0s autopkgtest [22:00:57]: starting date and time: 2025-03-15 22:00:57+0000
  0s autopkgtest [22:00:57]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [22:00:57]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.w7bw1bf5/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-s4arrays --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-3.secgroup --name adt-plucky-amd64-r-bioc-s4arrays-20250315-220056-juju-7f2275-prod-proposed-migration-environment-2-d60a38ca-3d11-4358-8feb-09ce573939af --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 59s autopkgtest [22:01:56]: testbed dpkg architecture: amd64
 59s autopkgtest [22:01:56]: testbed apt version: 2.9.31ubuntu1
 59s autopkgtest [22:01:56]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 59s autopkgtest [22:01:56]: testbed release detected to be: None
 60s autopkgtest [22:01:57]: updating testbed package index (apt update)
 60s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
 60s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 60s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 60s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 60s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB]
 60s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB]
 60s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB]
 60s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB]
 60s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB]
 60s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B]
 60s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B]
 60s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB]
 60s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB]
 60s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB]
 60s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B]
 60s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB]
 60s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B]
 60s Fetched 1265 kB in 0s (6175 kB/s)
 61s Reading package lists...
 61s Reading package lists...
 62s Building dependency tree...
 62s Reading state information...
 62s Calculating upgrade...
 62s Calculating upgrade...
 62s The following package was automatically installed and is no longer required:
 62s   libnl-genl-3-200
 62s Use 'sudo apt autoremove' to remove it.
 63s The following NEW packages will be installed:
 63s   bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10
 63s   linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic
 63s   linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic
 63s   linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids
 63s The following packages will be upgraded:
 63s   apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu
 63s   cloud-init cloud-init-base curl dosfstools fwupd gir1.2-girepository-2.0
 63s   gir1.2-glib-2.0 htop hwdata libapparmor1 libapt-pkg7.0 libaudit-common
 63s   libaudit1 libbinutils libbrotli1 libcap-ng0 libctf-nobfd0 libctf0
 63s   libcurl3t64-gnutls libcurl4t64 libestr0 libfwupd3 libgirepository-1.0-1
 63s   libglib2.0-0t64 libglib2.0-data libgprofng0 libjemalloc2 liblz4-1 liblzma5
 63s   libmm-glib0 libncurses6 libncursesw6 libnl-3-200 libnl-genl-3-200
 63s   libnl-route-3-200 libpci3 libpython3-stdlib libpython3.13
 63s   libpython3.13-minimal libpython3.13-stdlib libselinux1 libsframe1
 63s   libsqlite3-0 libtinfo6 libxml2 linux-firmware linux-generic
 63s   linux-headers-generic linux-headers-virtual linux-image-generic
 63s   linux-image-virtual linux-libc-dev linux-tools-common linux-virtual
 63s   media-types ncurses-base ncurses-bin ncurses-term pci.ids pciutils
 63s   pinentry-curses python-apt-common python3 python3-apt python3-cffi-backend
 63s   python3-dbus python3-gi python3-jinja2 python3-lazr.uri python3-markupsafe
 63s   python3-minimal python3-systemd python3-yaml python3.13 python3.13-gdbm
 63s   python3.13-minimal rsync rsyslog strace xz-utils
 63s 86 upgraded, 12 newly installed, 0 to remove and 0 not upgraded.
 63s Need to get 807 MB of archives.
 63s After this operation, 326 MB of additional disk space will be used.
 63s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB]
 63s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB]
 63s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB]
 63s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB]
 63s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB]
 63s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB]
 63s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB]
 63s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB]
 63s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB]
 63s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB]
 63s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB]
 63s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB]
 63s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB]
 63s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB]
 63s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB]
 63s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB]
 63s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB]
 63s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB]
 63s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB]
 63s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB]
 63s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB]
 63s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB]
 63s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB]
 63s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B]
 63s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB]
 63s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB]
 63s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB]
 63s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB]
 63s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB]
 63s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB]
 63s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB]
 63s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB]
 63s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B]
 63s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB]
 63s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB]
 63s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB]
 63s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB]
 63s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB]
 63s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB]
 63s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB]
 63s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB]
 63s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB]
 63s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB]
 63s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB]
 63s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB]
 63s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB]
 63s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB]
 63s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB]
 63s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB]
 63s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB]
 63s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB]
 63s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB]
 63s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB]
 63s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB]
 63s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB]
 63s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB]
 63s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB]
 63s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB]
 63s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB]
 63s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB]
 63s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B]
 63s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB]
 63s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB]
 63s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB]
 63s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB]
 63s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
 63s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB]
 63s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB]
 63s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB]
 63s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB]
 63s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB]
 63s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB]
 63s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB]
 63s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB]
 63s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB]
 63s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB]
 63s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB]
 63s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB]
 68s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB]
 68s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB]
 68s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB]
 69s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B]
 69s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB]
 69s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B]
 69s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB]
 69s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B]
 69s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB]
 69s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB]
 69s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB]
 69s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB]
 69s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB]
 69s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB]
 69s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B]
 69s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB]
 69s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB]
 69s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB]
 69s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB]
 69s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B]
 70s Preconfiguring packages ...
 70s Fetched 807 MB in 7s (121 MB/s)
 70s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 109138 files and directories currently installed.)
 70s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ...
 70s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ...
 70s Setting up ncurses-bin (6.5+20250216-2) ...
 70s (Reading database ... 
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(Reading database ... 109138 files and directories currently installed.)
 71s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ...
 71s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ...
 71s Setting up ncurses-base (6.5+20250216-2) ...
 71s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 109138 files and directories currently installed.)
 71s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ...
 71s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ...
 71s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ...
 71s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ...
 72s Setting up liblz4-1:amd64 (1.10.0-4) ...
 72s (Reading database ... 
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(Reading database ... 109138 files and directories currently installed.)
 72s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ...
 72s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ...
 72s Setting up liblzma5:amd64 (5.6.4-1) ...
 72s (Reading database ... 
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(Reading database ... 109138 files and directories currently installed.)
 72s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ...
 72s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ...
 72s Setting up libapt-pkg7.0:amd64 (2.9.33) ...
 72s (Reading database ... 
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 95s Setting up apt-utils (2.9.33) ...
 95s Setting up libdebuginfod-common (0.192-4) ...
 95s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ...
 95s Setting up bpftool (7.6.0+6.14.0-10.10) ...
 95s Setting up libestr0:amd64 (0.1.11-2) ...
 95s Setting up libbrotli1:amd64 (1.1.0-2build4) ...
 95s Setting up libsqlite3-0:amd64 (3.46.1-2) ...
 95s Setting up dosfstools (4.2-1.2) ...
 95s Setting up rsyslog (8.2412.0-2ubuntu2) ...
 95s info: The user `syslog' is already a member of `adm'.
 96s Setting up binutils-common:amd64 (2.44-3ubuntu1) ...
 96s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ...
 96s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ...
 96s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ...
 96s Setting up linux-headers-generic (6.14.0-10.10) ...
 96s Setting up libjemalloc2:amd64 (5.3.0-3) ...
 96s Setting up libsframe1:amd64 (2.44-3ubuntu1) ...
 96s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ...
 96s Setting up apparmor (4.1.0~beta5-0ubuntu8) ...
 97s Installing new version of config file /etc/apparmor.d/openvpn ...
 98s Reloading AppArmor profiles 
100s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ...
100s No schema files found: doing nothing.
100s Setting up libglib2.0-data (2.84.0-1) ...
100s Setting up libncurses6:amd64 (6.5+20250216-2) ...
100s Setting up strace (6.13+ds-1ubuntu1) ...
100s Setting up xz-utils (5.6.4-1) ...
100s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ...
100s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ...
102s Setting up libncursesw6:amd64 (6.5+20250216-2) ...
102s Setting up libpci3:amd64 (1:3.13.0-2) ...
102s Setting up python-apt-common (2.9.9build1) ...
102s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ...
102s Setting up pnp.ids (0.393-3) ...
102s Setting up libnl-3-200:amd64 (3.7.0-1) ...
102s Setting up python3.13-minimal (3.13.2-2) ...
103s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ...
103s Setting up libbinutils:amd64 (2.44-3ubuntu1) ...
103s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ...
103s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ...
103s Setting up rsync (3.4.1+ds1-3) ...
104s rsync.service is a disabled or a static unit not running, not starting it.
104s Setting up python3.13-gdbm (3.13.2-2) ...
104s Setting up libpython3-stdlib:amd64 (3.13.2-2) ...
104s Setting up ncurses-term (6.5+20250216-2) ...
104s Setting up libctf0:amd64 (2.44-3ubuntu1) ...
104s Setting up libpython3.13:amd64 (3.13.2-2) ...
104s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
104s Setting up libdebuginfod1t64:amd64 (0.192-4) ...
104s Setting up linux-headers-virtual (6.14.0-10.10) ...
104s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ...
104s Setting up python3.13 (3.13.2-2) ...
105s Setting up htop (3.4.0-2) ...
105s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ...
107s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic
107s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic
107s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic
107s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic
107s Setting up libfwupd3:amd64 (2.0.6-4) ...
107s Setting up python3 (3.13.2-2) ...
108s Setting up python3-markupsafe (2.1.5-1build4) ...
108s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ...
110s Setting up libnl-route-3-200:amd64 (3.7.0-1) ...
110s Setting up hwdata (0.393-3) ...
110s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
110s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ...
110s Setting up linux-perf (6.14.0-10.10) ...
110s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ...
110s Setting up python3-gi (3.50.0-4build1) ...
111s Setting up pciutils (1:3.13.0-2) ...
111s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ...
111s Setting up curl (8.12.1-3ubuntu1) ...
111s Setting up linux-image-virtual (6.14.0-10.10) ...
111s Setting up linux-tools-common (6.14.0-10.10) ...
111s Setting up fwupd (2.0.6-4) ...
111s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
111s fwupd.service is a disabled or a static unit not running, not starting it.
111s Setting up python3-systemd (235-1build6) ...
111s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ...
111s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ...
111s Setting up linux-image-generic (6.14.0-10.10) ...
111s Setting up python3-dbus (1.3.2-5build5) ...
112s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ...
112s Setting up linux-generic (6.14.0-10.10) ...
112s Setting up python3-apt (2.9.9build1) ...
112s Setting up python3-yaml (6.0.2-1build2) ...
112s Setting up python3-lazr.uri (1.0.6-6) ...
112s Setting up binutils (2.44-3ubuntu1) ...
112s Setting up cloud-init-base (25.1-0ubuntu3) ...
114s Setting up linux-virtual (6.14.0-10.10) ...
114s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ...
114s Setting up cloud-init (25.1-0ubuntu3) ...
114s Processing triggers for systemd (257.3-1ubuntu3) ...
114s Processing triggers for man-db (2.13.0-1) ...
116s Processing triggers for dbus (1.16.2-1ubuntu1) ...
116s Processing triggers for libc-bin (2.41-1ubuntu1) ...
116s Processing triggers for initramfs-tools (0.146ubuntu1) ...
116s update-initramfs: Generating /boot/initrd.img-6.12.0-16-generic
116s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
131s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ...
131s /etc/kernel/postinst.d/initramfs-tools:
131s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic
131s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
144s /etc/kernel/postinst.d/zz-update-grub:
144s Sourcing file `/etc/default/grub'
144s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
144s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
144s Generating grub configuration file ...
144s Found linux image: /boot/vmlinuz-6.14.0-10-generic
144s Found initrd image: /boot/initrd.img-6.14.0-10-generic
144s Found linux image: /boot/vmlinuz-6.12.0-16-generic
144s Found initrd image: /boot/initrd.img-6.12.0-16-generic
144s Found linux image: /boot/vmlinuz-6.11.0-8-generic
144s Found initrd image: /boot/initrd.img-6.11.0-8-generic
145s Warning: os-prober will not be executed to detect other bootable partitions.
145s Systems on them will not be added to the GRUB boot configuration.
145s Check GRUB_DISABLE_OS_PROBER documentation entry.
145s Adding boot menu entry for UEFI Firmware Settings ...
145s done
146s Reading package lists...
146s Building dependency tree...
146s Reading state information...
147s Solving dependencies...
147s The following packages will be REMOVED:
147s   libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib*
147s   libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
147s   linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic*
147s   linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic*
147s   linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic*
147s   linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8*
147s   linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16*
147s   linux-tools-6.12.0-16-generic*
148s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded.
148s After this operation, 545 MB disk space will be freed.
148s (Reading database ... 
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148s Removing libnl-genl-3-200:amd64 (3.7.0-1) ...
148s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
148s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
148s Removing libpython3.12t64:amd64 (3.12.9-1) ...
148s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ...
148s Removing libnsl2:amd64 (1.3.0-3build3) ...
148s Removing libpython3.12-minimal:amd64 (3.12.9-1) ...
148s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
149s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
151s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ...
151s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ...
154s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ...
154s /etc/kernel/postrm.d/initramfs-tools:
154s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic
154s /etc/kernel/postrm.d/zz-update-grub:
154s Sourcing file `/etc/default/grub'
154s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
154s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
154s Generating grub configuration file ...
154s Found linux image: /boot/vmlinuz-6.14.0-10-generic
154s Found initrd image: /boot/initrd.img-6.14.0-10-generic
155s Found linux image: /boot/vmlinuz-6.12.0-16-generic
155s Found initrd image: /boot/initrd.img-6.12.0-16-generic
155s Warning: os-prober will not be executed to detect other bootable partitions.
155s Systems on them will not be added to the GRUB boot configuration.
155s Check GRUB_DISABLE_OS_PROBER documentation entry.
155s Adding boot menu entry for UEFI Firmware Settings ...
155s done
155s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ...
155s W: Removing the running kernel
155s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic
155s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic
155s /etc/kernel/postrm.d/initramfs-tools:
155s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic
155s /etc/kernel/postrm.d/zz-update-grub:
155s Sourcing file `/etc/default/grub'
155s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
155s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
155s Generating grub configuration file ...
155s Found linux image: /boot/vmlinuz-6.14.0-10-generic
155s Found initrd image: /boot/initrd.img-6.14.0-10-generic
156s Warning: os-prober will not be executed to detect other bootable partitions.
156s Systems on them will not be added to the GRUB boot configuration.
156s Check GRUB_DISABLE_OS_PROBER documentation entry.
156s Adding boot menu entry for UEFI Firmware Settings ...
156s done
156s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
156s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ...
158s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ...
158s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ...
158s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ...
158s Processing triggers for libc-bin (2.41-1ubuntu1) ...
158s (Reading database ... 
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158s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ...
158s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ...
158s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ...
158s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ...
158s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed
158s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
158s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ...
158s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty
158s autopkgtest [22:03:35]: upgrading testbed (apt dist-upgrade and autopurge)
159s Reading package lists...
159s Building dependency tree...
159s Reading state information...
159s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
159s Starting 2 pkgProblemResolver with broken count: 0
159s Done
160s Entering ResolveByKeep
160s 
160s Calculating upgrade...
161s The following packages will be upgraded:
161s   libc-bin libc-dev-bin libc6 libc6-dev locales
161s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
161s Need to get 10.5 MB of archives.
161s After this operation, 1024 B of additional disk space will be used.
161s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB]
161s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB]
161s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB]
161s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB]
161s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB]
161s Preconfiguring packages ...
161s Fetched 10.5 MB in 0s (39.0 MB/s)
161s (Reading database ... 
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(Reading database ... 76968 files and directories currently installed.)
161s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ...
161s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
162s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ...
162s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
162s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ...
162s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
162s Setting up libc6:amd64 (2.41-1ubuntu2) ...
162s (Reading database ... 
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162s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ...
162s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
163s Setting up libc-bin (2.41-1ubuntu2) ...
163s (Reading database ... 
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163s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
163s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
163s Setting up locales (2.41-1ubuntu2) ...
164s Generating locales (this might take a while)...
166s   en_US.UTF-8... done
166s Generation complete.
166s Setting up libc-dev-bin (2.41-1ubuntu2) ...
166s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ...
166s Processing triggers for man-db (2.13.0-1) ...
167s Processing triggers for systemd (257.3-1ubuntu3) ...
168s Reading package lists...
169s Building dependency tree...
169s Reading state information...
169s Starting pkgProblemResolver with broken count: 0
169s Starting 2 pkgProblemResolver with broken count: 0
169s Done
169s Solving dependencies...
170s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
170s autopkgtest [22:03:47]: rebooting testbed after setup commands that affected boot
174s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
194s autopkgtest [22:04:11]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025
194s autopkgtest [22:04:11]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-s4arrays
196s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-s4arrays 1.6.0+dfsg-2 (dsc) [2267 B]
196s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-s4arrays 1.6.0+dfsg-2 (tar) [57.4 kB]
196s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-s4arrays 1.6.0+dfsg-2 (diff) [5424 B]
196s gpgv: Signature made Sun Jan 12 11:41:49 2025 UTC
196s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
196s gpgv:                issuer "crusoe@debian.org"
196s gpgv: Can't check signature: No public key
196s dpkg-source: warning: cannot verify inline signature for ./r-bioc-s4arrays_1.6.0+dfsg-2.dsc: no acceptable signature found
196s autopkgtest [22:04:13]: testing package r-bioc-s4arrays version 1.6.0+dfsg-2
196s autopkgtest [22:04:13]: build not needed
198s autopkgtest [22:04:15]: test pkg-r-autopkgtest: preparing testbed
198s Reading package lists...
198s Building dependency tree...
198s Reading state information...
199s Starting pkgProblemResolver with broken count: 0
199s Starting 2 pkgProblemResolver with broken count: 0
199s Done
200s The following NEW packages will be installed:
200s   build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu
200s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
200s   fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
200s   g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14
200s   gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14
200s   gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools
200s   javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3
200s   libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1
200s   libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev
200s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6
200s   libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev
200s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap
200s   libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
200s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
200s   libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr
200s   libjs-popper.js libjs-prettify libjs-sifter.js
200s   libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3
200s   liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3
200s   libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
200s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
200s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1
200s   libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev
200s   libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0
200s   libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7
200s   libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1
200s   libxss1 libxt6t64 libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv
200s   node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin
200s   r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocparallel
200s   r-bioc-biocstyle r-bioc-biocversion r-bioc-delayedarray r-bioc-iranges
200s   r-bioc-matrixgenerics r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
200s   r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-base64enc r-cran-bh
200s   r-cran-biocmanager r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem
200s   r-cran-callr r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11
200s   r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest r-cran-evaluate
200s   r-cran-fastmap r-cran-fontawesome r-cran-formatr r-cran-fs
200s   r-cran-futile.logger r-cran-futile.options r-cran-glue r-cran-highr
200s   r-cran-htmltools r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr
200s   r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler
200s   r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime
200s   r-cran-pkgbuild r-cran-pkgkitten r-cran-pkgload r-cran-praise
200s   r-cran-processx r-cran-promises r-cran-ps r-cran-r6 r-cran-rappdirs
200s   r-cran-rcpp r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-sass
200s   r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-testthat r-cran-tinytex
200s   r-cran-waldo r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml t1utils
200s   tex-common texlive-base texlive-bibtex-extra texlive-binaries
200s   texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev
200s 0 upgraded, 229 newly installed, 0 to remove and 0 not upgraded.
200s Need to get 361 MB of archives.
200s After this operation, 1241 MB of additional disk space will be used.
200s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB]
200s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB]
200s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB]
201s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B]
201s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B]
201s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB]
201s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB]
201s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB]
201s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB]
201s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB]
201s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB]
201s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB]
201s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB]
201s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB]
201s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB]
201s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB]
201s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB]
201s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB]
201s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B]
201s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B]
201s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB]
201s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB]
201s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB]
201s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B]
201s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B]
201s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
201s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB]
201s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
201s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
201s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB]
201s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB]
201s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB]
201s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
201s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
201s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB]
201s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
202s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB]
202s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB]
202s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB]
202s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB]
202s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B]
202s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B]
202s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB]
202s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B]
202s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB]
202s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB]
202s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB]
202s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB]
202s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB]
202s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB]
202s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B]
202s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB]
202s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
202s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
202s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
202s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
202s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB]
202s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB]
202s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB]
202s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB]
202s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
202s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB]
202s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
202s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB]
202s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB]
202s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB]
202s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB]
202s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
202s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
202s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
202s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
202s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
202s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
202s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB]
202s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
202s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
202s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
202s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
202s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
202s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
202s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
202s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
202s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
202s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
202s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
202s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB]
202s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB]
202s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB]
202s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB]
202s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB]
202s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB]
202s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB]
202s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB]
202s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB]
202s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB]
202s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB]
202s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB]
202s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB]
202s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB]
202s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB]
202s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB]
202s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B]
202s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB]
202s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB]
202s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB]
202s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB]
202s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB]
202s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB]
202s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB]
202s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB]
202s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB]
202s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB]
202s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB]
203s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB]
203s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB]
203s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
203s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB]
203s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB]
203s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
203s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
203s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB]
203s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB]
203s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB]
203s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB]
203s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB]
203s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB]
203s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB]
203s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB]
203s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB]
203s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
203s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB]
203s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB]
203s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B]
203s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB]
203s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
203s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB]
203s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB]
203s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB]
203s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB]
203s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB]
203s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB]
203s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB]
203s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B]
203s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
203s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
203s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB]
203s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB]
203s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
203s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
203s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB]
203s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB]
203s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B]
203s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB]
203s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB]
203s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB]
203s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB]
203s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB]
204s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB]
204s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB]
204s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB]
204s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB]
204s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
204s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB]
204s Get:164 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
204s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB]
204s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB]
204s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
204s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB]
204s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB]
204s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
204s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
204s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB]
204s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB]
204s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB]
204s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB]
204s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB]
204s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB]
204s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB]
204s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB]
204s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB]
204s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB]
204s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
204s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB]
204s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB]
204s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
204s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB]
204s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB]
204s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB]
204s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB]
204s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB]
204s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
204s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB]
204s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
204s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
204s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB]
204s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB]
204s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
204s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB]
204s Get:199 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB]
204s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB]
204s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB]
204s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB]
204s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB]
205s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB]
205s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB]
205s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB]
205s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB]
205s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB]
205s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB]
205s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB]
205s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB]
205s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB]
205s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB]
205s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
205s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB]
205s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1392 kB]
205s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB]
205s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB]
205s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB]
205s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB]
205s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB]
205s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB]
205s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB]
205s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB]
205s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB]
205s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB]
205s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB]
205s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-2 [150 kB]
205s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB]
206s Preconfiguring packages ...
206s Fetched 361 MB in 6s (65.0 MB/s)
206s Selecting previously unselected package libisl23:amd64.
207s (Reading database ... 
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(Reading database ... 76968 files and directories currently installed.)
207s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ...
207s Unpacking libisl23:amd64 (0.27-1) ...
207s Selecting previously unselected package libmpc3:amd64.
207s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ...
207s Unpacking libmpc3:amd64 (1.3.1-1build2) ...
207s Selecting previously unselected package cpp-14-x86-64-linux-gnu.
207s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ...
207s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
207s Selecting previously unselected package cpp-14.
207s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ...
207s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
207s Selecting previously unselected package cpp-x86-64-linux-gnu.
207s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
207s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
207s Selecting previously unselected package cpp.
207s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ...
207s Unpacking cpp (4:14.2.0-1ubuntu1) ...
208s Selecting previously unselected package libcc1-0:amd64.
208s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ...
208s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ...
208s Selecting previously unselected package libgomp1:amd64.
208s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ...
208s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ...
208s Selecting previously unselected package libitm1:amd64.
208s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ...
208s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ...
208s Selecting previously unselected package libasan8:amd64.
208s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ...
208s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ...
208s Selecting previously unselected package liblsan0:amd64.
208s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ...
208s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ...
208s Selecting previously unselected package libtsan2:amd64.
208s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ...
208s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ...
208s Selecting previously unselected package libubsan1:amd64.
208s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ...
208s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ...
208s Selecting previously unselected package libhwasan0:amd64.
208s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ...
208s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ...
208s Selecting previously unselected package libquadmath0:amd64.
208s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ...
208s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ...
208s Selecting previously unselected package libgcc-14-dev:amd64.
208s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ...
208s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ...
209s Selecting previously unselected package gcc-14-x86-64-linux-gnu.
209s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ...
209s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
209s Selecting previously unselected package gcc-14.
209s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ...
209s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
209s Selecting previously unselected package gcc-x86-64-linux-gnu.
209s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
209s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
209s Selecting previously unselected package gcc.
209s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ...
209s Unpacking gcc (4:14.2.0-1ubuntu1) ...
209s Selecting previously unselected package libstdc++-14-dev:amd64.
209s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ...
209s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ...
210s Selecting previously unselected package g++-14-x86-64-linux-gnu.
210s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ...
210s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
210s Selecting previously unselected package g++-14.
210s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ...
210s Unpacking g++-14 (14.2.0-17ubuntu3) ...
210s Selecting previously unselected package g++-x86-64-linux-gnu.
210s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
210s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
210s Selecting previously unselected package g++.
210s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ...
210s Unpacking g++ (4:14.2.0-1ubuntu1) ...
210s Selecting previously unselected package build-essential.
210s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ...
210s Unpacking build-essential (12.10ubuntu1) ...
210s Selecting previously unselected package dctrl-tools.
210s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ...
210s Unpacking dctrl-tools (2.24-3build3) ...
210s Selecting previously unselected package fonts-dejavu-mono.
210s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ...
210s Unpacking fonts-dejavu-mono (2.37-8) ...
210s Selecting previously unselected package fonts-dejavu-core.
210s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ...
210s Unpacking fonts-dejavu-core (2.37-8) ...
210s Selecting previously unselected package fontconfig-config.
210s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ...
211s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
211s Selecting previously unselected package libfontconfig1:amd64.
211s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ...
211s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ...
211s Selecting previously unselected package fontconfig.
211s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ...
211s Unpacking fontconfig (2.15.0-2ubuntu1) ...
211s Selecting previously unselected package fonts-font-awesome.
211s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
211s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
211s Selecting previously unselected package fonts-glyphicons-halflings.
211s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
211s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
211s Selecting previously unselected package fonts-lmodern.
211s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ...
211s Unpacking fonts-lmodern (2.005-1) ...
211s Selecting previously unselected package fonts-mathjax.
211s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
211s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
211s Selecting previously unselected package libgfortran5:amd64.
211s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ...
211s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ...
211s Selecting previously unselected package libgfortran-14-dev:amd64.
211s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ...
211s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ...
211s Selecting previously unselected package gfortran-14-x86-64-linux-gnu.
211s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ...
211s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
211s Selecting previously unselected package gfortran-14.
211s Preparing to unpack .../039-gfortran-14_14.2.0-17ubuntu3_amd64.deb ...
211s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
211s Selecting previously unselected package gfortran-x86-64-linux-gnu.
211s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
211s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
212s Selecting previously unselected package gfortran.
212s Preparing to unpack .../041-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ...
212s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
212s Selecting previously unselected package icu-devtools.
212s Preparing to unpack .../042-icu-devtools_76.1-1ubuntu2_amd64.deb ...
212s Unpacking icu-devtools (76.1-1ubuntu2) ...
212s Selecting previously unselected package javascript-common.
212s Preparing to unpack .../043-javascript-common_12_all.deb ...
212s Unpacking javascript-common (12) ...
212s Selecting previously unselected package libio-string-perl.
212s Preparing to unpack .../044-libio-string-perl_1.08-4_all.deb ...
212s Unpacking libio-string-perl (1.08-4) ...
212s Selecting previously unselected package liblatex-tounicode-perl.
212s Preparing to unpack .../045-liblatex-tounicode-perl_0.55-1_all.deb ...
212s Unpacking liblatex-tounicode-perl (0.55-1) ...
212s Selecting previously unselected package libbibtex-parser-perl.
212s Preparing to unpack .../046-libbibtex-parser-perl_1.05+dfsg-1_all.deb ...
212s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ...
212s Selecting previously unselected package libblas3:amd64.
212s Preparing to unpack .../047-libblas3_3.12.1-2_amd64.deb ...
212s Unpacking libblas3:amd64 (3.12.1-2) ...
212s Selecting previously unselected package libblas-dev:amd64.
212s Preparing to unpack .../048-libblas-dev_3.12.1-2_amd64.deb ...
212s Unpacking libblas-dev:amd64 (3.12.1-2) ...
212s Selecting previously unselected package libboost1.83-dev:amd64.
212s Preparing to unpack .../049-libboost1.83-dev_1.83.0-4.1ubuntu2_amd64.deb ...
212s Unpacking libboost1.83-dev:amd64 (1.83.0-4.1ubuntu2) ...
215s Selecting previously unselected package libboost-dev:amd64.
215s Preparing to unpack .../050-libboost-dev_1.83.0.2ubuntu1_amd64.deb ...
215s Unpacking libboost-dev:amd64 (1.83.0.2ubuntu1) ...
215s Selecting previously unselected package libbz2-dev:amd64.
215s Preparing to unpack .../051-libbz2-dev_1.0.8-6_amd64.deb ...
215s Unpacking libbz2-dev:amd64 (1.0.8-6) ...
215s Selecting previously unselected package libpixman-1-0:amd64.
215s Preparing to unpack .../052-libpixman-1-0_0.44.0-3_amd64.deb ...
215s Unpacking libpixman-1-0:amd64 (0.44.0-3) ...
215s Selecting previously unselected package libxcb-render0:amd64.
215s Preparing to unpack .../053-libxcb-render0_1.17.0-2_amd64.deb ...
215s Unpacking libxcb-render0:amd64 (1.17.0-2) ...
215s Selecting previously unselected package libxcb-shm0:amd64.
215s Preparing to unpack .../054-libxcb-shm0_1.17.0-2_amd64.deb ...
215s Unpacking libxcb-shm0:amd64 (1.17.0-2) ...
215s Selecting previously unselected package libxrender1:amd64.
215s Preparing to unpack .../055-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ...
215s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ...
215s Selecting previously unselected package libcairo2:amd64.
215s Preparing to unpack .../056-libcairo2_1.18.2-2_amd64.deb ...
215s Unpacking libcairo2:amd64 (1.18.2-2) ...
215s Selecting previously unselected package libdatrie1:amd64.
215s Preparing to unpack .../057-libdatrie1_0.2.13-3build1_amd64.deb ...
215s Unpacking libdatrie1:amd64 (0.2.13-3build1) ...
215s Selecting previously unselected package libdeflate0:amd64.
215s Preparing to unpack .../058-libdeflate0_1.23-1_amd64.deb ...
215s Unpacking libdeflate0:amd64 (1.23-1) ...
215s Selecting previously unselected package libdeflate-dev:amd64.
215s Preparing to unpack .../059-libdeflate-dev_1.23-1_amd64.deb ...
215s Unpacking libdeflate-dev:amd64 (1.23-1) ...
215s Selecting previously unselected package libgraphite2-3:amd64.
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232s Setting up libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ...
232s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ...
232s Setting up libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ...
232s Setting up libsm6:amd64 (2:1.2.4-1) ...
232s Setting up cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
232s Setting up libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ...
232s Setting up fontconfig (2.15.0-2ubuntu1) ...
234s Regenerating fonts cache... done.
234s Setting up libxft2:amd64 (2.3.6-1build1) ...
234s Setting up libboost1.83-dev:amd64 (1.83.0-4.1ubuntu2) ...
234s Setting up libtk8.6:amd64 (8.6.16-1) ...
234s Setting up libpango-1.0-0:amd64 (1.56.2-1) ...
234s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ...
234s Setting up libcairo2:amd64 (1.18.2-2) ...
234s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ...
234s Setting up cpp (4:14.2.0-1ubuntu1) ...
234s Setting up libboost-dev:amd64 (1.83.0.2ubuntu1) ...
234s Setting up gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
234s Setting up libpangoft2-1.0-0:amd64 (1.56.2-1) ...
234s Setting up libpangocairo-1.0-0:amd64 (1.56.2-1) ...
234s Setting up libxmu6:amd64 (2:1.1.3-3build2) ...
234s Setting up gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
234s Setting up libxaw7:amd64 (2:1.0.16-1) ...
234s Setting up gcc-14 (14.2.0-17ubuntu3) ...
234s Setting up gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
234s Setting up r-base-core (4.4.3-1) ...
235s Creating config file /etc/R/Renviron with new version
235s Setting up r-cran-crayon (1.5.3-1) ...
235s Setting up r-cran-sourcetools (0.1.7-1-1) ...
235s Setting up r-cran-futile.options (1.0.1-3build1) ...
235s Setting up r-cran-lattice (0.22-6-1) ...
235s Setting up r-cran-ps (1.9.0-1) ...
235s Setting up g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
235s Setting up r-cran-formatr (1.14-2) ...
235s Setting up texlive-binaries (2024.20240313.70630+ds-6) ...
235s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
235s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
235s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
235s Setting up r-cran-commonmark (1.9.2-2) ...
235s Setting up g++-14 (14.2.0-17ubuntu3) ...
235s Setting up r-cran-r6 (2.6.1-1) ...
235s Setting up r-cran-pkgkitten (0.2.4-1) ...
235s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
235s Setting up texlive-base (2024.20250114-1) ...
236s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
236s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
236s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
236s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
237s Setting up r-cran-magrittr (2.0.3-1) ...
237s Setting up r-cran-rappdirs (0.3.3-1) ...
237s Setting up r-cran-littler (0.3.20-2) ...
237s Setting up r-cran-bh (1.84.0-1) ...
237s Setting up r-cran-fs (1.6.5+dfsg-1) ...
237s Setting up r-cran-rcpp (1.0.14-1) ...
237s Setting up r-cran-codetools (0.2-20-1) ...
237s Setting up r-cran-brio (1.1.5-1) ...
237s Setting up r-cran-diffobj (0.3.5-1) ...
237s Setting up r-bioc-biocgenerics (0.52.0-2) ...
237s Setting up r-cran-rlang (1.1.5-1) ...
237s Setting up r-cran-matrixstats (1.5.0-1) ...
237s Setting up littler (0.3.20-2) ...
237s Setting up r-bioc-matrixgenerics (1.18.1-1) ...
237s Setting up r-cran-xfun (0.51+dfsg-1) ...
237s Setting up r-cran-withr (3.0.2+dfsg-1) ...
237s Setting up r-cran-processx (3.8.6-1) ...
237s Setting up r-cran-mime (0.12-2) ...
237s Setting up r-cran-praise (1.0.0-4build1) ...
237s Setting up r-cran-base64enc (0.1-3-3) ...
237s Setting up r-cran-abind (1.4-8-1) ...
237s Setting up r-cran-digest (0.6.37-1) ...
237s Setting up r-cran-yaml (2.3.10-1) ...
237s Setting up r-cran-lambda.r (1.2.4-2build1) ...
237s Setting up r-cran-evaluate (1.0.3-1) ...
237s Setting up r-cran-highr (0.11+dfsg-1) ...
237s Setting up r-cran-snow (1:0.4.4-2) ...
237s Setting up r-cran-glue (1.8.0-1) ...
237s Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
237s Setting up r-cran-xtable (1:1.8-4-2) ...
237s Setting up r-cran-cli (3.6.4-1) ...
237s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
237s Setting up r-bioc-biocversion (3.20.0-2) ...
237s Setting up r-cran-rprojroot (2.0.4-2) ...
237s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ...
237s Setting up gcc (4:14.2.0-1ubuntu1) ...
237s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
237s Setting up r-cran-fastmap (1.2.0-1) ...
237s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
237s Setting up texlive-latex-base (2024.20250114-1) ...
237s Setting up r-cran-cpp11 (0.5.2-1) ...
237s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
237s Setting up r-cran-futile.logger (1.4.3-4build1) ...
237s Setting up r-cran-waldo (0.6.1-2) ...
237s Setting up r-cran-later (1.4.1+dfsg-1) ...
237s Setting up r-cran-matrix (1.7-3-1) ...
237s Setting up r-cran-htmltools (0.5.8.1-1) ...
237s Setting up r-cran-tinytex (0.56-1) ...
237s Setting up r-cran-knitr (1.49+dfsg-1) ...
237s Setting up g++ (4:14.2.0-1ubuntu1) ...
237s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
237s Setting up r-cran-cachem (1.1.0-1) ...
237s Setting up r-cran-sass (0.4.9+dfsg-1) ...
237s Setting up build-essential (12.10ubuntu1) ...
237s Setting up r-bioc-iranges (2.40.1-2) ...
237s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ...
237s Setting up r-bioc-biocparallel (1.40.0-2) ...
237s Setting up r-cran-callr (3.7.6-1) ...
237s Setting up r-cran-desc (1.4.3-1) ...
237s Setting up r-cran-fontawesome (0.5.3-1) ...
237s Setting up gfortran (4:14.2.0-1ubuntu1) ...
237s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
237s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
237s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
237s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
237s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
237s Setting up texlive-bibtex-extra (2024.20250114-1) ...
237s Setting up r-cran-memoise (2.0.1-1) ...
237s Setting up r-cran-promises (1.3.2+dfsg-1) ...
237s Setting up r-bioc-xvector (0.46.0-2) ...
237s Setting up r-cran-pkgbuild (1.4.6-1) ...
237s Setting up r-cran-pkgload (1.4.0-1) ...
237s Setting up r-base-dev (4.4.3-1) ...
237s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ...
237s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
237s Setting up r-cran-testthat (3.2.3-1) ...
237s Setting up r-cran-bslib (0.8.0+dfsg-1) ...
237s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
237s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ...
237s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
237s Setting up r-cran-rmarkdown (2.29+dfsg-1) ...
237s Setting up r-cran-bookdown (0.42+dfsg-1) ...
237s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ...
237s Processing triggers for libc-bin (2.41-1ubuntu2) ...
237s Processing triggers for man-db (2.13.0-1) ...
241s Processing triggers for install-info (7.1.1-1) ...
241s Processing triggers for tex-common (6.19) ...
241s Running updmap-sys. This may take some time... done.
242s Running mktexlsr /var/lib/texmf ... done.
242s Building format(s) --all.
280s 	This may take some time... done.
281s autopkgtest [22:05:38]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
281s autopkgtest [22:05:38]: test pkg-r-autopkgtest: [-----------------------
282s Test: Try to load the R library S4Arrays
282s 
282s R version 4.4.3 (2025-02-28) -- "Trophy Case"
282s Copyright (C) 2025 The R Foundation for Statistical Computing
282s Platform: x86_64-pc-linux-gnu
282s 
282s R is free software and comes with ABSOLUTELY NO WARRANTY.
282s You are welcome to redistribute it under certain conditions.
282s Type 'license()' or 'licence()' for distribution details.
282s 
282s R is a collaborative project with many contributors.
282s Type 'contributors()' for more information and
282s 'citation()' on how to cite R or R packages in publications.
282s 
282s Type 'demo()' for some demos, 'help()' for on-line help, or
282s 'help.start()' for an HTML browser interface to help.
282s Type 'q()' to quit R.
282s 
282s > library('S4Arrays')
282s Loading required package: Matrix
283s Loading required package: abind
283s Loading required package: BiocGenerics
283s 
283s Attaching package: ‘BiocGenerics’
283s 
283s The following objects are masked from ‘package:stats’:
283s 
283s     IQR, mad, sd, var, xtabs
283s 
283s The following objects are masked from ‘package:base’:
283s 
283s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
283s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
283s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
283s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
283s     Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff,
283s     table, tapply, union, unique, unsplit, which.max, which.min
283s 
283s Loading required package: S4Vectors
283s Loading required package: stats4
284s 
284s Attaching package: ‘S4Vectors’
284s 
284s The following objects are masked from ‘package:Matrix’:
284s 
284s     expand, unname
284s 
284s The following object is masked from ‘package:utils’:
284s 
284s     findMatches
284s 
284s The following objects are masked from ‘package:base’:
284s 
284s     expand.grid, I, unname
284s 
284s Loading required package: IRanges
286s > 
286s > 
286s 
286s Attaching package: ‘S4Arrays’
286s 
286s The following object is masked from ‘package:abind’:
286s 
286s     abind
286s 
286s The following object is masked from ‘package:base’:
286s 
286s     rowsum
286s 
286s Other tests are currently unsupported!
286s They will be progressively added.
286s autopkgtest [22:05:43]: test pkg-r-autopkgtest: -----------------------]
286s autopkgtest [22:05:43]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
286s pkg-r-autopkgtest    PASS
287s autopkgtest [22:05:44]: @@@@@@@@@@@@@@@@@@@@ summary
287s pkg-r-autopkgtest    PASS
302s nova [W] Skipping flock for amd64
302s Creating nova instance adt-plucky-amd64-r-bioc-s4arrays-20250315-220056-juju-7f2275-prod-proposed-migration-environment-2-d60a38ca-3d11-4358-8feb-09ce573939af from image adt/ubuntu-plucky-amd64-server-20250306.img (UUID 60d877d7-b74c-4f24-920d-f4570db0a338)...
302s nova [W] Timed out waiting for 699bdfd2-b068-411b-b6eb-dee861545cb8 to get deleted.