0s autopkgtest [22:01:05]: starting date and time: 2025-03-15 22:01:05+0000 0s autopkgtest [22:01:05]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [22:01:05]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.h8nh47vv/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-shortread --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-17.secgroup --name adt-plucky-amd64-r-bioc-shortread-20250315-220105-juju-7f2275-prod-proposed-migration-environment-20-1ff4ee27-a330-4a8d-ab3d-4b048fa6e78b --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 49s autopkgtest [22:01:54]: testbed dpkg architecture: amd64 49s autopkgtest [22:01:54]: testbed apt version: 2.9.31ubuntu1 49s autopkgtest [22:01:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup 50s autopkgtest [22:01:55]: testbed release detected to be: None 50s autopkgtest [22:01:55]: updating testbed package index (apt update) 51s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 51s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 51s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 51s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 51s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 51s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 51s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 51s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 51s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 51s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 51s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 51s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 51s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 51s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 51s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 51s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 51s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 52s Fetched 1265 kB in 1s (1468 kB/s) 53s Reading package lists... 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 54s Calculating upgrade... 54s Calculating upgrade... 54s The following package was automatically installed and is no longer required: 54s libnl-genl-3-200 54s Use 'sudo apt autoremove' to remove it. 54s The following NEW packages will be installed: 54s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 54s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 54s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 54s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 54s The following packages will be upgraded: 54s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 54s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 54s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 54s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 54s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 54s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 54s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 54s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 54s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 54s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 54s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 54s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 54s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 54s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 54s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 54s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 54s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 54s parted pci.ids pciutils pinentry-curses python-apt-common python3 54s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 54s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 54s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 54s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 54s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 54s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 54s xz-utils 54s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 54s Need to get 829 MB of archives. 54s After this operation, 325 MB of additional disk space will be used. 54s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 55s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 55s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 55s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 55s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 55s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 55s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 55s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 55s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 55s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 55s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 55s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 55s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 55s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 55s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 55s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 55s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 55s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 55s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 55s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 55s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 55s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 56s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 56s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 56s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 56s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 56s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 56s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 56s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 56s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 56s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 56s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 56s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 56s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 56s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 56s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 56s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 56s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 56s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 56s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 56s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 56s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 56s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 56s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 56s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 56s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 56s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 56s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 56s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 56s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 56s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 56s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 56s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 56s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 56s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 56s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 56s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 56s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 56s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 56s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 56s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 56s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 56s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 56s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 56s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 56s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 56s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 56s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 56s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 56s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 56s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 56s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 56s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 56s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 56s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 56s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 56s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 56s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 56s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 57s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 57s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 57s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 57s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 57s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 57s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 57s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 57s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 57s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 57s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 57s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 57s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 57s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 57s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 57s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 57s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 57s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 57s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 57s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 57s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 57s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 57s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 57s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 58s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 58s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 58s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 58s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 58s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 58s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 58s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 84s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 84s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 84s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 84s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 84s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 84s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 84s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 84s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 86s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 87s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 93s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 93s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 93s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 93s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 93s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 93s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 93s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 93s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 93s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 93s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 94s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 94s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 94s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 94s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 94s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 94s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 94s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 94s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 94s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 94s Preconfiguring packages ... 94s Fetched 829 MB in 39s (21.0 MB/s) 94s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109140 files and directories currently installed.) 94s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu1_amd64.deb ... 94s Unpacking libc-dev-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 95s Preparing to unpack .../libc6-dev_2.41-1ubuntu1_amd64.deb ... 95s Unpacking libc6-dev:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 95s Preparing to unpack .../locales_2.41-1ubuntu1_all.deb ... 95s Unpacking locales (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 95s Preparing to unpack .../libc6_2.41-1ubuntu1_amd64.deb ... 95s Checking for services that may need to be restarted... 95s Checking init scripts... 95s Checking for services that may need to be restarted... 95s Checking init scripts... 95s Stopping some services possibly affected by the upgrade (will be restarted later): 95s cron: stopping...done. 95s 95s Unpacking libc6:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 96s Setting up libc6:amd64 (2.41-1ubuntu1) ... 96s Checking for services that may need to be restarted... 96s Checking init scripts... 96s Restarting services possibly affected by the upgrade: 96s cron: restarting...done. 96s 96s Services restarted successfully. 96s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 98s Preparing to unpack .../systemd_257.3-1ubuntu3_amd64.deb ... 98s Unpacking systemd (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 98s Preparing to unpack .../systemd-timesyncd_257.3-1ubuntu3_amd64.deb ... 98s Unpacking systemd-timesyncd (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 99s Preparing to unpack .../systemd-cryptsetup_257.3-1ubuntu3_amd64.deb ... 99s Unpacking systemd-cryptsetup (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 99s Preparing to unpack .../udev_257.3-1ubuntu3_amd64.deb ... 99s Unpacking udev (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 99s Preparing to unpack .../libudev1_257.3-1ubuntu3_amd64.deb ... 99s Unpacking libudev1:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 99s Setting up libudev1:amd64 (257.3-1ubuntu3) ... 99s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 99s Preparing to unpack .../libaudit1_1%3a4.0.2-2ubuntu2_amd64.deb ... 99s Unpacking libaudit1:amd64 (1:4.0.2-2ubuntu2) over (1:4.0.2-2ubuntu1) ... 99s Setting up libaudit1:amd64 (1:4.0.2-2ubuntu2) ... 99s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 99s Preparing to unpack .../libapparmor1_4.1.0~beta5-0ubuntu8_amd64.deb ... 99s Unpacking libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) over (4.1.0~beta5-0ubuntu5) ... 99s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 99s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 100s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 100s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 100s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 100s Setting up apt (2.9.33) ... 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 100s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 100s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 100s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 100s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 100s Setting up python3-minimal (3.13.2-2) ... 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 101s Preparing to unpack .../0-python3_3.13.2-2_amd64.deb ... 101s Unpacking python3 (3.13.2-2) over (3.13.2-1) ... 101s Preparing to unpack .../1-libpython3.13_3.13.2-2_amd64.deb ... 101s Unpacking libpython3.13:amd64 (3.13.2-2) over (3.13.2-1) ... 101s Preparing to unpack .../2-media-types_13.0.0_all.deb ... 101s Unpacking media-types (13.0.0) over (12.0.0) ... 101s Preparing to unpack .../3-libncurses6_6.5+20250216-2_amd64.deb ... 101s Unpacking libncurses6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 101s Preparing to unpack .../4-libncursesw6_6.5+20250216-2_amd64.deb ... 101s Unpacking libncursesw6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 101s Preparing to unpack .../5-libtinfo6_6.5+20250216-2_amd64.deb ... 101s Unpacking libtinfo6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 101s Setting up libtinfo6:amd64 (6.5+20250216-2) ... 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 101s Preparing to unpack .../0-libsqlite3-0_3.46.1-2_amd64.deb ... 101s Unpacking libsqlite3-0:amd64 (3.46.1-2) over (3.46.1-1) ... 101s Preparing to unpack .../1-python3.13_3.13.2-2_amd64.deb ... 101s Unpacking python3.13 (3.13.2-2) over (3.13.2-1) ... 101s Preparing to unpack .../2-python3.13-minimal_3.13.2-2_amd64.deb ... 101s Unpacking python3.13-minimal (3.13.2-2) over (3.13.2-1) ... 101s Preparing to unpack .../3-libpython3.13-minimal_3.13.2-2_amd64.deb ... 101s Unpacking libpython3.13-minimal:amd64 (3.13.2-2) over (3.13.2-1) ... 101s Preparing to unpack .../4-libpython3.13-stdlib_3.13.2-2_amd64.deb ... 101s Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 102s Preparing to unpack .../5-libpython3-stdlib_3.13.2-2_amd64.deb ... 102s Unpacking libpython3-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 102s Preparing to unpack .../6-rsync_3.4.1+ds1-3_amd64.deb ... 102s Unpacking rsync (3.4.1+ds1-3) over (3.4.1-0syncable1) ... 102s Selecting previously unselected package libdebuginfod-common. 102s Preparing to unpack .../7-libdebuginfod-common_0.192-4_all.deb ... 102s Unpacking libdebuginfod-common (0.192-4) ... 102s Preparing to unpack .../8-libsemanage-common_3.7-2.1build1_all.deb ... 102s Unpacking libsemanage-common (3.7-2.1build1) over (3.7-2.1) ... 102s Setting up libsemanage-common (3.7-2.1build1) ... 102s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109155 files and directories currently installed.) 102s Preparing to unpack .../00-gir1.2-girepository-2.0_1.83.4-1_amd64.deb ... 102s Unpacking gir1.2-girepository-2.0:amd64 (1.83.4-1) over (1.82.0-4) ... 102s Preparing to unpack .../01-gir1.2-glib-2.0_2.84.0-1_amd64.deb ... 102s Unpacking gir1.2-glib-2.0:amd64 (2.84.0-1) over (2.83.5-1) ... 102s Preparing to unpack .../02-libglib2.0-0t64_2.84.0-1_amd64.deb ... 102s Unpacking libglib2.0-0t64:amd64 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.../23-parted_3.6-5_amd64.deb ... 104s Unpacking parted (3.6-5) over (3.6-4build1) ... 104s Preparing to unpack .../24-libparted2t64_3.6-5_amd64.deb ... 104s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 104s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 104s Unpacking libparted2t64:amd64 (3.6-5) over (3.6-4build1) ... 104s Preparing to unpack .../25-pci.ids_0.0~2025.03.09-1_all.deb ... 104s Unpacking pci.ids (0.0~2025.03.09-1) over (0.0~2025.02.12-1) ... 105s Preparing to unpack .../26-pciutils_1%3a3.13.0-2_amd64.deb ... 105s Unpacking pciutils (1:3.13.0-2) over (1:3.13.0-1) ... 105s Preparing to unpack .../27-libpci3_1%3a3.13.0-2_amd64.deb ... 105s Unpacking libpci3:amd64 (1:3.13.0-2) over (1:3.13.0-1) ... 105s Preparing to unpack .../28-strace_6.13+ds-1ubuntu1_amd64.deb ... 105s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 105s Preparing to unpack .../29-xz-utils_5.6.4-1_amd64.deb ... 105s Unpacking xz-utils (5.6.4-1) over (5.6.3-1) ... 105s Preparing to unpack .../30-ubuntu-standard_1.549_amd64.deb ... 105s Unpacking ubuntu-standard (1.549) over (1.548) ... 105s Preparing to unpack .../31-libgprofng0_2.44-3ubuntu1_amd64.deb ... 105s Unpacking libgprofng0:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 105s Preparing to unpack .../32-libctf0_2.44-3ubuntu1_amd64.deb ... 105s Unpacking libctf0:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 105s Preparing to unpack .../33-libctf-nobfd0_2.44-3ubuntu1_amd64.deb ... 105s Unpacking libctf-nobfd0:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 105s Preparing to unpack .../34-binutils-x86-64-linux-gnu_2.44-3ubuntu1_amd64.deb ... 105s Unpacking binutils-x86-64-linux-gnu (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 105s Preparing to unpack .../35-libbinutils_2.44-3ubuntu1_amd64.deb ... 105s Unpacking libbinutils:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 105s Preparing to unpack .../36-binutils_2.44-3ubuntu1_amd64.deb ... 105s Unpacking binutils (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 105s Preparing to unpack .../37-binutils-common_2.44-3ubuntu1_amd64.deb ... 105s Unpacking binutils-common:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 105s Preparing to unpack .../38-libsframe1_2.44-3ubuntu1_amd64.deb ... 105s Unpacking libsframe1:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 105s Preparing to unpack .../39-hwdata_0.393-3_all.deb ... 105s Unpacking hwdata (0.393-3) over (0.392-1) ... 105s Selecting previously unselected package pnp.ids. 105s Preparing to unpack .../40-pnp.ids_0.393-3_all.deb ... 105s Unpacking pnp.ids (0.393-3) ... 105s Preparing to unpack .../41-linux-tools-common_6.14.0-10.10_all.deb ... 105s Unpacking linux-tools-common (6.14.0-10.10) over (6.12.0-16.16) ... 105s Selecting previously unselected package bpftool. 105s Preparing to unpack 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.../49-exfatprogs_1.2.8-1_amd64.deb ... 106s Unpacking exfatprogs (1.2.8-1) over (1.2.7-3) ... 106s Preparing to unpack .../50-libcurl3t64-gnutls_8.12.1-3ubuntu1_amd64.deb ... 106s Unpacking libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) over (8.12.1-2ubuntu1) ... 106s Preparing to unpack .../51-fwupd_2.0.6-4_amd64.deb ... 106s Unpacking fwupd (2.0.6-4) over (2.0.6-3) ... 106s Preparing to unpack .../52-libfwupd3_2.0.6-4_amd64.deb ... 106s Unpacking libfwupd3:amd64 (2.0.6-4) over (2.0.6-3) ... 107s Preparing to unpack .../53-libmm-glib0_1.23.4-0ubuntu3_amd64.deb ... 107s Unpacking libmm-glib0:amd64 (1.23.4-0ubuntu3) over (1.23.4-0ubuntu2) ... 107s Preparing to unpack .../54-htop_3.4.0-2_amd64.deb ... 107s Unpacking htop (3.4.0-2) over (3.3.0-5) ... 107s Preparing to unpack .../55-linux-firmware_20250310.git9e1370d3-0ubuntu1_amd64.deb ... 107s Unpacking linux-firmware (20250310.git9e1370d3-0ubuntu1) over (20250204.git0fd450ee-0ubuntu1) ... 110s Preparing to unpack .../56-initramfs-tools_0.146ubuntu1_all.deb ... 110s Unpacking initramfs-tools (0.146ubuntu1) over (0.145ubuntu3) ... 110s Preparing to unpack .../57-initramfs-tools-core_0.146ubuntu1_all.deb ... 110s Unpacking initramfs-tools-core (0.146ubuntu1) over (0.145ubuntu3) ... 110s Preparing to unpack .../58-initramfs-tools-bin_0.146ubuntu1_amd64.deb ... 110s Unpacking initramfs-tools-bin (0.146ubuntu1) over (0.145ubuntu3) ... 110s Selecting previously unselected package libdebuginfod1t64:amd64. 110s Preparing to unpack .../59-libdebuginfod1t64_0.192-4_amd64.deb ... 110s Unpacking libdebuginfod1t64:amd64 (0.192-4) ... 110s Preparing to unpack .../60-libftdi1-2_1.5-8build1_amd64.deb ... 110s Unpacking libftdi1-2:amd64 (1.5-8build1) over (1.5-8) ... 110s Preparing to unpack .../61-libgpgme11t64_1.24.2-1ubuntu2_amd64.deb ... 110s Unpacking libgpgme11t64:amd64 (1.24.2-1ubuntu2) over (1.24.2-1ubuntu1) ... 110s Preparing to unpack .../62-libjemalloc2_5.3.0-3_amd64.deb ... 110s Unpacking libjemalloc2:amd64 (5.3.0-3) over (5.3.0-2build1) ... 110s Selecting previously unselected package linux-modules-6.14.0-10-generic. 110s Preparing to unpack .../63-linux-modules-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 110s Unpacking linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 110s Selecting previously unselected package linux-image-6.14.0-10-generic. 110s Preparing to unpack .../64-linux-image-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 110s Unpacking linux-image-6.14.0-10-generic (6.14.0-10.10) ... 111s Selecting previously unselected package linux-modules-extra-6.14.0-10-generic. 111s Preparing to unpack .../65-linux-modules-extra-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 111s Unpacking linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 112s Preparing to unpack .../66-linux-generic_6.14.0-10.10_amd64.deb ... 112s Unpacking linux-generic (6.14.0-10.10) over (6.12.0-16.16+2) ... 112s Preparing to unpack .../67-linux-image-generic_6.14.0-10.10_amd64.deb ... 112s 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(1.0.6-6) over (1.0.6-5) ... 116s Preparing to unpack .../79-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ... 116s Unpacking python3-rpds-py (0.21.0-2ubuntu2) over (0.21.0-2ubuntu1) ... 116s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 116s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 117s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 117s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 117s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 117s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 117s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 117s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 117s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 117s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 117s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 117s Setting up media-types (13.0.0) ... 117s Installing new version of config file /etc/mime.types ... 117s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 117s Setting up ubuntu-kernel-accessories (1.549) ... 117s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 117s Setting up pci.ids (0.0~2025.03.09-1) ... 117s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 117s Setting up apt-utils (2.9.33) ... 117s Setting up libdebuginfod-common (0.192-4) ... 117s Setting up exfatprogs (1.2.8-1) ... 117s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 117s Setting up bpftool (7.6.0+6.14.0-10.10) ... 117s Setting up libestr0:amd64 (0.1.11-2) ... 117s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 117s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 117s Setting up dosfstools (4.2-1.2) ... 117s Setting up rsyslog (8.2412.0-2ubuntu2) ... 117s info: The user `syslog' is already a member of `adm'. 118s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 118s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 118s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 118s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 118s Setting up systemd (257.3-1ubuntu3) ... 118s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 118s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 118s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 119s Setting up libparted2t64:amd64 (3.6-5) ... 119s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 119s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 119s Setting up linux-headers-generic (6.14.0-10.10) ... 119s Setting up libjemalloc2:amd64 (5.3.0-3) ... 119s Setting up locales (2.41-1ubuntu1) ... 119s Installing new version of config file /etc/locale.alias ... 119s Generating locales (this might take a while)... 121s en_US.UTF-8... done 121s Generation complete. 121s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 121s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 121s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 121s Installing new version of config file /etc/apparmor.d/fusermount3 ... 121s Installing new version of config file /etc/apparmor.d/lsusb ... 121s Installing new version of config file /etc/apparmor.d/openvpn ... 122s Reloading AppArmor profiles 123s Setting up libftdi1-2:amd64 (1.5-8build1) ... 123s Setting up libglib2.0-data (2.84.0-1) ... 123s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 123s Setting up libncurses6:amd64 (6.5+20250216-2) ... 123s Setting up strace (6.13+ds-1ubuntu1) ... 123s Setting up xz-utils (5.6.4-1) ... 124s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 124s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 124s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 124s Setting up udev (257.3-1ubuntu3) ... 125s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 127s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 127s Setting up libpci3:amd64 (1:3.13.0-2) ... 127s Setting up whiptail (0.52.24-4ubuntu2) ... 127s Setting up python-apt-common (2.9.9build1) ... 127s Setting up pnp.ids (0.393-3) ... 127s Setting up libnl-3-200:amd64 (3.7.0-1) ... 127s Setting up python3.13-minimal (3.13.2-2) ... 127s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 127s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 127s Setting up libc-dev-bin (2.41-1ubuntu1) ... 127s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 127s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 127s Setting up rsync (3.4.1+ds1-3) ... 128s rsync.service is a disabled or a static unit not running, not starting it. 128s Setting up python3.13-gdbm (3.13.2-2) ... 128s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 128s Setting up systemd-resolved (257.3-1ubuntu3) ... 129s Setting up initramfs-tools-bin (0.146ubuntu1) ... 129s Setting up ncurses-term (6.5+20250216-2) ... 129s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 129s Setting up libpython3.13:amd64 (3.13.2-2) ... 129s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 129s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 129s Setting up systemd-sysv (257.3-1ubuntu3) ... 129s Setting up linux-headers-virtual (6.14.0-10.10) ... 129s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 129s Setting up python3.13 (3.13.2-2) ... 129s Setting up htop (3.4.0-2) ... 129s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 131s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 131s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 131s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 131s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 131s Setting up parted (3.6-5) ... 131s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 131s Setting up python3 (3.13.2-2) ... 132s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 132s Setting up python3-markupsafe (2.1.5-1build4) ... 132s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 134s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 134s Setting up hwdata (0.393-3) ... 134s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 134s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 134s No schema files found: doing nothing. 134s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 134s Setting up linux-perf (6.14.0-10.10) ... 134s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 134s Setting up pciutils (1:3.13.0-2) ... 134s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 134s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 134s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 134s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 134s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 134s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 134s Setting up curl (8.12.1-3ubuntu1) ... 134s Setting up linux-image-virtual (6.14.0-10.10) ... 134s Setting up initramfs-tools-core (0.146ubuntu1) ... 134s Setting up linux-tools-common (6.14.0-10.10) ... 134s Setting up python3-systemd (235-1build6) ... 134s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 134s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 134s Setting up linux-image-generic (6.14.0-10.10) ... 134s Setting up python3-dbus (1.3.2-5build5) ... 135s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 135s Setting up initramfs-tools (0.146ubuntu1) ... 135s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 135s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 135s update-initramfs: deferring update (trigger activated) 135s Setting up linux-generic (6.14.0-10.10) ... 135s Setting up ubuntu-minimal (1.549) ... 135s Setting up python3-apt (2.9.9build1) ... 135s Setting up python3-bcrypt (4.2.0-2.1build1) ... 135s Setting up python3-yaml (6.0.2-1build2) ... 135s Setting up libfwupd3:amd64 (2.0.6-4) ... 135s Setting up python3-lazr.uri (1.0.6-6) ... 135s Setting up binutils (2.44-3ubuntu1) ... 135s Setting up ubuntu-standard (1.549) ... 135s Setting up cloud-init-base (25.1-0ubuntu3) ... 137s Setting up linux-virtual (6.14.0-10.10) ... 137s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 137s Setting up python3-gi (3.50.0-4build1) ... 137s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 137s Setting up fwupd (2.0.6-4) ... 137s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 137s fwupd.service is a disabled or a static unit not running, not starting it. 137s Setting up cloud-init (25.1-0ubuntu3) ... 137s Processing triggers for man-db (2.13.0-1) ... 139s Processing triggers for dbus (1.16.2-1ubuntu1) ... 139s Processing triggers for shared-mime-info (2.4-5) ... 139s Warning: program compiled against libxml 212 using older 209 139s Processing triggers for libc-bin (2.41-1ubuntu1) ... 139s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 140s /etc/kernel/postinst.d/initramfs-tools: 140s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 140s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 150s /etc/kernel/postinst.d/zz-update-grub: 150s Sourcing file `/etc/default/grub' 150s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 150s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 150s Generating grub configuration file ... 150s Found linux image: /boot/vmlinuz-6.14.0-10-generic 150s Found initrd image: /boot/initrd.img-6.14.0-10-generic 150s Found linux image: /boot/vmlinuz-6.12.0-16-generic 150s Found initrd image: /boot/initrd.img-6.12.0-16-generic 150s Found linux image: /boot/vmlinuz-6.11.0-8-generic 150s Found initrd image: /boot/initrd.img-6.11.0-8-generic 150s Warning: os-prober will not be executed to detect other bootable partitions. 150s Systems on them will not be added to the GRUB boot configuration. 150s Check GRUB_DISABLE_OS_PROBER documentation entry. 150s Adding boot menu entry for UEFI Firmware Settings ... 150s done 150s Processing triggers for initramfs-tools (0.146ubuntu1) ... 150s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 150s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 162s Reading package lists... 163s Building dependency tree... 164s Reading state information... 164s Solving dependencies... 164s The following packages will be REMOVED: 164s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 164s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 164s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 164s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 164s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 164s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 164s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 164s linux-tools-6.12.0-16-generic* 164s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 164s After this operation, 545 MB disk space will be freed. 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 164s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 164s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 164s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 164s Removing libpython3.12t64:amd64 (3.12.9-1) ... 164s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 164s Removing libnsl2:amd64 (1.3.0-3build3) ... 164s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 164s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 164s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 165s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 166s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 168s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 168s /etc/kernel/postrm.d/initramfs-tools: 168s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 168s /etc/kernel/postrm.d/zz-update-grub: 168s Sourcing file `/etc/default/grub' 168s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 168s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 168s Generating grub configuration file ... 168s Found linux image: /boot/vmlinuz-6.14.0-10-generic 168s Found initrd image: /boot/initrd.img-6.14.0-10-generic 169s Found linux image: /boot/vmlinuz-6.12.0-16-generic 169s Found initrd image: /boot/initrd.img-6.12.0-16-generic 169s Warning: os-prober will not be executed to detect other bootable partitions. 169s Systems on them will not be added to the GRUB boot configuration. 169s Check GRUB_DISABLE_OS_PROBER documentation entry. 169s Adding boot menu entry for UEFI Firmware Settings ... 169s done 169s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 169s W: Removing the running kernel 169s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 169s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 169s /etc/kernel/postrm.d/initramfs-tools: 169s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 169s /etc/kernel/postrm.d/zz-update-grub: 169s Sourcing file `/etc/default/grub' 169s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 169s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 169s Generating grub configuration file ... 169s Found linux image: /boot/vmlinuz-6.14.0-10-generic 169s Found initrd image: /boot/initrd.img-6.14.0-10-generic 170s Warning: os-prober will not be executed to detect other bootable partitions. 170s Systems on them will not be added to the GRUB boot configuration. 170s Check GRUB_DISABLE_OS_PROBER documentation entry. 170s Adding boot menu entry for UEFI Firmware Settings ... 170s done 170s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 170s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 171s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 171s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 171s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 171s Processing triggers for libc-bin (2.41-1ubuntu1) ... 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 171s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 172s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 172s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 172s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 172s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 172s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 172s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 172s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 172s autopkgtest [22:03:57]: upgrading testbed (apt dist-upgrade and autopurge) 172s Reading package lists... 172s Building dependency tree... 172s Reading state information... 173s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 173s Starting 2 pkgProblemResolver with broken count: 0 173s Done 173s Entering ResolveByKeep 173s 174s Calculating upgrade... 174s The following packages will be upgraded: 174s libc-bin libc-dev-bin libc6 libc6-dev locales 174s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 174s Need to get 10.5 MB of archives. 174s After this operation, 1024 B of additional disk space will be used. 174s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 174s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 174s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 175s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 175s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 175s Preconfiguring packages ... 176s Fetched 10.5 MB in 1s (7205 kB/s) 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 176s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 176s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 176s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 176s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 176s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 176s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 176s Setting up libc6:amd64 (2.41-1ubuntu2) ... 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 176s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 176s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 176s Setting up libc-bin (2.41-1ubuntu2) ... 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 176s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 176s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 177s Setting up locales (2.41-1ubuntu2) ... 177s Generating locales (this might take a while)... 179s en_US.UTF-8... done 179s Generation complete. 179s Setting up libc-dev-bin (2.41-1ubuntu2) ... 179s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 179s Processing triggers for man-db (2.13.0-1) ... 179s Processing triggers for systemd (257.3-1ubuntu3) ... 180s Reading package lists... 181s Building dependency tree... 181s Reading state information... 181s Starting pkgProblemResolver with broken count: 0 181s Starting 2 pkgProblemResolver with broken count: 0 181s Done 181s Solving dependencies... 181s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 182s autopkgtest [22:04:07]: rebooting testbed after setup commands that affected boot 205s autopkgtest [22:04:30]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 207s autopkgtest [22:04:32]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-shortread 210s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-shortread 1.64.0-3 (dsc) [2409 B] 210s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-shortread 1.64.0-3 (tar) [5321 kB] 210s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-shortread 1.64.0-3 (diff) [6160 B] 210s gpgv: Signature made Mon Jan 27 12:34:30 2025 UTC 210s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 210s gpgv: issuer "crusoe@debian.org" 210s gpgv: Can't check signature: No public key 210s dpkg-source: warning: cannot verify inline signature for ./r-bioc-shortread_1.64.0-3.dsc: no acceptable signature found 210s autopkgtest [22:04:35]: testing package r-bioc-shortread version 1.64.0-3 210s autopkgtest [22:04:35]: build not needed 212s autopkgtest [22:04:37]: test pkg-r-autopkgtest: preparing testbed 212s Reading package lists... 213s Building dependency tree... 213s Reading state information... 213s Starting pkgProblemResolver with broken count: 0 213s Starting 2 pkgProblemResolver with broken count: 0 213s Done 214s The following NEW packages will be installed: 214s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 214s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 214s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 214s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 214s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 214s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 214s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 214s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 214s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 214s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 214s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 214s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 214s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 214s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 214s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 214s libjs-popper.js libjs-prettify libjs-sifter.js 214s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 214s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 214s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 214s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 214s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 214s libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev 214s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 214s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 214s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 214s libxss1 libxt6t64 libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv 214s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 214s r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase 214s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 214s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 214s r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata 214s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 214s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-pwalign 214s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 214s r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 214s r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 214s r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager 214s r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown 214s r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark 214s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr 214s r-cran-deldir r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi 214s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 214s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 214s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 214s r-cran-httr2 r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib 214s r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice 214s r-cran-latticeextra r-cran-lifecycle r-cran-littler r-cran-magrittr 214s r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 214s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 214s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 214s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen 214s r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 214s r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny r-cran-snow 214s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble 214s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs 214s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 214s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 214s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 214s 0 upgraded, 282 newly installed, 0 to remove and 0 not upgraded. 214s Need to get 442 MB of archives. 214s After this operation, 1371 MB of additional disk space will be used. 214s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 214s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 214s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 216s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 216s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 216s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 216s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 216s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 216s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 216s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 216s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 216s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 216s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 216s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 216s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 216s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 216s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 217s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 217s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 217s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 217s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 217s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 218s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 218s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 218s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 218s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 218s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 218s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 218s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 218s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 218s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 218s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 218s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 218s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 218s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 218s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 218s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 218s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 218s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 219s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 219s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 219s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 219s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 219s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 219s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 219s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 219s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 219s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 219s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 219s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB] 219s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 219s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 219s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 219s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 219s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 219s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 219s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 219s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 219s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 219s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 219s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 219s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 219s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 219s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 219s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 220s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 220s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 220s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 220s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 220s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 220s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 220s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 220s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 220s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 220s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 220s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 220s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 220s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 220s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 220s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 220s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 220s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 220s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 220s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 220s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 220s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB] 220s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 220s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 220s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 220s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 220s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 220s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 220s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 220s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 220s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 220s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 220s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 220s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 221s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 221s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 221s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 221s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 221s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 221s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 221s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 221s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 221s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 221s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB] 221s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 221s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 221s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 221s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB] 221s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 221s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 221s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB] 221s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 221s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 221s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 221s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 221s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 221s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 221s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 221s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 221s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 221s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 221s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 221s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 221s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 221s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 221s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 222s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 223s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 223s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 223s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 223s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 223s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 223s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 223s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 224s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 224s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 224s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 224s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 224s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 224s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 224s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 224s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 224s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 224s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 224s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 224s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 224s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB] 224s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 224s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 224s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 224s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 224s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 224s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 224s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 224s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 224s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 224s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 224s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 224s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 224s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 224s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 224s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 224s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 224s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 224s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 224s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 224s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 224s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 224s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 224s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 224s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 224s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 224s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 225s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 225s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 225s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 226s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 226s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 226s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 226s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 226s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 226s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 226s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 226s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 226s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 226s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 226s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 226s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 226s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 226s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 226s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 226s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbplyr all 2.5.0+dfsg-1 [1233 kB] 226s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 226s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 226s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 226s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 226s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 226s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 226s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 226s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 227s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 227s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 227s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 227s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 227s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 227s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 227s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 227s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 227s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 227s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 227s Get:215 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 227s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 227s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 227s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 227s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 227s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 227s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 227s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 227s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 227s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 227s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 227s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 228s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 228s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 228s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 228s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 228s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 228s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 228s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 228s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 228s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 228s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 228s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 228s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB] 228s Get:239 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 228s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB] 228s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB] 229s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB] 229s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 231s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 231s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 231s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 231s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 231s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 231s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr2 all 1.1.1-1 [752 kB] 231s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml2 amd64 1.3.7-1 [334 kB] 231s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biomart all 2.62.1+dfsg-1 [444 kB] 231s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 231s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 231s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 231s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 231s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 231s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 231s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1392 kB] 231s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 231s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 231s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 231s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB] 231s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 232s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 232s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 232s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 232s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 232s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 232s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 232s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB] 232s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 232s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-pwalign amd64 1.2.0-2 [757 kB] 232s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 232s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB] 232s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 232s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 232s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 232s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 232s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 232s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 232s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-shortread amd64 1.64.0-3 [5247 kB] 233s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 233s Preconfiguring packages ... 233s Fetched 442 MB in 19s (23.1 MB/s) 233s Selecting previously unselected package libisl23:amd64. 234s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 234s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 234s Unpacking libisl23:amd64 (0.27-1) ... 234s Selecting previously unselected package libmpc3:amd64. 234s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 234s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 234s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 234s Preparing to unpack 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.../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 234s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 234s Selecting previously unselected package libhwasan0:amd64. 234s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 234s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 234s Selecting previously unselected package libquadmath0:amd64. 234s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 234s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 234s Selecting previously unselected package libgcc-14-dev:amd64. 234s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 234s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 234s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 234s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 234s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 235s Selecting previously unselected package gcc-14. 235s 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(2.37-8) ... 235s Selecting previously unselected package fonts-dejavu-core. 235s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 236s Unpacking fonts-dejavu-core (2.37-8) ... 236s Selecting previously unselected package fontconfig-config. 236s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 236s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 236s Selecting previously unselected package libfontconfig1:amd64. 236s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 236s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 236s Selecting previously unselected package fontconfig. 236s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 236s Unpacking fontconfig (2.15.0-2ubuntu1) ... 236s Selecting previously unselected package fonts-font-awesome. 236s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 236s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 236s Selecting previously unselected package fonts-glyphicons-halflings. 236s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 236s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 236s Selecting previously unselected package fonts-lmodern. 236s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ... 236s Unpacking fonts-lmodern (2.005-1) ... 236s Selecting previously unselected package fonts-mathjax. 236s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 236s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 236s Selecting previously unselected package libgfortran5:amd64. 236s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 236s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 236s Selecting previously unselected package libgfortran-14-dev:amd64. 236s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 236s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 236s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 236s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 236s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 236s Selecting previously unselected package gfortran-14. 236s Preparing to unpack .../039-gfortran-14_14.2.0-17ubuntu3_amd64.deb ... 236s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 236s Selecting previously unselected package gfortran-x86-64-linux-gnu. 236s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 236s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 236s Selecting previously unselected package gfortran. 236s Preparing to unpack .../041-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 236s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 237s Selecting previously unselected package icu-devtools. 237s Preparing to unpack .../042-icu-devtools_76.1-1ubuntu2_amd64.deb ... 237s Unpacking icu-devtools (76.1-1ubuntu2) ... 237s Selecting previously unselected package javascript-common. 237s Preparing to unpack .../043-javascript-common_12_all.deb ... 237s Unpacking javascript-common (12) ... 237s Selecting previously unselected package libio-string-perl. 237s Preparing to unpack .../044-libio-string-perl_1.08-4_all.deb ... 237s Unpacking libio-string-perl (1.08-4) ... 237s Selecting previously unselected package liblatex-tounicode-perl. 237s Preparing to unpack .../045-liblatex-tounicode-perl_0.55-1_all.deb ... 237s Unpacking liblatex-tounicode-perl (0.55-1) ... 237s Selecting previously unselected package libbibtex-parser-perl. 237s Preparing to unpack .../046-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 237s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 237s Selecting previously unselected package libblas3:amd64. 237s Preparing to unpack .../047-libblas3_3.12.1-2_amd64.deb ... 237s Unpacking libblas3:amd64 (3.12.1-2) ... 237s Selecting previously unselected package libblas-dev:amd64. 237s Preparing to unpack .../048-libblas-dev_3.12.1-2_amd64.deb ... 237s Unpacking libblas-dev:amd64 (3.12.1-2) ... 237s Selecting previously unselected package libboost1.83-dev:amd64. 237s Preparing to unpack .../049-libboost1.83-dev_1.83.0-4.1ubuntu2_amd64.deb ... 237s Unpacking libboost1.83-dev:amd64 (1.83.0-4.1ubuntu2) ... 239s Selecting previously unselected package libboost-dev:amd64. 239s Preparing to unpack .../050-libboost-dev_1.83.0.2ubuntu1_amd64.deb ... 239s Unpacking libboost-dev:amd64 (1.83.0.2ubuntu1) ... 239s Selecting previously unselected package libbz2-dev:amd64. 239s Preparing to unpack .../051-libbz2-dev_1.0.8-6_amd64.deb ... 239s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 239s Selecting previously unselected package libpixman-1-0:amd64. 239s Preparing to unpack .../052-libpixman-1-0_0.44.0-3_amd64.deb ... 239s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 239s Selecting previously unselected package libxcb-render0:amd64. 239s Preparing to unpack .../053-libxcb-render0_1.17.0-2_amd64.deb ... 239s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 239s Selecting previously unselected package libxcb-shm0:amd64. 239s Preparing to unpack .../054-libxcb-shm0_1.17.0-2_amd64.deb ... 239s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 239s Selecting previously unselected package libxrender1:amd64. 239s Preparing to unpack .../055-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 239s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 239s Selecting previously unselected package libcairo2:amd64. 239s Preparing to unpack .../056-libcairo2_1.18.2-2_amd64.deb ... 239s Unpacking libcairo2:amd64 (1.18.2-2) ... 239s Selecting previously unselected package libdatrie1:amd64. 239s Preparing to unpack .../057-libdatrie1_0.2.13-3build1_amd64.deb ... 239s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 239s Selecting previously unselected package libdeflate0:amd64. 239s Preparing to unpack .../058-libdeflate0_1.23-1_amd64.deb ... 239s Unpacking libdeflate0:amd64 (1.23-1) ... 239s Selecting previously unselected package libdeflate-dev:amd64. 239s Preparing to unpack .../059-libdeflate-dev_1.23-1_amd64.deb ... 239s Unpacking libdeflate-dev:amd64 (1.23-1) ... 239s Selecting previously unselected package libgraphite2-3:amd64. 239s Preparing to unpack .../060-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 239s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 239s Selecting previously unselected package libharfbuzz0b:amd64. 239s Preparing to unpack .../061-libharfbuzz0b_10.2.0-1_amd64.deb ... 239s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 239s Selecting previously unselected package x11-common. 239s Preparing to unpack .../062-x11-common_1%3a7.7+23ubuntu3_all.deb ... 239s Unpacking x11-common (1:7.7+23ubuntu3) ... 239s Selecting previously unselected package libice6:amd64. 239s Preparing to unpack .../063-libice6_2%3a1.1.1-1_amd64.deb ... 239s Unpacking libice6:amd64 (2:1.1.1-1) ... 239s Selecting previously unselected package libicu-dev:amd64. 239s Preparing to unpack .../064-libicu-dev_76.1-1ubuntu2_amd64.deb ... 239s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 240s Selecting previously unselected package libjpeg-turbo8:amd64. 240s Preparing to unpack .../065-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 240s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 240s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 240s Preparing to unpack .../066-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ... 240s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 240s Selecting previously unselected package libjpeg8:amd64. 240s Preparing to unpack .../067-libjpeg8_8c-2ubuntu11_amd64.deb ... 240s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 240s Selecting previously unselected package libjpeg8-dev:amd64. 240s Preparing to unpack .../068-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 240s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 240s Selecting previously unselected package libjpeg-dev:amd64. 240s Preparing to unpack .../069-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 240s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 240s Selecting previously unselected package libjs-bootstrap. 240s Preparing to unpack .../070-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 240s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 240s Selecting previously unselected package libjs-popper.js. 240s Preparing to unpack .../071-libjs-popper.js_1.16.1+ds-6_all.deb ... 240s Unpacking libjs-popper.js (1.16.1+ds-6) ... 240s Selecting previously unselected package libjs-bootstrap4. 240s Preparing to unpack .../072-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 240s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 240s Selecting previously unselected package libjs-d3. 240s Preparing to unpack .../073-libjs-d3_3.5.17-4_all.deb ... 240s Unpacking libjs-d3 (3.5.17-4) ... 240s Selecting previously unselected package libjs-es5-shim. 240s Preparing to unpack .../074-libjs-es5-shim_4.6.7-2_all.deb ... 240s Unpacking libjs-es5-shim (4.6.7-2) ... 240s Selecting previously unselected package libjs-highlight.js. 240s Preparing to unpack .../075-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 240s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 240s Selecting previously unselected package libjs-jquery. 240s Preparing to unpack .../076-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 240s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 240s Selecting previously unselected package libjs-jquery-datatables. 240s Preparing to unpack .../077-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 240s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 240s Selecting previously unselected package libjs-sifter.js. 240s Preparing to unpack .../078-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 240s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 240s Selecting previously unselected package libjs-microplugin.js. 240s Preparing to unpack .../079-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 240s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 240s Selecting previously unselected package libjs-jquery-selectize.js. 240s Preparing to unpack .../080-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 240s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 240s Selecting previously unselected package libjs-jquery-ui. 240s Preparing to unpack .../081-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 240s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 240s Selecting previously unselected package libjs-json. 240s Preparing to unpack .../082-libjs-json_0~20221030+~1.0.8-1_all.deb ... 240s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 240s Selecting previously unselected package libjs-lunr. 240s Preparing to unpack .../083-libjs-lunr_2.3.9~dfsg-2_all.deb ... 240s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 240s Selecting previously unselected package libjs-prettify. 240s Preparing to unpack .../084-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 240s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 240s Selecting previously unselected package libkpathsea6:amd64. 240s Preparing to unpack .../085-libkpathsea6_2024.20240313.70630+ds-6_amd64.deb ... 240s Unpacking libkpathsea6:amd64 (2024.20240313.70630+ds-6) ... 240s Selecting previously unselected package liblapack3:amd64. 240s Preparing to unpack .../086-liblapack3_3.12.1-2_amd64.deb ... 240s Unpacking liblapack3:amd64 (3.12.1-2) ... 240s Selecting previously unselected package liblapack-dev:amd64. 240s Preparing to unpack .../087-liblapack-dev_3.12.1-2_amd64.deb ... 240s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 241s Selecting previously unselected package liblerc4:amd64. 241s Preparing to unpack .../088-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 241s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 241s Selecting previously unselected package liblua5.4-0:amd64. 241s Preparing to unpack .../089-liblua5.4-0_5.4.7-1_amd64.deb ... 241s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 241s Selecting previously unselected package libmpfi0:amd64. 241s Preparing to unpack .../090-libmpfi0_1.5.4+ds-4_amd64.deb ... 241s Unpacking libmpfi0:amd64 (1.5.4+ds-4) ... 241s Selecting previously unselected package libncurses-dev:amd64. 241s Preparing to unpack .../091-libncurses-dev_6.5+20250216-2_amd64.deb ... 241s Unpacking libncurses-dev:amd64 (6.5+20250216-2) ... 241s Selecting previously unselected package libthai-data. 241s Preparing to unpack .../092-libthai-data_0.1.29-2build1_all.deb ... 241s Unpacking libthai-data (0.1.29-2build1) ... 241s Selecting previously unselected package libthai0:amd64. 241s Preparing to unpack .../093-libthai0_0.1.29-2build1_amd64.deb ... 241s Unpacking libthai0:amd64 (0.1.29-2build1) ... 241s Selecting previously unselected package libpango-1.0-0:amd64. 241s Preparing to unpack .../094-libpango-1.0-0_1.56.2-1_amd64.deb ... 241s Unpacking libpango-1.0-0:amd64 (1.56.2-1) ... 241s Selecting previously unselected package libpangoft2-1.0-0:amd64. 241s Preparing to unpack .../095-libpangoft2-1.0-0_1.56.2-1_amd64.deb ... 241s Unpacking libpangoft2-1.0-0:amd64 (1.56.2-1) ... 241s Selecting previously unselected package libpangocairo-1.0-0:amd64. 241s Preparing to unpack .../096-libpangocairo-1.0-0_1.56.2-1_amd64.deb ... 241s Unpacking libpangocairo-1.0-0:amd64 (1.56.2-1) ... 241s Selecting previously unselected package libpaper2:amd64. 241s Preparing to unpack .../097-libpaper2_2.2.5-0.3_amd64.deb ... 241s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 241s Selecting previously unselected package libpaper-utils. 241s Preparing to unpack .../098-libpaper-utils_2.2.5-0.3_amd64.deb ... 241s Unpacking libpaper-utils (2.2.5-0.3) ... 241s Selecting previously unselected package libpcre2-16-0:amd64. 241s Preparing to unpack .../099-libpcre2-16-0_10.45-1_amd64.deb ... 241s Unpacking libpcre2-16-0:amd64 (10.45-1) ... 241s Selecting previously unselected package libpcre2-32-0:amd64. 241s Preparing to unpack .../100-libpcre2-32-0_10.45-1_amd64.deb ... 241s Unpacking libpcre2-32-0:amd64 (10.45-1) ... 241s Selecting previously unselected package libpcre2-posix3:amd64. 241s Preparing to unpack .../101-libpcre2-posix3_10.45-1_amd64.deb ... 241s Unpacking libpcre2-posix3:amd64 (10.45-1) ... 241s Selecting previously unselected package libpcre2-dev:amd64. 241s Preparing to unpack .../102-libpcre2-dev_10.45-1_amd64.deb ... 241s Unpacking libpcre2-dev:amd64 (10.45-1) ... 241s Selecting previously unselected package libpkgconf3:amd64. 241s Preparing to unpack .../103-libpkgconf3_1.8.1-4_amd64.deb ... 241s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 241s Selecting previously unselected package zlib1g-dev:amd64. 241s Preparing to unpack .../104-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 241s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 241s Selecting previously unselected package libpng-dev:amd64. 241s Preparing to unpack .../105-libpng-dev_1.6.47-1_amd64.deb ... 241s Unpacking libpng-dev:amd64 (1.6.47-1) ... 241s Selecting previously unselected package libpotrace0:amd64. 241s Preparing to unpack .../106-libpotrace0_1.16-2build1_amd64.deb ... 241s Unpacking libpotrace0:amd64 (1.16-2build1) ... 241s Selecting previously unselected package libptexenc1:amd64. 241s Preparing to unpack .../107-libptexenc1_2024.20240313.70630+ds-6_amd64.deb ... 241s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-6) ... 241s Selecting previously unselected package libreadline-dev:amd64. 241s Preparing to unpack .../108-libreadline-dev_8.2-6_amd64.deb ... 241s Unpacking libreadline-dev:amd64 (8.2-6) ... 241s Selecting previously unselected package libsharpyuv0:amd64. 241s Preparing to unpack .../109-libsharpyuv0_1.5.0-0.1_amd64.deb ... 241s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 241s Selecting previously unselected package libsm6:amd64. 241s Preparing to unpack .../110-libsm6_2%3a1.2.4-1_amd64.deb ... 241s Unpacking libsm6:amd64 (2:1.2.4-1) ... 241s Selecting previously unselected package libsynctex2:amd64. 241s 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(1:1.2.1-1.2build1) ... 242s Selecting previously unselected package libxmu6:amd64. 242s Preparing to unpack .../122-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 242s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 242s Selecting previously unselected package libxpm4:amd64. 242s Preparing to unpack .../123-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 242s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 242s Selecting previously unselected package libxaw7:amd64. 242s Preparing to unpack .../124-libxaw7_2%3a1.0.16-1_amd64.deb ... 242s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 242s Selecting previously unselected package libxi6:amd64. 242s Preparing to unpack .../125-libxi6_2%3a1.8.2-1_amd64.deb ... 242s Unpacking libxi6:amd64 (2:1.8.2-1) ... 242s Selecting previously unselected package libzzip-0-13t64:amd64. 242s Preparing to unpack .../126-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 242s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 242s Selecting previously unselected package zip. 242s Preparing to unpack .../127-zip_3.0-14ubuntu2_amd64.deb ... 242s Unpacking zip (3.0-14ubuntu2) ... 242s Selecting previously unselected package unzip. 242s Preparing to unpack .../128-unzip_6.0-28ubuntu6_amd64.deb ... 242s Unpacking unzip (6.0-28ubuntu6) ... 242s Selecting previously unselected package xdg-utils. 242s Preparing to unpack .../129-xdg-utils_1.2.1-2ubuntu1_all.deb ... 242s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 242s Selecting previously unselected package r-base-core. 242s Preparing to unpack .../130-r-base-core_4.4.3-1_amd64.deb ... 242s Unpacking r-base-core (4.4.3-1) ... 242s Selecting previously unselected package r-cran-littler. 242s Preparing to unpack .../131-r-cran-littler_0.3.20-2_amd64.deb ... 242s Unpacking r-cran-littler (0.3.20-2) ... 242s Selecting previously unselected package littler. 242s Preparing to unpack .../132-littler_0.3.20-2_all.deb ... 242s Unpacking littler (0.3.20-2) ... 242s Selecting previously unselected package node-bootstrap-sass. 242s Preparing to unpack .../133-node-bootstrap-sass_3.4.3-2_all.deb ... 242s Unpacking node-bootstrap-sass (3.4.3-2) ... 242s Selecting previously unselected package node-html5shiv. 243s Preparing to unpack .../134-node-html5shiv_3.7.3+dfsg-5_all.deb ... 243s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 243s Selecting previously unselected package node-normalize.css. 243s Preparing to unpack .../135-node-normalize.css_8.0.1-5_all.deb ... 243s Unpacking node-normalize.css (8.0.1-5) ... 243s Selecting previously unselected package pandoc-data. 243s Preparing to unpack .../136-pandoc-data_3.1.11.1-3build1_all.deb ... 243s Unpacking pandoc-data (3.1.11.1-3build1) ... 243s Selecting previously unselected package pandoc. 243s Preparing to unpack .../137-pandoc_3.1.11.1+ds-2_amd64.deb ... 243s Unpacking pandoc (3.1.11.1+ds-2) ... 243s Selecting previously unselected package liblzma-dev:amd64. 243s Preparing to unpack .../138-liblzma-dev_5.6.4-1_amd64.deb ... 243s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 243s Selecting previously unselected package pkgconf-bin. 243s Preparing to unpack .../139-pkgconf-bin_1.8.1-4_amd64.deb ... 243s Unpacking pkgconf-bin (1.8.1-4) ... 244s Selecting previously unselected package pkgconf:amd64. 244s Preparing to unpack .../140-pkgconf_1.8.1-4_amd64.deb ... 244s Unpacking pkgconf:amd64 (1.8.1-4) ... 244s Selecting previously unselected package libtirpc-dev:amd64. 244s Preparing to unpack .../141-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 244s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 244s Selecting previously unselected package r-base-dev. 244s Preparing to unpack .../142-r-base-dev_4.4.3-1_all.deb ... 244s Unpacking r-base-dev (4.4.3-1) ... 244s Selecting previously unselected package pkg-r-autopkgtest. 244s Preparing to unpack .../143-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 244s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 244s Selecting previously unselected package r-bioc-biocgenerics. 244s Preparing to unpack .../144-r-bioc-biocgenerics_0.52.0-2_all.deb ... 244s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 244s Selecting previously unselected package r-bioc-biobase. 244s Preparing to unpack .../145-r-bioc-biobase_2.66.0-2_amd64.deb ... 244s Unpacking r-bioc-biobase (2.66.0-2) ... 244s Selecting previously unselected package r-bioc-s4vectors. 244s Preparing to unpack .../146-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 244s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 244s Selecting previously unselected package r-bioc-iranges. 244s Preparing to unpack .../147-r-bioc-iranges_2.40.1-2_amd64.deb ... 244s Unpacking r-bioc-iranges (2.40.1-2) ... 244s Selecting previously unselected package r-cran-dbi. 244s Preparing to unpack .../148-r-cran-dbi_1.2.3-1_all.deb ... 244s Unpacking r-cran-dbi (1.2.3-1) ... 244s Selecting previously unselected package r-cran-bit. 244s Preparing to unpack .../149-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 244s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 244s Selecting previously unselected package r-cran-bit64. 244s Preparing to unpack .../150-r-cran-bit64_4.6.0-1-1ubuntu2_amd64.deb ... 244s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 244s Selecting previously unselected package r-cran-rlang. 244s Preparing to unpack .../151-r-cran-rlang_1.1.5-1_amd64.deb ... 244s Unpacking r-cran-rlang (1.1.5-1) ... 244s Selecting previously unselected package r-cran-cli. 244s Preparing to unpack .../152-r-cran-cli_3.6.4-1_amd64.deb ... 244s Unpacking r-cran-cli (3.6.4-1) ... 244s Selecting previously unselected package r-cran-glue. 244s Preparing to unpack .../153-r-cran-glue_1.8.0-1_amd64.deb ... 244s Unpacking r-cran-glue (1.8.0-1) ... 244s Selecting previously unselected package r-cran-lifecycle. 244s Preparing to unpack .../154-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 244s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 244s Selecting previously unselected package r-cran-vctrs. 244s Preparing to unpack .../155-r-cran-vctrs_0.6.5-1_amd64.deb ... 244s Unpacking r-cran-vctrs (0.6.5-1) ... 244s Selecting previously unselected package r-cran-blob. 244s Preparing to unpack .../156-r-cran-blob_1.2.4-1_all.deb ... 244s Unpacking r-cran-blob (1.2.4-1) ... 244s Selecting previously unselected package r-cran-fastmap. 244s Preparing to unpack .../157-r-cran-fastmap_1.2.0-1_amd64.deb ... 244s Unpacking r-cran-fastmap (1.2.0-1) ... 244s Selecting previously unselected package r-cran-cachem. 244s Preparing to unpack .../158-r-cran-cachem_1.1.0-1_amd64.deb ... 244s Unpacking r-cran-cachem (1.1.0-1) ... 244s Selecting previously unselected package r-cran-memoise. 244s Preparing to unpack .../159-r-cran-memoise_2.0.1-1_all.deb ... 244s Unpacking r-cran-memoise (2.0.1-1) ... 244s Selecting previously unselected package r-cran-pkgconfig. 244s Preparing to unpack .../160-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 244s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 244s Selecting previously unselected package r-cran-plogr. 244s Preparing to unpack .../161-r-cran-plogr_0.2.0-3build1_all.deb ... 244s Unpacking r-cran-plogr (0.2.0-3build1) ... 244s Selecting previously unselected package r-cran-cpp11. 244s Preparing to unpack .../162-r-cran-cpp11_0.5.2-1_all.deb ... 244s Unpacking r-cran-cpp11 (0.5.2-1) ... 245s Selecting previously unselected package r-cran-rsqlite. 245s Preparing to unpack .../163-r-cran-rsqlite_2.3.9-1_amd64.deb ... 245s Unpacking r-cran-rsqlite (2.3.9-1) ... 245s Selecting previously unselected package r-cran-curl. 245s Preparing to unpack .../164-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 245s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 245s Selecting previously unselected package r-cran-jsonlite. 245s Preparing to unpack .../165-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 245s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 245s Selecting previously unselected package r-cran-mime. 245s Preparing to unpack .../166-r-cran-mime_0.12-2_amd64.deb ... 245s Unpacking r-cran-mime (0.12-2) ... 245s Selecting previously unselected package r-cran-sys. 245s Preparing to unpack .../167-r-cran-sys_3.4.3-1_amd64.deb ... 245s Unpacking r-cran-sys (3.4.3-1) ... 245s Selecting previously unselected package r-cran-askpass. 245s Preparing to unpack .../168-r-cran-askpass_1.2.1-1_amd64.deb ... 245s Unpacking r-cran-askpass (1.2.1-1) ... 245s Selecting previously unselected package r-cran-openssl. 245s Preparing to unpack .../169-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 245s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 245s Selecting previously unselected package r-cran-r6. 245s Preparing to unpack .../170-r-cran-r6_2.6.1-1_all.deb ... 245s Unpacking r-cran-r6 (2.6.1-1) ... 245s Selecting previously unselected package r-cran-httr. 245s Preparing to unpack .../171-r-cran-httr_1.4.7+dfsg-1_all.deb ... 245s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 245s Selecting previously unselected package r-cran-png. 245s Preparing to unpack .../172-r-cran-png_0.1-8-1build2_amd64.deb ... 245s Unpacking r-cran-png (0.1-8-1build2) ... 245s Selecting previously unselected package r-bioc-zlibbioc. 245s Preparing to unpack .../173-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 245s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 245s Selecting previously unselected package r-bioc-xvector. 245s Preparing to unpack .../174-r-bioc-xvector_0.46.0-2_amd64.deb ... 245s Unpacking r-bioc-xvector (0.46.0-2) ... 245s Selecting previously unselected package r-bioc-ucsc.utils. 245s Preparing to unpack .../175-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 245s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 245s Selecting previously unselected package r-bioc-genomeinfodbdata. 245s Preparing to unpack .../176-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 245s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 245s Selecting previously unselected package r-bioc-genomeinfodb. 245s Preparing to unpack .../177-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 245s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 245s Selecting previously unselected package r-cran-crayon. 245s Preparing to unpack .../178-r-cran-crayon_1.5.3-1_all.deb ... 245s Unpacking r-cran-crayon (1.5.3-1) ... 245s Selecting previously unselected package r-bioc-biostrings. 245s Preparing to unpack .../179-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 245s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 245s Selecting previously unselected package r-bioc-keggrest. 245s Preparing to unpack .../180-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 245s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 245s Selecting previously unselected package r-bioc-annotationdbi. 245s Preparing to unpack .../181-r-bioc-annotationdbi_1.68.0-2_all.deb ... 245s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 245s Selecting previously unselected package r-cran-generics. 245s Preparing to unpack .../182-r-cran-generics_0.1.3-1_all.deb ... 245s Unpacking r-cran-generics (0.1.3-1) ... 245s Selecting previously unselected package r-cran-magrittr. 245s Preparing to unpack .../183-r-cran-magrittr_2.0.3-1_amd64.deb ... 245s Unpacking r-cran-magrittr (2.0.3-1) ... 245s Selecting previously unselected package r-cran-utf8. 246s Preparing to unpack .../184-r-cran-utf8_1.2.4-1_amd64.deb ... 246s Unpacking r-cran-utf8 (1.2.4-1) ... 246s Selecting previously unselected package r-cran-pillar. 246s Preparing to unpack .../185-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 246s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 246s Selecting previously unselected package r-cran-fansi. 246s Preparing to unpack .../186-r-cran-fansi_1.0.5-1_amd64.deb ... 246s Unpacking r-cran-fansi (1.0.5-1) ... 246s Selecting previously unselected package r-cran-tibble. 246s Preparing to unpack .../187-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 246s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 246s Selecting previously unselected package r-cran-withr. 246s Preparing to unpack .../188-r-cran-withr_3.0.2+dfsg-1_all.deb ... 246s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 246s Selecting previously unselected package r-cran-tidyselect. 246s Preparing to unpack .../189-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 246s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 246s Selecting previously unselected package r-cran-dplyr. 246s Preparing to unpack .../190-r-cran-dplyr_1.1.4-4_amd64.deb ... 246s Unpacking r-cran-dplyr (1.1.4-4) ... 246s Selecting previously unselected package r-cran-purrr. 246s Preparing to unpack .../191-r-cran-purrr_1.0.4-1_amd64.deb ... 246s Unpacking r-cran-purrr (1.0.4-1) ... 246s Selecting previously unselected package r-cran-stringi. 246s Preparing to unpack .../192-r-cran-stringi_1.8.4-1build1_amd64.deb ... 246s Unpacking r-cran-stringi (1.8.4-1build1) ... 246s Selecting previously unselected package r-cran-stringr. 246s Preparing to unpack .../193-r-cran-stringr_1.5.1-1_all.deb ... 246s Unpacking r-cran-stringr (1.5.1-1) ... 246s Selecting previously unselected package r-cran-tidyr. 246s Preparing to unpack .../194-r-cran-tidyr_1.3.1-1_amd64.deb ... 246s Unpacking r-cran-tidyr (1.3.1-1) ... 246s Selecting previously unselected package r-cran-dbplyr. 246s Preparing to unpack .../195-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ... 246s Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ... 246s Selecting previously unselected package r-cran-filelock. 246s Preparing to unpack .../196-r-cran-filelock_1.0.3-1_amd64.deb ... 246s Unpacking r-cran-filelock (1.0.3-1) ... 246s Selecting previously unselected package r-bioc-biocfilecache. 246s Preparing to unpack .../197-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 246s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 246s Selecting previously unselected package r-bioc-biocio. 246s Preparing to unpack .../198-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 246s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 246s Selecting previously unselected package r-cran-formatr. 246s Preparing to unpack .../199-r-cran-formatr_1.14-2_all.deb ... 246s Unpacking r-cran-formatr (1.14-2) ... 246s Selecting previously unselected package r-cran-lambda.r. 246s Preparing to unpack .../200-r-cran-lambda.r_1.2.4-2build1_all.deb ... 246s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 246s Selecting previously unselected package r-cran-futile.options. 246s Preparing to unpack .../201-r-cran-futile.options_1.0.1-3build1_all.deb ... 246s Unpacking r-cran-futile.options (1.0.1-3build1) ... 246s Selecting previously unselected package r-cran-futile.logger. 246s Preparing to unpack .../202-r-cran-futile.logger_1.4.3-4build1_all.deb ... 246s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 246s Selecting previously unselected package r-cran-snow. 246s Preparing to unpack .../203-r-cran-snow_1%3a0.4.4-2_all.deb ... 246s Unpacking r-cran-snow (1:0.4.4-2) ... 246s Selecting previously unselected package r-cran-codetools. 246s Preparing to unpack .../204-r-cran-codetools_0.2-20-1_all.deb ... 246s Unpacking r-cran-codetools (0.2-20-1) ... 246s Selecting previously unselected package r-cran-bh. 246s Preparing to unpack .../205-r-cran-bh_1.84.0-1_all.deb ... 246s Unpacking r-cran-bh (1.84.0-1) ... 246s Selecting previously unselected package r-bioc-biocparallel. 246s Preparing to unpack .../206-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 246s Unpacking r-bioc-biocparallel (1.40.0-2) ... 246s Selecting previously unselected package r-cran-base64enc. 246s Preparing to unpack .../207-r-cran-base64enc_0.1-3-3_amd64.deb ... 246s Unpacking r-cran-base64enc (0.1-3-3) ... 246s Selecting previously unselected package r-cran-digest. 246s Preparing to unpack .../208-r-cran-digest_0.6.37-1_amd64.deb ... 246s Unpacking r-cran-digest (0.6.37-1) ... 246s Selecting previously unselected package r-cran-htmltools. 247s Preparing to unpack .../209-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 247s Unpacking r-cran-htmltools (0.5.8.1-1) ... 247s Selecting previously unselected package r-cran-evaluate. 247s Preparing to unpack .../210-r-cran-evaluate_1.0.3-1_all.deb ... 247s Unpacking r-cran-evaluate (1.0.3-1) ... 247s Selecting previously unselected package r-cran-xfun. 247s Preparing to unpack .../211-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 247s Unpacking r-cran-xfun (0.51+dfsg-1) ... 247s Selecting previously unselected package r-cran-highr. 247s Preparing to unpack .../212-r-cran-highr_0.11+dfsg-1_all.deb ... 247s Unpacking r-cran-highr (0.11+dfsg-1) ... 247s Selecting previously unselected package r-cran-yaml. 247s Preparing to unpack .../213-r-cran-yaml_2.3.10-1_amd64.deb ... 247s Unpacking r-cran-yaml (2.3.10-1) ... 247s Selecting previously unselected package libjs-mathjax. 247s Preparing to unpack .../214-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 247s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 247s Selecting previously unselected package r-cran-knitr. 247s Preparing to unpack .../215-r-cran-knitr_1.49+dfsg-1_all.deb ... 247s Unpacking r-cran-knitr (1.49+dfsg-1) ... 247s Selecting previously unselected package r-cran-jquerylib. 247s Preparing to unpack .../216-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 247s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 247s Selecting previously unselected package r-cran-fs. 247s Preparing to unpack .../217-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 247s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 247s Selecting previously unselected package r-cran-rappdirs. 247s Preparing to unpack .../218-r-cran-rappdirs_0.3.3-1_amd64.deb ... 247s Unpacking r-cran-rappdirs (0.3.3-1) ... 248s Selecting previously unselected package r-cran-sass. 248s Preparing to unpack .../219-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 248s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 248s Selecting previously unselected package r-cran-bslib. 248s Preparing to unpack .../220-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 248s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 248s Selecting previously unselected package r-cran-fontawesome. 248s Preparing to unpack .../221-r-cran-fontawesome_0.5.3-1_all.deb ... 248s Unpacking r-cran-fontawesome (0.5.3-1) ... 248s Selecting previously unselected package r-cran-tinytex. 248s Preparing to unpack .../222-r-cran-tinytex_0.56-1_all.deb ... 248s Unpacking r-cran-tinytex (0.56-1) ... 248s Selecting previously unselected package libjs-modernizr. 248s Preparing to unpack .../223-libjs-modernizr_3.13.0-0.1_all.deb ... 248s Unpacking libjs-modernizr (3.13.0-0.1) ... 248s Selecting previously unselected package r-cran-pkgkitten. 248s Preparing to unpack .../224-r-cran-pkgkitten_0.2.4-1_all.deb ... 248s Unpacking r-cran-pkgkitten (0.2.4-1) ... 248s Selecting previously unselected package r-cran-rcpp. 248s Preparing to unpack .../225-r-cran-rcpp_1.0.14-1_amd64.deb ... 248s Unpacking r-cran-rcpp (1.0.14-1) ... 248s Selecting previously unselected package r-cran-later. 248s Preparing to unpack .../226-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 248s Unpacking r-cran-later (1.4.1+dfsg-1) ... 248s Selecting previously unselected package r-cran-promises. 248s Preparing to unpack .../227-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 248s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 248s Selecting previously unselected package r-cran-httpuv. 248s Preparing to unpack .../228-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 248s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 248s Selecting previously unselected package r-cran-xtable. 248s Preparing to unpack .../229-r-cran-xtable_1%3a1.8-4-2_all.deb ... 248s Unpacking r-cran-xtable (1:1.8-4-2) ... 248s Selecting previously unselected package r-cran-sourcetools. 248s Preparing to unpack .../230-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 248s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 248s Selecting previously unselected package r-cran-commonmark. 248s Preparing to unpack .../231-r-cran-commonmark_1.9.2-2_amd64.deb ... 248s Unpacking r-cran-commonmark (1.9.2-2) ... 248s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 248s Preparing to unpack .../232-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 248s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 248s Selecting previously unselected package r-cran-shiny. 248s Preparing to unpack .../233-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 248s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 248s Selecting previously unselected package r-cran-rmarkdown. 248s Preparing to unpack .../234-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 248s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 248s Selecting previously unselected package r-cran-bookdown. 248s Preparing to unpack .../235-r-cran-bookdown_0.42+dfsg-1_all.deb ... 248s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 249s Selecting previously unselected package r-cran-biocmanager. 249s Preparing to unpack .../236-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 249s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 249s Selecting previously unselected package tex-common. 249s Preparing to unpack .../237-tex-common_6.19_all.deb ... 249s Unpacking tex-common (6.19) ... 249s Selecting previously unselected package t1utils. 249s Preparing to unpack .../238-t1utils_1.41-4build3_amd64.deb ... 249s Unpacking t1utils (1.41-4build3) ... 249s Selecting previously unselected package texlive-binaries. 249s Preparing to unpack .../239-texlive-binaries_2024.20240313.70630+ds-6_amd64.deb ... 249s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ... 249s Selecting previously unselected package texlive-base. 249s Preparing to unpack .../240-texlive-base_2024.20250114-1_all.deb ... 249s Unpacking texlive-base (2024.20250114-1) ... 250s Selecting previously unselected package texlive-latex-base. 250s Preparing to unpack .../241-texlive-latex-base_2024.20250114-1_all.deb ... 250s Unpacking texlive-latex-base (2024.20250114-1) ... 250s Selecting previously unselected package texlive-bibtex-extra. 250s Preparing to unpack .../242-texlive-bibtex-extra_2024.20250114-1_all.deb ... 250s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 252s Selecting previously unselected package r-bioc-biocversion. 252s Preparing to unpack .../243-r-bioc-biocversion_3.20.0-2_all.deb ... 252s Unpacking r-bioc-biocversion (3.20.0-2) ... 252s Selecting previously unselected package r-bioc-biocstyle. 252s Preparing to unpack .../244-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 252s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 252s Selecting previously unselected package r-cran-hms. 252s Preparing to unpack .../245-r-cran-hms_1.1.3-1_all.deb ... 252s Unpacking r-cran-hms (1.1.3-1) ... 252s Selecting previously unselected package r-cran-prettyunits. 252s Preparing to unpack .../246-r-cran-prettyunits_1.2.0-1_all.deb ... 252s Unpacking r-cran-prettyunits (1.2.0-1) ... 252s Selecting previously unselected package r-cran-progress. 252s Preparing to unpack .../247-r-cran-progress_1.2.3-1_all.deb ... 252s Unpacking r-cran-progress (1.2.3-1) ... 252s Selecting previously unselected package r-cran-httr2. 252s Preparing to unpack .../248-r-cran-httr2_1.1.1-1_all.deb ... 252s Unpacking r-cran-httr2 (1.1.1-1) ... 252s Selecting previously unselected package r-cran-xml2. 252s Preparing to unpack .../249-r-cran-xml2_1.3.7-1_amd64.deb ... 252s Unpacking r-cran-xml2 (1.3.7-1) ... 252s Selecting previously unselected package r-bioc-biomart. 252s Preparing to unpack .../250-r-bioc-biomart_2.62.1+dfsg-1_all.deb ... 252s Unpacking r-bioc-biomart (2.62.1+dfsg-1) ... 252s Selecting previously unselected package r-cran-lattice. 252s Preparing to unpack .../251-r-cran-lattice_0.22-6-1_amd64.deb ... 252s Unpacking r-cran-lattice (0.22-6-1) ... 252s Selecting previously unselected package r-cran-matrix. 252s Preparing to unpack .../252-r-cran-matrix_1.7-3-1_amd64.deb ... 252s Unpacking r-cran-matrix (1.7-3-1) ... 252s Selecting previously unselected package r-cran-matrixstats. 252s Preparing to unpack .../253-r-cran-matrixstats_1.5.0-1_amd64.deb ... 252s Unpacking r-cran-matrixstats (1.5.0-1) ... 252s Selecting previously unselected package r-bioc-matrixgenerics. 252s Preparing to unpack .../254-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 252s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 252s Selecting previously unselected package r-cran-abind. 252s Preparing to unpack .../255-r-cran-abind_1.4-8-1_all.deb ... 252s Unpacking r-cran-abind (1.4-8-1) ... 252s Selecting previously unselected package r-bioc-s4arrays. 252s Preparing to unpack .../256-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 252s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 252s Selecting previously unselected package r-bioc-sparsearray. 253s Preparing to unpack .../257-r-bioc-sparsearray_1.6.2+dfsg-1_amd64.deb ... 253s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 253s Selecting previously unselected package r-bioc-delayedarray. 253s Preparing to unpack .../258-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 253s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 253s Selecting previously unselected package r-bioc-genomicranges. 253s Preparing to unpack .../259-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 253s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 253s Selecting previously unselected package r-bioc-summarizedexperiment. 253s Preparing to unpack .../260-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 253s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 253s Selecting previously unselected package r-cran-bitops. 253s Preparing to unpack .../261-r-cran-bitops_1.0-9-1_amd64.deb ... 253s Unpacking r-cran-bitops (1.0-9-1) ... 253s Selecting previously unselected package r-bioc-rhtslib. 253s Preparing to unpack .../262-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ... 253s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 253s Selecting previously unselected package r-bioc-rsamtools. 253s Preparing to unpack .../263-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ... 253s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 253s Selecting previously unselected package r-bioc-genomicalignments. 253s Preparing to unpack .../264-r-bioc-genomicalignments_1.42.0-2_amd64.deb ... 253s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 253s Selecting previously unselected package r-cran-xml. 253s Preparing to unpack .../265-r-cran-xml_3.99-0.18-1_amd64.deb ... 253s Unpacking r-cran-xml (3.99-0.18-1) ... 253s Selecting previously unselected package r-cran-rcurl. 253s Preparing to unpack .../266-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 253s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 253s Selecting previously unselected package r-cran-rjson. 253s Preparing to unpack .../267-r-cran-rjson_0.2.23-1_amd64.deb ... 253s Unpacking r-cran-rjson (0.2.23-1) ... 253s Selecting previously unselected package r-cran-restfulr. 253s Preparing to unpack .../268-r-cran-restfulr_0.0.15-1_amd64.deb ... 253s Unpacking r-cran-restfulr (0.0.15-1) ... 253s Selecting previously unselected package r-bioc-rtracklayer. 253s Preparing to unpack .../269-r-bioc-rtracklayer_1.66.0-2_amd64.deb ... 253s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 253s Selecting previously unselected package r-bioc-genomicfeatures. 253s Preparing to unpack .../270-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ... 253s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 253s Selecting previously unselected package r-bioc-pwalign. 253s Preparing to unpack .../271-r-bioc-pwalign_1.2.0-2_amd64.deb ... 253s Unpacking r-bioc-pwalign (1.2.0-2) ... 253s Selecting previously unselected package r-cran-hwriter. 253s Preparing to unpack .../272-r-cran-hwriter_1.3.2.1-1_all.deb ... 253s Unpacking r-cran-hwriter (1.3.2.1-1) ... 253s Selecting previously unselected package r-cran-jpeg. 253s Preparing to unpack .../273-r-cran-jpeg_0.1-10-1_amd64.deb ... 253s Unpacking r-cran-jpeg (0.1-10-1) ... 253s Selecting previously unselected package r-cran-rcolorbrewer. 253s Preparing to unpack .../274-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 253s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 253s Selecting previously unselected package r-cran-deldir. 253s Preparing to unpack .../275-r-cran-deldir_2.0-4-1build1_amd64.deb ... 253s Unpacking r-cran-deldir (2.0-4-1build1) ... 253s Selecting previously unselected package r-cran-rcppeigen. 254s Preparing to unpack .../276-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 254s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 254s Selecting previously unselected package r-cran-interp. 254s Preparing to unpack .../277-r-cran-interp_1.1-6-1_amd64.deb ... 254s Unpacking r-cran-interp (1.1-6-1) ... 254s Selecting previously unselected package r-cran-mass. 254s Preparing to unpack .../278-r-cran-mass_7.3-64-1_amd64.deb ... 254s Unpacking r-cran-mass (7.3-64-1) ... 254s Selecting previously unselected package r-cran-latticeextra. 254s Preparing to unpack .../279-r-cran-latticeextra_0.6-30-1_all.deb ... 254s Unpacking r-cran-latticeextra (0.6-30-1) ... 254s Selecting previously unselected package r-bioc-shortread. 254s Preparing to unpack .../280-r-bioc-shortread_1.64.0-3_amd64.deb ... 254s Unpacking r-bioc-shortread (1.64.0-3) ... 254s Selecting previously unselected package r-cran-runit. 254s Preparing to unpack .../281-r-cran-runit_0.4.33-1_all.deb ... 254s Unpacking r-cran-runit (0.4.33-1) ... 254s Setting up libjs-json (0~20221030+~1.0.8-1) ... 254s Setting up javascript-common (12) ... 254s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 254s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 254s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 254s Setting up libncurses-dev:amd64 (6.5+20250216-2) ... 254s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 254s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 254s Setting up libxpm4:amd64 (1:3.5.17-1build2) ... 254s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 254s Setting up libxi6:amd64 (2:1.8.2-1) ... 254s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 254s Setting up libdatrie1:amd64 (0.2.13-3build1) ... 254s Setting up libjs-popper.js (1.16.1+ds-6) ... 254s Setting up libxcb-render0:amd64 (1.17.0-2) ... 254s 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r-bioc-biostrings (2.74.1+dfsg-2) ... 259s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 259s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 259s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 259s Setting up r-cran-bookdown (0.42+dfsg-1) ... 259s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 259s Setting up r-bioc-pwalign (1.2.0-2) ... 259s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 259s Setting up r-bioc-annotationdbi (1.68.0-2) ... 259s Setting up r-bioc-biomart (2.62.1+dfsg-1) ... 259s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 259s Setting up r-bioc-genomicalignments (1.42.0-2) ... 259s Setting up r-bioc-rtracklayer (1.66.0-2) ... 259s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 259s Setting up r-bioc-shortread (1.64.0-3) ... 259s Processing triggers for libc-bin (2.41-1ubuntu2) ... 259s Processing triggers for man-db (2.13.0-1) ... 261s Processing triggers for install-info (7.1.1-1) ... 261s Processing triggers for tex-common (6.19) ... 261s Running updmap-sys. This may take some time... done. 261s Running mktexlsr /var/lib/texmf ... done. 261s Building format(s) --all. 288s This may take some time... done. 290s autopkgtest [22:05:55]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 290s autopkgtest [22:05:55]: test pkg-r-autopkgtest: [----------------------- 290s Test: Try to load the R library ShortRead 290s 290s R version 4.4.3 (2025-02-28) -- "Trophy Case" 290s Copyright (C) 2025 The R Foundation for Statistical Computing 290s Platform: x86_64-pc-linux-gnu 290s 290s R is free software and comes with ABSOLUTELY NO WARRANTY. 290s You are welcome to redistribute it under certain conditions. 290s Type 'license()' or 'licence()' for distribution details. 290s 290s R is a collaborative project with many contributors. 290s Type 'contributors()' for more information and 290s 'citation()' on how to cite R or R packages in publications. 290s 290s Type 'demo()' for some demos, 'help()' for on-line help, or 290s 'help.start()' for an HTML browser interface to help. 290s Type 'q()' to quit R. 290s 290s > library('ShortRead') 290s Loading required package: BiocGenerics 290s 290s Attaching package: ‘BiocGenerics’ 290s 290s The following objects are masked from ‘package:stats’: 290s 290s IQR, mad, sd, var, xtabs 290s 290s The following objects are masked from ‘package:base’: 290s 290s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 290s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 290s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 290s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 290s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 290s table, tapply, union, unique, unsplit, which.max, which.min 290s 290s Loading required package: BiocParallel 290s Loading required package: Biostrings 290s Loading required package: S4Vectors 290s Loading required package: stats4 291s 291s Attaching package: ‘S4Vectors’ 291s 291s The following object is masked from ‘package:utils’: 291s 291s findMatches 291s 291s The following objects are masked from ‘package:base’: 291s 291s expand.grid, I, unname 291s 291s Loading required package: IRanges 291s Loading required package: XVector 292s Loading required package: GenomeInfoDb 292s 292s Attaching package: ‘Biostrings’ 292s 292s The following object is masked from ‘package:base’: 292s 292s strsplit 292s 292s Loading required package: Rsamtools 292s Loading required package: GenomicRanges 293s Loading required package: GenomicAlignments 293s Loading required package: SummarizedExperiment 293s Loading required package: MatrixGenerics 293s Loading required package: matrixStats 293s 293s Attaching package: ‘MatrixGenerics’ 293s 293s The following objects are masked from ‘package:matrixStats’: 293s 293s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 293s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 293s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 293s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 293s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 293s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 293s colWeightedMeans, colWeightedMedians, colWeightedSds, 293s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 293s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 293s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 293s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 293s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 293s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 293s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 293s rowWeightedSds, rowWeightedVars 293s 293s Loading required package: Biobase 293s Welcome to Bioconductor 293s 293s Vignettes contain introductory material; view with 293s 'browseVignettes()'. To cite Bioconductor, see 293s 'citation("Biobase")', and for packages 'citation("pkgname")'. 293s 293s 293s Attaching package: ‘Biobase’ 293s 293s The following object is masked from ‘package:MatrixGenerics’: 293s 293s rowMedians 293s 293s The following objects are masked from ‘package:matrixStats’: 293s 293s anyMissing, rowMedians 293s 297s > 297s > 297s Other tests are currently unsupported! 297s They will be progressively added. 298s autopkgtest [22:06:03]: test pkg-r-autopkgtest: -----------------------] 298s pkg-r-autopkgtest PASS 298s autopkgtest [22:06:03]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 298s autopkgtest [22:06:03]: @@@@@@@@@@@@@@@@@@@@ summary 298s pkg-r-autopkgtest PASS 315s nova [W] Skipping flock for amd64 315s Creating nova instance adt-plucky-amd64-r-bioc-shortread-20250315-220105-juju-7f2275-prod-proposed-migration-environment-20-1ff4ee27-a330-4a8d-ab3d-4b048fa6e78b from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 315s nova [W] Timed out waiting for f36e0b8e-a7f8-4bd5-a8b2-1bac11b4a274 to get deleted.