0s autopkgtest [22:00:58]: starting date and time: 2025-03-15 22:00:58+0000 0s autopkgtest [22:00:58]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [22:00:58]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.x1dqqh7e/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-scran --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-32.secgroup --name adt-plucky-amd64-r-bioc-scran-20250315-220058-juju-7f2275-prod-proposed-migration-environment-15-eb8d9a5d-e492-4f0d-a475-27cf187f9285 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 54s autopkgtest [22:01:52]: testbed dpkg architecture: amd64 55s autopkgtest [22:01:53]: testbed apt version: 2.9.31ubuntu1 55s autopkgtest [22:01:53]: @@@@@@@@@@@@@@@@@@@@ test bed setup 55s autopkgtest [22:01:53]: testbed release detected to be: None 56s autopkgtest [22:01:54]: updating testbed package index (apt update) 56s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 57s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 57s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 57s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 57s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 57s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 57s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 57s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 57s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 58s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 58s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 58s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 58s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 58s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 58s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 58s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 58s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 59s Fetched 1265 kB in 2s (667 kB/s) 59s Reading package lists... 60s + lsb_release --codename --short 60s + RELEASE=plucky 60s + cat 60s + [ plucky != trusty ] 60s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 60s Reading package lists... 60s Building dependency tree... 60s Reading state information... 61s Calculating upgrade... 61s Calculating upgrade... 61s The following package was automatically installed and is no longer required: 61s libnl-genl-3-200 61s Use 'sudo apt autoremove' to remove it. 61s The following NEW packages will be installed: 61s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 61s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 61s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 61s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 61s The following packages will be upgraded: 61s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 61s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 61s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 61s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 61s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 61s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 61s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 61s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 61s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 61s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 61s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 61s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 61s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 61s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 61s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 61s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 61s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 61s parted pci.ids pciutils pinentry-curses python-apt-common python3 61s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 61s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 61s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 61s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 61s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 61s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 61s xz-utils 61s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 61s Need to get 829 MB of archives. 61s After this operation, 325 MB of additional disk space will be used. 61s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 62s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 62s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 63s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 65s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 67s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 68s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 69s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 69s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 69s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 69s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 69s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 69s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 69s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 69s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 69s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 69s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 69s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 69s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 69s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 69s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 70s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 70s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 70s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 70s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 70s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 70s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 70s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 70s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 70s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 70s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 70s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 70s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 70s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 71s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 71s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 71s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 71s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 71s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 71s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 71s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 71s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 71s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 71s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 71s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 71s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 71s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 72s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 72s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 72s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 72s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 72s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 72s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 72s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 72s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 72s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 72s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 72s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 72s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 72s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 72s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 72s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 72s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 72s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 72s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 72s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 72s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 72s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 72s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 72s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 72s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 72s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 72s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 72s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 72s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 72s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 72s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 72s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 72s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 72s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 72s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 72s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 72s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 72s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 72s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 73s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 73s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 73s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 73s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 73s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 73s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 73s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 73s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 73s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 73s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 73s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 73s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 73s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 73s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 73s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 73s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 73s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 74s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 74s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 74s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 76s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 76s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 76s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 76s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 101s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 101s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 101s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 101s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 101s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 101s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 101s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 101s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 102s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 103s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 107s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 107s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 107s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 107s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 107s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 107s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 108s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 108s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 108s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 108s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 108s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 108s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 108s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 108s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 108s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 108s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 108s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 108s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 108s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 109s Preconfiguring packages ... 109s Fetched 829 MB in 47s (17.6 MB/s) 109s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 114s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu6_amd64.deb ... 114s Unpacking libseccomp2:amd64 (2.5.5-1ubuntu6) over (2.5.5-1ubuntu5) ... 114s Setting up libseccomp2:amd64 (2.5.5-1ubuntu6) ... 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 114s Preparing to unpack .../libselinux1_3.7-3ubuntu3_amd64.deb ... 114s Unpacking libselinux1:amd64 (3.7-3ubuntu3) over (3.7-3ubuntu2) ... 114s Setting up libselinux1:amd64 (3.7-3ubuntu3) ... 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 114s Preparing to unpack .../libapparmor1_4.1.0~beta5-0ubuntu8_amd64.deb ... 114s Unpacking libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) over (4.1.0~beta5-0ubuntu5) ... 114s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 114s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 114s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 114s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 115s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 115s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 115s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 115s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 115s Setting up python3-minimal (3.13.2-2) ... 116s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 116s Preparing to unpack .../0-libsqlite3-0_3.46.1-2_amd64.deb ... 116s Unpacking libsqlite3-0:amd64 (3.46.1-2) over (3.46.1-1) ... 116s Preparing to unpack .../1-python3.13_3.13.2-2_amd64.deb ... 116s Unpacking python3.13 (3.13.2-2) over (3.13.2-1) ... 116s Preparing to unpack .../2-python3.13-minimal_3.13.2-2_amd64.deb ... 116s Unpacking python3.13-minimal (3.13.2-2) over (3.13.2-1) ... 116s Preparing to unpack .../3-libpython3.13-minimal_3.13.2-2_amd64.deb ... 116s Unpacking libpython3.13-minimal:amd64 (3.13.2-2) over (3.13.2-1) ... 116s Preparing to unpack .../4-libpython3.13-stdlib_3.13.2-2_amd64.deb ... 116s Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 117s Preparing to unpack .../5-libpython3-stdlib_3.13.2-2_amd64.deb ... 117s Unpacking libpython3-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 117s Preparing to unpack .../6-rsync_3.4.1+ds1-3_amd64.deb ... 117s Unpacking rsync (3.4.1+ds1-3) over (3.4.1-0syncable1) ... 117s Selecting previously unselected package libdebuginfod-common. 117s Preparing to unpack .../7-libdebuginfod-common_0.192-4_all.deb ... 117s Unpacking libdebuginfod-common (0.192-4) ... 117s Preparing to unpack .../8-libsemanage-common_3.7-2.1build1_all.deb ... 117s Unpacking libsemanage-common (3.7-2.1build1) over (3.7-2.1) ... 117s Setting up libsemanage-common (3.7-2.1build1) ... 117s (Reading database ... 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(1.0.6-6) over (1.0.6-5) ... 131s Preparing to unpack .../79-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ... 131s Unpacking python3-rpds-py (0.21.0-2ubuntu2) over (0.21.0-2ubuntu1) ... 131s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 131s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 131s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 131s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 131s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 131s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 131s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 131s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 131s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 131s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 132s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 132s Setting up media-types (13.0.0) ... 132s Installing new version of config file /etc/mime.types ... 132s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 132s Setting up ubuntu-kernel-accessories (1.549) ... 132s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 132s Setting up pci.ids (0.0~2025.03.09-1) ... 132s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 132s Setting up apt-utils (2.9.33) ... 132s Setting up libdebuginfod-common (0.192-4) ... 132s Setting up exfatprogs (1.2.8-1) ... 132s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 132s Setting up bpftool (7.6.0+6.14.0-10.10) ... 132s Setting up libestr0:amd64 (0.1.11-2) ... 132s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 132s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 132s Setting up dosfstools (4.2-1.2) ... 132s Setting up rsyslog (8.2412.0-2ubuntu2) ... 132s info: The user `syslog' is already a member of `adm'. 133s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 133s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 133s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 133s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 133s Setting up systemd (257.3-1ubuntu3) ... 133s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 133s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 133s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 134s Setting up libparted2t64:amd64 (3.6-5) ... 134s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 134s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 134s Setting up linux-headers-generic (6.14.0-10.10) ... 134s Setting up libjemalloc2:amd64 (5.3.0-3) ... 134s Setting up locales (2.41-1ubuntu1) ... 134s Installing new version of config file /etc/locale.alias ... 135s Generating locales (this might take a while)... 136s en_US.UTF-8... done 136s Generation complete. 136s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 136s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 136s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 136s Installing new version of config file /etc/apparmor.d/fusermount3 ... 136s Installing new version of config file /etc/apparmor.d/lsusb ... 136s Installing new version of config file /etc/apparmor.d/openvpn ... 137s Reloading AppArmor profiles 139s Setting up libftdi1-2:amd64 (1.5-8build1) ... 139s Setting up libglib2.0-data (2.84.0-1) ... 139s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 139s Setting up libncurses6:amd64 (6.5+20250216-2) ... 139s Setting up strace (6.13+ds-1ubuntu1) ... 139s Setting up xz-utils (5.6.4-1) ... 139s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 139s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 139s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 139s Setting up udev (257.3-1ubuntu3) ... 140s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 142s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 142s Setting up libpci3:amd64 (1:3.13.0-2) ... 142s Setting up whiptail (0.52.24-4ubuntu2) ... 142s Setting up python-apt-common (2.9.9build1) ... 142s Setting up pnp.ids (0.393-3) ... 142s Setting up libnl-3-200:amd64 (3.7.0-1) ... 142s Setting up python3.13-minimal (3.13.2-2) ... 143s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 143s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 143s Setting up libc-dev-bin (2.41-1ubuntu1) ... 143s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 143s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 143s Setting up rsync (3.4.1+ds1-3) ... 144s rsync.service is a disabled or a static unit not running, not starting it. 144s Setting up python3.13-gdbm (3.13.2-2) ... 144s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 144s Setting up systemd-resolved (257.3-1ubuntu3) ... 144s Setting up initramfs-tools-bin (0.146ubuntu1) ... 144s Setting up ncurses-term (6.5+20250216-2) ... 144s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 144s Setting up libpython3.13:amd64 (3.13.2-2) ... 144s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 144s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 144s Setting up systemd-sysv (257.3-1ubuntu3) ... 144s Setting up linux-headers-virtual (6.14.0-10.10) ... 144s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 144s Setting up python3.13 (3.13.2-2) ... 145s Setting up htop (3.4.0-2) ... 145s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 147s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 147s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 147s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 147s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 147s Setting up parted (3.6-5) ... 147s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 147s Setting up python3 (3.13.2-2) ... 147s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 147s Setting up python3-markupsafe (2.1.5-1build4) ... 148s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 150s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 150s Setting up hwdata (0.393-3) ... 150s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 150s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 150s No schema files found: doing nothing. 150s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 150s Setting up linux-perf (6.14.0-10.10) ... 150s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 150s Setting up pciutils (1:3.13.0-2) ... 150s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 150s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 150s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 150s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 150s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 150s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 150s Setting up curl (8.12.1-3ubuntu1) ... 150s Setting up linux-image-virtual (6.14.0-10.10) ... 150s Setting up initramfs-tools-core (0.146ubuntu1) ... 150s Setting up linux-tools-common (6.14.0-10.10) ... 150s Setting up python3-systemd (235-1build6) ... 150s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 150s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 150s Setting up linux-image-generic (6.14.0-10.10) ... 150s Setting up python3-dbus (1.3.2-5build5) ... 150s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 150s Setting up initramfs-tools (0.146ubuntu1) ... 150s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 150s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 150s update-initramfs: deferring update (trigger activated) 150s Setting up linux-generic (6.14.0-10.10) ... 150s Setting up ubuntu-minimal (1.549) ... 150s Setting up python3-apt (2.9.9build1) ... 151s Setting up python3-bcrypt (4.2.0-2.1build1) ... 151s Setting up python3-yaml (6.0.2-1build2) ... 151s Setting up libfwupd3:amd64 (2.0.6-4) ... 151s Setting up python3-lazr.uri (1.0.6-6) ... 151s Setting up binutils (2.44-3ubuntu1) ... 151s Setting up ubuntu-standard (1.549) ... 151s Setting up cloud-init-base (25.1-0ubuntu3) ... 152s Setting up linux-virtual (6.14.0-10.10) ... 152s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 152s Setting up python3-gi (3.50.0-4build1) ... 153s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 153s Setting up fwupd (2.0.6-4) ... 153s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 154s Setting up cloud-init (25.1-0ubuntu3) ... 154s Processing triggers for man-db (2.13.0-1) ... 155s Processing triggers for dbus (1.16.2-1ubuntu1) ... 155s Processing triggers for shared-mime-info (2.4-5) ... 155s Warning: program compiled against libxml 212 using older 209 156s Processing triggers for libc-bin (2.41-1ubuntu1) ... 156s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 156s /etc/kernel/postinst.d/initramfs-tools: 156s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 156s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 166s /etc/kernel/postinst.d/zz-update-grub: 166s Sourcing file `/etc/default/grub' 166s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 166s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 166s Generating grub configuration file ... 167s Found linux image: /boot/vmlinuz-6.14.0-10-generic 167s Found initrd image: /boot/initrd.img-6.14.0-10-generic 167s Found linux image: /boot/vmlinuz-6.12.0-16-generic 167s Found initrd image: /boot/initrd.img-6.12.0-16-generic 167s Found linux image: /boot/vmlinuz-6.11.0-8-generic 167s Found initrd image: /boot/initrd.img-6.11.0-8-generic 167s Warning: os-prober will not be executed to detect other bootable partitions. 167s Systems on them will not be added to the GRUB boot configuration. 167s Check GRUB_DISABLE_OS_PROBER documentation entry. 167s Adding boot menu entry for UEFI Firmware Settings ... 167s done 167s Processing triggers for initramfs-tools (0.146ubuntu1) ... 167s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 167s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 179s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 179s + /usr/lib/apt/apt-helper analyze-pattern ?true 179s + uname -r 179s + sed s/\./\\./g 179s + running_kernel_pattern=^linux-.*6\.12\.0-16-generic.* 179s + apt list ?obsolete 179s + tail -n+2 179s + cut -d/ -f1 179s + grep -v ^linux-.*6\.12\.0-16-generic.* 180s + obsolete_pkgs=linux-headers-6.11.0-8-generic 180s linux-headers-6.11.0-8 180s linux-headers-6.12.0-16 180s linux-image-6.11.0-8-generic 180s linux-modules-6.11.0-8-generic 180s linux-tools-6.11.0-8-generic 180s linux-tools-6.11.0-8 180s linux-tools-6.12.0-16 180s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-headers-6.12.0-16 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 linux-tools-6.12.0-16 180s Reading package lists... 180s Building dependency tree... 180s Reading state information... 181s Solving dependencies... 181s The following packages will be REMOVED: 181s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 181s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 181s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 181s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 181s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 181s linux-tools-6.12.0-16-generic* 181s 0 upgraded, 0 newly installed, 15 to remove and 5 not upgraded. 181s After this operation, 371 MB disk space will be freed. 181s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 181s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 181s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 181s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 181s Removing libpython3.12t64:amd64 (3.12.9-1) ... 181s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 181s Removing libnsl2:amd64 (1.3.0-3build3) ... 181s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 181s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 182s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 184s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 184s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 187s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 187s /etc/kernel/postrm.d/initramfs-tools: 187s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 187s /etc/kernel/postrm.d/zz-update-grub: 187s Sourcing file `/etc/default/grub' 187s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 187s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 187s Generating grub configuration file ... 187s Found linux image: /boot/vmlinuz-6.14.0-10-generic 187s Found initrd image: /boot/initrd.img-6.14.0-10-generic 187s Found linux image: /boot/vmlinuz-6.12.0-16-generic 187s Found initrd image: /boot/initrd.img-6.12.0-16-generic 188s Warning: os-prober will not be executed to detect other bootable partitions. 188s Systems on them will not be added to the GRUB boot configuration. 188s Check GRUB_DISABLE_OS_PROBER documentation entry. 188s Adding boot menu entry for UEFI Firmware Settings ... 188s done 188s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 188s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 188s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 188s Processing triggers for libc-bin (2.41-1ubuntu1) ... 188s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84830 files and directories currently installed.) 188s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 188s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 188s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 188s + grep -q trusty /etc/lsb-release 188s + [ ! -d /usr/share/doc/unattended-upgrades ] 188s + [ ! -d /usr/share/doc/lxd ] 188s + [ ! -d /usr/share/doc/lxd-client ] 188s + [ ! -d /usr/share/doc/snapd ] 188s + type iptables 188s + cat 188s + chmod 755 /etc/rc.local 188s + . /etc/rc.local 188s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 188s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 188s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 188s + uname -m 188s + [ x86_64 = ppc64le ] 188s + [ -d /run/systemd/system ] 188s + systemd-detect-virt --quiet --vm 188s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 188s + cat 188s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 188s + echo COMPRESS=lz4 188s autopkgtest [22:04:06]: upgrading testbed (apt dist-upgrade and autopurge) 188s Reading package lists... 189s Building dependency tree... 189s Reading state information... 189s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 189s Starting 2 pkgProblemResolver with broken count: 0 189s Done 189s Entering ResolveByKeep 190s 190s Calculating upgrade... 190s The following packages will be upgraded: 190s libc-bin libc-dev-bin libc6 libc6-dev locales 190s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 190s Need to get 10.5 MB of archives. 190s After this operation, 1024 B of additional disk space will be used. 190s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 191s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 191s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 191s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 191s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 191s Preconfiguring packages ... 191s Fetched 10.5 MB in 1s (8828 kB/s) 192s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 192s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 192s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 192s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 192s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 192s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 192s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 192s Setting up libc6:amd64 (2.41-1ubuntu2) ... 192s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 192s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 192s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 192s Setting up libc-bin (2.41-1ubuntu2) ... 192s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 192s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 192s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 193s Setting up locales (2.41-1ubuntu2) ... 193s Generating locales (this might take a while)... 195s en_US.UTF-8... done 195s Generation complete. 195s Setting up libc-dev-bin (2.41-1ubuntu2) ... 195s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 195s Processing triggers for man-db (2.13.0-1) ... 195s Processing triggers for systemd (257.3-1ubuntu3) ... 196s Reading package lists... 197s Building dependency tree... 197s Reading state information... 197s Starting pkgProblemResolver with broken count: 0 197s Starting 2 pkgProblemResolver with broken count: 0 197s Done 197s Solving dependencies... 197s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 197s autopkgtest [22:04:15]: rebooting testbed after setup commands that affected boot 223s autopkgtest [22:04:41]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 225s autopkgtest [22:04:43]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-scran 227s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-scran 1.34.0+dfsg-3 (dsc) [2491 B] 227s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-scran 1.34.0+dfsg-3 (tar) [450 kB] 227s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-scran 1.34.0+dfsg-3 (diff) [4184 B] 228s gpgv: Signature made Tue Jan 21 13:17:21 2025 UTC 228s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 228s gpgv: issuer "crusoe@debian.org" 228s gpgv: Can't check signature: No public key 228s dpkg-source: warning: cannot verify inline signature for ./r-bioc-scran_1.34.0+dfsg-3.dsc: no acceptable signature found 228s autopkgtest [22:04:46]: testing package r-bioc-scran version 1.34.0+dfsg-3 229s autopkgtest [22:04:47]: build not needed 232s autopkgtest [22:04:50]: test pkg-r-autopkgtest: preparing testbed 233s Reading package lists... 233s Building dependency tree... 233s Reading state information... 233s Starting pkgProblemResolver with broken count: 0 233s Starting 2 pkgProblemResolver with broken count: 0 233s Done 234s The following NEW packages will be installed: 234s build-essential comerr-dev cpp cpp-14 cpp-14-x86-64-linux-gnu 234s cpp-x86-64-linux-gnu dctrl-tools fontconfig fontconfig-config 234s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 234s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-14 234s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 234s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 234s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu hdf5-helpers 234s icu-devtools javascript-common krb5-multidev libaec-dev libaec0 libamd3 234s libasan8 libbibtex-parser-perl libblas-dev libblas3 libblosc1 libboost-dev 234s libboost1.83-dev libbrotli-dev libbz2-dev libcairo2 libcc1-0 libcolamd3 234s libcurl4-openssl-dev libdatrie1 libdeflate-dev libdeflate0 libevent-2.1-7t64 234s libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 libglpk40 234s libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 234s libgnutls28-dev libgomp1 libgraphite2-3 libgssrpc4t64 libharfbuzz0b 234s libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 234s libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libhnswlib-dev libhwasan0 libice6 234s libicu-dev libidn2-dev libio-string-perl libisl23 libitm1 libjbig0 234s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 234s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 234s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 234s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 234s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 234s libjs-twitter-bootstrap-datepicker libkadm5clnt-mit12 libkadm5srv-mit12 234s libkdb5-10t64 libkpathsea6 libkrb5-dev liblapack-dev liblapack3 234s liblatex-tounicode-perl libldap-dev liblerc4 liblsan0 libltdl7 liblua5.4-0 234s liblzma-dev libmpc3 libmpfi0 libncurses-dev libnghttp2-dev libp11-kit-dev 234s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 234s libpaper2 libpcg-cpp-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev 234s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl-dev 234s libptexenc1 libquadmath0 libreadline-dev librtmp-dev libsharpyuv0 libsm6 234s libsnappy1v5 libssh2-1-dev libssl-dev libstdc++-14-dev libsuitesparseconfig7 234s libsynctex2 libsz2 libtasn1-6-dev libtcl8.6 libteckit0 libtexlua53-5 234s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 234s libunbound8 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 234s libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzstd-dev libzzip-0-13t64 234s littler nettle-dev node-bootstrap-sass node-html5shiv node-normalize.css 234s pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 234s r-base-dev r-bioc-alabaster.base r-bioc-alabaster.matrix 234s r-bioc-alabaster.ranges r-bioc-alabaster.sce r-bioc-alabaster.schemas 234s r-bioc-alabaster.se r-bioc-annotationdbi r-bioc-annotationfilter 234s r-bioc-annotationhub r-bioc-assorthead r-bioc-beachmat r-bioc-biobase 234s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocneighbors 234s r-bioc-biocparallel r-bioc-biocsingular r-bioc-biocstyle r-bioc-biocversion 234s r-bioc-biostrings r-bioc-bluster r-bioc-delayedarray 234s r-bioc-delayedmatrixstats r-bioc-deseq2 r-bioc-edger r-bioc-ensembldb 234s r-bioc-experimenthub r-bioc-genomeinfodb r-bioc-genomeinfodbdata 234s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 234s r-bioc-gypsum r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest r-bioc-limma 234s r-bioc-matrixgenerics r-bioc-metapod r-bioc-protgenerics 234s r-bioc-residualmatrix r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib 234s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 234s r-bioc-s4vectors r-bioc-scaledmatrix r-bioc-scater r-bioc-scran 234s r-bioc-scrnaseq r-bioc-scuttle r-bioc-singlecellexperiment 234s r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-summarizedexperiment 234s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass 234s r-cran-base64enc r-cran-beeswarm r-cran-bh r-cran-biocmanager r-cran-bit 234s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio 234s r-cran-bslib r-cran-cachem r-cran-cairo r-cran-callr r-cran-cli 234s r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark 234s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-desc 234s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-dqrng r-cran-dynamictreecut 234s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock 234s r-cran-fnn r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 234s r-cran-futile.options r-cran-generics r-cran-ggbeeswarm r-cran-ggplot2 234s r-cran-ggrastr r-cran-ggrepel r-cran-glue r-cran-gridextra r-cran-gtable 234s r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-httr2 234s r-cran-igraph r-cran-irlba r-cran-isoband r-cran-jquerylib r-cran-jsonlite 234s r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice 234s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-locfit 234s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 234s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl 234s r-cran-pheatmap r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 234s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 234s r-cran-processx r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-ragg 234s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppannoy 234s r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcppml r-cran-rcppprogress 234s r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 234s r-cran-rprojroot r-cran-rspectra r-cran-rsqlite r-cran-rsvd r-cran-rtsne 234s r-cran-sass r-cran-scales r-cran-shiny r-cran-sitmo r-cran-snow 234s r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr r-cran-sys 234s r-cran-systemfonts r-cran-testthat r-cran-textshaping r-cran-tibble 234s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-uwot 234s r-cran-vctrs r-cran-vipor r-cran-viridis r-cran-viridislite r-cran-waldo 234s r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml t1utils 234s tex-common texlive-base texlive-bibtex-extra texlive-binaries 234s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 234s 0 upgraded, 403 newly installed, 0 to remove and 0 not upgraded. 234s Need to get 522 MB of archives. 234s After this operation, 1549 MB of additional disk space will be used. 234s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 235s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 235s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 235s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 235s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 235s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 235s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 235s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 235s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 235s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 236s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 236s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 236s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 236s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 236s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 236s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 236s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 236s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 236s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 236s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 236s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 237s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 237s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 237s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 237s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 237s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 237s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 237s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 237s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 237s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 237s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 237s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 237s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 237s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 237s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 237s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 237s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 237s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 237s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 238s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 238s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 238s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 238s Get:43 http://ftpmaster.internal/ubuntu plucky/universe amd64 hdf5-helpers amd64 1.14.5+repack-3 [17.0 kB] 238s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 238s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 238s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 comerr-dev amd64 2.1-1.47.2-1ubuntu1 [44.9 kB] 238s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libgssrpc4t64 amd64 1.21.3-4ubuntu2 [58.1 kB] 238s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libkadm5clnt-mit12 amd64 1.21.3-4ubuntu2 [41.3 kB] 238s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libkdb5-10t64 amd64 1.21.3-4ubuntu2 [42.0 kB] 238s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libkadm5srv-mit12 amd64 1.21.3-4ubuntu2 [55.5 kB] 238s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 krb5-multidev amd64 1.21.3-4ubuntu2 [125 kB] 238s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 238s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-3 [13.5 kB] 238s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd3 amd64 1:7.8.3+dfsg-3 [31.0 kB] 238s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 238s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 238s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 238s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 238s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 238s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB] 238s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB] 238s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB] 238s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 238s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli-dev amd64 1.1.0-2build4 [381 kB] 238s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 238s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 238s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 238s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 238s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 238s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 238s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-3 [19.5 kB] 238s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libidn2-dev amd64 2.3.7-2build2 [120 kB] 238s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libkrb5-dev amd64 1.21.3-4ubuntu2 [11.9 kB] 238s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libldap-dev amd64 2.6.9+dfsg-1~exp2ubuntu1 [335 kB] 238s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 238s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 238s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 238s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libnghttp2-dev amd64 1.64.0-1 [123 kB] 238s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libpsl-dev amd64 0.21.2-1.1build1 [76.4 kB] 238s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3ubuntu1 [10.0 kB] 238s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3ubuntu1 [341 kB] 238s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10 [144 kB] 238s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libunbound8 amd64 1.22.0-1ubuntu1 [519 kB] 238s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-dane0t64 amd64 3.8.9-2ubuntu2 [24.4 kB] 238s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2ubuntu2 [24.6 kB] 238s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libp11-kit-dev amd64 0.25.5-2ubuntu3 [23.5 kB] 238s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libtasn1-6-dev amd64 4.20.0-2 [98.1 kB] 238s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 nettle-dev amd64 3.10.1-1 [1187 kB] 238s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls28-dev amd64 3.8.9-2ubuntu2 [1118 kB] 238s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 238s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2build7 [66.7 kB] 238s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libssl-dev amd64 3.4.1-1ubuntu1 [2873 kB] 238s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libssh2-1-dev amd64 1.11.1-1 [292 kB] 238s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [444 kB] 238s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4-openssl-dev amd64 8.12.1-3ubuntu1 [522 kB] 238s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 238s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 238s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 238s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libltdl7 amd64 2.5.4-4 [46.5 kB] 238s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 libglpk40 amd64 5.0-1build2 [369 kB] 238s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 239s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 239s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 239s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 239s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-cpp-310 amd64 1.14.5+repack-3 [129 kB] 239s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-fortran-310 amd64 1.14.5+repack-3 [108 kB] 239s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 239s Get:108 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-3 [32.4 kB] 239s Get:109 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-3 [11.7 kB] 239s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 239s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 239s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 239s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 239s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 239s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec-dev amd64 1.1.3-1 [19.8 kB] 239s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-dev amd64 1.14.5+repack-3 [3505 kB] 239s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhnswlib-dev all 0.8.0-1build3 [24.4 kB] 239s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 239s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 239s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 240s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 240s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 240s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 240s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 240s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 240s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 240s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 240s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 240s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 240s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 240s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 240s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 240s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 240s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 240s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 240s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB] 240s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 240s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 240s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 240s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 240s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 240s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 240s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 240s Get:144 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 240s Get:145 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 240s Get:146 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 240s Get:147 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 240s Get:148 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 240s Get:149 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 240s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpcg-cpp-dev all 0.98.1-2 [21.4 kB] 240s Get:151 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 240s Get:152 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 240s Get:153 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 240s Get:154 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 240s Get:155 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 240s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 240s Get:157 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB] 240s Get:158 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 240s Get:159 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 240s Get:160 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 240s Get:161 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB] 240s Get:162 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 240s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 240s Get:164 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB] 240s Get:165 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 240s Get:166 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 240s Get:167 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 241s Get:168 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 241s Get:169 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 241s Get:170 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 241s Get:171 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 241s Get:172 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 241s Get:173 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 241s Get:174 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 241s Get:175 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 241s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 241s Get:177 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 241s Get:178 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 241s Get:179 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 241s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 241s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 241s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 241s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 241s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 241s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 241s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 241s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 242s Get:188 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 242s Get:189 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 242s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 242s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 242s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 242s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-alabaster.schemas all 1.6.0+ds-2 [24.9 kB] 242s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 242s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5lib amd64 1.28.0+dfsg-2build1 [97.4 kB] 242s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5filters amd64 1.18.0+dfsg-2 [137 kB] 242s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5 amd64 2.50.2+dfsg-1build1 [822 kB] 242s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 242s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 242s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 242s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-alabaster.base amd64 1.6.1+ds-2build1 [800 kB] 242s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 243s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 243s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 243s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 243s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 243s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 243s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 243s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 243s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 243s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 243s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1392 kB] 243s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 243s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-hdf5array amd64 1.34.0-2build1 [8792 kB] 244s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-alabaster.matrix amd64 1.6.1+ds-2 [443 kB] 244s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 244s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 244s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 244s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 244s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 244s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 244s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 244s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 244s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 244s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 244s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 244s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-alabaster.ranges all 1.6.0+ds-2 [100 kB] 244s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 245s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 245s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-singlecellexperiment all 1.28.1+ds-2 [829 kB] 245s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-alabaster.se all 1.6.0+ds-2 [87.0 kB] 245s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-alabaster.sce all 1.6.0+ds-2 [83.6 kB] 245s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 245s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 245s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB] 245s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 245s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 245s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 245s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 245s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 245s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 245s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 245s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 245s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 245s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 245s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 245s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 245s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 245s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 245s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 245s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 245s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 245s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 245s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationfilter all 1.30.0+dfsg-2 [247 kB] 245s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 245s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 246s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 246s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 246s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 246s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 246s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 246s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 246s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 246s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 246s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 246s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 246s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 246s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbplyr all 2.5.0+dfsg-1 [1233 kB] 246s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 246s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 246s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 246s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 246s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 246s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 246s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationhub all 3.14.0+dfsg-2 [447 kB] 246s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-assorthead all 1.0.1+ds-2 [194 kB] 246s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-beachmat amd64 2.22.0+ds-2 [976 kB] 246s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 246s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocneighbors amd64 2.0.1+ds-2 [446 kB] 246s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 246s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 246s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 246s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 246s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 246s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 246s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 246s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 246s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-scaledmatrix all 1.14.0+dfsg-2 [324 kB] 246s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-irlba amd64 2.3.5.1-4 [295 kB] 246s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsvd all 1.0.5-1 [3589 kB] 246s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocsingular amd64 1.22.0+ds-2 [357 kB] 246s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 246s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 246s Get:294 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 246s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 246s Get:296 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 246s Get:297 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 246s Get:298 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 246s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 246s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 246s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 246s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 246s Get:303 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 247s Get:304 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 247s Get:305 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 247s Get:306 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 247s Get:307 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 247s Get:308 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 247s Get:309 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 247s Get:310 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 247s Get:311 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 247s Get:312 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 247s Get:313 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 247s Get:314 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 247s Get:315 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 247s Get:316 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 247s Get:317 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB] 247s Get:318 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 247s Get:319 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB] 248s Get:320 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB] 248s Get:321 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB] 248s Get:322 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 250s Get:323 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 250s Get:324 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cluster amd64 2.1.8.1-1 [579 kB] 250s Get:325 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-igraph amd64 2.1.4-1 [5357 kB] 250s Get:326 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-bluster amd64 1.16.0+dfsg-2 [545 kB] 250s Get:327 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsematrixstats amd64 1.18.0+dfsg-2 [877 kB] 250s Get:328 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedmatrixstats all 1.28.1+ds-1 [502 kB] 250s Get:329 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-locfit amd64 1.5-9.12-1 [552 kB] 250s Get:330 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 250s Get:331 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 250s Get:332 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 250s Get:333 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB] 251s Get:334 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 251s Get:335 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 251s Get:336 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 251s Get:337 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 251s Get:338 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 251s Get:339 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 251s Get:340 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 251s Get:341 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 251s Get:342 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 251s Get:343 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpparmadillo amd64 14.2.3-1-1 [864 kB] 251s Get:344 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-deseq2 amd64 1.46.0+dfsg-2 [1250 kB] 251s Get:345 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 251s Get:346 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB] 251s Get:347 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-edger amd64 4.4.2+dfsg-1 [1120 kB] 251s Get:348 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 251s Get:349 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB] 251s Get:350 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 251s Get:351 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 251s Get:352 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 251s Get:353 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 251s Get:354 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 251s Get:355 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 251s Get:356 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB] 251s Get:357 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 251s Get:358 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-protgenerics all 1.38.0-2 [239 kB] 251s Get:359 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ensembldb all 2.30.0+dfsg-3 [1520 kB] 251s Get:360 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-experimenthub all 2.14.0+ds-2 [84.6 kB] 251s Get:361 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr2 all 1.1.1-1 [752 kB] 251s Get:362 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-gypsum all 1.2.0+ds-2 [212 kB] 251s Get:363 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-metapod amd64 1.14.0+dfsg-2 [233 kB] 251s Get:364 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-residualmatrix all 1.16.0+dfsg-2 [317 kB] 251s Get:365 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-scuttle amd64 1.16.0+dfsg-3 [459 kB] 251s Get:366 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-beeswarm amd64 0.4.0-1 [82.3 kB] 251s Get:367 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vipor all 0.4.7-1 [4624 kB] 252s Get:368 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggbeeswarm all 0.7.2-1 [1732 kB] 252s Get:369 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 252s Get:370 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 252s Get:371 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rtsne amd64 0.17-1 [109 kB] 252s Get:372 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 252s Get:373 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppml amd64 0.3.7-2 [180 kB] 252s Get:374 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 252s Get:375 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppannoy amd64 0.0.22-1 [235 kB] 252s Get:376 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rspectra amd64 0.16-2-1 [448 kB] 252s Get:377 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sitmo amd64 2.0.2-1 [130 kB] 252s Get:378 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dqrng amd64 0.3.2+dfsg-1 [161 kB] 252s Get:379 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppprogress all 0.4.2-2build1 [22.0 kB] 252s Get:380 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-uwot amd64 0.2.3-1 [1080 kB] 252s Get:381 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pheatmap all 1.0.12-2build1 [78.2 kB] 252s Get:382 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggrepel amd64 0.9.6-1 [270 kB] 252s Get:383 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cairo amd64 1.6-2-1 [88.8 kB] 252s Get:384 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-systemfonts amd64 1.2.1-1 [347 kB] 252s Get:385 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-textshaping amd64 0.3.7-2 [95.5 kB] 252s Get:386 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ragg amd64 1.3.3-1 [510 kB] 252s Get:387 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggrastr all 1.0.2-1 [2566 kB] 252s Get:388 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-scater all 1.34.1+ds-1 [472 kB] 252s Get:389 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-scran amd64 1.34.0+dfsg-3 [1033 kB] 252s Get:390 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-scrnaseq all 2.20.0+ds-2 [309 kB] 252s Get:391 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 252s Get:392 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 252s Get:393 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 252s Get:394 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 252s Get:395 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 252s Get:396 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 252s Get:397 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dynamictreecut all 1.63-1-3build1 [91.4 kB] 252s Get:398 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 252s Get:399 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] 252s Get:400 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 252s Get:401 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 252s Get:402 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-2 [150 kB] 252s Get:403 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 253s Preconfiguring packages ... 253s Fetched 522 MB in 18s (28.9 MB/s) 253s Selecting previously unselected package libisl23:amd64. 253s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 253s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 253s Unpacking libisl23:amd64 (0.27-1) ... 253s Selecting previously unselected package libmpc3:amd64. 253s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 253s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 253s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 253s Preparing to unpack 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257s Selecting previously unselected package libamd3:amd64. 257s Preparing to unpack .../053-libamd3_1%3a7.8.3+dfsg-3_amd64.deb ... 257s Unpacking libamd3:amd64 (1:7.8.3+dfsg-3) ... 257s Selecting previously unselected package libio-string-perl. 257s Preparing to unpack .../054-libio-string-perl_1.08-4_all.deb ... 257s Unpacking libio-string-perl (1.08-4) ... 257s Selecting previously unselected package liblatex-tounicode-perl. 257s Preparing to unpack .../055-liblatex-tounicode-perl_0.55-1_all.deb ... 257s Unpacking liblatex-tounicode-perl (0.55-1) ... 257s Selecting previously unselected package libbibtex-parser-perl. 257s Preparing to unpack .../056-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 257s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 257s Selecting previously unselected package libblas3:amd64. 257s Preparing to unpack .../057-libblas3_3.12.1-2_amd64.deb ... 257s Unpacking libblas3:amd64 (3.12.1-2) ... 257s Selecting previously unselected package libblas-dev:amd64. 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... 260s Selecting previously unselected package libpkgconf3:amd64. 260s Preparing to unpack .../074-libpkgconf3_1.8.1-4_amd64.deb ... 260s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 260s Selecting previously unselected package pkgconf-bin. 260s Preparing to unpack .../075-pkgconf-bin_1.8.1-4_amd64.deb ... 260s Unpacking pkgconf-bin (1.8.1-4) ... 260s Selecting previously unselected package pkgconf:amd64. 260s Preparing to unpack .../076-pkgconf_1.8.1-4_amd64.deb ... 260s Unpacking pkgconf:amd64 (1.8.1-4) ... 260s Selecting previously unselected package libnghttp2-dev:amd64. 260s Preparing to unpack .../077-libnghttp2-dev_1.64.0-1_amd64.deb ... 260s Unpacking libnghttp2-dev:amd64 (1.64.0-1) ... 260s Selecting previously unselected package libpsl-dev:amd64. 260s Preparing to unpack .../078-libpsl-dev_0.21.2-1.1build1_amd64.deb ... 260s Unpacking libpsl-dev:amd64 (0.21.2-1.1build1) ... 260s Selecting previously unselected package libgmpxx4ldbl:amd64. 260s Preparing to unpack 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libgnutls-openssl27t64:amd64. 260s Preparing to unpack .../084-libgnutls-openssl27t64_3.8.9-2ubuntu2_amd64.deb ... 260s Unpacking libgnutls-openssl27t64:amd64 (3.8.9-2ubuntu2) ... 260s Selecting previously unselected package libp11-kit-dev:amd64. 260s Preparing to unpack .../085-libp11-kit-dev_0.25.5-2ubuntu3_amd64.deb ... 260s Unpacking libp11-kit-dev:amd64 (0.25.5-2ubuntu3) ... 260s Selecting previously unselected package libtasn1-6-dev:amd64. 260s Preparing to unpack .../086-libtasn1-6-dev_4.20.0-2_amd64.deb ... 260s Unpacking libtasn1-6-dev:amd64 (4.20.0-2) ... 260s Selecting previously unselected package nettle-dev:amd64. 260s Preparing to unpack .../087-nettle-dev_3.10.1-1_amd64.deb ... 260s Unpacking nettle-dev:amd64 (3.10.1-1) ... 260s Selecting previously unselected package libgnutls28-dev:amd64. 260s Preparing to unpack .../088-libgnutls28-dev_3.8.9-2ubuntu2_amd64.deb ... 260s Unpacking libgnutls28-dev:amd64 (3.8.9-2ubuntu2) ... 260s Selecting previously unselected package 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unselected package libcurl4-openssl-dev:amd64. 261s Preparing to unpack .../094-libcurl4-openssl-dev_8.12.1-3ubuntu1_amd64.deb ... 261s Unpacking libcurl4-openssl-dev:amd64 (8.12.1-3ubuntu1) ... 261s Selecting previously unselected package libdatrie1:amd64. 261s Preparing to unpack .../095-libdatrie1_0.2.13-3build1_amd64.deb ... 261s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 261s Selecting previously unselected package libdeflate0:amd64. 261s Preparing to unpack .../096-libdeflate0_1.23-1_amd64.deb ... 261s Unpacking libdeflate0:amd64 (1.23-1) ... 261s Selecting previously unselected package libdeflate-dev:amd64. 261s Preparing to unpack .../097-libdeflate-dev_1.23-1_amd64.deb ... 261s Unpacking libdeflate-dev:amd64 (1.23-1) ... 261s Selecting previously unselected package libltdl7:amd64. 261s Preparing to unpack .../098-libltdl7_2.5.4-4_amd64.deb ... 261s Unpacking libltdl7:amd64 (2.5.4-4) ... 261s Selecting previously unselected package libglpk40:amd64. 261s Preparing to unpack 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libhdf5-cpp-310:amd64 (1.14.5+repack-3) ... 261s Selecting previously unselected package libhdf5-fortran-310:amd64. 261s Preparing to unpack .../105-libhdf5-fortran-310_1.14.5+repack-3_amd64.deb ... 261s Unpacking libhdf5-fortran-310:amd64 (1.14.5+repack-3) ... 261s Selecting previously unselected package libhdf5-hl-310:amd64. 261s Preparing to unpack .../106-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ... 261s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 261s Selecting previously unselected package libhdf5-hl-fortran-310:amd64. 261s Preparing to unpack .../107-libhdf5-hl-fortran-310_1.14.5+repack-3_amd64.deb ... 261s Unpacking libhdf5-hl-fortran-310:amd64 (1.14.5+repack-3) ... 261s Selecting previously unselected package libhdf5-hl-cpp-310:amd64. 261s Preparing to unpack .../108-libhdf5-hl-cpp-310_1.14.5+repack-3_amd64.deb ... 261s Unpacking libhdf5-hl-cpp-310:amd64 (1.14.5+repack-3) ... 261s Selecting previously unselected package libjpeg-turbo8:amd64. 261s Preparing to unpack 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unpack .../130-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 263s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 263s Selecting previously unselected package libjs-jquery-ui. 263s Preparing to unpack .../131-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 263s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 263s Selecting previously unselected package libjs-json. 263s Preparing to unpack .../132-libjs-json_0~20221030+~1.0.8-1_all.deb ... 263s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 263s Selecting previously unselected package libjs-lunr. 263s Preparing to unpack .../133-libjs-lunr_2.3.9~dfsg-2_all.deb ... 263s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 263s Selecting previously unselected package libjs-prettify. 263s Preparing to unpack .../134-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 263s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 263s Selecting previously unselected package libkpathsea6:amd64. 263s Preparing to unpack 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libmpfi0:amd64 (1.5.4+ds-4) ... 263s Selecting previously unselected package libncurses-dev:amd64. 263s Preparing to unpack .../141-libncurses-dev_6.5+20250216-2_amd64.deb ... 263s Unpacking libncurses-dev:amd64 (6.5+20250216-2) ... 263s Selecting previously unselected package libthai-data. 263s Preparing to unpack .../142-libthai-data_0.1.29-2build1_all.deb ... 263s Unpacking libthai-data (0.1.29-2build1) ... 263s Selecting previously unselected package libthai0:amd64. 263s Preparing to unpack .../143-libthai0_0.1.29-2build1_amd64.deb ... 263s Unpacking libthai0:amd64 (0.1.29-2build1) ... 263s Selecting previously unselected package libpango-1.0-0:amd64. 263s Preparing to unpack .../144-libpango-1.0-0_1.56.2-1_amd64.deb ... 263s Unpacking libpango-1.0-0:amd64 (1.56.2-1) ... 263s Selecting previously unselected package libpangoft2-1.0-0:amd64. 263s Preparing to unpack .../145-libpangoft2-1.0-0_1.56.2-1_amd64.deb ... 263s Unpacking libpangoft2-1.0-0:amd64 (1.56.2-1) ... 263s Selecting previously unselected package libpangocairo-1.0-0:amd64. 263s Preparing to unpack .../146-libpangocairo-1.0-0_1.56.2-1_amd64.deb ... 263s Unpacking libpangocairo-1.0-0:amd64 (1.56.2-1) ... 263s Selecting previously unselected package libpaper2:amd64. 263s Preparing to unpack .../147-libpaper2_2.2.5-0.3_amd64.deb ... 263s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 263s Selecting previously unselected package libpaper-utils. 263s Preparing to unpack .../148-libpaper-utils_2.2.5-0.3_amd64.deb ... 263s Unpacking libpaper-utils (2.2.5-0.3) ... 263s Selecting previously unselected package libpcg-cpp-dev. 263s Preparing to unpack .../149-libpcg-cpp-dev_0.98.1-2_all.deb ... 263s Unpacking libpcg-cpp-dev (0.98.1-2) ... 263s Selecting previously unselected package libpcre2-16-0:amd64. 263s Preparing to unpack .../150-libpcre2-16-0_10.45-1_amd64.deb ... 263s Unpacking libpcre2-16-0:amd64 (10.45-1) ... 264s Selecting previously unselected package libpcre2-32-0:amd64. 264s Preparing to unpack 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libptexenc1:amd64 (2024.20240313.70630+ds-6) ... 264s Selecting previously unselected package libreadline-dev:amd64. 264s Preparing to unpack .../157-libreadline-dev_8.2-6_amd64.deb ... 264s Unpacking libreadline-dev:amd64 (8.2-6) ... 264s Selecting previously unselected package libsharpyuv0:amd64. 264s Preparing to unpack .../158-libsharpyuv0_1.5.0-0.1_amd64.deb ... 264s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 264s Selecting previously unselected package libsm6:amd64. 264s Preparing to unpack .../159-libsm6_2%3a1.2.4-1_amd64.deb ... 264s Unpacking libsm6:amd64 (2:1.2.4-1) ... 264s Selecting previously unselected package libsynctex2:amd64. 264s Preparing to unpack .../160-libsynctex2_2024.20240313.70630+ds-6_amd64.deb ... 264s Unpacking libsynctex2:amd64 (2024.20240313.70630+ds-6) ... 264s Selecting previously unselected package libtcl8.6:amd64. 264s Preparing to unpack .../161-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 264s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 264s Selecting previously unselected package libteckit0:amd64. 264s Preparing to unpack .../162-libteckit0_2.5.12+ds1-1_amd64.deb ... 264s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 264s Selecting previously unselected package libtexlua53-5:amd64. 264s Preparing to unpack .../163-libtexlua53-5_2024.20240313.70630+ds-6_amd64.deb ... 264s Unpacking libtexlua53-5:amd64 (2024.20240313.70630+ds-6) ... 264s Selecting previously unselected package libjbig0:amd64. 264s Preparing to unpack .../164-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 264s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 264s Selecting previously unselected package libwebp7:amd64. 264s Preparing to unpack .../165-libwebp7_1.5.0-0.1_amd64.deb ... 264s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 264s Selecting previously unselected package libtiff6:amd64. 264s Preparing to unpack .../166-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 264s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 264s Selecting previously unselected package libxft2:amd64. 264s Preparing to unpack .../167-libxft2_2.3.6-1build1_amd64.deb ... 264s Unpacking libxft2:amd64 (2.3.6-1build1) ... 264s Selecting previously unselected package libxss1:amd64. 264s Preparing to unpack .../168-libxss1_1%3a1.2.3-1build3_amd64.deb ... 264s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 264s Selecting previously unselected package libtk8.6:amd64. 264s Preparing to unpack .../169-libtk8.6_8.6.16-1_amd64.deb ... 264s Unpacking libtk8.6:amd64 (8.6.16-1) ... 264s Selecting previously unselected package libxt6t64:amd64. 264s Preparing to unpack .../170-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 264s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 264s Selecting previously unselected package libxmu6:amd64. 264s Preparing to unpack .../171-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 264s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 264s Selecting previously unselected package libxpm4:amd64. 264s Preparing to unpack .../172-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 264s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 264s Selecting previously unselected package libxaw7:amd64. 264s Preparing to unpack .../173-libxaw7_2%3a1.0.16-1_amd64.deb ... 264s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 264s Selecting previously unselected package libxi6:amd64. 264s Preparing to unpack .../174-libxi6_2%3a1.8.2-1_amd64.deb ... 264s Unpacking libxi6:amd64 (2:1.8.2-1) ... 264s Selecting previously unselected package libzzip-0-13t64:amd64. 264s Preparing to unpack .../175-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 264s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 265s Selecting previously unselected package zip. 265s Preparing to unpack .../176-zip_3.0-14ubuntu2_amd64.deb ... 265s Unpacking zip (3.0-14ubuntu2) ... 265s Selecting previously unselected package unzip. 265s Preparing to unpack .../177-unzip_6.0-28ubuntu6_amd64.deb ... 265s Unpacking unzip (6.0-28ubuntu6) ... 265s Selecting previously unselected package xdg-utils. 265s Preparing to unpack .../178-xdg-utils_1.2.1-2ubuntu1_all.deb ... 265s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 265s Selecting previously unselected package r-base-core. 265s Preparing to unpack .../179-r-base-core_4.4.3-1_amd64.deb ... 265s Unpacking r-base-core (4.4.3-1) ... 265s Selecting previously unselected package r-cran-littler. 265s Preparing to unpack .../180-r-cran-littler_0.3.20-2_amd64.deb ... 265s Unpacking r-cran-littler (0.3.20-2) ... 265s Selecting previously unselected package littler. 265s Preparing to unpack .../181-littler_0.3.20-2_all.deb ... 265s Unpacking littler (0.3.20-2) ... 265s Selecting previously unselected package node-bootstrap-sass. 265s Preparing to unpack .../182-node-bootstrap-sass_3.4.3-2_all.deb ... 265s Unpacking node-bootstrap-sass (3.4.3-2) ... 265s Selecting previously unselected package node-html5shiv. 265s Preparing to unpack .../183-node-html5shiv_3.7.3+dfsg-5_all.deb ... 265s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 265s Selecting previously unselected package node-normalize.css. 265s Preparing to unpack .../184-node-normalize.css_8.0.1-5_all.deb ... 265s Unpacking node-normalize.css (8.0.1-5) ... 265s Selecting previously unselected package pandoc-data. 265s Preparing to unpack .../185-pandoc-data_3.1.11.1-3build1_all.deb ... 265s Unpacking pandoc-data (3.1.11.1-3build1) ... 265s Selecting previously unselected package pandoc. 265s Preparing to unpack .../186-pandoc_3.1.11.1+ds-2_amd64.deb ... 265s Unpacking pandoc (3.1.11.1+ds-2) ... 266s Selecting previously unselected package liblzma-dev:amd64. 266s Preparing to unpack .../187-liblzma-dev_5.6.4-1_amd64.deb ... 266s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 266s Selecting previously unselected package libtirpc-dev:amd64. 266s Preparing to unpack .../188-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 266s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 266s Selecting previously unselected package r-base-dev. 266s Preparing to unpack .../189-r-base-dev_4.4.3-1_all.deb ... 266s Unpacking r-base-dev (4.4.3-1) ... 266s Selecting previously unselected package pkg-r-autopkgtest. 266s Preparing to unpack .../190-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 266s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 266s Selecting previously unselected package r-bioc-biocgenerics. 266s Preparing to unpack .../191-r-bioc-biocgenerics_0.52.0-2_all.deb ... 266s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 266s Selecting previously unselected package r-bioc-alabaster.schemas. 266s Preparing to unpack .../192-r-bioc-alabaster.schemas_1.6.0+ds-2_all.deb ... 266s Unpacking r-bioc-alabaster.schemas (1.6.0+ds-2) ... 266s Selecting previously unselected package r-bioc-s4vectors. 266s Preparing to unpack .../193-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 266s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 266s Selecting previously unselected package r-bioc-rhdf5lib. 266s Preparing to unpack .../194-r-bioc-rhdf5lib_1.28.0+dfsg-2build1_amd64.deb ... 266s Unpacking r-bioc-rhdf5lib (1.28.0+dfsg-2build1) ... 266s Selecting previously unselected package r-bioc-rhdf5filters. 266s Preparing to unpack .../195-r-bioc-rhdf5filters_1.18.0+dfsg-2_amd64.deb ... 266s Unpacking r-bioc-rhdf5filters (1.18.0+dfsg-2) ... 266s Selecting previously unselected package r-bioc-rhdf5. 266s Preparing to unpack .../196-r-bioc-rhdf5_2.50.2+dfsg-1build1_amd64.deb ... 266s Unpacking r-bioc-rhdf5 (2.50.2+dfsg-1build1) ... 266s Selecting previously unselected package r-cran-jsonlite. 266s Preparing to unpack .../197-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 266s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 266s Selecting previously unselected package r-cran-pkgkitten. 266s Preparing to unpack .../198-r-cran-pkgkitten_0.2.4-1_all.deb ... 266s Unpacking r-cran-pkgkitten (0.2.4-1) ... 266s Selecting previously unselected package r-cran-rcpp. 266s Preparing to unpack .../199-r-cran-rcpp_1.0.14-1_amd64.deb ... 266s Unpacking r-cran-rcpp (1.0.14-1) ... 267s Selecting previously unselected package r-bioc-alabaster.base. 267s Preparing to unpack .../200-r-bioc-alabaster.base_1.6.1+ds-2build1_amd64.deb ... 267s Unpacking r-bioc-alabaster.base (1.6.1+ds-2build1) ... 267s Selecting previously unselected package r-cran-lattice. 267s Preparing to unpack .../201-r-cran-lattice_0.22-6-1_amd64.deb ... 267s Unpacking r-cran-lattice (0.22-6-1) ... 267s Selecting previously unselected package r-cran-matrix. 267s Preparing to unpack .../202-r-cran-matrix_1.7-3-1_amd64.deb ... 267s Unpacking r-cran-matrix (1.7-3-1) ... 267s Selecting previously unselected package r-cran-matrixstats. 267s Preparing to unpack .../203-r-cran-matrixstats_1.5.0-1_amd64.deb ... 267s Unpacking r-cran-matrixstats (1.5.0-1) ... 267s Selecting previously unselected package r-bioc-matrixgenerics. 267s Preparing to unpack .../204-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 267s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 267s Selecting previously unselected package r-bioc-iranges. 267s Preparing to unpack .../205-r-bioc-iranges_2.40.1-2_amd64.deb ... 267s Unpacking r-bioc-iranges (2.40.1-2) ... 267s Selecting previously unselected package r-cran-abind. 267s Preparing to unpack .../206-r-cran-abind_1.4-8-1_all.deb ... 267s Unpacking r-cran-abind (1.4-8-1) ... 267s Selecting previously unselected package r-cran-crayon. 267s Preparing to unpack .../207-r-cran-crayon_1.5.3-1_all.deb ... 267s Unpacking r-cran-crayon (1.5.3-1) ... 267s Selecting previously unselected package r-bioc-s4arrays. 267s Preparing to unpack .../208-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 267s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 267s Selecting previously unselected package r-bioc-zlibbioc. 267s Preparing to unpack .../209-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 267s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 267s Selecting previously unselected package r-bioc-xvector. 267s Preparing to unpack .../210-r-bioc-xvector_0.46.0-2_amd64.deb ... 267s Unpacking r-bioc-xvector (0.46.0-2) ... 267s Selecting previously unselected package r-bioc-sparsearray. 267s Preparing to unpack .../211-r-bioc-sparsearray_1.6.2+dfsg-1_amd64.deb ... 267s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 267s Selecting previously unselected package r-bioc-delayedarray. 267s Preparing to unpack .../212-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 267s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 267s Selecting previously unselected package r-bioc-hdf5array. 267s Preparing to unpack .../213-r-bioc-hdf5array_1.34.0-2build1_amd64.deb ... 267s Unpacking r-bioc-hdf5array (1.34.0-2build1) ... 267s Selecting previously unselected package r-bioc-alabaster.matrix. 267s Preparing to unpack .../214-r-bioc-alabaster.matrix_1.6.1+ds-2_amd64.deb ... 267s Unpacking r-bioc-alabaster.matrix (1.6.1+ds-2) ... 267s Selecting previously unselected package r-cran-curl. 267s Preparing to unpack .../215-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 267s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 267s Selecting previously unselected package r-cran-mime. 267s Preparing to unpack .../216-r-cran-mime_0.12-2_amd64.deb ... 267s Unpacking r-cran-mime (0.12-2) ... 267s Selecting previously unselected package r-cran-sys. 267s Preparing to unpack .../217-r-cran-sys_3.4.3-1_amd64.deb ... 267s Unpacking r-cran-sys (3.4.3-1) ... 268s Selecting previously unselected package r-cran-askpass. 268s Preparing to unpack .../218-r-cran-askpass_1.2.1-1_amd64.deb ... 268s Unpacking r-cran-askpass (1.2.1-1) ... 268s Selecting previously unselected package r-cran-openssl. 268s Preparing to unpack .../219-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 268s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 268s Selecting previously unselected package r-cran-r6. 268s Preparing to unpack .../220-r-cran-r6_2.6.1-1_all.deb ... 268s Unpacking r-cran-r6 (2.6.1-1) ... 268s Selecting previously unselected package r-cran-httr. 268s Preparing to unpack .../221-r-cran-httr_1.4.7+dfsg-1_all.deb ... 268s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 268s Selecting previously unselected package r-bioc-ucsc.utils. 268s Preparing to unpack .../222-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 268s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 268s Selecting previously unselected package r-bioc-genomeinfodbdata. 268s Preparing to unpack .../223-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 268s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 268s Selecting previously unselected package r-bioc-genomeinfodb. 268s Preparing to unpack .../224-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 268s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 268s Selecting previously unselected package r-bioc-genomicranges. 268s Preparing to unpack .../225-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 268s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 268s Selecting previously unselected package r-bioc-alabaster.ranges. 268s Preparing to unpack .../226-r-bioc-alabaster.ranges_1.6.0+ds-2_all.deb ... 268s Unpacking r-bioc-alabaster.ranges (1.6.0+ds-2) ... 268s Selecting previously unselected package r-bioc-biobase. 268s Preparing to unpack .../227-r-bioc-biobase_2.66.0-2_amd64.deb ... 268s Unpacking r-bioc-biobase (2.66.0-2) ... 268s Selecting previously unselected package r-bioc-summarizedexperiment. 268s Preparing to unpack .../228-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 268s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 268s Selecting previously unselected package r-bioc-singlecellexperiment. 268s Preparing to unpack .../229-r-bioc-singlecellexperiment_1.28.1+ds-2_all.deb ... 268s Unpacking r-bioc-singlecellexperiment (1.28.1+ds-2) ... 268s Selecting previously unselected package r-bioc-alabaster.se. 268s Preparing to unpack .../230-r-bioc-alabaster.se_1.6.0+ds-2_all.deb ... 268s Unpacking r-bioc-alabaster.se (1.6.0+ds-2) ... 268s Selecting previously unselected package r-bioc-alabaster.sce. 268s Preparing to unpack .../231-r-bioc-alabaster.sce_1.6.0+ds-2_all.deb ... 268s Unpacking r-bioc-alabaster.sce (1.6.0+ds-2) ... 268s Selecting previously unselected package r-cran-dbi. 268s Preparing to unpack .../232-r-cran-dbi_1.2.3-1_all.deb ... 268s Unpacking r-cran-dbi (1.2.3-1) ... 268s Selecting previously unselected package r-cran-bit. 268s Preparing to unpack .../233-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 268s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 268s Selecting previously unselected package r-cran-bit64. 268s Preparing to unpack .../234-r-cran-bit64_4.6.0-1-1ubuntu2_amd64.deb ... 268s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 268s Selecting previously unselected package r-cran-rlang. 268s Preparing to unpack .../235-r-cran-rlang_1.1.5-1_amd64.deb ... 268s Unpacking r-cran-rlang (1.1.5-1) ... 268s Selecting previously unselected package r-cran-cli. 268s Preparing to unpack .../236-r-cran-cli_3.6.4-1_amd64.deb ... 268s Unpacking r-cran-cli (3.6.4-1) ... 268s Selecting previously unselected package r-cran-glue. 269s Preparing to unpack .../237-r-cran-glue_1.8.0-1_amd64.deb ... 269s Unpacking r-cran-glue (1.8.0-1) ... 269s Selecting previously unselected package r-cran-lifecycle. 269s Preparing to unpack .../238-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 269s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 269s Selecting previously unselected package r-cran-vctrs. 269s Preparing to unpack .../239-r-cran-vctrs_0.6.5-1_amd64.deb ... 269s Unpacking r-cran-vctrs (0.6.5-1) ... 269s Selecting previously unselected package r-cran-blob. 269s Preparing to unpack .../240-r-cran-blob_1.2.4-1_all.deb ... 269s Unpacking r-cran-blob (1.2.4-1) ... 269s Selecting previously unselected package r-cran-fastmap. 269s Preparing to unpack .../241-r-cran-fastmap_1.2.0-1_amd64.deb ... 269s Unpacking r-cran-fastmap (1.2.0-1) ... 269s Selecting previously unselected package r-cran-cachem. 269s Preparing to unpack .../242-r-cran-cachem_1.1.0-1_amd64.deb ... 269s Unpacking r-cran-cachem (1.1.0-1) ... 269s Selecting previously unselected package r-cran-memoise. 269s Preparing to unpack .../243-r-cran-memoise_2.0.1-1_all.deb ... 269s Unpacking r-cran-memoise (2.0.1-1) ... 269s Selecting previously unselected package r-cran-pkgconfig. 269s Preparing to unpack .../244-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 269s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 269s Selecting previously unselected package r-cran-plogr. 269s Preparing to unpack .../245-r-cran-plogr_0.2.0-3build1_all.deb ... 269s Unpacking r-cran-plogr (0.2.0-3build1) ... 269s Selecting previously unselected package r-cran-cpp11. 269s Preparing to unpack .../246-r-cran-cpp11_0.5.2-1_all.deb ... 269s Unpacking r-cran-cpp11 (0.5.2-1) ... 269s Selecting previously unselected package r-cran-rsqlite. 269s Preparing to unpack .../247-r-cran-rsqlite_2.3.9-1_amd64.deb ... 269s Unpacking r-cran-rsqlite (2.3.9-1) ... 269s Selecting previously unselected package r-cran-png. 269s Preparing to unpack .../248-r-cran-png_0.1-8-1build2_amd64.deb ... 269s Unpacking r-cran-png (0.1-8-1build2) ... 269s Selecting previously unselected package r-bioc-biostrings. 269s Preparing to unpack .../249-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 269s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 269s Selecting previously unselected package r-bioc-keggrest. 269s Preparing to unpack .../250-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 269s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 269s Selecting previously unselected package r-bioc-annotationdbi. 269s Preparing to unpack .../251-r-bioc-annotationdbi_1.68.0-2_all.deb ... 269s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 269s Selecting previously unselected package r-cran-lazyeval. 269s Preparing to unpack .../252-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 269s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 269s Selecting previously unselected package r-bioc-annotationfilter. 269s Preparing to unpack .../253-r-bioc-annotationfilter_1.30.0+dfsg-2_all.deb ... 269s Unpacking r-bioc-annotationfilter (1.30.0+dfsg-2) ... 269s Selecting previously unselected package r-cran-generics. 269s Preparing to unpack .../254-r-cran-generics_0.1.3-1_all.deb ... 269s Unpacking r-cran-generics (0.1.3-1) ... 269s Selecting previously unselected package r-cran-magrittr. 269s Preparing to unpack .../255-r-cran-magrittr_2.0.3-1_amd64.deb ... 269s Unpacking r-cran-magrittr (2.0.3-1) ... 269s Selecting previously unselected package r-cran-utf8. 269s Preparing to unpack .../256-r-cran-utf8_1.2.4-1_amd64.deb ... 269s Unpacking r-cran-utf8 (1.2.4-1) ... 269s Selecting previously unselected package r-cran-pillar. 269s Preparing to unpack .../257-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 269s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 270s Selecting previously unselected package r-cran-fansi. 270s Preparing to unpack .../258-r-cran-fansi_1.0.5-1_amd64.deb ... 270s Unpacking r-cran-fansi (1.0.5-1) ... 270s Selecting previously unselected package r-cran-tibble. 270s Preparing to unpack .../259-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 270s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 270s Selecting previously unselected package r-cran-withr. 270s Preparing to unpack .../260-r-cran-withr_3.0.2+dfsg-1_all.deb ... 270s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 270s Selecting previously unselected package r-cran-tidyselect. 270s Preparing to unpack .../261-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 270s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 270s Selecting previously unselected package r-cran-dplyr. 270s Preparing to unpack .../262-r-cran-dplyr_1.1.4-4_amd64.deb ... 270s Unpacking r-cran-dplyr (1.1.4-4) ... 270s Selecting previously unselected package r-cran-purrr. 270s Preparing to unpack .../263-r-cran-purrr_1.0.4-1_amd64.deb ... 270s Unpacking r-cran-purrr (1.0.4-1) ... 270s Selecting previously unselected package r-cran-stringi. 270s Preparing to unpack .../264-r-cran-stringi_1.8.4-1build1_amd64.deb ... 270s Unpacking r-cran-stringi (1.8.4-1build1) ... 270s Selecting previously unselected package r-cran-stringr. 270s Preparing to unpack .../265-r-cran-stringr_1.5.1-1_all.deb ... 270s Unpacking r-cran-stringr (1.5.1-1) ... 270s Selecting previously unselected package r-cran-tidyr. 270s Preparing to unpack .../266-r-cran-tidyr_1.3.1-1_amd64.deb ... 270s Unpacking r-cran-tidyr (1.3.1-1) ... 270s Selecting previously unselected package r-cran-dbplyr. 270s Preparing to unpack .../267-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ... 270s Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ... 270s Selecting previously unselected package r-cran-filelock. 270s Preparing to unpack .../268-r-cran-filelock_1.0.3-1_amd64.deb ... 270s Unpacking r-cran-filelock (1.0.3-1) ... 270s Selecting previously unselected package r-bioc-biocfilecache. 270s Preparing to unpack .../269-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 270s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 270s Selecting previously unselected package r-cran-biocmanager. 270s Preparing to unpack .../270-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 270s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 270s Selecting previously unselected package r-bioc-biocversion. 270s Preparing to unpack .../271-r-bioc-biocversion_3.20.0-2_all.deb ... 270s Unpacking r-bioc-biocversion (3.20.0-2) ... 270s Selecting previously unselected package r-cran-rappdirs. 270s Preparing to unpack .../272-r-cran-rappdirs_0.3.3-1_amd64.deb ... 270s Unpacking r-cran-rappdirs (0.3.3-1) ... 270s Selecting previously unselected package r-cran-yaml. 270s Preparing to unpack .../273-r-cran-yaml_2.3.10-1_amd64.deb ... 270s Unpacking r-cran-yaml (2.3.10-1) ... 270s Selecting previously unselected package r-bioc-annotationhub. 270s Preparing to unpack .../274-r-bioc-annotationhub_3.14.0+dfsg-2_all.deb ... 270s Unpacking r-bioc-annotationhub (3.14.0+dfsg-2) ... 270s Selecting previously unselected package r-bioc-assorthead. 270s Preparing to unpack .../275-r-bioc-assorthead_1.0.1+ds-2_all.deb ... 270s Unpacking r-bioc-assorthead (1.0.1+ds-2) ... 270s Selecting previously unselected package r-bioc-beachmat. 270s Preparing to unpack .../276-r-bioc-beachmat_2.22.0+ds-2_amd64.deb ... 270s Unpacking r-bioc-beachmat (2.22.0+ds-2) ... 270s Selecting previously unselected package r-bioc-biocio. 270s Preparing to unpack .../277-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 270s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 270s Selecting previously unselected package r-bioc-biocneighbors. 270s Preparing to unpack .../278-r-bioc-biocneighbors_2.0.1+ds-2_amd64.deb ... 270s Unpacking r-bioc-biocneighbors (2.0.1+ds-2) ... 271s Selecting previously unselected package r-cran-formatr. 271s Preparing to unpack .../279-r-cran-formatr_1.14-2_all.deb ... 271s Unpacking r-cran-formatr (1.14-2) ... 271s Selecting previously unselected package r-cran-lambda.r. 271s Preparing to unpack .../280-r-cran-lambda.r_1.2.4-2build1_all.deb ... 271s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 271s Selecting previously unselected package r-cran-futile.options. 271s Preparing to unpack .../281-r-cran-futile.options_1.0.1-3build1_all.deb ... 271s Unpacking r-cran-futile.options (1.0.1-3build1) ... 271s Selecting previously unselected package r-cran-futile.logger. 271s Preparing to unpack .../282-r-cran-futile.logger_1.4.3-4build1_all.deb ... 271s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 271s Selecting previously unselected package r-cran-snow. 271s Preparing to unpack .../283-r-cran-snow_1%3a0.4.4-2_all.deb ... 271s Unpacking r-cran-snow (1:0.4.4-2) ... 271s Selecting previously unselected package r-cran-codetools. 271s Preparing to unpack .../284-r-cran-codetools_0.2-20-1_all.deb ... 271s Unpacking r-cran-codetools (0.2-20-1) ... 271s Selecting previously unselected package r-cran-bh. 271s Preparing to unpack .../285-r-cran-bh_1.84.0-1_all.deb ... 271s Unpacking r-cran-bh (1.84.0-1) ... 271s Selecting previously unselected package r-bioc-biocparallel. 271s Preparing to unpack .../286-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 271s Unpacking r-bioc-biocparallel (1.40.0-2) ... 271s Selecting previously unselected package r-bioc-scaledmatrix. 271s Preparing to unpack .../287-r-bioc-scaledmatrix_1.14.0+dfsg-2_all.deb ... 271s Unpacking r-bioc-scaledmatrix (1.14.0+dfsg-2) ... 271s Selecting previously unselected package r-cran-irlba. 271s Preparing to unpack .../288-r-cran-irlba_2.3.5.1-4_amd64.deb ... 271s Unpacking r-cran-irlba (2.3.5.1-4) ... 271s Selecting previously unselected package r-cran-rsvd. 271s Preparing to unpack .../289-r-cran-rsvd_1.0.5-1_all.deb ... 271s Unpacking r-cran-rsvd (1.0.5-1) ... 271s Selecting previously unselected package r-bioc-biocsingular. 271s Preparing to unpack .../290-r-bioc-biocsingular_1.22.0+ds-2_amd64.deb ... 271s Unpacking r-bioc-biocsingular (1.22.0+ds-2) ... 271s Selecting previously unselected package r-cran-base64enc. 271s Preparing to unpack .../291-r-cran-base64enc_0.1-3-3_amd64.deb ... 271s Unpacking r-cran-base64enc (0.1-3-3) ... 271s Selecting previously unselected package r-cran-digest. 271s Preparing to unpack .../292-r-cran-digest_0.6.37-1_amd64.deb ... 271s Unpacking r-cran-digest (0.6.37-1) ... 271s Selecting previously unselected package r-cran-htmltools. 271s Preparing to unpack .../293-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 271s Unpacking r-cran-htmltools (0.5.8.1-1) ... 271s Selecting previously unselected package r-cran-evaluate. 271s Preparing to unpack .../294-r-cran-evaluate_1.0.3-1_all.deb ... 271s Unpacking r-cran-evaluate (1.0.3-1) ... 271s Selecting previously unselected package r-cran-xfun. 271s Preparing to unpack .../295-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 271s Unpacking r-cran-xfun (0.51+dfsg-1) ... 271s Selecting previously unselected package r-cran-highr. 271s Preparing to unpack .../296-r-cran-highr_0.11+dfsg-1_all.deb ... 271s Unpacking r-cran-highr (0.11+dfsg-1) ... 271s Selecting previously unselected package libjs-mathjax. 271s Preparing to unpack .../297-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 271s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 272s Selecting previously unselected package r-cran-knitr. 272s Preparing to unpack .../298-r-cran-knitr_1.49+dfsg-1_all.deb ... 272s Unpacking r-cran-knitr (1.49+dfsg-1) ... 272s Selecting previously unselected package r-cran-jquerylib. 272s Preparing to unpack .../299-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 272s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 272s Selecting previously unselected package r-cran-fs. 272s Preparing to unpack .../300-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 272s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 272s Selecting previously unselected package r-cran-sass. 272s Preparing to unpack .../301-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 272s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 272s Selecting previously unselected package r-cran-bslib. 272s Preparing to unpack .../302-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 272s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 272s Selecting previously unselected package r-cran-fontawesome. 272s Preparing to unpack .../303-r-cran-fontawesome_0.5.3-1_all.deb ... 272s Unpacking r-cran-fontawesome (0.5.3-1) ... 273s Selecting previously unselected package r-cran-tinytex. 273s Preparing to unpack .../304-r-cran-tinytex_0.56-1_all.deb ... 273s Unpacking r-cran-tinytex (0.56-1) ... 273s Selecting previously unselected package libjs-modernizr. 273s Preparing to unpack .../305-libjs-modernizr_3.13.0-0.1_all.deb ... 273s Unpacking libjs-modernizr (3.13.0-0.1) ... 273s Selecting previously unselected package r-cran-later. 273s Preparing to unpack .../306-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 273s Unpacking r-cran-later (1.4.1+dfsg-1) ... 273s Selecting previously unselected package r-cran-promises. 273s Preparing to unpack .../307-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 273s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 273s Selecting previously unselected package r-cran-httpuv. 273s Preparing to unpack .../308-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 273s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 273s Selecting previously unselected package r-cran-xtable. 273s Preparing to unpack .../309-r-cran-xtable_1%3a1.8-4-2_all.deb ... 273s Unpacking r-cran-xtable (1:1.8-4-2) ... 273s Selecting previously unselected package r-cran-sourcetools. 273s Preparing to unpack .../310-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 273s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 273s Selecting previously unselected package r-cran-commonmark. 273s Preparing to unpack .../311-r-cran-commonmark_1.9.2-2_amd64.deb ... 273s Unpacking r-cran-commonmark (1.9.2-2) ... 273s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 273s Preparing to unpack .../312-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 273s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 273s Selecting previously unselected package r-cran-shiny. 273s Preparing to unpack .../313-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 273s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 273s Selecting previously unselected package r-cran-rmarkdown. 273s Preparing to unpack .../314-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 273s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 273s Selecting previously unselected package r-cran-bookdown. 273s Preparing to unpack .../315-r-cran-bookdown_0.42+dfsg-1_all.deb ... 273s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 273s Selecting previously unselected package tex-common. 273s Preparing to unpack .../316-tex-common_6.19_all.deb ... 273s Unpacking tex-common (6.19) ... 273s Selecting previously unselected package t1utils. 273s Preparing to unpack .../317-t1utils_1.41-4build3_amd64.deb ... 273s Unpacking t1utils (1.41-4build3) ... 273s Selecting previously unselected package texlive-binaries. 273s Preparing to unpack .../318-texlive-binaries_2024.20240313.70630+ds-6_amd64.deb ... 273s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ... 274s Selecting previously unselected package texlive-base. 274s Preparing to unpack .../319-texlive-base_2024.20250114-1_all.deb ... 274s Unpacking texlive-base (2024.20250114-1) ... 275s Selecting previously unselected package texlive-latex-base. 275s Preparing to unpack .../320-texlive-latex-base_2024.20250114-1_all.deb ... 275s Unpacking texlive-latex-base (2024.20250114-1) ... 275s Selecting previously unselected package texlive-bibtex-extra. 275s Preparing to unpack .../321-texlive-bibtex-extra_2024.20250114-1_all.deb ... 275s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 277s Selecting previously unselected package r-bioc-biocstyle. 277s Preparing to unpack .../322-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 277s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 277s Selecting previously unselected package r-cran-cluster. 277s Preparing to unpack .../323-r-cran-cluster_2.1.8.1-1_amd64.deb ... 277s Unpacking r-cran-cluster (2.1.8.1-1) ... 277s Selecting previously unselected package r-cran-igraph. 277s Preparing to unpack .../324-r-cran-igraph_2.1.4-1_amd64.deb ... 277s Unpacking r-cran-igraph (2.1.4-1) ... 277s Selecting previously unselected package r-bioc-bluster. 277s Preparing to unpack .../325-r-bioc-bluster_1.16.0+dfsg-2_amd64.deb ... 277s Unpacking r-bioc-bluster (1.16.0+dfsg-2) ... 277s Selecting previously unselected package r-bioc-sparsematrixstats. 277s Preparing to unpack .../326-r-bioc-sparsematrixstats_1.18.0+dfsg-2_amd64.deb ... 277s Unpacking r-bioc-sparsematrixstats (1.18.0+dfsg-2) ... 277s Selecting previously unselected package r-bioc-delayedmatrixstats. 277s Preparing to unpack .../327-r-bioc-delayedmatrixstats_1.28.1+ds-1_all.deb ... 277s Unpacking r-bioc-delayedmatrixstats (1.28.1+ds-1) ... 277s Selecting previously unselected package r-cran-locfit. 277s Preparing to unpack .../328-r-cran-locfit_1.5-9.12-1_amd64.deb ... 277s Unpacking r-cran-locfit (1.5-9.12-1) ... 277s Selecting previously unselected package r-cran-gtable. 277s Preparing to unpack .../329-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 277s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 277s Selecting previously unselected package r-cran-isoband. 277s Preparing to unpack .../330-r-cran-isoband_0.2.7-1_amd64.deb ... 277s Unpacking r-cran-isoband (0.2.7-1) ... 277s Selecting previously unselected package r-cran-mass. 277s Preparing to unpack .../331-r-cran-mass_7.3-64-1_amd64.deb ... 277s Unpacking r-cran-mass (7.3-64-1) ... 277s Selecting previously unselected package r-cran-nlme. 277s Preparing to unpack .../332-r-cran-nlme_3.1.167-1_amd64.deb ... 277s Unpacking r-cran-nlme (3.1.167-1) ... 277s Selecting previously unselected package r-cran-mgcv. 277s Preparing to unpack .../333-r-cran-mgcv_1.9-1-1_amd64.deb ... 277s Unpacking r-cran-mgcv (1.9-1-1) ... 277s Selecting previously unselected package r-cran-farver. 277s Preparing to unpack .../334-r-cran-farver_2.1.2-1_amd64.deb ... 277s Unpacking r-cran-farver (2.1.2-1) ... 277s Selecting previously unselected package r-cran-labeling. 277s Preparing to unpack .../335-r-cran-labeling_0.4.3-1_all.deb ... 277s Unpacking r-cran-labeling (0.4.3-1) ... 277s Selecting previously unselected package r-cran-colorspace. 277s Preparing to unpack .../336-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 277s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 278s Selecting previously unselected package r-cran-munsell. 278s Preparing to unpack .../337-r-cran-munsell_0.5.1-1_all.deb ... 278s Unpacking r-cran-munsell (0.5.1-1) ... 278s Selecting previously unselected package r-cran-rcolorbrewer. 278s Preparing to unpack .../338-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 278s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 278s Selecting previously unselected package r-cran-viridislite. 278s Preparing to unpack .../339-r-cran-viridislite_0.4.2-2_all.deb ... 278s Unpacking r-cran-viridislite (0.4.2-2) ... 278s Selecting previously unselected package r-cran-scales. 278s Preparing to unpack .../340-r-cran-scales_1.3.0-1_all.deb ... 278s Unpacking r-cran-scales (1.3.0-1) ... 278s Selecting previously unselected package r-cran-ggplot2. 278s Preparing to unpack .../341-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 278s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 278s Selecting previously unselected package r-cran-rcpparmadillo. 278s Preparing to unpack .../342-r-cran-rcpparmadillo_14.2.3-1-1_amd64.deb ... 278s Unpacking r-cran-rcpparmadillo (14.2.3-1-1) ... 278s Selecting previously unselected package r-bioc-deseq2. 278s Preparing to unpack .../343-r-bioc-deseq2_1.46.0+dfsg-2_amd64.deb ... 278s Unpacking r-bioc-deseq2 (1.46.0+dfsg-2) ... 278s Selecting previously unselected package r-cran-statmod. 278s Preparing to unpack .../344-r-cran-statmod_1.5.0-1_amd64.deb ... 278s Unpacking r-cran-statmod (1.5.0-1) ... 278s Selecting previously unselected package r-bioc-limma. 278s Preparing to unpack .../345-r-bioc-limma_3.62.2+dfsg-1_amd64.deb ... 278s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 278s Selecting previously unselected package r-bioc-edger. 278s Preparing to unpack .../346-r-bioc-edger_4.4.2+dfsg-1_amd64.deb ... 278s Unpacking r-bioc-edger (4.4.2+dfsg-1) ... 278s Selecting previously unselected package r-cran-xml. 278s Preparing to unpack .../347-r-cran-xml_3.99-0.18-1_amd64.deb ... 278s Unpacking r-cran-xml (3.99-0.18-1) ... 278s Selecting previously unselected package r-cran-bitops. 278s Preparing to unpack .../348-r-cran-bitops_1.0-9-1_amd64.deb ... 278s Unpacking r-cran-bitops (1.0-9-1) ... 278s Selecting previously unselected package r-bioc-rhtslib. 278s Preparing to unpack .../349-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ... 278s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 278s Selecting previously unselected package r-bioc-rsamtools. 278s Preparing to unpack .../350-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ... 278s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 279s Selecting previously unselected package r-bioc-genomicalignments. 279s Preparing to unpack .../351-r-bioc-genomicalignments_1.42.0-2_amd64.deb ... 279s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 279s Selecting previously unselected package r-cran-rcurl. 279s Preparing to unpack .../352-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 279s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 279s Selecting previously unselected package r-cran-rjson. 279s Preparing to unpack .../353-r-cran-rjson_0.2.23-1_amd64.deb ... 279s Unpacking r-cran-rjson (0.2.23-1) ... 279s Selecting previously unselected package r-cran-restfulr. 279s Preparing to unpack .../354-r-cran-restfulr_0.0.15-1_amd64.deb ... 279s Unpacking r-cran-restfulr (0.0.15-1) ... 279s Selecting previously unselected package r-bioc-rtracklayer. 279s Preparing to unpack .../355-r-bioc-rtracklayer_1.66.0-2_amd64.deb ... 279s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 279s Selecting previously unselected package r-bioc-genomicfeatures. 279s Preparing to unpack .../356-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ... 279s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 279s Selecting previously unselected package r-bioc-protgenerics. 279s Preparing to unpack .../357-r-bioc-protgenerics_1.38.0-2_all.deb ... 279s Unpacking r-bioc-protgenerics (1.38.0-2) ... 279s Selecting previously unselected package r-bioc-ensembldb. 279s Preparing to unpack .../358-r-bioc-ensembldb_2.30.0+dfsg-3_all.deb ... 279s Unpacking r-bioc-ensembldb (2.30.0+dfsg-3) ... 279s Selecting previously unselected package r-bioc-experimenthub. 279s Preparing to unpack .../359-r-bioc-experimenthub_2.14.0+ds-2_all.deb ... 279s Unpacking r-bioc-experimenthub (2.14.0+ds-2) ... 279s Selecting previously unselected package r-cran-httr2. 279s Preparing to unpack .../360-r-cran-httr2_1.1.1-1_all.deb ... 279s Unpacking r-cran-httr2 (1.1.1-1) ... 279s Selecting previously unselected package r-bioc-gypsum. 279s Preparing to unpack .../361-r-bioc-gypsum_1.2.0+ds-2_all.deb ... 279s Unpacking r-bioc-gypsum (1.2.0+ds-2) ... 279s Selecting previously unselected package r-bioc-metapod. 279s Preparing to unpack .../362-r-bioc-metapod_1.14.0+dfsg-2_amd64.deb ... 279s Unpacking r-bioc-metapod (1.14.0+dfsg-2) ... 279s Selecting previously unselected package r-bioc-residualmatrix. 279s Preparing to unpack .../363-r-bioc-residualmatrix_1.16.0+dfsg-2_all.deb ... 279s Unpacking r-bioc-residualmatrix (1.16.0+dfsg-2) ... 279s Selecting previously unselected package r-bioc-scuttle. 279s Preparing to unpack .../364-r-bioc-scuttle_1.16.0+dfsg-3_amd64.deb ... 279s Unpacking r-bioc-scuttle (1.16.0+dfsg-3) ... 279s Selecting previously unselected package r-cran-beeswarm. 279s Preparing to unpack .../365-r-cran-beeswarm_0.4.0-1_amd64.deb ... 279s Unpacking r-cran-beeswarm (0.4.0-1) ... 279s Selecting previously unselected package r-cran-vipor. 279s Preparing to unpack .../366-r-cran-vipor_0.4.7-1_all.deb ... 279s Unpacking r-cran-vipor (0.4.7-1) ... 279s Selecting previously unselected package r-cran-ggbeeswarm. 279s Preparing to unpack .../367-r-cran-ggbeeswarm_0.7.2-1_all.deb ... 279s Unpacking r-cran-ggbeeswarm (0.7.2-1) ... 279s Selecting previously unselected package r-cran-gridextra. 279s Preparing to unpack .../368-r-cran-gridextra_2.3-3build1_all.deb ... 279s Unpacking r-cran-gridextra (2.3-3build1) ... 279s Selecting previously unselected package r-cran-viridis. 279s Preparing to unpack .../369-r-cran-viridis_0.6.5-1_all.deb ... 279s Unpacking r-cran-viridis (0.6.5-1) ... 279s Selecting previously unselected package r-cran-rtsne. 279s Preparing to unpack .../370-r-cran-rtsne_0.17-1_amd64.deb ... 279s Unpacking r-cran-rtsne (0.17-1) ... 280s Selecting previously unselected package r-cran-rcppeigen. 280s Preparing to unpack .../371-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 280s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 280s Selecting previously unselected package r-cran-rcppml. 280s Preparing to unpack .../372-r-cran-rcppml_0.3.7-2_amd64.deb ... 280s Unpacking r-cran-rcppml (0.3.7-2) ... 280s Selecting previously unselected package r-cran-fnn. 280s Preparing to unpack .../373-r-cran-fnn_1.1.4.1-1_amd64.deb ... 280s Unpacking r-cran-fnn (1.1.4.1-1) ... 280s Selecting previously unselected package r-cran-rcppannoy. 280s Preparing to unpack .../374-r-cran-rcppannoy_0.0.22-1_amd64.deb ... 280s Unpacking r-cran-rcppannoy (0.0.22-1) ... 280s Selecting previously unselected package r-cran-rspectra. 280s Preparing to unpack .../375-r-cran-rspectra_0.16-2-1_amd64.deb ... 280s Unpacking r-cran-rspectra (0.16-2-1) ... 280s Selecting previously unselected package r-cran-sitmo. 280s Preparing to unpack .../376-r-cran-sitmo_2.0.2-1_amd64.deb ... 280s Unpacking r-cran-sitmo (2.0.2-1) ... 280s Selecting previously unselected package r-cran-dqrng. 280s Preparing to unpack .../377-r-cran-dqrng_0.3.2+dfsg-1_amd64.deb ... 280s Unpacking r-cran-dqrng (0.3.2+dfsg-1) ... 280s Selecting previously unselected package r-cran-rcppprogress. 280s Preparing to unpack .../378-r-cran-rcppprogress_0.4.2-2build1_all.deb ... 280s Unpacking r-cran-rcppprogress (0.4.2-2build1) ... 280s Selecting previously unselected package r-cran-uwot. 280s Preparing to unpack .../379-r-cran-uwot_0.2.3-1_amd64.deb ... 280s Unpacking r-cran-uwot (0.2.3-1) ... 280s Selecting previously unselected package r-cran-pheatmap. 280s Preparing to unpack .../380-r-cran-pheatmap_1.0.12-2build1_all.deb ... 280s Unpacking r-cran-pheatmap (1.0.12-2build1) ... 280s Selecting previously unselected package r-cran-ggrepel. 280s Preparing to unpack .../381-r-cran-ggrepel_0.9.6-1_amd64.deb ... 280s Unpacking r-cran-ggrepel (0.9.6-1) ... 280s Selecting previously unselected package r-cran-cairo. 280s Preparing to unpack .../382-r-cran-cairo_1.6-2-1_amd64.deb ... 280s Unpacking r-cran-cairo (1.6-2-1) ... 280s Selecting previously unselected package r-cran-systemfonts. 280s Preparing to unpack .../383-r-cran-systemfonts_1.2.1-1_amd64.deb ... 280s Unpacking r-cran-systemfonts (1.2.1-1) ... 280s Selecting previously unselected package r-cran-textshaping. 280s Preparing to unpack .../384-r-cran-textshaping_0.3.7-2_amd64.deb ... 280s Unpacking r-cran-textshaping (0.3.7-2) ... 280s Selecting previously unselected package r-cran-ragg. 280s Preparing to unpack .../385-r-cran-ragg_1.3.3-1_amd64.deb ... 280s Unpacking r-cran-ragg (1.3.3-1) ... 280s Selecting previously unselected package r-cran-ggrastr. 280s Preparing to unpack .../386-r-cran-ggrastr_1.0.2-1_all.deb ... 280s Unpacking r-cran-ggrastr (1.0.2-1) ... 280s Selecting previously unselected package r-bioc-scater. 280s Preparing to unpack .../387-r-bioc-scater_1.34.1+ds-1_all.deb ... 280s Unpacking r-bioc-scater (1.34.1+ds-1) ... 280s Selecting previously unselected package r-bioc-scran. 280s Preparing to unpack .../388-r-bioc-scran_1.34.0+dfsg-3_amd64.deb ... 280s Unpacking r-bioc-scran (1.34.0+dfsg-3) ... 280s Selecting previously unselected package r-bioc-scrnaseq. 280s Preparing to unpack .../389-r-bioc-scrnaseq_2.20.0+ds-2_all.deb ... 280s Unpacking r-bioc-scrnaseq (2.20.0+ds-2) ... 280s Selecting previously unselected package r-cran-brio. 280s Preparing to unpack .../390-r-cran-brio_1.1.5-1_amd64.deb ... 280s Unpacking r-cran-brio (1.1.5-1) ... 281s Selecting previously unselected package r-cran-ps. 281s Preparing to unpack .../391-r-cran-ps_1.9.0-1_amd64.deb ... 281s Unpacking r-cran-ps (1.9.0-1) ... 281s Selecting previously unselected package r-cran-processx. 281s Preparing to unpack .../392-r-cran-processx_3.8.6-1_amd64.deb ... 281s Unpacking r-cran-processx (3.8.6-1) ... 281s Selecting previously unselected package r-cran-callr. 281s Preparing to unpack .../393-r-cran-callr_3.7.6-1_all.deb ... 281s Unpacking r-cran-callr (3.7.6-1) ... 281s Selecting previously unselected package r-cran-desc. 281s Preparing to unpack .../394-r-cran-desc_1.4.3-1_all.deb ... 281s Unpacking r-cran-desc (1.4.3-1) ... 281s Selecting previously unselected package r-cran-diffobj. 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287s Setting up r-cran-fastmap (1.2.0-1) ... 287s Setting up r-cran-png (0.1-8-1build2) ... 287s Setting up r-bioc-biobase (2.66.0-2) ... 287s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 287s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 287s Setting up r-cran-utf8 (1.2.4-1) ... 287s Setting up r-cran-colorspace (2.1-1+dfsg-1) ... 287s Setting up r-cran-stringi (1.8.4-1build1) ... 287s Setting up texlive-latex-base (2024.20250114-1) ... 287s Setting up r-cran-cpp11 (0.5.2-1) ... 287s Setting up r-cran-sitmo (2.0.2-1) ... 287s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 287s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 287s Setting up r-cran-isoband (0.2.7-1) ... 287s Setting up r-cran-futile.logger (1.4.3-4build1) ... 287s Setting up r-cran-waldo (0.6.1-2) ... 287s Setting up r-bioc-limma (3.62.2+dfsg-1) ... 287s Setting up r-cran-gtable (0.3.6+dfsg-1) ... 287s Setting up r-cran-later (1.4.1+dfsg-1) ... 287s Setting up r-cran-matrix (1.7-3-1) ... 287s Setting up r-cran-htmltools (0.5.8.1-1) ... 287s Setting up r-cran-tinytex (0.56-1) ... 287s Setting up r-cran-irlba (2.3.5.1-4) ... 287s Setting up r-cran-knitr (1.49+dfsg-1) ... 287s Setting up r-cran-mgcv (1.9-1-1) ... 287s Setting up g++ (4:14.2.0-1ubuntu1) ... 287s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 287s Setting up r-cran-cachem (1.1.0-1) ... 287s Setting up r-cran-sass (0.4.9+dfsg-1) ... 287s Setting up build-essential (12.10ubuntu1) ... 287s Setting up r-cran-rtsne (0.17-1) ... 287s Setting up r-cran-rcpparmadillo (14.2.3-1-1) ... 287s Setting up r-bioc-iranges (2.40.1-2) ... 287s Setting up r-cran-dqrng (0.3.2+dfsg-1) ... 287s Setting up r-bioc-metapod (1.14.0+dfsg-2) ... 287s Setting up r-bioc-assorthead (1.0.1+ds-2) ... 287s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 287s Setting up r-cran-restfulr (0.0.15-1) ... 287s Setting up r-bioc-biocneighbors (2.0.1+ds-2) ... 287s Setting up r-bioc-sparsematrixstats (1.18.0+dfsg-2) ... 287s Setting up r-cran-vctrs (0.6.5-1) ... 287s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ... 287s Setting up r-bioc-alabaster.schemas (1.6.0+ds-2) ... 287s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 287s Setting up r-cran-rcppannoy (0.0.22-1) ... 287s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 287s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 287s Setting up r-cran-stringr (1.5.1-1) ... 287s Setting up r-bioc-biocparallel (1.40.0-2) ... 287s Setting up r-cran-callr (3.7.6-1) ... 287s Setting up r-bioc-edger (4.4.2+dfsg-1) ... 287s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 287s Setting up r-cran-desc (1.4.3-1) ... 287s Setting up r-bioc-rhdf5 (2.50.2+dfsg-1build1) ... 287s Setting up r-cran-munsell (0.5.1-1) ... 287s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 287s Setting up r-cran-fontawesome (0.5.3-1) ... 287s Setting up r-cran-igraph (2.1.4-1) ... 287s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 287s Setting up gfortran (4:14.2.0-1ubuntu1) ... 287s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 287s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 287s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 287s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 287s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 287s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 287s Setting up texlive-bibtex-extra (2024.20250114-1) ... 287s Setting up r-cran-rsvd (1.0.5-1) ... 287s Setting up r-cran-httr2 (1.1.1-1) ... 287s Setting up r-cran-systemfonts (1.2.1-1) ... 287s Setting up r-bioc-bluster (1.16.0+dfsg-2) ... 287s Setting up r-cran-httr (1.4.7+dfsg-1) ... 287s Setting up r-bioc-gypsum (1.2.0+ds-2) ... 287s Setting up r-bioc-alabaster.base (1.6.1+ds-2build1) ... 287s Setting up r-cran-gridextra (2.3-3build1) ... 287s Setting up r-cran-scales (1.3.0-1) ... 287s Setting up r-cran-memoise (2.0.1-1) ... 287s Setting up r-cran-promises (1.3.2+dfsg-1) ... 287s Setting up r-cran-purrr (1.0.4-1) ... 287s Setting up r-cran-blob (1.2.4-1) ... 287s Setting up r-bioc-xvector (0.46.0-2) ... 287s Setting up r-cran-pkgbuild (1.4.6-1) ... 287s Setting up r-cran-rcppml (0.3.7-2) ... 287s Setting up r-cran-dplyr (1.1.4-4) ... 287s Setting up r-cran-rspectra (0.16-2-1) ... 287s Setting up r-cran-rsqlite (2.3.9-1) ... 287s Setting up r-cran-uwot (0.2.3-1) ... 287s Setting up r-cran-pheatmap (1.0.12-2build1) ... 287s Setting up r-cran-pkgload (1.4.0-1) ... 287s Setting up r-base-dev (4.4.3-1) ... 287s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 287s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 287s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 287s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 287s Setting up r-cran-textshaping (0.3.7-2) ... 287s Setting up r-cran-viridis (0.6.5-1) ... 287s Setting up r-cran-testthat (3.2.3-1) ... 287s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 287s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 287s Setting up r-cran-ragg (1.3.3-1) ... 287s Setting up r-cran-ggrepel (0.9.6-1) ... 287s Setting up r-cran-tidyr (1.3.1-1) ... 287s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 287s Setting up r-cran-dbplyr (2.5.0+dfsg-1) ... 287s Setting up r-cran-ggbeeswarm (0.7.2-1) ... 287s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 287s Setting up r-bioc-hdf5array (1.34.0-2build1) ... 287s Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ... 287s Setting up r-bioc-residualmatrix (1.16.0+dfsg-2) ... 287s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 287s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 287s Setting up r-bioc-delayedmatrixstats (1.28.1+ds-1) ... 287s Setting up r-bioc-annotationfilter (1.30.0+dfsg-2) ... 287s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 287s Setting up r-bioc-alabaster.matrix (1.6.1+ds-2) ... 287s Setting up r-cran-ggrastr (1.0.2-1) ... 287s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 287s Setting up r-bioc-beachmat (2.22.0+ds-2) ... 287s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 287s Setting up r-bioc-scaledmatrix (1.14.0+dfsg-2) ... 287s Setting up r-cran-bookdown (0.42+dfsg-1) ... 287s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 287s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 287s Setting up r-bioc-biocsingular (1.22.0+ds-2) ... 287s Setting up r-bioc-alabaster.ranges (1.6.0+ds-2) ... 287s Setting up r-bioc-deseq2 (1.46.0+dfsg-2) ... 287s Setting up r-bioc-annotationdbi (1.68.0-2) ... 287s Setting up r-bioc-annotationhub (3.14.0+dfsg-2) ... 287s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 287s Setting up r-bioc-genomicalignments (1.42.0-2) ... 287s Setting up r-bioc-alabaster.se (1.6.0+ds-2) ... 287s Setting up r-bioc-rtracklayer (1.66.0-2) ... 287s Setting up r-bioc-singlecellexperiment (1.28.1+ds-2) ... 287s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 287s Setting up r-bioc-experimenthub (2.14.0+ds-2) ... 287s Setting up r-bioc-scuttle (1.16.0+dfsg-3) ... 287s Setting up r-bioc-alabaster.sce (1.6.0+ds-2) ... 287s Setting up r-bioc-ensembldb (2.30.0+dfsg-3) ... 287s Setting up r-bioc-scran (1.34.0+dfsg-3) ... 287s Setting up r-bioc-scrnaseq (2.20.0+ds-2) ... 287s Setting up r-bioc-scater (1.34.1+ds-1) ... 287s Processing triggers for libc-bin (2.41-1ubuntu2) ... 287s Processing triggers for man-db (2.13.0-1) ... 289s Processing triggers for install-info (7.1.1-1) ... 289s Processing triggers for tex-common (6.19) ... 289s Running updmap-sys. This may take some time... done. 289s Running mktexlsr /var/lib/texmf ... done. 290s Building format(s) --all. 318s This may take some time... done. 319s autopkgtest [22:06:17]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 319s autopkgtest [22:06:17]: test pkg-r-autopkgtest: [----------------------- 319s Test: Try to load the R library scran 319s 319s R version 4.4.3 (2025-02-28) -- "Trophy Case" 319s Copyright (C) 2025 The R Foundation for Statistical Computing 319s Platform: x86_64-pc-linux-gnu 319s 319s R is free software and comes with ABSOLUTELY NO WARRANTY. 319s You are welcome to redistribute it under certain conditions. 319s Type 'license()' or 'licence()' for distribution details. 319s 319s R is a collaborative project with many contributors. 319s Type 'contributors()' for more information and 319s 'citation()' on how to cite R or R packages in publications. 319s 319s Type 'demo()' for some demos, 'help()' for on-line help, or 319s 'help.start()' for an HTML browser interface to help. 319s Type 'q()' to quit R. 319s 319s > library('scran') 320s Loading required package: SingleCellExperiment 320s Loading required package: SummarizedExperiment 320s Loading required package: MatrixGenerics 320s Loading required package: matrixStats 320s 320s Attaching package: ‘MatrixGenerics’ 320s 320s The following objects are masked from ‘package:matrixStats’: 320s 320s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 320s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 320s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 320s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 320s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 320s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 320s colWeightedMeans, colWeightedMedians, colWeightedSds, 320s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 320s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 320s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 320s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 320s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 320s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 320s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 320s rowWeightedSds, rowWeightedVars 320s 320s Loading required package: GenomicRanges 320s Loading required package: stats4 320s Loading required package: BiocGenerics 320s 320s Attaching package: ‘BiocGenerics’ 320s 320s The following objects are masked from ‘package:stats’: 320s 320s IQR, mad, sd, var, xtabs 320s 320s The following objects are masked from ‘package:base’: 320s 320s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 320s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 320s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 320s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 320s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 320s table, tapply, union, unique, unsplit, which.max, which.min 320s 320s Loading required package: S4Vectors 320s 320s Attaching package: ‘S4Vectors’ 320s 320s The following object is masked from ‘package:utils’: 320s 320s findMatches 320s 320s The following objects are masked from ‘package:base’: 320s 320s expand.grid, I, unname 320s 320s Loading required package: IRanges 321s Loading required package: GenomeInfoDb 321s Loading required package: Biobase 322s Welcome to Bioconductor 322s 322s Vignettes contain introductory material; view with 322s 'browseVignettes()'. To cite Bioconductor, see 322s 'citation("Biobase")', and for packages 'citation("pkgname")'. 322s 322s 322s Attaching package: ‘Biobase’ 322s 322s The following object is masked from ‘package:MatrixGenerics’: 322s 322s rowMedians 322s 322s The following objects are masked from ‘package:matrixStats’: 322s 322s anyMissing, rowMedians 322s 325s Loading required package: scuttle 326s > 326s > 326s Other tests are currently unsupported! 326s They will be progressively added. 327s autopkgtest [22:06:25]: test pkg-r-autopkgtest: -----------------------] 327s autopkgtest [22:06:25]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 327s pkg-r-autopkgtest PASS 328s autopkgtest [22:06:26]: @@@@@@@@@@@@@@@@@@@@ summary 328s pkg-r-autopkgtest PASS 333s nova [W] Skipping flock for amd64 333s Creating nova instance adt-plucky-amd64-r-bioc-scran-20250315-220058-juju-7f2275-prod-proposed-migration-environment-15-eb8d9a5d-e492-4f0d-a475-27cf187f9285 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 333s nova [W] Timed out waiting for 96a093ae-da4d-4e9f-89c1-91431c6b67b6 to get deleted.