0s autopkgtest [22:00:43]: starting date and time: 2025-03-15 22:00:43+0000 0s autopkgtest [22:00:43]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [22:00:43]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1k4te6v1/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-rsubread --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-1.secgroup --name adt-plucky-amd64-r-bioc-rsubread-20250315-220043-juju-7f2275-prod-proposed-migration-environment-20-39359f62-3f4a-4a74-b2d7-04175524bca2 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 46s autopkgtest [22:01:29]: testbed dpkg architecture: amd64 46s autopkgtest [22:01:29]: testbed apt version: 2.9.31ubuntu1 47s autopkgtest [22:01:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup 47s autopkgtest [22:01:30]: testbed release detected to be: None 48s autopkgtest [22:01:31]: updating testbed package index (apt update) 48s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 48s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 48s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 48s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 48s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 48s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 49s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 49s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 49s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 49s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 49s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 49s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 49s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 49s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 49s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 49s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 49s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 49s Fetched 1265 kB in 1s (1435 kB/s) 50s Reading package lists... 51s Reading package lists... 51s Building dependency tree... 51s Reading state information... 51s Calculating upgrade... 51s Calculating upgrade... 52s The following package was automatically installed and is no longer required: 52s libnl-genl-3-200 52s Use 'sudo apt autoremove' to remove it. 52s The following NEW packages will be installed: 52s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 52s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 52s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 52s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 52s The following packages will be upgraded: 52s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 52s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 52s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 52s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 52s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 52s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 52s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 52s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 52s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 52s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 52s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 52s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 52s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 52s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 52s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 52s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 52s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 52s parted pci.ids pciutils pinentry-curses python-apt-common python3 52s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 52s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 52s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 52s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 52s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 52s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 52s xz-utils 52s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 52s Need to get 829 MB of archives. 52s After this operation, 325 MB of additional disk space will be used. 52s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 52s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 52s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 52s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 53s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 53s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 53s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 53s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 53s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 53s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 53s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 53s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 53s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 53s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 53s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 53s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 53s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 53s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 53s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 53s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 53s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 53s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 53s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 53s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 53s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 53s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 53s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 53s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 53s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 53s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 53s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 53s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 53s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 53s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 53s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 53s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 53s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 53s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 53s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 53s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 53s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 53s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 53s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 53s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 53s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 53s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 53s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 53s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 53s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 53s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 53s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 53s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 53s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 53s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 54s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 54s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 54s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 54s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 54s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 54s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 54s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 54s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 54s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 54s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 54s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 54s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 54s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 54s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 54s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 54s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 54s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 54s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 54s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 54s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 54s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 54s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 54s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 54s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 54s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 54s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 54s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 54s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 54s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 54s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 54s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 54s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 54s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 54s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 54s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 54s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 54s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 54s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 54s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 54s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 54s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 54s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 54s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 54s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 54s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 54s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 54s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 54s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 55s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 55s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 55s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 55s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 55s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 55s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 55s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 74s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 74s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 74s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 74s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 74s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 74s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 74s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 74s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 76s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 76s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 82s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 82s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 82s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 82s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 82s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 82s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 82s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 82s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 82s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 83s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 83s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 83s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 83s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 83s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 83s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 83s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 83s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 83s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 83s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 83s Preconfiguring packages ... 84s Fetched 829 MB in 31s (26.6 MB/s) 84s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 89s Preparing to unpack .../libaudit1_1%3a4.0.2-2ubuntu2_amd64.deb ... 89s Unpacking libaudit1:amd64 (1:4.0.2-2ubuntu2) over (1:4.0.2-2ubuntu1) ... 89s Setting up libaudit1:amd64 (1:4.0.2-2ubuntu2) ... 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 89s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu6_amd64.deb ... 89s Unpacking libseccomp2:amd64 (2.5.5-1ubuntu6) over (2.5.5-1ubuntu5) ... 89s Setting up libseccomp2:amd64 (2.5.5-1ubuntu6) ... 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 89s Preparing to unpack .../libselinux1_3.7-3ubuntu3_amd64.deb ... 89s Unpacking libselinux1:amd64 (3.7-3ubuntu3) over (3.7-3ubuntu2) ... 89s Setting up libselinux1:amd64 (3.7-3ubuntu3) ... 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 89s Preparing to unpack .../libapparmor1_4.1.0~beta5-0ubuntu8_amd64.deb ... 89s Unpacking libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) over (4.1.0~beta5-0ubuntu5) ... 89s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 89s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 89s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 89s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 89s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 89s Setting up apt (2.9.33) ... 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 90s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 90s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 90s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 90s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 90s Setting up python3-minimal (3.13.2-2) ... 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 90s Preparing to unpack .../0-python3_3.13.2-2_amd64.deb ... 90s Unpacking python3 (3.13.2-2) over (3.13.2-1) ... 90s Preparing to unpack .../1-libpython3.13_3.13.2-2_amd64.deb ... 90s Unpacking libpython3.13:amd64 (3.13.2-2) over (3.13.2-1) ... 91s Preparing to unpack .../2-media-types_13.0.0_all.deb ... 91s Unpacking media-types (13.0.0) over (12.0.0) ... 91s Preparing to unpack .../3-libncurses6_6.5+20250216-2_amd64.deb ... 91s Unpacking libncurses6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 91s Preparing to unpack .../4-libncursesw6_6.5+20250216-2_amd64.deb ... 91s Unpacking libncursesw6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 91s Preparing to unpack .../5-libtinfo6_6.5+20250216-2_amd64.deb ... 91s Unpacking libtinfo6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 91s Setting up libtinfo6:amd64 (6.5+20250216-2) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 91s Preparing to unpack .../0-libsqlite3-0_3.46.1-2_amd64.deb ... 91s Unpacking libsqlite3-0:amd64 (3.46.1-2) over (3.46.1-1) ... 91s Preparing to unpack .../1-python3.13_3.13.2-2_amd64.deb ... 91s Unpacking python3.13 (3.13.2-2) over (3.13.2-1) ... 91s Preparing to unpack .../2-python3.13-minimal_3.13.2-2_amd64.deb ... 91s Unpacking python3.13-minimal (3.13.2-2) over (3.13.2-1) ... 91s Preparing to unpack .../3-libpython3.13-minimal_3.13.2-2_amd64.deb ... 91s Unpacking libpython3.13-minimal:amd64 (3.13.2-2) over (3.13.2-1) ... 91s Preparing to unpack .../4-libpython3.13-stdlib_3.13.2-2_amd64.deb ... 91s Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 91s Preparing to unpack .../5-libpython3-stdlib_3.13.2-2_amd64.deb ... 91s Unpacking libpython3-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 91s Preparing to unpack .../6-rsync_3.4.1+ds1-3_amd64.deb ... 91s Unpacking rsync (3.4.1+ds1-3) over (3.4.1-0syncable1) ... 91s Selecting previously unselected package libdebuginfod-common. 91s Preparing to unpack .../7-libdebuginfod-common_0.192-4_all.deb ... 91s Unpacking libdebuginfod-common (0.192-4) ... 92s Preparing to unpack .../8-libsemanage-common_3.7-2.1build1_all.deb ... 92s Unpacking libsemanage-common (3.7-2.1build1) over (3.7-2.1) ... 92s Setting up libsemanage-common (3.7-2.1build1) ... 92s (Reading database ... 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over (0.21.0-2ubuntu1) ... 106s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 106s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 106s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 106s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 106s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 106s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 106s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 106s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 106s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 107s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 107s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 107s Setting up media-types (13.0.0) ... 107s Installing new version of config file /etc/mime.types ... 107s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 107s Setting up ubuntu-kernel-accessories (1.549) ... 107s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 107s Setting up pci.ids (0.0~2025.03.09-1) ... 107s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 107s Setting up apt-utils (2.9.33) ... 107s Setting up libdebuginfod-common (0.192-4) ... 107s Setting up exfatprogs (1.2.8-1) ... 107s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 107s Setting up bpftool (7.6.0+6.14.0-10.10) ... 107s Setting up libestr0:amd64 (0.1.11-2) ... 107s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 107s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 107s Setting up dosfstools (4.2-1.2) ... 107s Setting up rsyslog (8.2412.0-2ubuntu2) ... 107s info: The user `syslog' is already a member of `adm'. 108s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 108s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 108s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 108s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 108s Setting up systemd (257.3-1ubuntu3) ... 108s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 108s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 108s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 109s Setting up libparted2t64:amd64 (3.6-5) ... 109s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 109s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 109s Setting up linux-headers-generic (6.14.0-10.10) ... 109s Setting up libjemalloc2:amd64 (5.3.0-3) ... 109s Setting up locales (2.41-1ubuntu1) ... 109s Installing new version of config file /etc/locale.alias ... 110s Generating locales (this might take a while)... 111s en_US.UTF-8... done 111s Generation complete. 111s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 111s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 111s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 111s Installing new version of config file /etc/apparmor.d/fusermount3 ... 111s Installing new version of config file /etc/apparmor.d/lsusb ... 111s Installing new version of config file /etc/apparmor.d/openvpn ... 112s Reloading AppArmor profiles 114s Setting up libftdi1-2:amd64 (1.5-8build1) ... 114s Setting up libglib2.0-data (2.84.0-1) ... 114s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 114s Setting up libncurses6:amd64 (6.5+20250216-2) ... 114s Setting up strace (6.13+ds-1ubuntu1) ... 114s Setting up xz-utils (5.6.4-1) ... 114s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 115s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 115s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 115s Setting up udev (257.3-1ubuntu3) ... 115s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 118s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 118s Setting up libpci3:amd64 (1:3.13.0-2) ... 118s Setting up whiptail (0.52.24-4ubuntu2) ... 118s Setting up python-apt-common (2.9.9build1) ... 118s Setting up pnp.ids (0.393-3) ... 118s Setting up libnl-3-200:amd64 (3.7.0-1) ... 118s Setting up python3.13-minimal (3.13.2-2) ... 118s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 118s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 118s Setting up libc-dev-bin (2.41-1ubuntu1) ... 118s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 118s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 118s Setting up rsync (3.4.1+ds1-3) ... 119s rsync.service is a disabled or a static unit not running, not starting it. 119s Setting up python3.13-gdbm (3.13.2-2) ... 119s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 119s Setting up systemd-resolved (257.3-1ubuntu3) ... 120s Setting up initramfs-tools-bin (0.146ubuntu1) ... 120s Setting up ncurses-term (6.5+20250216-2) ... 120s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 120s Setting up libpython3.13:amd64 (3.13.2-2) ... 120s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 120s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 120s Setting up systemd-sysv (257.3-1ubuntu3) ... 120s Setting up linux-headers-virtual (6.14.0-10.10) ... 120s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 120s Setting up python3.13 (3.13.2-2) ... 121s Setting up htop (3.4.0-2) ... 121s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 123s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 123s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 123s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 123s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 123s Setting up parted (3.6-5) ... 123s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 123s Setting up python3 (3.13.2-2) ... 123s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 123s Setting up python3-markupsafe (2.1.5-1build4) ... 123s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 126s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 126s Setting up hwdata (0.393-3) ... 126s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 126s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 126s No schema files found: doing nothing. 126s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 126s Setting up linux-perf (6.14.0-10.10) ... 126s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 126s Setting up pciutils (1:3.13.0-2) ... 126s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 126s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 126s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 126s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 126s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 126s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 126s Setting up curl (8.12.1-3ubuntu1) ... 126s Setting up linux-image-virtual (6.14.0-10.10) ... 126s Setting up initramfs-tools-core (0.146ubuntu1) ... 126s Setting up linux-tools-common (6.14.0-10.10) ... 126s Setting up python3-systemd (235-1build6) ... 126s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 126s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 126s Setting up linux-image-generic (6.14.0-10.10) ... 126s Setting up python3-dbus (1.3.2-5build5) ... 126s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 126s Setting up initramfs-tools (0.146ubuntu1) ... 126s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 126s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 126s update-initramfs: deferring update (trigger activated) 126s Setting up linux-generic (6.14.0-10.10) ... 126s Setting up ubuntu-minimal (1.549) ... 126s Setting up python3-apt (2.9.9build1) ... 127s Setting up python3-bcrypt (4.2.0-2.1build1) ... 127s Setting up python3-yaml (6.0.2-1build2) ... 127s Setting up libfwupd3:amd64 (2.0.6-4) ... 127s Setting up python3-lazr.uri (1.0.6-6) ... 127s Setting up binutils (2.44-3ubuntu1) ... 127s Setting up ubuntu-standard (1.549) ... 127s Setting up cloud-init-base (25.1-0ubuntu3) ... 129s Setting up linux-virtual (6.14.0-10.10) ... 129s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 129s Setting up python3-gi (3.50.0-4build1) ... 129s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 129s Setting up fwupd (2.0.6-4) ... 129s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 129s fwupd.service is a disabled or a static unit not running, not starting it. 129s Setting up cloud-init (25.1-0ubuntu3) ... 129s Processing triggers for man-db (2.13.0-1) ... 131s Processing triggers for dbus (1.16.2-1ubuntu1) ... 131s Processing triggers for shared-mime-info (2.4-5) ... 131s Warning: program compiled against libxml 212 using older 209 132s Processing triggers for libc-bin (2.41-1ubuntu1) ... 132s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 132s /etc/kernel/postinst.d/initramfs-tools: 132s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 132s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 142s /etc/kernel/postinst.d/zz-update-grub: 142s Sourcing file `/etc/default/grub' 142s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 142s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 142s Generating grub configuration file ... 143s Found linux image: /boot/vmlinuz-6.14.0-10-generic 143s Found initrd image: /boot/initrd.img-6.14.0-10-generic 143s Found linux image: /boot/vmlinuz-6.12.0-16-generic 143s Found initrd image: /boot/initrd.img-6.12.0-16-generic 143s Found linux image: /boot/vmlinuz-6.11.0-8-generic 143s Found initrd image: /boot/initrd.img-6.11.0-8-generic 143s Warning: os-prober will not be executed to detect other bootable partitions. 143s Systems on them will not be added to the GRUB boot configuration. 143s Check GRUB_DISABLE_OS_PROBER documentation entry. 143s Adding boot menu entry for UEFI Firmware Settings ... 143s done 143s Processing triggers for initramfs-tools (0.146ubuntu1) ... 143s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 143s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 155s Reading package lists... 155s Building dependency tree... 155s Reading state information... 155s Solving dependencies... 155s The following packages will be REMOVED: 155s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 155s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 155s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 155s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 155s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 155s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 155s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 155s linux-tools-6.12.0-16-generic* 156s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 156s After this operation, 545 MB disk space will be freed. 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 156s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 156s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 156s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 156s Removing libpython3.12t64:amd64 (3.12.9-1) ... 156s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 156s Removing libnsl2:amd64 (1.3.0-3build3) ... 156s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 156s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 157s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 159s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 159s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 161s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 162s /etc/kernel/postrm.d/initramfs-tools: 162s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 162s /etc/kernel/postrm.d/zz-update-grub: 162s Sourcing file `/etc/default/grub' 162s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 162s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 162s Generating grub configuration file ... 162s Found linux image: /boot/vmlinuz-6.14.0-10-generic 162s Found initrd image: /boot/initrd.img-6.14.0-10-generic 162s Found linux image: /boot/vmlinuz-6.12.0-16-generic 162s Found initrd image: /boot/initrd.img-6.12.0-16-generic 162s Warning: os-prober will not be executed to detect other bootable partitions. 162s Systems on them will not be added to the GRUB boot configuration. 162s Check GRUB_DISABLE_OS_PROBER documentation entry. 162s Adding boot menu entry for UEFI Firmware Settings ... 162s done 162s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 163s W: Removing the running kernel 163s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 163s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 163s /etc/kernel/postrm.d/initramfs-tools: 163s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 163s /etc/kernel/postrm.d/zz-update-grub: 163s Sourcing file `/etc/default/grub' 163s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 163s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 163s Generating grub configuration file ... 163s Found linux image: /boot/vmlinuz-6.14.0-10-generic 163s Found initrd image: /boot/initrd.img-6.14.0-10-generic 163s Warning: os-prober will not be executed to detect other bootable partitions. 163s Systems on them will not be added to the GRUB boot configuration. 163s Check GRUB_DISABLE_OS_PROBER documentation entry. 163s Adding boot menu entry for UEFI Firmware Settings ... 163s done 163s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 163s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 165s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 165s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 165s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 165s Processing triggers for libc-bin (2.41-1ubuntu1) ... 165s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 165s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 165s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 165s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 165s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 165s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 165s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 165s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 165s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 166s autopkgtest [22:03:29]: upgrading testbed (apt dist-upgrade and autopurge) 166s Reading package lists... 166s Building dependency tree... 166s Reading state information... 166s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 166s Starting 2 pkgProblemResolver with broken count: 0 166s Done 167s Entering ResolveByKeep 167s 167s Calculating upgrade... 167s The following packages will be upgraded: 167s libc-bin libc-dev-bin libc6 libc6-dev locales 168s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 168s Need to get 10.5 MB of archives. 168s After this operation, 1024 B of additional disk space will be used. 168s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 168s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 168s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 168s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 168s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 169s Preconfiguring packages ... 169s Fetched 10.5 MB in 1s (9658 kB/s) 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 169s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 169s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 169s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 169s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 169s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 169s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 169s Setting up libc6:amd64 (2.41-1ubuntu2) ... 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 170s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 170s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 170s Setting up libc-bin (2.41-1ubuntu2) ... 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 170s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 170s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 170s Setting up locales (2.41-1ubuntu2) ... 171s Generating locales (this might take a while)... 172s en_US.UTF-8... done 172s Generation complete. 172s Setting up libc-dev-bin (2.41-1ubuntu2) ... 172s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 172s Processing triggers for man-db (2.13.0-1) ... 173s Processing triggers for systemd (257.3-1ubuntu3) ... 174s Reading package lists... 174s Building dependency tree... 174s Reading state information... 174s Starting pkgProblemResolver with broken count: 0 175s Starting 2 pkgProblemResolver with broken count: 0 175s Done 175s Solving dependencies... 175s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 175s autopkgtest [22:03:38]: rebooting testbed after setup commands that affected boot 199s autopkgtest [22:04:02]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 201s autopkgtest [22:04:04]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rsubread 204s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rsubread 2.20.0-2 (dsc) [2120 B] 204s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rsubread 2.20.0-2 (tar) [13.6 MB] 204s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rsubread 2.20.0-2 (diff) [4324 B] 204s gpgv: Signature made Sat Jan 11 17:13:01 2025 UTC 204s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 204s gpgv: issuer "crusoe@debian.org" 204s gpgv: Can't check signature: No public key 204s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rsubread_2.20.0-2.dsc: no acceptable signature found 205s autopkgtest [22:04:08]: testing package r-bioc-rsubread version 2.20.0-2 205s autopkgtest [22:04:08]: build not needed 208s autopkgtest [22:04:11]: test pkg-r-autopkgtest: preparing testbed 208s Reading package lists... 209s Building dependency tree... 209s Reading state information... 209s Starting pkgProblemResolver with broken count: 0 209s Starting 2 pkgProblemResolver with broken count: 0 209s Done 209s The following NEW packages will be installed: 209s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 209s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 209s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 209s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 209s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8 209s libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev 209s libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 209s libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 209s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 209s libjpeg8-dev liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 209s libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 209s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 209s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 209s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data 209s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 209s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 209s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 209s r-bioc-biocgenerics r-bioc-rsubread r-cran-lattice r-cran-matrix unzip 209s x11-common xdg-utils zip zlib1g-dev 210s 0 upgraded, 103 newly installed, 0 to remove and 0 not upgraded. 210s Need to get 161 MB of archives. 210s After this operation, 498 MB of additional disk space will be used. 210s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 210s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 210s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 211s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 211s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 211s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 211s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 211s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 211s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 211s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 211s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 211s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 211s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 211s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 211s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 211s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 211s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 212s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 212s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 212s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 212s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 212s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 213s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 213s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 213s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 213s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 213s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 213s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 213s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 213s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 213s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 213s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 213s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 213s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 213s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 214s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 214s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 214s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 214s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 214s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 214s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 214s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 214s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 214s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 214s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 214s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 214s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 214s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 214s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 214s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 214s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 214s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 214s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 214s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 214s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 215s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 215s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 215s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 215s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 215s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 215s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 215s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 215s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 215s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 215s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 215s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 215s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 215s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 215s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 215s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 215s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 215s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 215s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 215s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 215s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 215s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 215s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 215s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 215s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 215s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 215s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 215s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 215s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 215s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 215s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 215s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 215s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 215s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 215s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 215s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 215s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 215s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 215s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 217s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 217s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 217s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 217s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 217s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 217s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 217s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 217s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 217s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 218s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rsubread amd64 2.20.0-2 [10.8 MB] 219s Preconfiguring packages ... 219s Fetched 161 MB in 9s (18.3 MB/s) 219s Selecting previously unselected package libisl23:amd64. 219s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 219s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 219s Unpacking libisl23:amd64 (0.27-1) ... 219s Selecting previously unselected package libmpc3:amd64. 219s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 219s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 219s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 219s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 219s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 219s Selecting previously unselected package cpp-14. 219s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 219s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 219s Selecting previously unselected package cpp-x86-64-linux-gnu. 219s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 219s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 219s Selecting previously unselected package cpp. 219s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 219s Unpacking cpp (4:14.2.0-1ubuntu1) ... 219s Selecting previously unselected package libcc1-0:amd64. 219s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 219s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 219s Selecting previously unselected package libgomp1:amd64. 219s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 219s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 219s Selecting previously unselected package libitm1:amd64. 219s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 219s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 219s Selecting previously unselected package libasan8:amd64. 219s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 219s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 219s Selecting previously unselected package liblsan0:amd64. 219s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 219s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 219s Selecting previously unselected package libtsan2:amd64. 219s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 219s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 220s Selecting previously unselected package libubsan1:amd64. 220s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 220s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 220s Selecting previously unselected package libhwasan0:amd64. 220s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 220s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 220s Selecting previously unselected package libquadmath0:amd64. 220s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 220s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 220s Selecting previously unselected package libgcc-14-dev:amd64. 220s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 220s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 220s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 220s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 220s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 220s Selecting previously unselected package gcc-14. 220s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 220s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 220s Selecting previously unselected package gcc-x86-64-linux-gnu. 220s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 220s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 220s Selecting previously unselected package gcc. 220s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 220s Unpacking gcc (4:14.2.0-1ubuntu1) ... 220s Selecting previously unselected package libstdc++-14-dev:amd64. 220s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 220s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 220s Selecting previously unselected package g++-14-x86-64-linux-gnu. 220s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 220s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 221s Selecting previously unselected package g++-14. 221s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ... 221s Unpacking g++-14 (14.2.0-17ubuntu3) ... 221s Selecting previously unselected package g++-x86-64-linux-gnu. 221s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 221s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 221s Selecting previously unselected package g++. 221s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 221s Unpacking g++ (4:14.2.0-1ubuntu1) ... 221s Selecting previously unselected package build-essential. 221s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 221s Unpacking build-essential (12.10ubuntu1) ... 221s Selecting previously unselected package dctrl-tools. 221s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 221s Unpacking dctrl-tools (2.24-3build3) ... 221s Selecting previously unselected package fonts-dejavu-mono. 221s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 221s Unpacking fonts-dejavu-mono (2.37-8) ... 221s Selecting previously unselected package fonts-dejavu-core. 221s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 221s Unpacking fonts-dejavu-core (2.37-8) ... 221s Selecting previously unselected package fontconfig-config. 221s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 221s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 221s Selecting previously unselected package libfontconfig1:amd64. 221s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 221s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 221s Selecting previously unselected package fontconfig. 221s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 221s Unpacking fontconfig (2.15.0-2ubuntu1) ... 221s Selecting previously unselected package libgfortran5:amd64. 221s Preparing to unpack .../032-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 221s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 221s Selecting previously unselected package libgfortran-14-dev:amd64. 221s Preparing to unpack .../033-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 221s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 221s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 221s Preparing to unpack .../034-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 221s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 221s Selecting previously unselected package gfortran-14. 221s Preparing to unpack .../035-gfortran-14_14.2.0-17ubuntu3_amd64.deb ... 221s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 221s Selecting previously unselected package gfortran-x86-64-linux-gnu. 221s Preparing to unpack .../036-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 221s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 221s Selecting previously unselected package gfortran. 222s Preparing to unpack .../037-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 222s Unpacking 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to unpack .../080-libsm6_2%3a1.2.4-1_amd64.deb ... 223s Unpacking libsm6:amd64 (2:1.2.4-1) ... 223s Selecting previously unselected package libtcl8.6:amd64. 223s Preparing to unpack .../081-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 223s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 223s Selecting previously unselected package libjbig0:amd64. 223s Preparing to unpack .../082-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 223s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 223s Selecting previously unselected package libwebp7:amd64. 223s Preparing to unpack .../083-libwebp7_1.5.0-0.1_amd64.deb ... 223s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 223s Selecting previously unselected package libtiff6:amd64. 223s Preparing to unpack .../084-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 223s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 223s Selecting previously unselected package libxft2:amd64. 223s Preparing to unpack .../085-libxft2_2.3.6-1build1_amd64.deb ... 223s Unpacking libxft2:amd64 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Unpacking r-bioc-rsubread (2.20.0-2) ... 225s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 225s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 225s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 225s Setting up libncurses-dev:amd64 (6.5+20250216-2) ... 225s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 225s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 225s Setting up libdatrie1:amd64 (0.2.13-3build1) ... 225s Setting up libxcb-render0:amd64 (1.17.0-2) ... 225s Setting up unzip (6.0-28ubuntu6) ... 225s Setting up x11-common (1:7.7+23ubuntu3) ... 225s Setting up libdeflate0:amd64 (1.23-1) ... 225s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 225s Setting up libreadline-dev:amd64 (8.2-6) ... 225s Setting up libgomp1:amd64 (15-20250222-0ubuntu1) ... 225s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 225s Setting up libpcre2-16-0:amd64 (10.45-1) ... 225s Setting up zip (3.0-14ubuntu2) ... 225s Setting up libpcre2-32-0:amd64 (10.45-1) ... 225s Setting up libblas3:amd64 (3.12.1-2) ... 225s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 225s Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 225s Setting up libpkgconf3:amd64 (1.8.1-4) ... 225s Setting up libquadmath0:amd64 (15-20250222-0ubuntu1) ... 225s Setting up fonts-dejavu-mono (2.37-8) ... 225s Setting up libmpc3:amd64 (1.3.1-1build2) ... 225s Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... 225s Setting up icu-devtools (76.1-1ubuntu2) ... 225s Setting up fonts-dejavu-core (2.37-8) ... 225s Setting up pkgconf-bin (1.8.1-4) ... 225s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 225s Setting up libgfortran5:amd64 (15-20250222-0ubuntu1) ... 225s Setting up libwebp7:amd64 (1.5.0-0.1) ... 225s Setting up liblzma-dev:amd64 (5.6.4-1) ... 225s Setting up libubsan1:amd64 (15-20250222-0ubuntu1) ... 225s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 225s Setting up libpcre2-posix3:amd64 (10.45-1) ... 225s Setting up libhwasan0:amd64 (15-20250222-0ubuntu1) ... 225s Setting up libasan8:amd64 (15-20250222-0ubuntu1) ... 225s Setting up libharfbuzz0b:amd64 (10.2.0-1) ... 225s Setting up libthai-data (0.1.29-2build1) ... 225s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 225s Setting up libpaper2:amd64 (2.2.5-0.3) ... 225s Setting up libtsan2:amd64 (15-20250222-0ubuntu1) ... 225s Setting up libisl23:amd64 (0.27-1) ... 225s Setting up libdeflate-dev:amd64 (1.23-1) ... 225s Setting up libicu-dev:amd64 (76.1-1ubuntu2) ... 225s Setting up xdg-utils (1.2.1-2ubuntu1) ... 225s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 225s Setting up libcc1-0:amd64 (15-20250222-0ubuntu1) ... 225s Setting up liblsan0:amd64 (15-20250222-0ubuntu1) ... 225s Setting up libblas-dev:amd64 (3.12.1-2) ... 225s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 225s Setting up dctrl-tools (2.24-3build3) ... 225s Setting up libitm1:amd64 (15-20250222-0ubuntu1) ... 225s Setting up libbz2-dev:amd64 (1.0.8-6) ... 225s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 225s Setting up libice6:amd64 (2:1.1.1-1) ... 225s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 225s Setting up liblapack3:amd64 (3.12.1-2) ... 225s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 225s Setting up libpcre2-dev:amd64 (10.45-1) ... 225s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 225s Setting up libpng-dev:amd64 (1.6.47-1) ... 225s Setting up libpaper-utils (2.2.5-0.3) ... 225s Setting up pkgconf:amd64 (1.8.1-4) ... 225s Setting up libthai0:amd64 (0.1.29-2build1) ... 225s Setting up liblapack-dev:amd64 (3.12.1-2) ... 225s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 225s Setting up cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 225s Setting up cpp-14 (14.2.0-17ubuntu3) ... 225s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 225s Setting up libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 225s Setting up libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 225s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 225s Setting up libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 225s Setting up libsm6:amd64 (2:1.2.4-1) ... 225s Setting up cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 225s Setting up libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 225s Setting up fontconfig (2.15.0-2ubuntu1) ... 227s Regenerating fonts cache... done. 227s Setting up libxft2:amd64 (2.3.6-1build1) ... 227s Setting up libtk8.6:amd64 (8.6.16-1) ... 227s Setting up libpango-1.0-0:amd64 (1.56.2-1) ... 227s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 227s Setting up libcairo2:amd64 (1.18.2-2) ... 227s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ... 227s Setting up cpp (4:14.2.0-1ubuntu1) ... 227s Setting up gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 227s Setting up libpangoft2-1.0-0:amd64 (1.56.2-1) ... 227s Setting up libpangocairo-1.0-0:amd64 (1.56.2-1) ... 227s Setting up gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 227s Setting up gcc-14 (14.2.0-17ubuntu3) ... 227s Setting up gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 227s Setting up r-base-core (4.4.3-1) ... 228s Creating config file /etc/R/Renviron with new version 228s Setting up r-cran-lattice (0.22-6-1) ... 228s Setting up g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 228s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 228s Setting up g++-14 (14.2.0-17ubuntu3) ... 228s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 228s Setting up r-bioc-biocgenerics (0.52.0-2) ... 228s Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 228s Setting up gcc (4:14.2.0-1ubuntu1) ... 228s Setting up r-cran-matrix (1.7-3-1) ... 228s Setting up g++ (4:14.2.0-1ubuntu1) ... 228s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 228s Setting up r-bioc-rsubread (2.20.0-2) ... 228s Setting up build-essential (12.10ubuntu1) ... 228s Setting up gfortran (4:14.2.0-1ubuntu1) ... 228s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 228s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 228s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 228s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 228s Setting up r-base-dev (4.4.3-1) ... 228s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 228s Processing triggers for libc-bin (2.41-1ubuntu2) ... 228s Processing triggers for man-db (2.13.0-1) ... 229s Processing triggers for install-info (7.1.1-1) ... 231s autopkgtest [22:04:34]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 231s autopkgtest [22:04:34]: test pkg-r-autopkgtest: [----------------------- 231s Test: Try to load the R library Rsubread 231s 231s R version 4.4.3 (2025-02-28) -- "Trophy Case" 231s Copyright (C) 2025 The R Foundation for Statistical Computing 231s Platform: x86_64-pc-linux-gnu 231s 231s R is free software and comes with ABSOLUTELY NO WARRANTY. 231s You are welcome to redistribute it under certain conditions. 231s Type 'license()' or 'licence()' for distribution details. 231s 231s R is a collaborative project with many contributors. 231s Type 'contributors()' for more information and 231s 'citation()' on how to cite R or R packages in publications. 231s 231s Type 'demo()' for some demos, 'help()' for on-line help, or 231s 'help.start()' for an HTML browser interface to help. 231s Type 'q()' to quit R. 231s 231s > library('Rsubread') 232s > 232s > 232s Other tests are currently unsupported! 232s They will be progressively added. 232s autopkgtest [22:04:35]: test pkg-r-autopkgtest: -----------------------] 233s pkg-r-autopkgtest PASS 233s autopkgtest [22:04:36]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 233s autopkgtest [22:04:36]: @@@@@@@@@@@@@@@@@@@@ summary 233s pkg-r-autopkgtest PASS 250s nova [W] Skipping flock for amd64 250s Creating nova instance adt-plucky-amd64-r-bioc-rsubread-20250315-220043-juju-7f2275-prod-proposed-migration-environment-20-39359f62-3f4a-4a74-b2d7-04175524bca2 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 250s nova [W] Timed out waiting for 5d401f01-d9e1-4004-a736-41743a340f60 to get deleted.