0s autopkgtest [22:01:08]: starting date and time: 2025-03-15 22:01:08+0000 0s autopkgtest [22:01:08]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [22:01:08]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.py519zxd/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-singler --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-23.secgroup --name adt-plucky-amd64-r-bioc-singler-20250315-220108-juju-7f2275-prod-proposed-migration-environment-20-87a4bf7d-fc53-4582-9ceb-83ae346ba258 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 49s autopkgtest [22:01:57]: testbed dpkg architecture: amd64 49s autopkgtest [22:01:57]: testbed apt version: 2.9.31ubuntu1 49s autopkgtest [22:01:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 50s autopkgtest [22:01:58]: testbed release detected to be: None 50s autopkgtest [22:01:58]: updating testbed package index (apt update) 51s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 51s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 51s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 51s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 51s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 51s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 51s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 51s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 51s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 51s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 51s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 51s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 51s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 51s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 51s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 51s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 51s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 52s Fetched 1265 kB in 1s (1500 kB/s) 53s Reading package lists... 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 54s Calculating upgrade... 54s Calculating upgrade... 54s The following package was automatically installed and is no longer required: 54s libnl-genl-3-200 54s Use 'sudo apt autoremove' to remove it. 55s The following NEW packages will be installed: 55s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 55s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 55s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 55s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 55s The following packages will be upgraded: 55s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 55s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 55s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 55s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 55s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 55s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 55s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 55s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 55s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 55s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 55s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 55s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 55s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 55s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 55s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 55s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 55s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 55s parted pci.ids pciutils pinentry-curses python-apt-common python3 55s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 55s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 55s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 55s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 55s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 55s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 55s xz-utils 55s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 55s Need to get 829 MB of archives. 55s After this operation, 325 MB of additional disk space will be used. 55s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 55s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 55s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 55s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 56s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 56s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 56s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 56s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 56s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 56s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 56s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 56s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 56s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 56s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 56s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 56s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 56s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 56s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 56s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 56s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 56s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 56s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 56s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 56s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 56s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 56s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 56s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 56s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 56s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 56s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 56s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 56s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 56s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 56s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 56s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 56s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 56s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 56s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 57s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 57s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 57s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 57s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 57s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 57s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 57s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 57s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 57s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 57s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 57s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 57s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 57s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 57s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 57s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 57s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 57s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 57s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 57s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 57s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 57s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 57s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 57s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 57s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 57s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 57s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 57s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 57s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 57s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 57s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 57s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 57s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 57s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 57s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 57s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 57s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 57s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 57s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 57s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 57s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 57s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 57s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 57s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 57s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 57s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 57s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 57s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 57s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 57s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 57s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 58s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 58s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 58s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 58s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 58s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 58s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 58s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 58s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 58s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 58s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 58s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 58s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 58s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 58s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 58s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 58s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 58s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 59s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 59s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 59s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 59s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 74s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 74s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 74s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 74s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 74s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 74s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 74s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 74s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 75s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 75s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 78s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 78s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 78s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 78s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 78s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 78s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 79s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 79s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 79s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 79s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 79s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 79s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 79s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 79s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 79s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 79s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 79s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 79s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 79s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 80s Preconfiguring packages ... 80s Fetched 829 MB in 24s (33.8 MB/s) 80s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109140 files and directories currently installed.) 80s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu1_amd64.deb ... 80s Unpacking libc-dev-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 80s Preparing to unpack .../libc6-dev_2.41-1ubuntu1_amd64.deb ... 80s Unpacking libc6-dev:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 80s Preparing to unpack .../locales_2.41-1ubuntu1_all.deb ... 80s Unpacking locales (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 81s Preparing to unpack .../libc6_2.41-1ubuntu1_amd64.deb ... 81s Checking for services that may need to be restarted... 81s Checking init scripts... 81s Checking for services that may need to be restarted... 81s Checking init scripts... 81s Stopping some services possibly affected by the upgrade (will be restarted later): 81s cron: stopping...done. 81s 81s Unpacking libc6:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 81s Setting up libc6:amd64 (2.41-1ubuntu1) ... 81s Checking for services that may need to be restarted... 81s Checking init scripts... 81s Restarting services possibly affected by the upgrade: 81s cron: restarting...done. 81s 81s Services restarted successfully. 81s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 84s Preparing to unpack .../libaudit1_1%3a4.0.2-2ubuntu2_amd64.deb ... 84s Unpacking libaudit1:amd64 (1:4.0.2-2ubuntu2) over (1:4.0.2-2ubuntu1) ... 85s Setting up libaudit1:amd64 (1:4.0.2-2ubuntu2) ... 85s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 86s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 86s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 86s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 86s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 86s Setting up python3-minimal (3.13.2-2) ... 86s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 87s Preparing to unpack .../0-libsqlite3-0_3.46.1-2_amd64.deb ... 87s Unpacking libsqlite3-0:amd64 (3.46.1-2) over (3.46.1-1) ... 87s Preparing to unpack .../1-python3.13_3.13.2-2_amd64.deb ... 87s Unpacking python3.13 (3.13.2-2) over (3.13.2-1) ... 87s Preparing to unpack .../2-python3.13-minimal_3.13.2-2_amd64.deb ... 87s Unpacking python3.13-minimal (3.13.2-2) over (3.13.2-1) ... 87s Preparing to unpack .../3-libpython3.13-minimal_3.13.2-2_amd64.deb ... 87s Unpacking libpython3.13-minimal:amd64 (3.13.2-2) over (3.13.2-1) ... 87s Preparing to unpack .../4-libpython3.13-stdlib_3.13.2-2_amd64.deb ... 87s Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 87s Preparing to unpack .../5-libpython3-stdlib_3.13.2-2_amd64.deb ... 87s Unpacking libpython3-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 87s Preparing to unpack .../6-rsync_3.4.1+ds1-3_amd64.deb ... 87s Unpacking rsync (3.4.1+ds1-3) over (3.4.1-0syncable1) ... 87s Selecting previously unselected package libdebuginfod-common. 87s Preparing to unpack .../7-libdebuginfod-common_0.192-4_all.deb ... 87s Unpacking libdebuginfod-common (0.192-4) ... 87s Preparing to unpack .../8-libsemanage-common_3.7-2.1build1_all.deb ... 87s Unpacking libsemanage-common (3.7-2.1build1) over (3.7-2.1) ... 87s Setting up libsemanage-common (3.7-2.1build1) ... 87s (Reading database ... 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unpack .../29-xz-utils_5.6.4-1_amd64.deb ... 91s Unpacking xz-utils (5.6.4-1) over (5.6.3-1) ... 91s Preparing to unpack .../30-ubuntu-standard_1.549_amd64.deb ... 91s Unpacking ubuntu-standard (1.549) over (1.548) ... 91s Preparing to unpack .../31-libgprofng0_2.44-3ubuntu1_amd64.deb ... 91s Unpacking libgprofng0:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 91s Preparing to unpack .../32-libctf0_2.44-3ubuntu1_amd64.deb ... 91s Unpacking libctf0:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 91s Preparing to unpack .../33-libctf-nobfd0_2.44-3ubuntu1_amd64.deb ... 91s Unpacking libctf-nobfd0:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 91s Preparing to unpack .../34-binutils-x86-64-linux-gnu_2.44-3ubuntu1_amd64.deb ... 91s Unpacking binutils-x86-64-linux-gnu (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 91s Preparing to unpack .../35-libbinutils_2.44-3ubuntu1_amd64.deb ... 91s Unpacking libbinutils:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 91s Preparing to unpack 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libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 103s Setting up pci.ids (0.0~2025.03.09-1) ... 103s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 103s Setting up apt-utils (2.9.33) ... 103s Setting up libdebuginfod-common (0.192-4) ... 103s Setting up exfatprogs (1.2.8-1) ... 103s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 103s Setting up bpftool (7.6.0+6.14.0-10.10) ... 103s Setting up libestr0:amd64 (0.1.11-2) ... 103s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 103s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 103s Setting up dosfstools (4.2-1.2) ... 103s Setting up rsyslog (8.2412.0-2ubuntu2) ... 103s info: The user `syslog' is already a member of `adm'. 104s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 104s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 104s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 104s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 104s Setting up systemd (257.3-1ubuntu3) ... 104s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 104s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 105s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 105s Setting up libparted2t64:amd64 (3.6-5) ... 105s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 105s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 105s Setting up linux-headers-generic (6.14.0-10.10) ... 105s Setting up libjemalloc2:amd64 (5.3.0-3) ... 105s Setting up locales (2.41-1ubuntu1) ... 105s Installing new version of config file /etc/locale.alias ... 106s Generating locales (this might take a while)... 107s en_US.UTF-8... done 107s Generation complete. 107s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 107s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 107s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 107s Installing new version of config file /etc/apparmor.d/fusermount3 ... 107s Installing new version of config file /etc/apparmor.d/lsusb ... 107s Installing new version of config file /etc/apparmor.d/openvpn ... 108s Reloading AppArmor profiles 109s Setting up libftdi1-2:amd64 (1.5-8build1) ... 109s Setting up libglib2.0-data (2.84.0-1) ... 109s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 109s Setting up libncurses6:amd64 (6.5+20250216-2) ... 109s Setting up strace (6.13+ds-1ubuntu1) ... 109s Setting up xz-utils (5.6.4-1) ... 109s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 110s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 110s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 110s Setting up udev (257.3-1ubuntu3) ... 111s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 113s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 113s Setting up libpci3:amd64 (1:3.13.0-2) ... 113s Setting up whiptail (0.52.24-4ubuntu2) ... 113s Setting up python-apt-common (2.9.9build1) ... 113s Setting up pnp.ids (0.393-3) ... 113s Setting up libnl-3-200:amd64 (3.7.0-1) ... 113s Setting up python3.13-minimal (3.13.2-2) ... 113s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 113s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 113s Setting up libc-dev-bin (2.41-1ubuntu1) ... 113s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 113s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 113s Setting up rsync (3.4.1+ds1-3) ... 114s rsync.service is a disabled or a static unit not running, not starting it. 114s Setting up python3.13-gdbm (3.13.2-2) ... 114s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 114s Setting up systemd-resolved (257.3-1ubuntu3) ... 115s Setting up initramfs-tools-bin (0.146ubuntu1) ... 115s Setting up ncurses-term (6.5+20250216-2) ... 115s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 115s Setting up libpython3.13:amd64 (3.13.2-2) ... 115s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 115s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 115s Setting up systemd-sysv (257.3-1ubuntu3) ... 115s Setting up linux-headers-virtual (6.14.0-10.10) ... 115s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 115s Setting up python3.13 (3.13.2-2) ... 115s Setting up htop (3.4.0-2) ... 115s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 118s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 118s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 118s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 118s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 118s Setting up parted (3.6-5) ... 118s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 118s Setting up python3 (3.13.2-2) ... 118s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 118s Setting up python3-markupsafe (2.1.5-1build4) ... 118s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 120s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 120s Setting up hwdata (0.393-3) ... 120s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 120s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 120s No schema files found: doing nothing. 120s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 120s Setting up linux-perf (6.14.0-10.10) ... 120s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 120s Setting up pciutils (1:3.13.0-2) ... 120s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 120s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 120s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 120s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 120s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 120s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 120s Setting up curl (8.12.1-3ubuntu1) ... 120s Setting up linux-image-virtual (6.14.0-10.10) ... 120s Setting up initramfs-tools-core (0.146ubuntu1) ... 120s Setting up linux-tools-common (6.14.0-10.10) ... 120s Setting up python3-systemd (235-1build6) ... 121s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 121s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 121s Setting up linux-image-generic (6.14.0-10.10) ... 121s Setting up python3-dbus (1.3.2-5build5) ... 121s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 121s Setting up initramfs-tools (0.146ubuntu1) ... 121s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 121s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 121s update-initramfs: deferring update (trigger activated) 121s Setting up linux-generic (6.14.0-10.10) ... 121s Setting up ubuntu-minimal (1.549) ... 121s Setting up python3-apt (2.9.9build1) ... 121s Setting up python3-bcrypt (4.2.0-2.1build1) ... 121s Setting up python3-yaml (6.0.2-1build2) ... 121s Setting up libfwupd3:amd64 (2.0.6-4) ... 121s Setting up python3-lazr.uri (1.0.6-6) ... 121s Setting up binutils (2.44-3ubuntu1) ... 121s Setting up ubuntu-standard (1.549) ... 121s Setting up cloud-init-base (25.1-0ubuntu3) ... 123s Setting up linux-virtual (6.14.0-10.10) ... 123s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 123s Setting up python3-gi (3.50.0-4build1) ... 123s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 123s Setting up fwupd (2.0.6-4) ... 123s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 123s fwupd.service is a disabled or a static unit not running, not starting it. 123s Setting up cloud-init (25.1-0ubuntu3) ... 123s Processing triggers for man-db (2.13.0-1) ... 125s Processing triggers for dbus (1.16.2-1ubuntu1) ... 125s Processing triggers for shared-mime-info (2.4-5) ... 125s Warning: program compiled against libxml 212 using older 209 125s Processing triggers for libc-bin (2.41-1ubuntu1) ... 126s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 126s /etc/kernel/postinst.d/initramfs-tools: 126s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 126s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 136s /etc/kernel/postinst.d/zz-update-grub: 136s Sourcing file `/etc/default/grub' 136s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 136s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 136s Generating grub configuration file ... 136s Found linux image: /boot/vmlinuz-6.14.0-10-generic 136s Found initrd image: /boot/initrd.img-6.14.0-10-generic 136s Found linux image: /boot/vmlinuz-6.12.0-16-generic 136s Found initrd image: /boot/initrd.img-6.12.0-16-generic 136s Found linux image: /boot/vmlinuz-6.11.0-8-generic 136s Found initrd image: /boot/initrd.img-6.11.0-8-generic 136s Warning: os-prober will not be executed to detect other bootable partitions. 136s Systems on them will not be added to the GRUB boot configuration. 136s Check GRUB_DISABLE_OS_PROBER documentation entry. 136s Adding boot menu entry for UEFI Firmware Settings ... 136s done 136s Processing triggers for initramfs-tools (0.146ubuntu1) ... 136s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 136s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 147s Reading package lists... 148s Building dependency tree... 148s Reading state information... 148s Solving dependencies... 148s The following packages will be REMOVED: 148s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 148s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 148s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 148s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 148s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 148s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 148s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 148s linux-tools-6.12.0-16-generic* 148s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 148s After this operation, 545 MB disk space will be freed. 148s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 148s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 148s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 148s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 148s Removing libpython3.12t64:amd64 (3.12.9-1) ... 148s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 149s Removing libnsl2:amd64 (1.3.0-3build3) ... 149s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 149s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 149s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 151s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 152s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 154s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 154s /etc/kernel/postrm.d/initramfs-tools: 154s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 155s /etc/kernel/postrm.d/zz-update-grub: 155s Sourcing file `/etc/default/grub' 155s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 155s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 155s Generating grub configuration file ... 155s Found linux image: /boot/vmlinuz-6.14.0-10-generic 155s Found initrd image: /boot/initrd.img-6.14.0-10-generic 155s Found linux image: /boot/vmlinuz-6.12.0-16-generic 155s Found initrd image: /boot/initrd.img-6.12.0-16-generic 155s Warning: os-prober will not be executed to detect other bootable partitions. 155s Systems on them will not be added to the GRUB boot configuration. 155s Check GRUB_DISABLE_OS_PROBER documentation entry. 155s Adding boot menu entry for UEFI Firmware Settings ... 155s done 155s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 155s W: Removing the running kernel 155s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 155s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 155s /etc/kernel/postrm.d/initramfs-tools: 155s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 155s /etc/kernel/postrm.d/zz-update-grub: 155s Sourcing file `/etc/default/grub' 155s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 155s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 155s Generating grub configuration file ... 156s Found linux image: /boot/vmlinuz-6.14.0-10-generic 156s Found initrd image: /boot/initrd.img-6.14.0-10-generic 156s Warning: os-prober will not be executed to detect other bootable partitions. 156s Systems on them will not be added to the GRUB boot configuration. 156s Check GRUB_DISABLE_OS_PROBER documentation entry. 156s Adding boot menu entry for UEFI Firmware Settings ... 156s done 156s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 156s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 158s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 158s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 158s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 158s Processing triggers for libc-bin (2.41-1ubuntu1) ... 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 158s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 158s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 158s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 158s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 158s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 158s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 158s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 158s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 159s autopkgtest [22:03:47]: upgrading testbed (apt dist-upgrade and autopurge) 159s Reading package lists... 160s Building dependency tree... 160s Reading state information... 160s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 160s Starting 2 pkgProblemResolver with broken count: 0 160s Done 160s Entering ResolveByKeep 160s 160s Calculating upgrade... 160s The following packages will be upgraded: 160s libc-bin libc-dev-bin libc6 libc6-dev locales 160s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 160s Need to get 10.5 MB of archives. 160s After this operation, 1024 B of additional disk space will be used. 160s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 161s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 161s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 161s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 161s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 162s Preconfiguring packages ... 162s Fetched 10.5 MB in 1s (8862 kB/s) 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 162s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 162s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 162s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 162s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 162s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 162s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 163s Setting up libc6:amd64 (2.41-1ubuntu2) ... 163s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 163s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 163s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 163s Setting up libc-bin (2.41-1ubuntu2) ... 163s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 163s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 163s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 163s Setting up locales (2.41-1ubuntu2) ... 165s Generating locales (this might take a while)... 165s en_US.UTF-8... done 165s Generation complete. 165s Setting up libc-dev-bin (2.41-1ubuntu2) ... 165s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 165s Processing triggers for man-db (2.13.0-1) ... 166s Processing triggers for systemd (257.3-1ubuntu3) ... 167s Reading package lists... 167s Building dependency tree... 167s Reading state information... 167s Starting pkgProblemResolver with broken count: 0 167s Starting 2 pkgProblemResolver with broken count: 0 167s Done 168s Solving dependencies... 168s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 168s autopkgtest [22:03:56]: rebooting testbed after setup commands that affected boot 192s autopkgtest [22:04:20]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 195s autopkgtest [22:04:23]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-singler 197s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-singler 2.8.0+ds-3 (dsc) [2417 B] 197s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-singler 2.8.0+ds-3 (tar) [62.2 kB] 197s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-singler 2.8.0+ds-3 (diff) [3720 B] 197s gpgv: Signature made Tue Jan 21 13:14:54 2025 UTC 197s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 197s gpgv: issuer "crusoe@debian.org" 197s gpgv: Can't check signature: No public key 197s dpkg-source: warning: cannot verify inline signature for ./r-bioc-singler_2.8.0+ds-3.dsc: no acceptable signature found 197s autopkgtest [22:04:25]: testing package r-bioc-singler version 2.8.0+ds-3 197s autopkgtest [22:04:25]: build not needed 199s autopkgtest [22:04:27]: test pkg-r-autopkgtest: preparing testbed 200s Reading package lists... 200s Building dependency tree... 200s Reading state information... 200s Starting pkgProblemResolver with broken count: 0 200s Starting 2 pkgProblemResolver with broken count: 0 200s Done 201s The following NEW packages will be installed: 201s build-essential comerr-dev cpp cpp-14 cpp-14-x86-64-linux-gnu 201s cpp-x86-64-linux-gnu dctrl-tools fontconfig fontconfig-config 201s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 201s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-14 201s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 201s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 201s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu hdf5-helpers 201s icu-devtools javascript-common krb5-multidev libaec-dev libaec0 libamd3 201s libasan8 libbibtex-parser-perl libblas-dev libblas3 libblosc1 libboost-dev 201s libboost1.83-dev libbrotli-dev libbz2-dev libcairo2 libcc1-0 libcolamd3 201s libcurl4-openssl-dev libdatrie1 libdeflate-dev libdeflate0 libevent-2.1-7t64 201s libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 libglpk40 201s libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 201s libgnutls28-dev libgomp1 libgraphite2-3 libgssrpc4t64 libharfbuzz0b 201s libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 201s libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libhnswlib-dev libhwasan0 libice6 201s libicu-dev libidn2-dev libio-string-perl libisl23 libitm1 libjbig0 201s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 201s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 201s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 201s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 201s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 201s libjs-twitter-bootstrap-datepicker libkadm5clnt-mit12 libkadm5srv-mit12 201s libkdb5-10t64 libkpathsea6 libkrb5-dev liblapack-dev liblapack3 201s liblatex-tounicode-perl libldap-dev liblerc4 liblsan0 libltdl7 liblua5.4-0 201s liblzma-dev libmpc3 libmpfi0 libncurses-dev libnghttp2-dev libp11-kit-dev 201s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 201s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 201s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl-dev libptexenc1 201s libquadmath0 libreadline-dev librtmp-dev libsharpyuv0 libsm6 libsnappy1v5 201s libssh2-1-dev libssl-dev libstdc++-14-dev libsuitesparseconfig7 libsynctex2 201s libsz2 libtasn1-6-dev libtcl8.6 libteckit0 libtexlua53-5 libthai-data 201s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libunbound8 201s libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 201s libxrender1 libxss1 libxt6t64 libzstd-dev libzzip-0-13t64 littler nettle-dev 201s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 201s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 201s r-bioc-alabaster.base r-bioc-alabaster.matrix r-bioc-alabaster.ranges 201s r-bioc-alabaster.sce r-bioc-alabaster.schemas r-bioc-alabaster.se 201s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 201s r-bioc-assorthead r-bioc-beachmat r-bioc-biobase r-bioc-biocfilecache 201s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocneighbors r-bioc-biocparallel 201s r-bioc-biocsingular r-bioc-biocstyle r-bioc-biocversion r-bioc-biostrings 201s r-bioc-bluster r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-edger 201s r-bioc-ensembldb r-bioc-experimenthub r-bioc-genomeinfodb 201s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 201s r-bioc-genomicranges r-bioc-gypsum r-bioc-hdf5array r-bioc-iranges 201s r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics r-bioc-metapod 201s r-bioc-protgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib 201s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 201s r-bioc-s4vectors r-bioc-scaledmatrix r-bioc-scater r-bioc-scran 201s r-bioc-scrnaseq r-bioc-scuttle r-bioc-singlecellexperiment r-bioc-singler 201s r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-summarizedexperiment 201s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass 201s r-cran-base64enc r-cran-beeswarm r-cran-bh r-cran-biocmanager r-cran-bit 201s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio 201s r-cran-bslib r-cran-cachem r-cran-cairo r-cran-callr r-cran-cli 201s r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark 201s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-desc 201s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-dqrng r-cran-evaluate 201s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fnn 201s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 201s r-cran-futile.options r-cran-generics r-cran-ggbeeswarm r-cran-ggplot2 201s r-cran-ggrastr r-cran-ggrepel r-cran-glue r-cran-gridextra r-cran-gtable 201s r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-httr2 201s r-cran-igraph r-cran-irlba r-cran-isoband r-cran-jquerylib r-cran-jsonlite 201s r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice 201s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-locfit 201s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 201s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl 201s r-cran-pheatmap r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 201s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 201s r-cran-processx r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-ragg 201s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppannoy 201s r-cran-rcppeigen r-cran-rcppml r-cran-rcppprogress r-cran-rcurl 201s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rprojroot 201s r-cran-rspectra r-cran-rsqlite r-cran-rsvd r-cran-rtsne r-cran-sass 201s r-cran-scales r-cran-shiny r-cran-sitmo r-cran-snow r-cran-sourcetools 201s r-cran-statmod r-cran-stringi r-cran-stringr r-cran-sys r-cran-systemfonts 201s r-cran-testthat r-cran-textshaping r-cran-tibble r-cran-tidyr 201s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-uwot r-cran-vctrs 201s r-cran-vipor r-cran-viridis r-cran-viridislite r-cran-waldo r-cran-withr 201s r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml t1utils tex-common 201s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 201s x11-common xdg-utils zip zlib1g-dev 201s 0 upgraded, 399 newly installed, 0 to remove and 0 not upgraded. 201s Need to get 520 MB of archives. 201s After this operation, 1540 MB of additional disk space will be used. 201s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 201s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 201s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 202s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 202s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 202s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 202s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 202s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 202s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 202s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 202s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 202s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 202s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 202s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 202s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 202s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 202s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 203s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 203s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 203s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 203s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 203s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 204s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 204s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 204s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 204s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 204s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 204s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 204s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 204s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 204s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 204s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 204s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 204s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 204s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 204s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 205s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 205s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 205s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 205s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 205s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 205s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 205s Get:43 http://ftpmaster.internal/ubuntu plucky/universe amd64 hdf5-helpers amd64 1.14.5+repack-3 [17.0 kB] 205s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 205s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 205s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 comerr-dev amd64 2.1-1.47.2-1ubuntu1 [44.9 kB] 205s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libgssrpc4t64 amd64 1.21.3-4ubuntu2 [58.1 kB] 205s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libkadm5clnt-mit12 amd64 1.21.3-4ubuntu2 [41.3 kB] 205s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libkdb5-10t64 amd64 1.21.3-4ubuntu2 [42.0 kB] 205s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libkadm5srv-mit12 amd64 1.21.3-4ubuntu2 [55.5 kB] 205s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 krb5-multidev amd64 1.21.3-4ubuntu2 [125 kB] 205s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 205s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-3 [13.5 kB] 205s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd3 amd64 1:7.8.3+dfsg-3 [31.0 kB] 205s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 205s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 205s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 205s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 206s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 206s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB] 206s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB] 206s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB] 206s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 206s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli-dev amd64 1.1.0-2build4 [381 kB] 206s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 206s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 206s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 206s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 206s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 206s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 206s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-3 [19.5 kB] 206s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libidn2-dev amd64 2.3.7-2build2 [120 kB] 206s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libkrb5-dev amd64 1.21.3-4ubuntu2 [11.9 kB] 206s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libldap-dev amd64 2.6.9+dfsg-1~exp2ubuntu1 [335 kB] 206s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 206s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 206s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 206s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libnghttp2-dev amd64 1.64.0-1 [123 kB] 206s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libpsl-dev amd64 0.21.2-1.1build1 [76.4 kB] 206s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3ubuntu1 [10.0 kB] 206s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3ubuntu1 [341 kB] 206s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10 [144 kB] 206s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libunbound8 amd64 1.22.0-1ubuntu1 [519 kB] 206s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-dane0t64 amd64 3.8.9-2ubuntu2 [24.4 kB] 206s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2ubuntu2 [24.6 kB] 206s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libp11-kit-dev amd64 0.25.5-2ubuntu3 [23.5 kB] 206s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libtasn1-6-dev amd64 4.20.0-2 [98.1 kB] 206s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 nettle-dev amd64 3.10.1-1 [1187 kB] 206s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls28-dev amd64 3.8.9-2ubuntu2 [1118 kB] 206s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 206s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2build7 [66.7 kB] 206s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libssl-dev amd64 3.4.1-1ubuntu1 [2873 kB] 207s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libssh2-1-dev amd64 1.11.1-1 [292 kB] 207s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [444 kB] 207s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4-openssl-dev amd64 8.12.1-3ubuntu1 [522 kB] 207s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 207s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 207s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 207s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libltdl7 amd64 2.5.4-4 [46.5 kB] 207s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 libglpk40 amd64 5.0-1build2 [369 kB] 207s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 207s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 207s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 207s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 207s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-cpp-310 amd64 1.14.5+repack-3 [129 kB] 207s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-fortran-310 amd64 1.14.5+repack-3 [108 kB] 207s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 207s Get:108 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-3 [32.4 kB] 207s Get:109 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-3 [11.7 kB] 207s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 207s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 207s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 207s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 207s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 207s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec-dev amd64 1.1.3-1 [19.8 kB] 207s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-dev amd64 1.14.5+repack-3 [3505 kB] 208s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhnswlib-dev all 0.8.0-1build3 [24.4 kB] 208s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 208s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 208s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 209s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 209s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 209s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 209s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 209s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 209s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 209s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 209s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 209s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 209s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 209s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 209s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 209s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 209s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 209s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 209s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB] 209s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 209s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 209s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 209s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 209s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 209s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 209s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 209s Get:144 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 209s Get:145 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 209s Get:146 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 209s Get:147 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 209s Get:148 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 209s Get:149 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 209s Get:150 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 209s Get:151 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 209s Get:152 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 209s Get:153 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 210s Get:154 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 210s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 210s Get:156 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB] 210s Get:157 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 210s Get:158 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 210s Get:159 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 210s Get:160 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB] 210s Get:161 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 210s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 210s Get:163 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB] 210s Get:164 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 210s Get:165 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 210s Get:166 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 210s Get:167 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 210s Get:168 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 210s Get:169 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 210s Get:170 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 210s Get:171 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 210s Get:172 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 210s Get:173 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 210s Get:174 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 210s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 210s Get:176 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 210s Get:177 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 210s Get:178 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 210s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 212s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 212s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 212s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 212s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 212s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 212s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 212s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 214s Get:187 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 214s Get:188 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 214s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 214s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 214s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 214s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-alabaster.schemas all 1.6.0+ds-2 [24.9 kB] 214s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 214s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5lib amd64 1.28.0+dfsg-2build1 [97.4 kB] 214s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5filters amd64 1.18.0+dfsg-2 [137 kB] 214s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5 amd64 2.50.2+dfsg-1build1 [822 kB] 214s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 214s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 214s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 214s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-alabaster.base amd64 1.6.1+ds-2build1 [800 kB] 214s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 214s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 215s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 215s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 215s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 215s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 215s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 215s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 215s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 215s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 215s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1392 kB] 215s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 216s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-hdf5array amd64 1.34.0-2build1 [8792 kB] 216s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-alabaster.matrix amd64 1.6.1+ds-2 [443 kB] 216s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 216s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 216s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 216s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 216s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 216s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 216s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 216s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 216s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 217s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 217s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 217s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-alabaster.ranges all 1.6.0+ds-2 [100 kB] 217s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 218s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 218s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-singlecellexperiment all 1.28.1+ds-2 [829 kB] 218s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-alabaster.se all 1.6.0+ds-2 [87.0 kB] 218s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-alabaster.sce all 1.6.0+ds-2 [83.6 kB] 218s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 218s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 218s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB] 218s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 218s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 218s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 218s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 218s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 218s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 218s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 218s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 218s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 218s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 218s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 218s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 218s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 219s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 219s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 220s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 220s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 221s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 221s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationfilter all 1.30.0+dfsg-2 [247 kB] 221s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 221s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 221s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 221s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 221s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 221s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 221s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 221s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 221s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 221s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 221s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 222s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 222s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 222s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbplyr all 2.5.0+dfsg-1 [1233 kB] 222s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 222s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 222s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 222s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 222s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 222s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 222s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationhub all 3.14.0+dfsg-2 [447 kB] 222s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-assorthead all 1.0.1+ds-2 [194 kB] 222s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-beachmat amd64 2.22.0+ds-2 [976 kB] 222s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 222s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocneighbors amd64 2.0.1+ds-2 [446 kB] 222s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 222s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 222s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 222s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 222s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 222s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 222s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 222s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 222s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-scaledmatrix all 1.14.0+dfsg-2 [324 kB] 222s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-irlba amd64 2.3.5.1-4 [295 kB] 222s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsvd all 1.0.5-1 [3589 kB] 223s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocsingular amd64 1.22.0+ds-2 [357 kB] 223s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 223s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 223s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 223s Get:294 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 223s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 223s Get:296 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 223s Get:297 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 224s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 224s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 224s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 224s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 224s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 224s Get:303 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 224s Get:304 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 225s Get:305 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 225s Get:306 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 225s Get:307 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 225s Get:308 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 225s Get:309 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 225s Get:310 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 225s Get:311 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 225s Get:312 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 225s Get:313 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 225s Get:314 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 225s Get:315 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 225s Get:316 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB] 225s Get:317 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 226s Get:318 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB] 226s Get:319 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB] 227s Get:320 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB] 227s Get:321 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 230s Get:322 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 230s Get:323 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cluster amd64 2.1.8.1-1 [579 kB] 230s Get:324 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-igraph amd64 2.1.4-1 [5357 kB] 230s Get:325 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-bluster amd64 1.16.0+dfsg-2 [545 kB] 230s Get:326 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsematrixstats amd64 1.18.0+dfsg-2 [877 kB] 230s Get:327 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedmatrixstats all 1.28.1+ds-1 [502 kB] 230s Get:328 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 230s Get:329 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB] 230s Get:330 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-locfit amd64 1.5-9.12-1 [552 kB] 230s Get:331 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-edger amd64 4.4.2+dfsg-1 [1120 kB] 230s Get:332 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 230s Get:333 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB] 230s Get:334 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 230s Get:335 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 230s Get:336 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 231s Get:337 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 231s Get:338 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 231s Get:339 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 231s Get:340 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB] 231s Get:341 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 231s Get:342 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-protgenerics all 1.38.0-2 [239 kB] 231s Get:343 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ensembldb all 2.30.0+dfsg-3 [1520 kB] 231s Get:344 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-experimenthub all 2.14.0+ds-2 [84.6 kB] 231s Get:345 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr2 all 1.1.1-1 [752 kB] 231s Get:346 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-gypsum all 1.2.0+ds-2 [212 kB] 231s Get:347 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-metapod amd64 1.14.0+dfsg-2 [233 kB] 231s Get:348 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-scuttle amd64 1.16.0+dfsg-3 [459 kB] 231s Get:349 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 231s Get:350 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 231s Get:351 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 231s Get:352 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB] 231s Get:353 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 231s Get:354 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 231s Get:355 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 231s Get:356 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 231s Get:357 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 231s Get:358 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 231s Get:359 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 231s Get:360 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 231s Get:361 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 232s Get:362 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-beeswarm amd64 0.4.0-1 [82.3 kB] 232s Get:363 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vipor all 0.4.7-1 [4624 kB] 232s Get:364 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggbeeswarm all 0.7.2-1 [1732 kB] 232s Get:365 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 232s Get:366 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 232s Get:367 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rtsne amd64 0.17-1 [109 kB] 232s Get:368 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 232s Get:369 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppml amd64 0.3.7-2 [180 kB] 232s Get:370 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 232s Get:371 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppannoy amd64 0.0.22-1 [235 kB] 232s Get:372 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rspectra amd64 0.16-2-1 [448 kB] 232s Get:373 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sitmo amd64 2.0.2-1 [130 kB] 232s Get:374 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dqrng amd64 0.3.2+dfsg-1 [161 kB] 232s Get:375 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppprogress all 0.4.2-2build1 [22.0 kB] 232s Get:376 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-uwot amd64 0.2.3-1 [1080 kB] 232s Get:377 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pheatmap all 1.0.12-2build1 [78.2 kB] 232s Get:378 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggrepel amd64 0.9.6-1 [270 kB] 232s Get:379 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cairo amd64 1.6-2-1 [88.8 kB] 232s Get:380 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-systemfonts amd64 1.2.1-1 [347 kB] 232s Get:381 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-textshaping amd64 0.3.7-2 [95.5 kB] 232s Get:382 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ragg amd64 1.3.3-1 [510 kB] 232s Get:383 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggrastr all 1.0.2-1 [2566 kB] 232s Get:384 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-scater all 1.34.1+ds-1 [472 kB] 232s Get:385 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-scran amd64 1.34.0+dfsg-3 [1033 kB] 232s Get:386 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-scrnaseq all 2.20.0+ds-2 [309 kB] 232s Get:387 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-singler amd64 2.8.0+ds-3 [337 kB] 232s Get:388 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 232s Get:389 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 232s Get:390 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 232s Get:391 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 232s Get:392 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 232s Get:393 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 232s Get:394 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 232s Get:395 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] 232s Get:396 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 232s Get:397 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 232s Get:398 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-2 [150 kB] 232s Get:399 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 233s Preconfiguring packages ... 233s Fetched 520 MB in 32s (16.4 MB/s) 233s Selecting previously unselected package libisl23:amd64. 234s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 234s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 234s Unpacking libisl23:amd64 (0.27-1) ... 234s Selecting previously unselected package libmpc3:amd64. 234s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 234s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 234s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 234s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 234s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 234s Selecting previously unselected package cpp-14. 234s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 234s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 234s Selecting previously unselected package cpp-x86-64-linux-gnu. 234s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 234s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 234s Selecting previously unselected package cpp. 234s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 234s Unpacking cpp (4:14.2.0-1ubuntu1) ... 234s Selecting previously unselected package libcc1-0:amd64. 234s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 234s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 234s Selecting previously unselected package libgomp1:amd64. 234s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 234s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 234s Selecting previously unselected package libitm1:amd64. 234s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 234s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 234s Selecting previously unselected package libasan8:amd64. 234s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 234s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 234s Selecting previously unselected package liblsan0:amd64. 234s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 234s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 234s Selecting previously unselected package libtsan2:amd64. 234s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 234s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 234s Selecting previously unselected package libubsan1:amd64. 234s Preparing to unpack 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236s Selecting previously unselected package fonts-glyphicons-halflings. 236s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 236s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 236s Selecting previously unselected package fonts-lmodern. 236s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ... 236s Unpacking fonts-lmodern (2.005-1) ... 236s Selecting previously unselected package fonts-mathjax. 236s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 236s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 236s Selecting previously unselected package libgfortran5:amd64. 236s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 236s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 236s Selecting previously unselected package libgfortran-14-dev:amd64. 236s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 236s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) 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237s Selecting previously unselected package libamd3:amd64. 237s Preparing to unpack .../053-libamd3_1%3a7.8.3+dfsg-3_amd64.deb ... 237s Unpacking libamd3:amd64 (1:7.8.3+dfsg-3) ... 237s Selecting previously unselected package libio-string-perl. 237s Preparing to unpack .../054-libio-string-perl_1.08-4_all.deb ... 237s Unpacking libio-string-perl (1.08-4) ... 237s Selecting previously unselected package liblatex-tounicode-perl. 237s Preparing to unpack .../055-liblatex-tounicode-perl_0.55-1_all.deb ... 237s Unpacking liblatex-tounicode-perl (0.55-1) ... 237s Selecting previously unselected package libbibtex-parser-perl. 237s Preparing to unpack .../056-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 237s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 237s Selecting previously unselected package libblas3:amd64. 237s Preparing to unpack .../057-libblas3_3.12.1-2_amd64.deb ... 237s Unpacking libblas3:amd64 (3.12.1-2) ... 237s Selecting previously unselected package libblas-dev:amd64. 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libxrender1:amd64 (1:0.9.10-1.1build1) ... 240s Selecting previously unselected package libcairo2:amd64. 240s Preparing to unpack .../069-libcairo2_1.18.2-2_amd64.deb ... 240s Unpacking libcairo2:amd64 (1.18.2-2) ... 240s Selecting previously unselected package libcolamd3:amd64. 240s Preparing to unpack .../070-libcolamd3_1%3a7.8.3+dfsg-3_amd64.deb ... 240s Unpacking libcolamd3:amd64 (1:7.8.3+dfsg-3) ... 240s Selecting previously unselected package libidn2-dev:amd64. 240s Preparing to unpack .../071-libidn2-dev_2.3.7-2build2_amd64.deb ... 240s Unpacking libidn2-dev:amd64 (2.3.7-2build2) ... 240s Selecting previously unselected package libkrb5-dev:amd64. 240s Preparing to unpack .../072-libkrb5-dev_1.21.3-4ubuntu2_amd64.deb ... 240s Unpacking libkrb5-dev:amd64 (1.21.3-4ubuntu2) ... 240s Selecting previously unselected package libldap-dev:amd64. 240s Preparing to unpack .../073-libldap-dev_2.6.9+dfsg-1~exp2ubuntu1_amd64.deb ... 240s Unpacking libldap-dev:amd64 (2.6.9+dfsg-1~exp2ubuntu1) ... 240s Selecting previously unselected package libpkgconf3:amd64. 240s Preparing to unpack .../074-libpkgconf3_1.8.1-4_amd64.deb ... 240s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 240s Selecting previously unselected package pkgconf-bin. 240s Preparing to unpack .../075-pkgconf-bin_1.8.1-4_amd64.deb ... 240s Unpacking pkgconf-bin (1.8.1-4) ... 240s Selecting previously unselected package pkgconf:amd64. 240s Preparing to unpack .../076-pkgconf_1.8.1-4_amd64.deb ... 240s Unpacking pkgconf:amd64 (1.8.1-4) ... 240s Selecting previously unselected package libnghttp2-dev:amd64. 240s Preparing to unpack .../077-libnghttp2-dev_1.64.0-1_amd64.deb ... 240s Unpacking libnghttp2-dev:amd64 (1.64.0-1) ... 240s Selecting previously unselected package libpsl-dev:amd64. 240s Preparing to unpack .../078-libpsl-dev_0.21.2-1.1build1_amd64.deb ... 240s Unpacking libpsl-dev:amd64 (0.21.2-1.1build1) ... 240s Selecting previously unselected package libgmpxx4ldbl:amd64. 240s Preparing to unpack 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libgnutls-openssl27t64:amd64. 240s Preparing to unpack .../084-libgnutls-openssl27t64_3.8.9-2ubuntu2_amd64.deb ... 240s Unpacking libgnutls-openssl27t64:amd64 (3.8.9-2ubuntu2) ... 240s Selecting previously unselected package libp11-kit-dev:amd64. 240s Preparing to unpack .../085-libp11-kit-dev_0.25.5-2ubuntu3_amd64.deb ... 240s Unpacking libp11-kit-dev:amd64 (0.25.5-2ubuntu3) ... 240s Selecting previously unselected package libtasn1-6-dev:amd64. 240s Preparing to unpack .../086-libtasn1-6-dev_4.20.0-2_amd64.deb ... 240s Unpacking libtasn1-6-dev:amd64 (4.20.0-2) ... 240s Selecting previously unselected package nettle-dev:amd64. 240s Preparing to unpack .../087-nettle-dev_3.10.1-1_amd64.deb ... 240s Unpacking nettle-dev:amd64 (3.10.1-1) ... 241s Selecting previously unselected package libgnutls28-dev:amd64. 241s Preparing to unpack .../088-libgnutls28-dev_3.8.9-2ubuntu2_amd64.deb ... 241s Unpacking libgnutls28-dev:amd64 (3.8.9-2ubuntu2) ... 241s Selecting previously unselected package zlib1g-dev:amd64. 241s Preparing to unpack .../089-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 241s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 241s Selecting previously unselected package librtmp-dev:amd64. 241s Preparing to unpack .../090-librtmp-dev_2.4+20151223.gitfa8646d.1-2build7_amd64.deb ... 241s Unpacking librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2build7) ... 241s Selecting previously unselected package libssl-dev:amd64. 241s Preparing to unpack .../091-libssl-dev_3.4.1-1ubuntu1_amd64.deb ... 241s Unpacking libssl-dev:amd64 (3.4.1-1ubuntu1) ... 241s Selecting previously unselected package libssh2-1-dev:amd64. 241s Preparing to unpack .../092-libssh2-1-dev_1.11.1-1_amd64.deb ... 241s Unpacking libssh2-1-dev:amd64 (1.11.1-1) ... 241s Selecting previously unselected package libzstd-dev:amd64. 241s Preparing to unpack .../093-libzstd-dev_1.5.6+dfsg-2_amd64.deb ... 241s Unpacking libzstd-dev:amd64 (1.5.6+dfsg-2) ... 241s Selecting previously unselected package libcurl4-openssl-dev:amd64. 241s Preparing to unpack .../094-libcurl4-openssl-dev_8.12.1-3ubuntu1_amd64.deb ... 241s Unpacking libcurl4-openssl-dev:amd64 (8.12.1-3ubuntu1) ... 241s Selecting previously unselected package libdatrie1:amd64. 241s Preparing to unpack .../095-libdatrie1_0.2.13-3build1_amd64.deb ... 241s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 241s Selecting previously unselected package libdeflate0:amd64. 241s Preparing to unpack .../096-libdeflate0_1.23-1_amd64.deb ... 241s Unpacking libdeflate0:amd64 (1.23-1) ... 241s Selecting previously unselected package libdeflate-dev:amd64. 241s Preparing to unpack .../097-libdeflate-dev_1.23-1_amd64.deb ... 241s Unpacking libdeflate-dev:amd64 (1.23-1) ... 241s Selecting previously unselected package libltdl7:amd64. 241s Preparing to unpack .../098-libltdl7_2.5.4-4_amd64.deb ... 241s Unpacking libltdl7:amd64 (2.5.4-4) ... 241s Selecting previously unselected package libglpk40:amd64. 241s Preparing to unpack .../099-libglpk40_5.0-1build2_amd64.deb ... 241s Unpacking libglpk40:amd64 (5.0-1build2) ... 241s Selecting previously unselected package libgraphite2-3:amd64. 241s Preparing to unpack .../100-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 241s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 241s Selecting previously unselected package libharfbuzz0b:amd64. 241s Preparing to unpack .../101-libharfbuzz0b_10.2.0-1_amd64.deb ... 241s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 241s Selecting previously unselected package libsz2:amd64. 241s Preparing to unpack .../102-libsz2_1.1.3-1_amd64.deb ... 241s Unpacking libsz2:amd64 (1.1.3-1) ... 241s Selecting previously unselected package libhdf5-310:amd64. 241s Preparing to unpack .../103-libhdf5-310_1.14.5+repack-3_amd64.deb ... 241s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... 241s Selecting previously unselected package libhdf5-cpp-310:amd64. 241s Preparing to unpack .../104-libhdf5-cpp-310_1.14.5+repack-3_amd64.deb ... 241s Unpacking libhdf5-cpp-310:amd64 (1.14.5+repack-3) ... 241s Selecting previously unselected package libhdf5-fortran-310:amd64. 241s Preparing to unpack .../105-libhdf5-fortran-310_1.14.5+repack-3_amd64.deb ... 241s Unpacking libhdf5-fortran-310:amd64 (1.14.5+repack-3) ... 241s Selecting previously unselected package libhdf5-hl-310:amd64. 241s Preparing to unpack .../106-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ... 241s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 241s Selecting previously unselected package libhdf5-hl-fortran-310:amd64. 241s Preparing to unpack .../107-libhdf5-hl-fortran-310_1.14.5+repack-3_amd64.deb ... 241s Unpacking libhdf5-hl-fortran-310:amd64 (1.14.5+repack-3) ... 241s Selecting previously unselected package libhdf5-hl-cpp-310:amd64. 241s Preparing to unpack .../108-libhdf5-hl-cpp-310_1.14.5+repack-3_amd64.deb ... 241s Unpacking libhdf5-hl-cpp-310:amd64 (1.14.5+repack-3) ... 241s Selecting previously unselected package libjpeg-turbo8:amd64. 241s Preparing to unpack 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libmpfi0:amd64 (1.5.4+ds-4) ... 243s Selecting previously unselected package libncurses-dev:amd64. 243s Preparing to unpack .../141-libncurses-dev_6.5+20250216-2_amd64.deb ... 243s Unpacking libncurses-dev:amd64 (6.5+20250216-2) ... 243s Selecting previously unselected package libthai-data. 243s Preparing to unpack .../142-libthai-data_0.1.29-2build1_all.deb ... 243s Unpacking libthai-data (0.1.29-2build1) ... 243s Selecting previously unselected package libthai0:amd64. 243s Preparing to unpack .../143-libthai0_0.1.29-2build1_amd64.deb ... 243s Unpacking libthai0:amd64 (0.1.29-2build1) ... 243s Selecting previously unselected package libpango-1.0-0:amd64. 243s Preparing to unpack .../144-libpango-1.0-0_1.56.2-1_amd64.deb ... 243s Unpacking libpango-1.0-0:amd64 (1.56.2-1) ... 243s Selecting previously unselected package libpangoft2-1.0-0:amd64. 243s Preparing to unpack .../145-libpangoft2-1.0-0_1.56.2-1_amd64.deb ... 243s Unpacking libpangoft2-1.0-0:amd64 (1.56.2-1) ... 243s Selecting previously unselected package libpangocairo-1.0-0:amd64. 243s Preparing to unpack .../146-libpangocairo-1.0-0_1.56.2-1_amd64.deb ... 243s Unpacking libpangocairo-1.0-0:amd64 (1.56.2-1) ... 243s Selecting previously unselected package libpaper2:amd64. 243s Preparing to unpack .../147-libpaper2_2.2.5-0.3_amd64.deb ... 243s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 243s Selecting previously unselected package libpaper-utils. 243s Preparing to unpack .../148-libpaper-utils_2.2.5-0.3_amd64.deb ... 243s Unpacking libpaper-utils (2.2.5-0.3) ... 243s Selecting previously unselected package libpcre2-16-0:amd64. 243s Preparing to unpack .../149-libpcre2-16-0_10.45-1_amd64.deb ... 243s Unpacking libpcre2-16-0:amd64 (10.45-1) ... 244s Selecting previously unselected package libpcre2-32-0:amd64. 244s Preparing to unpack .../150-libpcre2-32-0_10.45-1_amd64.deb ... 244s Unpacking libpcre2-32-0:amd64 (10.45-1) ... 244s Selecting previously unselected package libpcre2-posix3:amd64. 244s Preparing to unpack .../151-libpcre2-posix3_10.45-1_amd64.deb ... 244s Unpacking libpcre2-posix3:amd64 (10.45-1) ... 244s Selecting previously unselected package libpcre2-dev:amd64. 244s Preparing to unpack .../152-libpcre2-dev_10.45-1_amd64.deb ... 244s Unpacking libpcre2-dev:amd64 (10.45-1) ... 244s Selecting previously unselected package libpng-dev:amd64. 244s Preparing to unpack .../153-libpng-dev_1.6.47-1_amd64.deb ... 244s Unpacking libpng-dev:amd64 (1.6.47-1) ... 244s Selecting previously unselected package libpotrace0:amd64. 244s Preparing to unpack .../154-libpotrace0_1.16-2build1_amd64.deb ... 244s Unpacking libpotrace0:amd64 (1.16-2build1) ... 244s Selecting previously unselected package libptexenc1:amd64. 244s Preparing to unpack .../155-libptexenc1_2024.20240313.70630+ds-6_amd64.deb ... 244s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-6) ... 244s Selecting previously unselected package libreadline-dev:amd64. 244s Preparing to unpack .../156-libreadline-dev_8.2-6_amd64.deb ... 244s Unpacking libreadline-dev:amd64 (8.2-6) ... 244s Selecting previously unselected package libsharpyuv0:amd64. 244s Preparing to unpack .../157-libsharpyuv0_1.5.0-0.1_amd64.deb ... 244s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 244s Selecting previously unselected package libsm6:amd64. 244s Preparing to unpack .../158-libsm6_2%3a1.2.4-1_amd64.deb ... 244s Unpacking libsm6:amd64 (2:1.2.4-1) ... 244s Selecting previously unselected package libsynctex2:amd64. 244s Preparing to unpack .../159-libsynctex2_2024.20240313.70630+ds-6_amd64.deb ... 244s Unpacking libsynctex2:amd64 (2024.20240313.70630+ds-6) ... 244s Selecting previously unselected package libtcl8.6:amd64. 244s Preparing to unpack .../160-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 244s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 244s Selecting previously unselected package libteckit0:amd64. 244s Preparing to unpack .../161-libteckit0_2.5.12+ds1-1_amd64.deb ... 244s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 244s Selecting previously unselected package libtexlua53-5:amd64. 244s Preparing to unpack .../162-libtexlua53-5_2024.20240313.70630+ds-6_amd64.deb ... 244s Unpacking libtexlua53-5:amd64 (2024.20240313.70630+ds-6) ... 244s Selecting previously unselected package libjbig0:amd64. 244s Preparing to unpack .../163-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 244s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 244s Selecting previously unselected package libwebp7:amd64. 244s Preparing to unpack .../164-libwebp7_1.5.0-0.1_amd64.deb ... 244s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 244s Selecting previously unselected package libtiff6:amd64. 244s Preparing to unpack .../165-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 244s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 244s Selecting previously unselected package libxft2:amd64. 244s Preparing to unpack .../166-libxft2_2.3.6-1build1_amd64.deb ... 244s Unpacking libxft2:amd64 (2.3.6-1build1) ... 244s Selecting previously unselected package libxss1:amd64. 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Unpacking libxaw7:amd64 (2:1.0.16-1) ... 244s Selecting previously unselected package libxi6:amd64. 244s Preparing to unpack .../173-libxi6_2%3a1.8.2-1_amd64.deb ... 244s Unpacking libxi6:amd64 (2:1.8.2-1) ... 244s Selecting previously unselected package libzzip-0-13t64:amd64. 244s Preparing to unpack .../174-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 244s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 244s Selecting previously unselected package zip. 244s Preparing to unpack .../175-zip_3.0-14ubuntu2_amd64.deb ... 244s Unpacking zip (3.0-14ubuntu2) ... 244s Selecting previously unselected package unzip. 244s Preparing to unpack .../176-unzip_6.0-28ubuntu6_amd64.deb ... 244s Unpacking unzip (6.0-28ubuntu6) ... 244s Selecting previously unselected package xdg-utils. 244s Preparing to unpack .../177-xdg-utils_1.2.1-2ubuntu1_all.deb ... 244s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 244s Selecting previously unselected package r-base-core. 244s Preparing to unpack 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unselected package pandoc-data. 245s Preparing to unpack .../184-pandoc-data_3.1.11.1-3build1_all.deb ... 245s Unpacking pandoc-data (3.1.11.1-3build1) ... 245s Selecting previously unselected package pandoc. 245s Preparing to unpack .../185-pandoc_3.1.11.1+ds-2_amd64.deb ... 245s Unpacking pandoc (3.1.11.1+ds-2) ... 246s Selecting previously unselected package liblzma-dev:amd64. 246s Preparing to unpack .../186-liblzma-dev_5.6.4-1_amd64.deb ... 246s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 246s Selecting previously unselected package libtirpc-dev:amd64. 246s Preparing to unpack .../187-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 246s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 246s Selecting previously unselected package r-base-dev. 246s Preparing to unpack .../188-r-base-dev_4.4.3-1_all.deb ... 246s Unpacking r-base-dev (4.4.3-1) ... 246s Selecting previously unselected package pkg-r-autopkgtest. 246s Preparing to unpack .../189-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 246s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 246s Selecting previously unselected package r-bioc-biocgenerics. 246s Preparing to unpack .../190-r-bioc-biocgenerics_0.52.0-2_all.deb ... 246s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 246s Selecting previously unselected package r-bioc-alabaster.schemas. 246s Preparing to unpack .../191-r-bioc-alabaster.schemas_1.6.0+ds-2_all.deb ... 246s Unpacking r-bioc-alabaster.schemas (1.6.0+ds-2) ... 246s Selecting previously unselected package r-bioc-s4vectors. 246s Preparing to unpack .../192-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 246s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 246s Selecting previously unselected package r-bioc-rhdf5lib. 246s Preparing to unpack .../193-r-bioc-rhdf5lib_1.28.0+dfsg-2build1_amd64.deb ... 246s Unpacking r-bioc-rhdf5lib (1.28.0+dfsg-2build1) ... 246s Selecting previously unselected package r-bioc-rhdf5filters. 246s Preparing to unpack .../194-r-bioc-rhdf5filters_1.18.0+dfsg-2_amd64.deb ... 246s Unpacking r-bioc-rhdf5filters (1.18.0+dfsg-2) ... 246s Selecting previously unselected package r-bioc-rhdf5. 246s Preparing to unpack .../195-r-bioc-rhdf5_2.50.2+dfsg-1build1_amd64.deb ... 246s Unpacking r-bioc-rhdf5 (2.50.2+dfsg-1build1) ... 246s Selecting previously unselected package r-cran-jsonlite. 246s Preparing to unpack .../196-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 246s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 246s Selecting previously unselected package r-cran-pkgkitten. 246s Preparing to unpack .../197-r-cran-pkgkitten_0.2.4-1_all.deb ... 246s Unpacking r-cran-pkgkitten (0.2.4-1) ... 246s Selecting previously unselected package r-cran-rcpp. 246s Preparing to unpack .../198-r-cran-rcpp_1.0.14-1_amd64.deb ... 246s Unpacking r-cran-rcpp (1.0.14-1) ... 246s Selecting previously unselected package r-bioc-alabaster.base. 247s Preparing to unpack .../199-r-bioc-alabaster.base_1.6.1+ds-2build1_amd64.deb ... 247s Unpacking r-bioc-alabaster.base (1.6.1+ds-2build1) ... 247s Selecting previously unselected package r-cran-lattice. 247s Preparing to unpack .../200-r-cran-lattice_0.22-6-1_amd64.deb ... 247s Unpacking r-cran-lattice (0.22-6-1) ... 247s Selecting previously unselected package r-cran-matrix. 247s Preparing to unpack .../201-r-cran-matrix_1.7-3-1_amd64.deb ... 247s Unpacking r-cran-matrix (1.7-3-1) ... 247s Selecting previously unselected package r-cran-matrixstats. 247s Preparing to unpack .../202-r-cran-matrixstats_1.5.0-1_amd64.deb ... 247s Unpacking r-cran-matrixstats (1.5.0-1) ... 247s Selecting previously unselected package r-bioc-matrixgenerics. 247s Preparing to unpack .../203-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 247s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 247s Selecting previously unselected package r-bioc-iranges. 247s Preparing to unpack .../204-r-bioc-iranges_2.40.1-2_amd64.deb ... 247s Unpacking r-bioc-iranges (2.40.1-2) ... 247s Selecting previously unselected package r-cran-abind. 247s Preparing to unpack .../205-r-cran-abind_1.4-8-1_all.deb ... 247s Unpacking r-cran-abind (1.4-8-1) ... 247s Selecting previously unselected package r-cran-crayon. 247s Preparing to unpack .../206-r-cran-crayon_1.5.3-1_all.deb ... 247s Unpacking r-cran-crayon (1.5.3-1) ... 247s Selecting previously unselected package r-bioc-s4arrays. 247s Preparing to unpack .../207-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 247s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 247s Selecting previously unselected package r-bioc-zlibbioc. 247s Preparing to unpack .../208-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 247s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 247s Selecting previously unselected package r-bioc-xvector. 247s Preparing to unpack .../209-r-bioc-xvector_0.46.0-2_amd64.deb ... 247s Unpacking r-bioc-xvector (0.46.0-2) ... 247s Selecting previously unselected package r-bioc-sparsearray. 247s Preparing to unpack .../210-r-bioc-sparsearray_1.6.2+dfsg-1_amd64.deb ... 247s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 247s Selecting previously unselected package r-bioc-delayedarray. 247s Preparing to unpack .../211-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 247s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 247s Selecting previously unselected package r-bioc-hdf5array. 247s Preparing to unpack .../212-r-bioc-hdf5array_1.34.0-2build1_amd64.deb ... 247s Unpacking r-bioc-hdf5array (1.34.0-2build1) ... 247s Selecting previously unselected package r-bioc-alabaster.matrix. 247s Preparing to unpack .../213-r-bioc-alabaster.matrix_1.6.1+ds-2_amd64.deb ... 247s Unpacking r-bioc-alabaster.matrix (1.6.1+ds-2) ... 247s Selecting previously unselected package r-cran-curl. 247s Preparing to unpack .../214-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 247s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 247s Selecting previously unselected package r-cran-mime. 247s Preparing to unpack .../215-r-cran-mime_0.12-2_amd64.deb ... 247s Unpacking r-cran-mime (0.12-2) ... 247s Selecting previously unselected package r-cran-sys. 247s Preparing to unpack .../216-r-cran-sys_3.4.3-1_amd64.deb ... 247s Unpacking r-cran-sys (3.4.3-1) ... 247s Selecting previously unselected package r-cran-askpass. 247s Preparing to unpack .../217-r-cran-askpass_1.2.1-1_amd64.deb ... 247s Unpacking r-cran-askpass (1.2.1-1) ... 247s Selecting previously unselected package r-cran-openssl. 247s Preparing to unpack .../218-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 247s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 248s Selecting previously unselected package r-cran-r6. 248s Preparing to unpack .../219-r-cran-r6_2.6.1-1_all.deb ... 248s Unpacking r-cran-r6 (2.6.1-1) ... 248s Selecting previously unselected package r-cran-httr. 248s Preparing to unpack .../220-r-cran-httr_1.4.7+dfsg-1_all.deb ... 248s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 248s Selecting previously unselected package r-bioc-ucsc.utils. 248s Preparing to unpack .../221-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 248s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 248s Selecting previously unselected package r-bioc-genomeinfodbdata. 248s Preparing to unpack .../222-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 248s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 248s Selecting previously unselected package r-bioc-genomeinfodb. 248s Preparing to unpack .../223-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 248s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 248s Selecting previously unselected package r-bioc-genomicranges. 248s Preparing to unpack .../224-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 248s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 248s Selecting previously unselected package r-bioc-alabaster.ranges. 248s Preparing to unpack .../225-r-bioc-alabaster.ranges_1.6.0+ds-2_all.deb ... 248s Unpacking r-bioc-alabaster.ranges (1.6.0+ds-2) ... 248s Selecting previously unselected package r-bioc-biobase. 248s Preparing to unpack .../226-r-bioc-biobase_2.66.0-2_amd64.deb ... 248s Unpacking r-bioc-biobase (2.66.0-2) ... 248s Selecting previously unselected package r-bioc-summarizedexperiment. 248s Preparing to unpack .../227-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 248s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 248s Selecting previously unselected package r-bioc-singlecellexperiment. 248s Preparing to unpack .../228-r-bioc-singlecellexperiment_1.28.1+ds-2_all.deb ... 248s Unpacking r-bioc-singlecellexperiment (1.28.1+ds-2) ... 248s Selecting previously unselected package r-bioc-alabaster.se. 248s Preparing to unpack .../229-r-bioc-alabaster.se_1.6.0+ds-2_all.deb ... 248s Unpacking r-bioc-alabaster.se (1.6.0+ds-2) ... 248s Selecting previously unselected package r-bioc-alabaster.sce. 248s Preparing to unpack .../230-r-bioc-alabaster.sce_1.6.0+ds-2_all.deb ... 248s Unpacking r-bioc-alabaster.sce (1.6.0+ds-2) ... 248s Selecting previously unselected package r-cran-dbi. 248s Preparing to unpack .../231-r-cran-dbi_1.2.3-1_all.deb ... 248s Unpacking r-cran-dbi (1.2.3-1) ... 248s Selecting previously unselected package r-cran-bit. 248s Preparing to unpack .../232-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 248s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 248s Selecting previously unselected package r-cran-bit64. 248s Preparing to unpack .../233-r-cran-bit64_4.6.0-1-1ubuntu2_amd64.deb ... 248s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 248s Selecting previously unselected package r-cran-rlang. 248s Preparing to unpack .../234-r-cran-rlang_1.1.5-1_amd64.deb ... 248s Unpacking r-cran-rlang (1.1.5-1) ... 248s Selecting previously unselected package r-cran-cli. 248s Preparing to unpack .../235-r-cran-cli_3.6.4-1_amd64.deb ... 248s Unpacking r-cran-cli (3.6.4-1) ... 248s Selecting previously unselected package r-cran-glue. 248s Preparing to unpack .../236-r-cran-glue_1.8.0-1_amd64.deb ... 248s Unpacking r-cran-glue (1.8.0-1) ... 249s Selecting previously unselected package r-cran-lifecycle. 249s Preparing to unpack .../237-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 249s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 249s Selecting previously unselected package r-cran-vctrs. 249s Preparing to unpack .../238-r-cran-vctrs_0.6.5-1_amd64.deb ... 249s Unpacking r-cran-vctrs (0.6.5-1) ... 249s Selecting previously unselected package r-cran-blob. 249s Preparing to unpack .../239-r-cran-blob_1.2.4-1_all.deb ... 249s Unpacking r-cran-blob (1.2.4-1) ... 249s Selecting previously unselected package r-cran-fastmap. 249s Preparing to unpack .../240-r-cran-fastmap_1.2.0-1_amd64.deb ... 249s Unpacking r-cran-fastmap (1.2.0-1) ... 249s Selecting previously unselected package r-cran-cachem. 249s Preparing to unpack .../241-r-cran-cachem_1.1.0-1_amd64.deb ... 249s Unpacking r-cran-cachem (1.1.0-1) ... 249s Selecting previously unselected package r-cran-memoise. 249s Preparing to unpack .../242-r-cran-memoise_2.0.1-1_all.deb ... 249s Unpacking r-cran-memoise (2.0.1-1) ... 249s Selecting previously unselected package r-cran-pkgconfig. 249s Preparing to unpack .../243-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 249s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 249s Selecting previously unselected package r-cran-plogr. 249s Preparing to unpack .../244-r-cran-plogr_0.2.0-3build1_all.deb ... 249s Unpacking r-cran-plogr (0.2.0-3build1) ... 249s Selecting previously unselected package r-cran-cpp11. 249s Preparing to unpack .../245-r-cran-cpp11_0.5.2-1_all.deb ... 249s Unpacking r-cran-cpp11 (0.5.2-1) ... 249s Selecting previously unselected package r-cran-rsqlite. 249s Preparing to unpack .../246-r-cran-rsqlite_2.3.9-1_amd64.deb ... 249s Unpacking r-cran-rsqlite (2.3.9-1) ... 249s Selecting previously unselected package r-cran-png. 249s Preparing to unpack .../247-r-cran-png_0.1-8-1build2_amd64.deb ... 249s Unpacking r-cran-png (0.1-8-1build2) ... 249s Selecting previously unselected package r-bioc-biostrings. 249s Preparing to unpack .../248-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 249s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 249s Selecting previously unselected package r-bioc-keggrest. 249s Preparing to unpack .../249-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 249s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 249s Selecting previously unselected package r-bioc-annotationdbi. 249s Preparing to unpack .../250-r-bioc-annotationdbi_1.68.0-2_all.deb ... 249s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 249s Selecting previously unselected package r-cran-lazyeval. 249s Preparing to unpack .../251-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 249s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 249s Selecting previously unselected package r-bioc-annotationfilter. 249s Preparing to unpack .../252-r-bioc-annotationfilter_1.30.0+dfsg-2_all.deb ... 249s Unpacking r-bioc-annotationfilter (1.30.0+dfsg-2) ... 249s Selecting previously unselected package r-cran-generics. 249s Preparing to unpack .../253-r-cran-generics_0.1.3-1_all.deb ... 249s Unpacking r-cran-generics (0.1.3-1) ... 249s Selecting previously unselected package r-cran-magrittr. 249s Preparing to unpack .../254-r-cran-magrittr_2.0.3-1_amd64.deb ... 249s Unpacking r-cran-magrittr (2.0.3-1) ... 249s Selecting previously unselected package r-cran-utf8. 249s Preparing to unpack .../255-r-cran-utf8_1.2.4-1_amd64.deb ... 249s Unpacking r-cran-utf8 (1.2.4-1) ... 249s Selecting previously unselected package r-cran-pillar. 249s Preparing to unpack .../256-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 249s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 249s Selecting previously unselected package r-cran-fansi. 249s Preparing to unpack .../257-r-cran-fansi_1.0.5-1_amd64.deb ... 249s Unpacking r-cran-fansi (1.0.5-1) ... 249s Selecting previously unselected package r-cran-tibble. 249s Preparing to unpack .../258-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 249s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 249s Selecting previously unselected package r-cran-withr. 250s Preparing to unpack .../259-r-cran-withr_3.0.2+dfsg-1_all.deb ... 250s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 250s Selecting previously unselected package r-cran-tidyselect. 250s Preparing to unpack .../260-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 250s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 250s Selecting previously unselected package r-cran-dplyr. 250s Preparing to unpack .../261-r-cran-dplyr_1.1.4-4_amd64.deb ... 250s Unpacking r-cran-dplyr (1.1.4-4) ... 250s Selecting previously unselected package r-cran-purrr. 250s Preparing to unpack .../262-r-cran-purrr_1.0.4-1_amd64.deb ... 250s Unpacking r-cran-purrr (1.0.4-1) ... 250s Selecting previously unselected package r-cran-stringi. 250s Preparing to unpack .../263-r-cran-stringi_1.8.4-1build1_amd64.deb ... 250s Unpacking r-cran-stringi (1.8.4-1build1) ... 250s Selecting previously unselected package r-cran-stringr. 250s Preparing to unpack .../264-r-cran-stringr_1.5.1-1_all.deb ... 250s Unpacking r-cran-stringr (1.5.1-1) ... 250s Selecting previously unselected package r-cran-tidyr. 250s Preparing to unpack .../265-r-cran-tidyr_1.3.1-1_amd64.deb ... 250s Unpacking r-cran-tidyr (1.3.1-1) ... 250s Selecting previously unselected package r-cran-dbplyr. 250s Preparing to unpack .../266-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ... 250s Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ... 250s Selecting previously unselected package r-cran-filelock. 250s Preparing to unpack .../267-r-cran-filelock_1.0.3-1_amd64.deb ... 250s Unpacking r-cran-filelock (1.0.3-1) ... 250s Selecting previously unselected package r-bioc-biocfilecache. 250s Preparing to unpack .../268-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 250s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 250s Selecting previously unselected package r-cran-biocmanager. 250s Preparing to unpack .../269-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 250s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 250s Selecting previously unselected package r-bioc-biocversion. 250s Preparing to unpack .../270-r-bioc-biocversion_3.20.0-2_all.deb ... 250s Unpacking r-bioc-biocversion (3.20.0-2) ... 250s Selecting previously unselected package r-cran-rappdirs. 250s Preparing to unpack .../271-r-cran-rappdirs_0.3.3-1_amd64.deb ... 250s Unpacking r-cran-rappdirs (0.3.3-1) ... 250s Selecting previously unselected package r-cran-yaml. 250s Preparing to unpack .../272-r-cran-yaml_2.3.10-1_amd64.deb ... 250s Unpacking r-cran-yaml (2.3.10-1) ... 250s Selecting previously unselected package r-bioc-annotationhub. 250s Preparing to unpack .../273-r-bioc-annotationhub_3.14.0+dfsg-2_all.deb ... 250s Unpacking r-bioc-annotationhub (3.14.0+dfsg-2) ... 250s Selecting previously unselected package r-bioc-assorthead. 250s Preparing to unpack .../274-r-bioc-assorthead_1.0.1+ds-2_all.deb ... 250s Unpacking r-bioc-assorthead (1.0.1+ds-2) ... 250s Selecting previously unselected package r-bioc-beachmat. 250s Preparing to unpack .../275-r-bioc-beachmat_2.22.0+ds-2_amd64.deb ... 250s Unpacking r-bioc-beachmat (2.22.0+ds-2) ... 250s Selecting previously unselected package r-bioc-biocio. 250s Preparing to unpack .../276-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 250s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 250s Selecting previously unselected package r-bioc-biocneighbors. 250s Preparing to unpack .../277-r-bioc-biocneighbors_2.0.1+ds-2_amd64.deb ... 250s Unpacking r-bioc-biocneighbors (2.0.1+ds-2) ... 250s Selecting previously unselected package r-cran-formatr. 250s Preparing to unpack .../278-r-cran-formatr_1.14-2_all.deb ... 250s Unpacking r-cran-formatr (1.14-2) ... 251s Selecting previously unselected package r-cran-lambda.r. 251s Preparing to unpack .../279-r-cran-lambda.r_1.2.4-2build1_all.deb ... 251s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 251s Selecting previously unselected package r-cran-futile.options. 251s Preparing to unpack .../280-r-cran-futile.options_1.0.1-3build1_all.deb ... 251s Unpacking r-cran-futile.options (1.0.1-3build1) ... 251s Selecting previously unselected package r-cran-futile.logger. 251s Preparing to unpack .../281-r-cran-futile.logger_1.4.3-4build1_all.deb ... 251s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 251s Selecting previously unselected package r-cran-snow. 251s Preparing to unpack .../282-r-cran-snow_1%3a0.4.4-2_all.deb ... 251s Unpacking r-cran-snow (1:0.4.4-2) ... 251s Selecting previously unselected package r-cran-codetools. 251s Preparing to unpack .../283-r-cran-codetools_0.2-20-1_all.deb ... 251s Unpacking r-cran-codetools (0.2-20-1) ... 251s Selecting previously unselected package r-cran-bh. 251s Preparing to unpack .../284-r-cran-bh_1.84.0-1_all.deb ... 251s Unpacking r-cran-bh (1.84.0-1) ... 251s Selecting previously unselected package r-bioc-biocparallel. 251s Preparing to unpack .../285-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 251s Unpacking r-bioc-biocparallel (1.40.0-2) ... 251s Selecting previously unselected package r-bioc-scaledmatrix. 251s Preparing to unpack .../286-r-bioc-scaledmatrix_1.14.0+dfsg-2_all.deb ... 251s Unpacking r-bioc-scaledmatrix (1.14.0+dfsg-2) ... 251s Selecting previously unselected package r-cran-irlba. 251s Preparing to unpack .../287-r-cran-irlba_2.3.5.1-4_amd64.deb ... 251s Unpacking r-cran-irlba (2.3.5.1-4) ... 251s Selecting previously unselected package r-cran-rsvd. 251s Preparing to unpack .../288-r-cran-rsvd_1.0.5-1_all.deb ... 251s Unpacking r-cran-rsvd (1.0.5-1) ... 251s Selecting previously unselected package r-bioc-biocsingular. 251s Preparing to unpack .../289-r-bioc-biocsingular_1.22.0+ds-2_amd64.deb ... 251s Unpacking r-bioc-biocsingular (1.22.0+ds-2) ... 251s Selecting previously unselected package r-cran-base64enc. 251s Preparing to unpack .../290-r-cran-base64enc_0.1-3-3_amd64.deb ... 251s Unpacking r-cran-base64enc (0.1-3-3) ... 251s Selecting previously unselected package r-cran-digest. 251s Preparing to unpack .../291-r-cran-digest_0.6.37-1_amd64.deb ... 251s Unpacking r-cran-digest (0.6.37-1) ... 251s Selecting previously unselected package r-cran-htmltools. 251s Preparing to unpack .../292-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 251s Unpacking r-cran-htmltools (0.5.8.1-1) ... 251s Selecting previously unselected package r-cran-evaluate. 251s Preparing to unpack .../293-r-cran-evaluate_1.0.3-1_all.deb ... 251s Unpacking r-cran-evaluate (1.0.3-1) ... 251s Selecting previously unselected package r-cran-xfun. 251s Preparing to unpack .../294-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 251s Unpacking r-cran-xfun (0.51+dfsg-1) ... 251s Selecting previously unselected package r-cran-highr. 251s Preparing to unpack .../295-r-cran-highr_0.11+dfsg-1_all.deb ... 251s Unpacking r-cran-highr (0.11+dfsg-1) ... 251s Selecting previously unselected package libjs-mathjax. 251s Preparing to unpack .../296-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 251s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 252s Selecting previously unselected package r-cran-knitr. 252s Preparing to unpack .../297-r-cran-knitr_1.49+dfsg-1_all.deb ... 252s Unpacking r-cran-knitr (1.49+dfsg-1) ... 252s Selecting previously unselected package r-cran-jquerylib. 252s Preparing to unpack .../298-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 252s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 252s Selecting previously unselected package r-cran-fs. 252s Preparing to unpack .../299-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 252s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 252s Selecting previously unselected package r-cran-sass. 252s Preparing to unpack .../300-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 252s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 252s Selecting previously unselected package r-cran-bslib. 252s Preparing to unpack .../301-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 252s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 252s Selecting previously unselected package r-cran-fontawesome. 252s Preparing to unpack .../302-r-cran-fontawesome_0.5.3-1_all.deb ... 252s Unpacking r-cran-fontawesome (0.5.3-1) ... 252s Selecting previously unselected package r-cran-tinytex. 253s Preparing to unpack .../303-r-cran-tinytex_0.56-1_all.deb ... 253s Unpacking r-cran-tinytex (0.56-1) ... 253s Selecting previously unselected package libjs-modernizr. 253s Preparing to unpack .../304-libjs-modernizr_3.13.0-0.1_all.deb ... 253s Unpacking libjs-modernizr (3.13.0-0.1) ... 253s Selecting previously unselected package r-cran-later. 253s Preparing to unpack .../305-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 253s Unpacking r-cran-later (1.4.1+dfsg-1) ... 253s Selecting previously unselected package r-cran-promises. 253s Preparing to unpack .../306-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 253s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 253s Selecting previously unselected package r-cran-httpuv. 253s Preparing to unpack .../307-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 253s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 253s Selecting previously unselected package r-cran-xtable. 253s Preparing to unpack .../308-r-cran-xtable_1%3a1.8-4-2_all.deb ... 253s Unpacking r-cran-xtable (1:1.8-4-2) ... 253s Selecting previously unselected package r-cran-sourcetools. 253s Preparing to unpack .../309-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 253s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 253s Selecting previously unselected package r-cran-commonmark. 253s Preparing to unpack .../310-r-cran-commonmark_1.9.2-2_amd64.deb ... 253s Unpacking r-cran-commonmark (1.9.2-2) ... 253s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 253s Preparing to unpack .../311-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 253s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 253s Selecting previously unselected package r-cran-shiny. 253s Preparing to unpack .../312-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 253s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 253s Selecting previously unselected package r-cran-rmarkdown. 253s Preparing to unpack .../313-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 253s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 253s Selecting previously unselected package r-cran-bookdown. 253s Preparing to unpack .../314-r-cran-bookdown_0.42+dfsg-1_all.deb ... 253s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 253s Selecting previously unselected package tex-common. 253s Preparing to unpack .../315-tex-common_6.19_all.deb ... 253s Unpacking tex-common (6.19) ... 253s Selecting previously unselected package t1utils. 253s Preparing to unpack .../316-t1utils_1.41-4build3_amd64.deb ... 253s Unpacking t1utils (1.41-4build3) ... 253s Selecting previously unselected package texlive-binaries. 253s Preparing to unpack .../317-texlive-binaries_2024.20240313.70630+ds-6_amd64.deb ... 253s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ... 253s Selecting previously unselected package texlive-base. 253s Preparing to unpack .../318-texlive-base_2024.20250114-1_all.deb ... 253s Unpacking texlive-base (2024.20250114-1) ... 254s Selecting previously unselected package texlive-latex-base. 254s Preparing to unpack .../319-texlive-latex-base_2024.20250114-1_all.deb ... 254s Unpacking texlive-latex-base (2024.20250114-1) ... 255s Selecting previously unselected package texlive-bibtex-extra. 255s Preparing to unpack .../320-texlive-bibtex-extra_2024.20250114-1_all.deb ... 255s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 256s Selecting previously unselected package r-bioc-biocstyle. 256s Preparing to unpack .../321-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 256s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 256s Selecting previously unselected package r-cran-cluster. 256s Preparing to unpack .../322-r-cran-cluster_2.1.8.1-1_amd64.deb ... 256s Unpacking r-cran-cluster (2.1.8.1-1) ... 256s Selecting previously unselected package r-cran-igraph. 256s Preparing to unpack .../323-r-cran-igraph_2.1.4-1_amd64.deb ... 256s Unpacking r-cran-igraph (2.1.4-1) ... 257s Selecting previously unselected package r-bioc-bluster. 257s Preparing to unpack .../324-r-bioc-bluster_1.16.0+dfsg-2_amd64.deb ... 257s Unpacking r-bioc-bluster (1.16.0+dfsg-2) ... 257s Selecting previously unselected package r-bioc-sparsematrixstats. 257s Preparing to unpack .../325-r-bioc-sparsematrixstats_1.18.0+dfsg-2_amd64.deb ... 257s Unpacking r-bioc-sparsematrixstats (1.18.0+dfsg-2) ... 257s Selecting previously unselected package r-bioc-delayedmatrixstats. 257s Preparing to unpack .../326-r-bioc-delayedmatrixstats_1.28.1+ds-1_all.deb ... 257s Unpacking r-bioc-delayedmatrixstats (1.28.1+ds-1) ... 257s Selecting previously unselected package r-cran-statmod. 257s Preparing to unpack .../327-r-cran-statmod_1.5.0-1_amd64.deb ... 257s Unpacking r-cran-statmod (1.5.0-1) ... 257s Selecting previously unselected package r-bioc-limma. 257s Preparing to unpack .../328-r-bioc-limma_3.62.2+dfsg-1_amd64.deb ... 257s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 257s Selecting previously unselected package r-cran-locfit. 257s Preparing to unpack .../329-r-cran-locfit_1.5-9.12-1_amd64.deb ... 257s Unpacking r-cran-locfit (1.5-9.12-1) ... 257s Selecting previously unselected package r-bioc-edger. 257s Preparing to unpack .../330-r-bioc-edger_4.4.2+dfsg-1_amd64.deb ... 257s Unpacking r-bioc-edger (4.4.2+dfsg-1) ... 257s Selecting previously unselected package r-cran-xml. 257s Preparing to unpack .../331-r-cran-xml_3.99-0.18-1_amd64.deb ... 257s Unpacking r-cran-xml (3.99-0.18-1) ... 257s Selecting previously unselected package r-cran-bitops. 257s Preparing to unpack .../332-r-cran-bitops_1.0-9-1_amd64.deb ... 257s Unpacking r-cran-bitops (1.0-9-1) ... 257s Selecting previously unselected package r-bioc-rhtslib. 257s Preparing to unpack .../333-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ... 257s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 257s Selecting previously unselected package r-bioc-rsamtools. 257s Preparing to unpack .../334-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ... 257s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 257s Selecting previously unselected package r-bioc-genomicalignments. 257s Preparing to unpack .../335-r-bioc-genomicalignments_1.42.0-2_amd64.deb ... 257s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 257s Selecting previously unselected package r-cran-rcurl. 257s Preparing to unpack .../336-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 257s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 257s Selecting previously unselected package r-cran-rjson. 257s Preparing to unpack .../337-r-cran-rjson_0.2.23-1_amd64.deb ... 257s Unpacking r-cran-rjson (0.2.23-1) ... 257s Selecting previously unselected package r-cran-restfulr. 257s Preparing to unpack .../338-r-cran-restfulr_0.0.15-1_amd64.deb ... 257s Unpacking r-cran-restfulr (0.0.15-1) ... 257s Selecting previously unselected package r-bioc-rtracklayer. 257s Preparing to unpack .../339-r-bioc-rtracklayer_1.66.0-2_amd64.deb ... 257s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 257s Selecting previously unselected package r-bioc-genomicfeatures. 257s Preparing to unpack .../340-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ... 257s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 257s Selecting previously unselected package r-bioc-protgenerics. 257s Preparing to unpack .../341-r-bioc-protgenerics_1.38.0-2_all.deb ... 257s Unpacking r-bioc-protgenerics (1.38.0-2) ... 257s Selecting previously unselected package r-bioc-ensembldb. 257s Preparing to unpack .../342-r-bioc-ensembldb_2.30.0+dfsg-3_all.deb ... 257s Unpacking r-bioc-ensembldb (2.30.0+dfsg-3) ... 258s Selecting previously unselected package r-bioc-experimenthub. 258s Preparing to unpack .../343-r-bioc-experimenthub_2.14.0+ds-2_all.deb ... 258s Unpacking r-bioc-experimenthub (2.14.0+ds-2) ... 258s Selecting previously unselected package r-cran-httr2. 258s Preparing to unpack .../344-r-cran-httr2_1.1.1-1_all.deb ... 258s Unpacking r-cran-httr2 (1.1.1-1) ... 258s Selecting previously unselected package r-bioc-gypsum. 258s Preparing to unpack .../345-r-bioc-gypsum_1.2.0+ds-2_all.deb ... 258s Unpacking r-bioc-gypsum (1.2.0+ds-2) ... 258s Selecting previously unselected package r-bioc-metapod. 258s Preparing to unpack .../346-r-bioc-metapod_1.14.0+dfsg-2_amd64.deb ... 258s Unpacking r-bioc-metapod (1.14.0+dfsg-2) ... 258s Selecting previously unselected package r-bioc-scuttle. 258s Preparing to unpack .../347-r-bioc-scuttle_1.16.0+dfsg-3_amd64.deb ... 258s Unpacking r-bioc-scuttle (1.16.0+dfsg-3) ... 258s Selecting previously unselected package r-cran-gtable. 258s Preparing to unpack .../348-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 258s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 258s Selecting previously unselected package r-cran-isoband. 258s Preparing to unpack .../349-r-cran-isoband_0.2.7-1_amd64.deb ... 258s Unpacking r-cran-isoband (0.2.7-1) ... 258s Selecting previously unselected package r-cran-mass. 258s Preparing to unpack .../350-r-cran-mass_7.3-64-1_amd64.deb ... 258s Unpacking r-cran-mass (7.3-64-1) ... 258s Selecting previously unselected package r-cran-nlme. 258s Preparing to unpack .../351-r-cran-nlme_3.1.167-1_amd64.deb ... 258s Unpacking r-cran-nlme (3.1.167-1) ... 258s Selecting previously unselected package r-cran-mgcv. 258s Preparing to unpack .../352-r-cran-mgcv_1.9-1-1_amd64.deb ... 258s Unpacking r-cran-mgcv (1.9-1-1) ... 258s Selecting previously unselected package r-cran-farver. 258s Preparing to unpack .../353-r-cran-farver_2.1.2-1_amd64.deb ... 258s Unpacking r-cran-farver (2.1.2-1) ... 258s Selecting previously unselected package r-cran-labeling. 258s Preparing to unpack .../354-r-cran-labeling_0.4.3-1_all.deb ... 258s Unpacking r-cran-labeling (0.4.3-1) ... 258s Selecting previously unselected package r-cran-colorspace. 258s Preparing to unpack .../355-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 258s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 258s Selecting previously unselected package r-cran-munsell. 258s Preparing to unpack .../356-r-cran-munsell_0.5.1-1_all.deb ... 258s Unpacking r-cran-munsell (0.5.1-1) ... 258s Selecting previously unselected package r-cran-rcolorbrewer. 258s Preparing to unpack .../357-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 258s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 258s Selecting previously unselected package r-cran-viridislite. 258s Preparing to unpack .../358-r-cran-viridislite_0.4.2-2_all.deb ... 258s Unpacking r-cran-viridislite (0.4.2-2) ... 258s Selecting previously unselected package r-cran-scales. 258s Preparing to unpack .../359-r-cran-scales_1.3.0-1_all.deb ... 258s Unpacking r-cran-scales (1.3.0-1) ... 258s Selecting previously unselected package r-cran-ggplot2. 258s Preparing to unpack .../360-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 258s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 259s Selecting previously unselected package r-cran-beeswarm. 259s Preparing to unpack .../361-r-cran-beeswarm_0.4.0-1_amd64.deb ... 259s Unpacking r-cran-beeswarm (0.4.0-1) ... 259s Selecting previously unselected package r-cran-vipor. 259s Preparing to unpack .../362-r-cran-vipor_0.4.7-1_all.deb ... 259s Unpacking r-cran-vipor (0.4.7-1) ... 259s Selecting previously unselected package r-cran-ggbeeswarm. 259s Preparing to unpack .../363-r-cran-ggbeeswarm_0.7.2-1_all.deb ... 259s Unpacking r-cran-ggbeeswarm (0.7.2-1) ... 259s Selecting previously unselected package r-cran-gridextra. 259s Preparing to unpack .../364-r-cran-gridextra_2.3-3build1_all.deb ... 259s Unpacking r-cran-gridextra (2.3-3build1) ... 259s Selecting previously unselected package r-cran-viridis. 259s Preparing to unpack .../365-r-cran-viridis_0.6.5-1_all.deb ... 259s Unpacking r-cran-viridis (0.6.5-1) ... 259s Selecting previously unselected package r-cran-rtsne. 259s Preparing to unpack .../366-r-cran-rtsne_0.17-1_amd64.deb ... 259s Unpacking r-cran-rtsne (0.17-1) ... 259s Selecting previously unselected package r-cran-rcppeigen. 259s Preparing to unpack .../367-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 259s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 259s Selecting previously unselected package r-cran-rcppml. 259s Preparing to unpack .../368-r-cran-rcppml_0.3.7-2_amd64.deb ... 259s Unpacking r-cran-rcppml (0.3.7-2) ... 259s Selecting previously unselected package r-cran-fnn. 259s Preparing to unpack .../369-r-cran-fnn_1.1.4.1-1_amd64.deb ... 259s Unpacking r-cran-fnn (1.1.4.1-1) ... 259s Selecting previously unselected package r-cran-rcppannoy. 259s Preparing to unpack .../370-r-cran-rcppannoy_0.0.22-1_amd64.deb ... 259s Unpacking r-cran-rcppannoy (0.0.22-1) ... 259s Selecting previously unselected package r-cran-rspectra. 259s Preparing to unpack .../371-r-cran-rspectra_0.16-2-1_amd64.deb ... 259s Unpacking r-cran-rspectra (0.16-2-1) ... 259s Selecting previously unselected package r-cran-sitmo. 259s Preparing to unpack .../372-r-cran-sitmo_2.0.2-1_amd64.deb ... 259s Unpacking r-cran-sitmo (2.0.2-1) ... 259s Selecting previously unselected package r-cran-dqrng. 259s Preparing to unpack .../373-r-cran-dqrng_0.3.2+dfsg-1_amd64.deb ... 259s Unpacking r-cran-dqrng (0.3.2+dfsg-1) ... 259s Selecting previously unselected package r-cran-rcppprogress. 259s Preparing to unpack .../374-r-cran-rcppprogress_0.4.2-2build1_all.deb ... 259s Unpacking r-cran-rcppprogress (0.4.2-2build1) ... 259s Selecting previously unselected package r-cran-uwot. 259s Preparing to unpack .../375-r-cran-uwot_0.2.3-1_amd64.deb ... 259s Unpacking r-cran-uwot (0.2.3-1) ... 259s Selecting previously unselected package r-cran-pheatmap. 259s Preparing to unpack .../376-r-cran-pheatmap_1.0.12-2build1_all.deb ... 259s Unpacking r-cran-pheatmap (1.0.12-2build1) ... 259s Selecting previously unselected package r-cran-ggrepel. 260s Preparing to unpack .../377-r-cran-ggrepel_0.9.6-1_amd64.deb ... 260s Unpacking r-cran-ggrepel (0.9.6-1) ... 260s Selecting previously unselected package r-cran-cairo. 260s Preparing to unpack .../378-r-cran-cairo_1.6-2-1_amd64.deb ... 260s Unpacking r-cran-cairo (1.6-2-1) ... 260s Selecting previously unselected package r-cran-systemfonts. 260s Preparing to unpack .../379-r-cran-systemfonts_1.2.1-1_amd64.deb ... 260s Unpacking r-cran-systemfonts (1.2.1-1) ... 260s Selecting previously unselected package r-cran-textshaping. 260s Preparing to unpack .../380-r-cran-textshaping_0.3.7-2_amd64.deb ... 260s Unpacking r-cran-textshaping (0.3.7-2) ... 260s Selecting previously unselected package r-cran-ragg. 260s Preparing to unpack .../381-r-cran-ragg_1.3.3-1_amd64.deb ... 260s Unpacking r-cran-ragg (1.3.3-1) ... 260s Selecting previously unselected package r-cran-ggrastr. 260s Preparing to unpack .../382-r-cran-ggrastr_1.0.2-1_all.deb ... 260s Unpacking r-cran-ggrastr (1.0.2-1) ... 260s Selecting previously unselected package r-bioc-scater. 260s Preparing to unpack .../383-r-bioc-scater_1.34.1+ds-1_all.deb ... 260s Unpacking r-bioc-scater (1.34.1+ds-1) ... 260s Selecting previously unselected package r-bioc-scran. 260s Preparing to unpack .../384-r-bioc-scran_1.34.0+dfsg-3_amd64.deb ... 260s Unpacking r-bioc-scran (1.34.0+dfsg-3) ... 260s Selecting previously unselected package r-bioc-scrnaseq. 260s Preparing to unpack .../385-r-bioc-scrnaseq_2.20.0+ds-2_all.deb ... 260s Unpacking r-bioc-scrnaseq (2.20.0+ds-2) ... 260s Selecting previously unselected package r-bioc-singler. 260s Preparing to unpack .../386-r-bioc-singler_2.8.0+ds-3_amd64.deb ... 260s Unpacking r-bioc-singler (2.8.0+ds-3) ... 260s Selecting previously unselected package r-cran-brio. 260s Preparing to unpack .../387-r-cran-brio_1.1.5-1_amd64.deb ... 260s Unpacking r-cran-brio (1.1.5-1) ... 260s Selecting previously unselected package r-cran-ps. 260s Preparing to unpack .../388-r-cran-ps_1.9.0-1_amd64.deb ... 260s Unpacking r-cran-ps (1.9.0-1) ... 260s Selecting previously unselected package r-cran-processx. 260s Preparing to unpack .../389-r-cran-processx_3.8.6-1_amd64.deb ... 260s Unpacking r-cran-processx (3.8.6-1) ... 260s Selecting previously unselected package r-cran-callr. 260s Preparing to unpack .../390-r-cran-callr_3.7.6-1_all.deb ... 260s Unpacking r-cran-callr (3.7.6-1) ... 260s Selecting previously unselected package r-cran-desc. 260s Preparing to unpack .../391-r-cran-desc_1.4.3-1_all.deb ... 260s Unpacking r-cran-desc (1.4.3-1) ... 260s Selecting previously unselected package r-cran-diffobj. 260s Preparing to unpack .../392-r-cran-diffobj_0.3.5-1_amd64.deb ... 260s Unpacking r-cran-diffobj (0.3.5-1) ... 260s Selecting previously unselected package r-cran-pkgbuild. 260s Preparing to unpack .../393-r-cran-pkgbuild_1.4.6-1_all.deb ... 260s Unpacking r-cran-pkgbuild (1.4.6-1) ... 260s Selecting previously unselected package r-cran-rprojroot. 260s Preparing to unpack .../394-r-cran-rprojroot_2.0.4-2_all.deb ... 260s Unpacking r-cran-rprojroot (2.0.4-2) ... 260s Selecting previously unselected package r-cran-pkgload. 260s Preparing to unpack .../395-r-cran-pkgload_1.4.0-1_all.deb ... 260s Unpacking r-cran-pkgload 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up r-bioc-sparsematrixstats (1.18.0+dfsg-2) ... 266s Setting up r-cran-vctrs (0.6.5-1) ... 266s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ... 266s Setting up r-bioc-alabaster.schemas (1.6.0+ds-2) ... 266s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 266s Setting up r-cran-rcppannoy (0.0.22-1) ... 266s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 266s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 266s Setting up r-cran-stringr (1.5.1-1) ... 266s Setting up r-bioc-biocparallel (1.40.0-2) ... 266s Setting up r-cran-callr (3.7.6-1) ... 266s Setting up r-bioc-edger (4.4.2+dfsg-1) ... 266s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 266s Setting up r-cran-desc (1.4.3-1) ... 266s Setting up r-bioc-rhdf5 (2.50.2+dfsg-1build1) ... 266s Setting up r-cran-munsell (0.5.1-1) ... 266s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 266s Setting up r-cran-fontawesome (0.5.3-1) ... 266s Setting up r-cran-igraph (2.1.4-1) ... 266s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 266s Setting up gfortran (4:14.2.0-1ubuntu1) ... 266s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 266s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 266s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 266s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 266s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 266s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 266s Setting up texlive-bibtex-extra (2024.20250114-1) ... 266s Setting up r-cran-rsvd (1.0.5-1) ... 266s Setting up r-cran-httr2 (1.1.1-1) ... 266s Setting up r-cran-systemfonts (1.2.1-1) ... 266s Setting up r-bioc-bluster (1.16.0+dfsg-2) ... 266s Setting up r-cran-httr (1.4.7+dfsg-1) ... 266s Setting up r-bioc-gypsum (1.2.0+ds-2) ... 266s Setting up r-bioc-alabaster.base (1.6.1+ds-2build1) ... 266s Setting up r-cran-gridextra (2.3-3build1) ... 266s Setting up r-cran-scales (1.3.0-1) ... 266s Setting up r-cran-memoise (2.0.1-1) ... 266s Setting up r-cran-promises (1.3.2+dfsg-1) ... 266s Setting up r-cran-purrr (1.0.4-1) ... 266s Setting up r-cran-blob (1.2.4-1) ... 266s Setting up r-bioc-xvector (0.46.0-2) ... 266s Setting up r-cran-pkgbuild (1.4.6-1) ... 266s Setting up r-cran-rcppml (0.3.7-2) ... 266s Setting up r-cran-dplyr (1.1.4-4) ... 266s Setting up r-cran-rspectra (0.16-2-1) ... 266s Setting up r-cran-rsqlite (2.3.9-1) ... 266s Setting up r-cran-uwot (0.2.3-1) ... 266s Setting up r-cran-pheatmap (1.0.12-2build1) ... 266s Setting up r-cran-pkgload (1.4.0-1) ... 266s Setting up r-base-dev (4.4.3-1) ... 266s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 266s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 266s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 266s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 266s 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r-bioc-alabaster.matrix (1.6.1+ds-2) ... 266s Setting up r-cran-ggrastr (1.0.2-1) ... 266s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 266s Setting up r-bioc-beachmat (2.22.0+ds-2) ... 266s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 266s Setting up r-bioc-scaledmatrix (1.14.0+dfsg-2) ... 266s Setting up r-cran-bookdown (0.42+dfsg-1) ... 266s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 266s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 266s Setting up r-bioc-biocsingular (1.22.0+ds-2) ... 266s Setting up r-bioc-alabaster.ranges (1.6.0+ds-2) ... 266s Setting up r-bioc-annotationdbi (1.68.0-2) ... 266s Setting up r-bioc-annotationhub (3.14.0+dfsg-2) ... 266s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 266s Setting up r-bioc-genomicalignments (1.42.0-2) ... 266s Setting up r-bioc-singler (2.8.0+ds-3) ... 266s Setting up r-bioc-alabaster.se (1.6.0+ds-2) ... 266s Setting up r-bioc-rtracklayer (1.66.0-2) ... 266s Setting up r-bioc-singlecellexperiment (1.28.1+ds-2) 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This may take some time... done. 269s Running mktexlsr /var/lib/texmf ... done. 269s Building format(s) --all. 295s This may take some time... done. 296s autopkgtest [22:06:04]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 296s autopkgtest [22:06:04]: test pkg-r-autopkgtest: [----------------------- 297s Test: Try to load the R library SingleR 297s 297s R version 4.4.3 (2025-02-28) -- "Trophy Case" 297s Copyright (C) 2025 The R Foundation for Statistical Computing 297s Platform: x86_64-pc-linux-gnu 297s 297s R is free software and comes with ABSOLUTELY NO WARRANTY. 297s You are welcome to redistribute it under certain conditions. 297s Type 'license()' or 'licence()' for distribution details. 297s 297s R is a collaborative project with many contributors. 297s Type 'contributors()' for more information and 297s 'citation()' on how to cite R or R packages in publications. 297s 297s Type 'demo()' for some demos, 'help()' for on-line help, or 297s 'help.start()' for an HTML browser interface to help. 297s Type 'q()' to quit R. 297s 297s > library('SingleR') 297s Loading required package: SummarizedExperiment 297s Loading required package: MatrixGenerics 297s Loading required package: matrixStats 297s 297s Attaching package: ‘MatrixGenerics’ 297s 297s The following objects are masked from ‘package:matrixStats’: 297s 297s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 297s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 297s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 297s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 297s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 297s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 297s colWeightedMeans, colWeightedMedians, colWeightedSds, 297s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 297s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 297s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 297s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 297s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 297s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 297s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 297s rowWeightedSds, rowWeightedVars 297s 297s Loading required package: GenomicRanges 297s Loading required package: stats4 297s Loading required package: BiocGenerics 297s 297s Attaching package: ‘BiocGenerics’ 297s 297s The following objects are masked from ‘package:stats’: 297s 297s IQR, mad, sd, var, xtabs 297s 297s The following objects are masked from ‘package:base’: 297s 297s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 297s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 297s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 297s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 297s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 297s table, tapply, union, unique, unsplit, which.max, which.min 297s 297s Loading required package: S4Vectors 298s 298s Attaching package: ‘S4Vectors’ 298s 298s The following object is masked from ‘package:utils’: 298s 298s findMatches 298s 298s The following objects are masked from ‘package:base’: 298s 298s expand.grid, I, unname 298s 298s Loading required package: IRanges 299s Loading required package: GenomeInfoDb 299s Loading required package: Biobase 300s Welcome to Bioconductor 300s 300s Vignettes contain introductory material; view with 300s 'browseVignettes()'. To cite Bioconductor, see 300s 'citation("Biobase")', and for packages 'citation("pkgname")'. 300s 300s 300s Attaching package: ‘Biobase’ 300s 300s The following object is masked from ‘package:MatrixGenerics’: 300s 300s rowMedians 300s 300s The following objects are masked from ‘package:matrixStats’: 300s 300s anyMissing, rowMedians 300s 303s > 303s > 303s Other tests are currently unsupported! 303s They will be progressively added. 304s autopkgtest [22:06:12]: test pkg-r-autopkgtest: -----------------------] 304s pkg-r-autopkgtest PASS 304s autopkgtest [22:06:12]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 305s autopkgtest [22:06:13]: @@@@@@@@@@@@@@@@@@@@ summary 305s pkg-r-autopkgtest PASS 309s nova [W] Skipping flock for amd64 309s Creating nova instance adt-plucky-amd64-r-bioc-singler-20250315-220108-juju-7f2275-prod-proposed-migration-environment-20-87a4bf7d-fc53-4582-9ceb-83ae346ba258 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 309s nova [W] Timed out waiting for 9f9b1230-abfe-4c10-9e3c-1b4e6912a080 to get deleted.