.3.6-1build1_amd64.deb ... 176s Unpacking libxft2:amd64 (2.3.6-1build1) ... 176s Selecting previously unselected package libxss1:amd64. 176s Preparing to unpack .../159-libxss1_1%3a1.2.3-1build3_amd64.deb ... 176s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 176s Selecting previously unselected package libtk8.6:amd64. 176s Preparing to unpack .../160-libtk8.6_8.6.16-1_amd64.deb ... 176s Unpacking libtk8.6:amd64 (8.6.16-1) ... 176s Selecting previously unselected package libxt6t64:amd64. 176s Preparing to unpack .../161-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 176s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 176s Selecting previously unselected package libxmu6:amd64. 176s Preparing to unpack .../162-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 176s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 176s Selecting previously unselected package libxpm4:amd64. 176s Preparing to unpack .../163-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 176s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 176s Selecting previously unselected package libxaw7:amd64. 176s Preparing to unpack .../164-libxaw7_2%3a1.0.16-1_amd64.deb ... 176s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 176s Selecting previously unselected package libxi6:amd64. 176s Preparing to unpack .../165-libxi6_2%3a1.8.2-1_amd64.deb ... 176s Unpacking libxi6:amd64 (2:1.8.2-1) ... 176s Selecting previously unselected package libzzip-0-13t64:amd64. 176s Preparing to unpack .../166-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 176s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 176s Selecting previously unselected package zip. 176s Preparing to unpack .../167-zip_3.0-14ubuntu2_amd64.deb ... 176s Unpacking zip (3.0-14ubuntu2) ... 176s Selecting previously unselected package unzip. 176s Preparing to unpack .../168-unzip_6.0-28ubuntu6_amd64.deb ... 176s Unpacking unzip (6.0-28ubuntu6) ... 176s Selecting previously unselected package xdg-utils. 176s Preparing to unpack .../169-xdg-utils_1.2.1-2ubuntu1_all.deb ... 176s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 177s Selecting previously unselected package r-base-core. 177s Preparing to unpack .../170-r-base-core_4.4.3-1_amd64.deb ... 177s Unpacking r-base-core (4.4.3-1) ... 177s Selecting previously unselected package r-cran-littler. 177s Preparing to unpack .../171-r-cran-littler_0.3.20-2_amd64.deb ... 177s Unpacking r-cran-littler (0.3.20-2) ... 177s Selecting previously unselected package littler. 177s Preparing to unpack .../172-littler_0.3.20-2_all.deb ... 177s Unpacking littler (0.3.20-2) ... 177s Selecting previously unselected package node-bootstrap-sass. 177s Preparing to unpack .../173-node-bootstrap-sass_3.4.3-2_all.deb ... 177s Unpacking node-bootstrap-sass (3.4.3-2) ... 177s Selecting previously unselected package node-html5shiv. 177s Preparing to unpack .../174-node-html5shiv_3.7.3+dfsg-5_all.deb ... 177s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 177s Selecting previously unselected package node-normalize.css. 177s Preparing to unpack .../175-node-normalize.css_8.0.1-5_all.deb ... 177s Unpacking node-normalize.css (8.0.1-5) ... 177s Selecting previously unselected package pandoc-data. 177s Preparing to unpack .../176-pandoc-data_3.1.11.1-3build1_all.deb ... 177s Unpacking pandoc-data (3.1.11.1-3build1) ... 177s Selecting previously unselected package pandoc. 177s Preparing to unpack .../177-pandoc_3.1.11.1+ds-2_amd64.deb ... 177s Unpacking pandoc (3.1.11.1+ds-2) ... 178s Selecting previously unselected package liblzma-dev:amd64. 178s Preparing to unpack .../178-liblzma-dev_5.6.4-1_amd64.deb ... 178s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 178s Selecting previously unselected package libtirpc-dev:amd64. 178s Preparing to unpack .../179-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 178s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 178s Selecting previously unselected package r-base-dev. 178s Preparing to unpack .../180-r-base-dev_4.4.3-1_all.deb ... 178s Unpacking r-base-dev (4.4.3-1) ... 178s Selecting previously unselected package pkg-r-autopkgtest. 178s Preparing to unpack .../181-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 178s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 178s Selecting previously unselected package r-bioc-biocgenerics. 178s Preparing to unpack .../182-r-bioc-biocgenerics_0.52.0-2_all.deb ... 178s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 178s Selecting previously unselected package r-bioc-biobase. 178s Preparing to unpack .../183-r-bioc-biobase_2.66.0-2_amd64.deb ... 178s Unpacking r-bioc-biobase (2.66.0-2) ... 178s Selecting previously unselected package r-bioc-s4vectors. 178s Preparing to unpack .../184-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 178s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 178s Selecting previously unselected package r-bioc-iranges. 178s Preparing to unpack .../185-r-bioc-iranges_2.40.1-2_amd64.deb ... 178s Unpacking r-bioc-iranges (2.40.1-2) ... 178s Selecting previously unselected package r-cran-dbi. 178s Preparing to unpack .../186-r-cran-dbi_1.2.3-1_all.deb ... 178s Unpacking r-cran-dbi (1.2.3-1) ... 178s Selecting previously unselected package r-cran-bit. 178s Preparing to unpack .../187-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 178s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 178s Selecting previously unselected package r-cran-bit64. 178s Preparing to unpack .../188-r-cran-bit64_4.6.0-1-1ubuntu2_amd64.deb ... 178s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 178s Selecting previously unselected package r-cran-rlang. 178s Preparing to unpack .../189-r-cran-rlang_1.1.5-1_amd64.deb ... 178s Unpacking r-cran-rlang (1.1.5-1) ... 178s Selecting previously unselected package r-cran-cli. 178s Preparing to unpack .../190-r-cran-cli_3.6.4-1_amd64.deb ... 178s Unpacking r-cran-cli (3.6.4-1) ... 178s Selecting previously unselected package r-cran-glue. 178s Preparing to unpack .../191-r-cran-glue_1.8.0-1_amd64.deb ... 178s Unpacking r-cran-glue (1.8.0-1) ... 178s Selecting previously unselected package r-cran-lifecycle. 178s Preparing to unpack .../192-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 178s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 178s Selecting previously unselected package r-cran-vctrs. 178s Preparing to unpack .../193-r-cran-vctrs_0.6.5-1_amd64.deb ... 178s Unpacking r-cran-vctrs (0.6.5-1) ... 179s Selecting previously unselected package r-cran-blob. 179s Preparing to unpack .../194-r-cran-blob_1.2.4-1_all.deb ... 179s Unpacking r-cran-blob (1.2.4-1) ... 179s Selecting previously unselected package r-cran-fastmap. 179s Preparing to unpack .../195-r-cran-fastmap_1.2.0-1_amd64.deb ... 179s Unpacking r-cran-fastmap (1.2.0-1) ... 179s Selecting previously unselected package r-cran-cachem. 179s Preparing to unpack .../196-r-cran-cachem_1.1.0-1_amd64.deb ... 179s Unpacking r-cran-cachem (1.1.0-1) ... 179s Selecting previously unselected package r-cran-memoise. 179s Preparing to unpack .../197-r-cran-memoise_2.0.1-1_all.deb ... 179s Unpacking r-cran-memoise (2.0.1-1) ... 179s Selecting previously unselected package r-cran-pkgconfig. 179s Preparing to unpack .../198-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 179s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 179s Selecting previously unselected package r-cran-plogr. 179s Preparing to unpack .../199-r-cran-plogr_0.2.0-3build1_all.deb ... 179s Unpacking r-cran-plogr (0.2.0-3build1) ... 179s Selecting previously unselected package r-cran-cpp11. 179s Preparing to unpack .../200-r-cran-cpp11_0.5.2-1_all.deb ... 179s Unpacking r-cran-cpp11 (0.5.2-1) ... 179s Selecting previously unselected package r-cran-rsqlite. 179s Preparing to unpack .../201-r-cran-rsqlite_2.3.9-1_amd64.deb ... 179s Unpacking r-cran-rsqlite (2.3.9-1) ... 179s Selecting previously unselected package r-cran-curl. 179s Preparing to unpack .../202-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 179s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 179s Selecting previously unselected package r-cran-jsonlite. 179s Preparing to unpack .../203-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 179s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 179s Selecting previously unselected package r-cran-mime. 179s Preparing to unpack .../204-r-cran-mime_0.12-2_amd64.deb ... 179s Unpacking r-cran-mime (0.12-2) ... 179s Selecting previously unselected package r-cran-sys. 179s Preparing to unpack .../205-r-cran-sys_3.4.3-1_amd64.deb ... 179s Unpacking r-cran-sys (3.4.3-1) ... 179s Selecting previously unselected package r-cran-askpass. 179s Preparing to unpack .../206-r-cran-askpass_1.2.1-1_amd64.deb ... 179s Unpacking r-cran-askpass (1.2.1-1) ... 179s Selecting previously unselected package r-cran-openssl. 179s Preparing to unpack .../207-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 179s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 179s Selecting previously unselected package r-cran-r6. 179s Preparing to unpack .../208-r-cran-r6_2.6.1-1_all.deb ... 179s Unpacking r-cran-r6 (2.6.1-1) ... 179s Selecting previously unselected package r-cran-httr. 179s Preparing to unpack .../209-r-cran-httr_1.4.7+dfsg-1_all.deb ... 179s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 179s Selecting previously unselected package r-cran-png. 179s Preparing to unpack .../210-r-cran-png_0.1-8-1build2_amd64.deb ... 179s Unpacking r-cran-png (0.1-8-1build2) ... 179s Selecting previously unselected package r-bioc-zlibbioc. 179s Preparing to unpack .../211-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 179s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 179s Selecting previously unselected package r-bioc-xvector. 179s Preparing to unpack .../212-r-bioc-xvector_0.46.0-2_amd64.deb ... 179s Unpacking r-bioc-xvector (0.46.0-2) ... 179s Selecting previously unselected package r-bioc-ucsc.utils. 179s Preparing to unpack .../213-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 179s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 179s Selecting previously unselected package r-bioc-genomeinfodbdata. 179s Preparing to unpack .../214-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 179s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 179s Selecting previously unselected package r-bioc-genomeinfodb. 179s Preparing to unpack .../215-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 179s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 179s Selecting previously unselected package r-cran-crayon. 179s Preparing to unpack .../216-r-cran-crayon_1.5.3-1_all.deb ... 179s Unpacking r-cran-crayon (1.5.3-1) ... 179s Selecting previously unselected package r-bioc-biostrings. 179s Preparing to unpack .../217-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 179s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 180s Selecting previously unselected package r-bioc-keggrest. 180s Preparing to unpack .../218-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 180s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 180s Selecting previously unselected package r-bioc-annotationdbi. 180s Preparing to unpack .../219-r-bioc-annotationdbi_1.68.0-2_all.deb ... 180s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 180s Selecting previously unselected package r-cran-generics. 180s Preparing to unpack .../220-r-cran-generics_0.1.3-1_all.deb ... 180s Unpacking r-cran-generics (0.1.3-1) ... 180s Selecting previously unselected package r-cran-magrittr. 180s Preparing to unpack .../221-r-cran-magrittr_2.0.3-1_amd64.deb ... 180s Unpacking r-cran-magrittr (2.0.3-1) ... 180s Selecting previously unselected package r-cran-utf8. 180s Preparing to unpack .../222-r-cran-utf8_1.2.4-1_amd64.deb ... 180s Unpacking r-cran-utf8 (1.2.4-1) ... 180s Selecting previously unselected package r-cran-pillar. 180s Preparing to unpack .../223-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 180s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 180s Selecting previously unselected package r-cran-fansi. 180s Preparing to unpack .../224-r-cran-fansi_1.0.5-1_amd64.deb ... 180s Unpacking r-cran-fansi (1.0.5-1) ... 180s Selecting previously unselected package r-cran-tibble. 180s Preparing to unpack .../225-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 180s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 180s Selecting previously unselected package r-cran-withr. 180s Preparing to unpack .../226-r-cran-withr_3.0.2+dfsg-1_all.deb ... 180s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 180s Selecting previously unselected package r-cran-tidyselect. 180s Preparing to unpack .../227-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 180s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 180s Selecting previously unselected package r-cran-dplyr. 180s Preparing to unpack .../228-r-cran-dplyr_1.1.4-4_amd64.deb ... 180s Unpacking r-cran-dplyr (1.1.4-4) ... 180s Selecting previously unselected package r-cran-purrr. 180s Preparing to unpack .../229-r-cran-purrr_1.0.4-1_amd64.deb ... 180s Unpacking r-cran-purrr (1.0.4-1) ... 180s Selecting previously unselected package r-cran-stringi. 180s Preparing to unpack .../230-r-cran-stringi_1.8.4-1build1_amd64.deb ... 180s Unpacking r-cran-stringi (1.8.4-1build1) ... 180s Selecting previously unselected package r-cran-stringr. 180s Preparing to unpack .../231-r-cran-stringr_1.5.1-1_all.deb ... 180s Unpacking r-cran-stringr (1.5.1-1) ... 180s Selecting previously unselected package r-cran-tidyr. 180s Preparing to unpack .../232-r-cran-tidyr_1.3.1-1_amd64.deb ... 180s Unpacking r-cran-tidyr (1.3.1-1) ... 180s Selecting previously unselected package r-cran-dbplyr. 180s Preparing to unpack .../233-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ... 180s Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ... 180s Selecting previously unselected package r-cran-filelock. 180s Preparing to unpack .../234-r-cran-filelock_1.0.3-1_amd64.deb ... 180s Unpacking r-cran-filelock (1.0.3-1) ... 180s Selecting previously unselected package r-bioc-biocfilecache. 180s Preparing to unpack .../235-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 180s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 180s Selecting previously unselected package r-cran-biocmanager. 180s Preparing to unpack .../236-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 180s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 180s Selecting previously unselected package r-bioc-biocversion. 180s Preparing to unpack .../237-r-bioc-biocversion_3.20.0-2_all.deb ... 180s Unpacking r-bioc-biocversion (3.20.0-2) ... 180s Selecting previously unselected package r-cran-rappdirs. 180s Preparing to unpack .../238-r-cran-rappdirs_0.3.3-1_amd64.deb ... 180s Unpacking r-cran-rappdirs (0.3.3-1) ... 180s Selecting previously unselected package r-cran-yaml. 180s Preparing to unpack .../239-r-cran-yaml_2.3.10-1_amd64.deb ... 180s Unpacking r-cran-yaml (2.3.10-1) ... 181s Selecting previously unselected package r-bioc-annotationhub. 181s Preparing to unpack .../240-r-bioc-annotationhub_3.14.0+dfsg-2_all.deb ... 181s Unpacking r-bioc-annotationhub (3.14.0+dfsg-2) ... 181s Selecting previously unselected package r-cran-base64enc. 181s Preparing to unpack .../241-r-cran-base64enc_0.1-3-3_amd64.deb ... 181s Unpacking r-cran-base64enc (0.1-3-3) ... 181s Selecting previously unselected package r-cran-digest. 181s Preparing to unpack .../242-r-cran-digest_0.6.37-1_amd64.deb ... 181s Unpacking r-cran-digest (0.6.37-1) ... 181s Selecting previously unselected package r-cran-htmltools. 181s Preparing to unpack .../243-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 181s Unpacking r-cran-htmltools (0.5.8.1-1) ... 181s Selecting previously unselected package r-cran-evaluate. 181s Preparing to unpack .../244-r-cran-evaluate_1.0.3-1_all.deb ... 181s Unpacking r-cran-evaluate (1.0.3-1) ... 181s Selecting previously unselected package r-cran-xfun. 181s Preparing to unpack .../245-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 181s Unpacking r-cran-xfun (0.51+dfsg-1) ... 181s Selecting previously unselected package r-cran-highr. 181s Preparing to unpack .../246-r-cran-highr_0.11+dfsg-1_all.deb ... 181s Unpacking r-cran-highr (0.11+dfsg-1) ... 181s Selecting previously unselected package libjs-mathjax. 181s Preparing to unpack .../247-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 181s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 181s Selecting previously unselected package r-cran-knitr. 181s Preparing to unpack .../248-r-cran-knitr_1.49+dfsg-1_all.deb ... 181s Unpacking r-cran-knitr (1.49+dfsg-1) ... 182s Selecting previously unselected package r-cran-jquerylib. 182s Preparing to unpack .../249-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 182s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 182s Selecting previously unselected package r-cran-fs. 182s Preparing to unpack .../250-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 182s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 182s Selecting previously unselected package r-cran-sass. 182s Preparing to unpack .../251-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 182s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 182s Selecting previously unselected package r-cran-bslib. 182s Preparing to unpack .../252-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 182s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 182s Selecting previously unselected package r-cran-fontawesome. 182s Preparing to unpack .../253-r-cran-fontawesome_0.5.3-1_all.deb ... 182s Unpacking r-cran-fontawesome (0.5.3-1) ... 182s Selecting previously unselected package r-cran-tinytex. 182s Preparing to unpack .../254-r-cran-tinytex_0.56-1_all.deb ... 182s Unpacking r-cran-tinytex (0.56-1) ... 182s Selecting previously unselected package libjs-modernizr. 182s Preparing to unpack .../255-libjs-modernizr_3.13.0-0.1_all.deb ... 182s Unpacking libjs-modernizr (3.13.0-0.1) ... 182s Selecting previously unselected package r-cran-pkgkitten. 182s Preparing to unpack .../256-r-cran-pkgkitten_0.2.4-1_all.deb ... 182s Unpacking r-cran-pkgkitten (0.2.4-1) ... 182s Selecting previously unselected package r-cran-rcpp. 182s Preparing to unpack .../257-r-cran-rcpp_1.0.14-1_amd64.deb ... 182s Unpacking r-cran-rcpp (1.0.14-1) ... 182s Selecting previously unselected package r-cran-later. 182s Preparing to unpack .../258-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 182s Unpacking r-cran-later (1.4.1+dfsg-1) ... 182s Selecting previously unselected package r-cran-promises. 182s Preparing to unpack .../259-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 182s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 182s Selecting previously unselected package r-cran-httpuv. 182s Preparing to unpack .../260-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 182s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 182s Selecting previously unselected package r-cran-xtable. 182s Preparing to unpack .../261-r-cran-xtable_1%3a1.8-4-2_all.deb ... 182s Unpacking r-cran-xtable (1:1.8-4-2) ... 182s Selecting previously unselected package r-cran-sourcetools. 182s Preparing to unpack .../262-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 182s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 182s Selecting previously unselected package r-cran-commonmark. 182s Preparing to unpack .../263-r-cran-commonmark_1.9.2-2_amd64.deb ... 182s Unpacking r-cran-commonmark (1.9.2-2) ... 182s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 182s Preparing to unpack .../264-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 182s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 182s Selecting previously unselected package r-cran-shiny. 182s Preparing to unpack .../265-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 182s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 182s Selecting previously unselected package r-cran-rmarkdown. 182s Preparing to unpack .../266-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 182s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 183s Selecting previously unselected package r-cran-bookdown. 183s Preparing to unpack .../267-r-cran-bookdown_0.42+dfsg-1_all.deb ... 183s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 183s Selecting previously unselected package tex-common. 183s Preparing to unpack .../268-tex-common_6.19_all.deb ... 183s Unpacking tex-common (6.19) ... 183s Selecting previously unselected package t1utils. 183s Preparing to unpack .../269-t1utils_1.41-4build3_amd64.deb ... 183s Unpacking t1utils (1.41-4build3) ... 183s Selecting previously unselected package texlive-binaries. 183s Preparing to unpack .../270-texlive-binaries_2024.20240313.70630+ds-5build2_amd64.deb ... 183s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ... 183s Selecting previously unselected package texlive-base. 183s Preparing to unpack .../271-texlive-base_2024.20250114-1_all.deb ... 183s Unpacking texlive-base (2024.20250114-1) ... 184s Selecting previously unselected package texlive-latex-base. 184s Preparing to unpack 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186s Unpacking r-cran-matrixstats (1.5.0-1) ... 186s Selecting previously unselected package r-bioc-matrixgenerics. 186s Preparing to unpack .../278-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 186s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 186s Selecting previously unselected package r-cran-abind. 186s Preparing to unpack .../279-r-cran-abind_1.4-8-1_all.deb ... 186s Unpacking r-cran-abind (1.4-8-1) ... 186s Selecting previously unselected package r-bioc-s4arrays. 186s Preparing to unpack .../280-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 186s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 186s Selecting previously unselected package r-bioc-sparsearray. 186s Preparing to unpack .../281-r-bioc-sparsearray_1.6.2+dfsg-1_amd64.deb ... 186s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 186s Selecting previously unselected package r-bioc-delayedarray. 186s Preparing to unpack .../282-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 186s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 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r-bioc-zlibbioc (1.52.0+dfsg-2) ... 192s Setting up r-cran-askpass (1.2.1-1) ... 192s Setting up r-cran-fastmap (1.2.0-1) ... 192s Setting up r-cran-png (0.1-8-1build2) ... 192s Setting up r-bioc-biobase (2.66.0-2) ... 192s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 192s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 192s Setting up r-cran-utf8 (1.2.4-1) ... 192s Setting up r-cran-stringi (1.8.4-1build1) ... 192s Setting up texlive-latex-base (2024.20250114-1) ... 192s Setting up r-cran-cpp11 (0.5.2-1) ... 192s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 192s Setting up r-cran-waldo (0.6.1-2) ... 192s Setting up r-cran-later (1.4.1+dfsg-1) ... 192s Setting up r-cran-matrix (1.7-3-1) ... 192s Setting up r-cran-htmltools (0.5.8.1-1) ... 192s Setting up r-cran-tinytex (0.56-1) ... 192s Setting up r-cran-knitr (1.49+dfsg-1) ... 192s Setting up g++ (4:14.2.0-1ubuntu1) ... 192s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 192s Setting up r-cran-cachem (1.1.0-1) ... 192s Setting up r-cran-sass (0.4.9+dfsg-1) ... 192s Setting up build-essential (12.10ubuntu1) ... 192s Setting up r-bioc-iranges (2.40.1-2) ... 192s Setting up r-cran-vctrs (0.6.5-1) ... 192s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 192s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 192s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 192s Setting up r-cran-stringr (1.5.1-1) ... 192s Setting up r-cran-callr (3.7.6-1) ... 192s Setting up r-cran-desc (1.4.3-1) ... 192s Setting up r-bioc-rhdf5 (2.50.2+dfsg-1build1) ... 192s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 192s Setting up r-cran-fontawesome (0.5.3-1) ... 192s Setting up gfortran (4:14.2.0-1ubuntu1) ... 192s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 192s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 192s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 192s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 192s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 192s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 192s Setting up texlive-bibtex-extra (2024.20250114-1) ... 192s Setting up r-cran-httr (1.4.7+dfsg-1) ... 192s Setting up r-cran-memoise (2.0.1-1) ... 192s Setting up r-cran-promises (1.3.2+dfsg-1) ... 192s Setting up r-cran-purrr (1.0.4-1) ... 192s Setting up r-cran-blob (1.2.4-1) ... 192s Setting up r-bioc-xvector (0.46.0-2) ... 192s Setting up r-cran-pkgbuild (1.4.6-1) ... 192s Setting up r-cran-dplyr (1.1.4-4) ... 192s Setting up r-cran-rsqlite (2.3.9-1) ... 192s Setting up r-cran-pkgload (1.4.0-1) ... 192s Setting up r-base-dev (4.4.3-1) ... 192s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 192s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 192s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 192s Setting up r-cran-testthat (3.2.3-1) ... 192s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 192s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 192s Setting up r-cran-tidyr (1.3.1-1) ... 192s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 192s Setting up r-cran-dbplyr (2.5.0+dfsg-1) ... 192s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 192s Setting up r-bioc-hdf5array (1.34.0-2build1) ... 192s Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ... 192s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 192s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 192s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 192s Setting up r-cran-bookdown (0.42+dfsg-1) ... 192s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 192s Setting up r-bioc-annotationdbi (1.68.0-2) ... 192s Setting up r-bioc-annotationhub (3.14.0+dfsg-2) ... 192s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 192s Setting up r-bioc-experimenthub (2.14.0+ds-2) ... 192s Processing triggers for man-db (2.13.0-1) ... 194s Processing triggers for install-info (7.1.1-1) ... 194s Processing triggers for libc-bin (2.41-1ubuntu2) ... 194s Processing triggers for tex-common (6.19) ... 195s Running updmap-sys. This may take some time... done. 195s Running mktexlsr /var/lib/texmf ... done. 195s Building format(s) --all. 224s This may take some time... done. 225s autopkgtest [20:45:57]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 225s autopkgtest [20:45:57]: test pkg-r-autopkgtest: [----------------------- 225s Test: Try to load the R library SparseArray 225s 225s R version 4.4.3 (2025-02-28) -- "Trophy Case" 225s Copyright (C) 2025 The R Foundation for Statistical Computing 225s Platform: x86_64-pc-linux-gnu 225s 225s R is free software and comes with ABSOLUTELY NO WARRANTY. 225s You are welcome to redistribute it under certain conditions. 225s Type 'license()' or 'licence()' for distribution details. 225s 225s R is a collaborative project with many contributors. 225s Type 'contributors()' for more information and 225s 'citation()' on how to cite R or R packages in publications. 225s 225s Type 'demo()' for some demos, 'help()' for on-line help, or 225s 'help.start()' for an HTML browser interface to help. 225s Type 'q()' to quit R. 225s 225s > library('SparseArray') 225s Loading required package: Matrix 226s Loading required package: BiocGenerics 226s 226s Attaching package: ‘BiocGenerics’ 226s 226s The following objects are masked from ‘package:stats’: 226s 226s IQR, mad, sd, var, xtabs 226s 226s The following objects are masked from ‘package:base’: 226s 226s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 226s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 226s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 226s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 226s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 226s table, tapply, union, unique, unsplit, which.max, which.min 226s 226s Loading required package: MatrixGenerics 226s Loading required package: matrixStats 226s 226s Attaching package: ‘MatrixGenerics’ 226s 226s The following objects are masked from ‘package:matrixStats’: 226s 226s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 226s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 226s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 226s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 226s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 226s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 226s colWeightedMeans, colWeightedMedians, colWeightedSds, 226s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 226s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 226s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 226s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 226s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 226s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 226s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 226s rowWeightedSds, rowWeightedVars 226s 226s Loading required package: S4Vectors 226s Loading required package: stats4 226s 226s Attaching package: ‘S4Vectors’ 226s 226s The following objects are masked from ‘package:Matrix’: 226s 226s expand, unname 226s 226s The following object is masked from ‘package:utils’: 226s 226s findMatches 226s 226s The following objects are masked from ‘package:base’: 226s 226s expand.grid, I, unname 226s 226s Loading required package: S4Arrays 226s Loading required package: abind 226s Loading required package: IRanges 227s 227s Attaching package: ‘S4Arrays’ 227s 227s The following object is masked from ‘package:abind’: 227s 227s abind 227s 227s The following object is masked from ‘package:base’: 227s 227s rowsum 227s 228s > 228s > 228s Other tests are currently unsupported! 228s They will be progressively added. 228s autopkgtest [20:46:00]: test pkg-r-autopkgtest: -----------------------] 229s pkg-r-autopkgtest PASS 229s autopkgtest [20:46:01]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 229s autopkgtest [20:46:01]: @@@@@@@@@@@@@@@@@@@@ summary 229s pkg-r-autopkgtest PASS 245s nova [W] Skipping flock for amd64 245s Creating nova instance adt-plucky-amd64-r-bioc-sparsearray-20250315-204212-juju-7f2275-prod-proposed-migration-environment-2-d10ac8be-1eaa-4d47-bd95-7cab3a3de9ca from image adt/ubuntu-plucky-amd64-server-20250306.img (UUID 60d877d7-b74c-4f24-920d-f4570db0a338)... 245s nova [W] Timed out waiting for c38dfb0c-4cd9-413e-94c1-f8a60d2b3a02 to get deleted.