0s autopkgtest [22:00:28]: starting date and time: 2025-03-15 22:00:28+0000 0s autopkgtest [22:00:28]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [22:00:28]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1s6h2ohu/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-rsamtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-29.secgroup --name adt-plucky-amd64-r-bioc-rsamtools-20250315-220028-juju-7f2275-prod-proposed-migration-environment-2-92b0fa03-7c06-4af7-afce-49af8c3d4697 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 356s autopkgtest [22:06:24]: testbed dpkg architecture: amd64 356s autopkgtest [22:06:24]: testbed apt version: 2.9.31ubuntu1 356s autopkgtest [22:06:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 356s autopkgtest [22:06:24]: testbed release detected to be: None 357s autopkgtest [22:06:25]: updating testbed package index (apt update) 358s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 358s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 358s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 358s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 358s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 358s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 358s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 358s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 358s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 358s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 358s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 358s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 358s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 358s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 358s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 358s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 358s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 359s Fetched 1265 kB in 1s (1416 kB/s) 360s Reading package lists... 361s Reading package lists... 361s Building dependency tree... 361s Reading state information... 362s Calculating upgrade... 362s Calculating upgrade... 362s The following package was automatically installed and is no longer required: 362s libnl-genl-3-200 362s Use 'sudo apt autoremove' to remove it. 362s The following NEW packages will be installed: 362s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 362s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 362s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 362s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 362s The following packages will be upgraded: 362s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 362s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 362s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 362s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 362s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 362s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 362s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 362s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 363s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 363s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 363s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 363s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 363s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 363s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 363s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 363s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 363s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 363s parted pci.ids pciutils pinentry-curses python-apt-common python3 363s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 363s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 363s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 363s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 363s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 363s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 363s xz-utils 363s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 363s Need to get 829 MB of archives. 363s After this operation, 325 MB of additional disk space will be used. 363s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 363s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 363s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 364s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 364s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 365s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 365s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 365s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 365s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 365s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 365s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 365s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 365s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 365s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 365s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 365s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 365s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 365s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 365s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 365s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 365s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 365s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 366s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 366s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 366s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 366s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 366s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 366s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 366s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 366s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 366s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 366s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 366s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 366s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 366s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 366s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 366s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 366s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 366s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 366s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 366s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 366s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 366s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 366s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 366s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 366s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 366s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 366s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 366s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 366s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 366s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 366s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 366s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 366s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 366s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 366s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 366s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 366s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 366s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 366s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 366s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 366s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 366s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 366s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 366s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 366s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 366s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 366s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 366s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 366s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 366s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 367s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 367s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 367s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 367s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 367s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 367s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 367s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 367s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 367s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 367s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 367s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 367s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 367s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 367s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 367s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 367s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 367s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 367s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 367s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 367s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 367s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 367s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 367s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 367s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 367s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 367s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 367s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 367s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 367s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 367s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 367s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 368s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 368s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 368s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 369s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 369s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 369s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 369s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 393s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 393s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 393s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 393s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 393s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 393s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 393s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 393s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 395s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 396s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 400s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 400s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 400s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 400s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 400s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 400s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 401s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 401s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 401s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 401s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 401s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 401s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 401s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 401s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 401s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 401s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 401s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 401s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 401s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 402s Preconfiguring packages 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.../23-parted_3.6-5_amd64.deb ... 414s Unpacking parted (3.6-5) over (3.6-4build1) ... 414s Preparing to unpack .../24-libparted2t64_3.6-5_amd64.deb ... 414s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 414s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 414s Unpacking libparted2t64:amd64 (3.6-5) over (3.6-4build1) ... 414s Preparing to unpack .../25-pci.ids_0.0~2025.03.09-1_all.deb ... 414s Unpacking pci.ids (0.0~2025.03.09-1) over (0.0~2025.02.12-1) ... 414s Preparing to unpack .../26-pciutils_1%3a3.13.0-2_amd64.deb ... 414s Unpacking pciutils (1:3.13.0-2) over (1:3.13.0-1) ... 414s Preparing to unpack .../27-libpci3_1%3a3.13.0-2_amd64.deb ... 414s Unpacking libpci3:amd64 (1:3.13.0-2) over (1:3.13.0-1) ... 414s Preparing to unpack .../28-strace_6.13+ds-1ubuntu1_amd64.deb ... 414s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 414s Preparing to unpack .../29-xz-utils_5.6.4-1_amd64.deb ... 414s Unpacking xz-utils (5.6.4-1) over (5.6.3-1) ... 414s Preparing to unpack .../30-ubuntu-standard_1.549_amd64.deb ... 414s Unpacking ubuntu-standard (1.549) over (1.548) ... 415s Preparing to unpack .../31-libgprofng0_2.44-3ubuntu1_amd64.deb ... 415s Unpacking libgprofng0:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 415s Preparing to unpack .../32-libctf0_2.44-3ubuntu1_amd64.deb ... 415s Unpacking libctf0:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 415s Preparing to unpack .../33-libctf-nobfd0_2.44-3ubuntu1_amd64.deb ... 415s Unpacking libctf-nobfd0:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 415s Preparing to unpack .../34-binutils-x86-64-linux-gnu_2.44-3ubuntu1_amd64.deb ... 415s Unpacking binutils-x86-64-linux-gnu (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 415s Preparing to unpack .../35-libbinutils_2.44-3ubuntu1_amd64.deb ... 415s Unpacking libbinutils:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 415s Preparing to unpack .../36-binutils_2.44-3ubuntu1_amd64.deb ... 415s Unpacking binutils (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 415s Preparing to unpack .../37-binutils-common_2.44-3ubuntu1_amd64.deb ... 415s Unpacking binutils-common:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 415s Preparing to unpack .../38-libsframe1_2.44-3ubuntu1_amd64.deb ... 415s Unpacking libsframe1:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 415s Preparing to unpack .../39-hwdata_0.393-3_all.deb ... 415s Unpacking hwdata (0.393-3) over (0.392-1) ... 415s Selecting previously unselected package pnp.ids. 415s Preparing to unpack .../40-pnp.ids_0.393-3_all.deb ... 415s Unpacking pnp.ids (0.393-3) ... 415s Preparing to unpack .../41-linux-tools-common_6.14.0-10.10_all.deb ... 415s Unpacking linux-tools-common (6.14.0-10.10) over (6.12.0-16.16) ... 415s Selecting previously unselected package bpftool. 415s Preparing to unpack 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.../56-initramfs-tools_0.146ubuntu1_all.deb ... 420s Unpacking initramfs-tools (0.146ubuntu1) over (0.145ubuntu3) ... 420s Preparing to unpack .../57-initramfs-tools-core_0.146ubuntu1_all.deb ... 420s Unpacking initramfs-tools-core (0.146ubuntu1) over (0.145ubuntu3) ... 420s Preparing to unpack .../58-initramfs-tools-bin_0.146ubuntu1_amd64.deb ... 420s Unpacking initramfs-tools-bin (0.146ubuntu1) over (0.145ubuntu3) ... 420s Selecting previously unselected package libdebuginfod1t64:amd64. 420s Preparing to unpack .../59-libdebuginfod1t64_0.192-4_amd64.deb ... 420s Unpacking libdebuginfod1t64:amd64 (0.192-4) ... 420s Preparing to unpack .../60-libftdi1-2_1.5-8build1_amd64.deb ... 420s Unpacking libftdi1-2:amd64 (1.5-8build1) over (1.5-8) ... 420s Preparing to unpack .../61-libgpgme11t64_1.24.2-1ubuntu2_amd64.deb ... 420s Unpacking libgpgme11t64:amd64 (1.24.2-1ubuntu2) over (1.24.2-1ubuntu1) ... 420s Preparing to unpack .../62-libjemalloc2_5.3.0-3_amd64.deb ... 420s Unpacking 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(1.0.6-6) over (1.0.6-5) ... 427s Preparing to unpack .../79-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ... 427s Unpacking python3-rpds-py (0.21.0-2ubuntu2) over (0.21.0-2ubuntu1) ... 427s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 427s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 427s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 427s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 427s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 427s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 427s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 427s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 427s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 427s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 428s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 428s Setting up media-types (13.0.0) ... 428s Installing new version of config file /etc/mime.types ... 428s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 428s Setting up ubuntu-kernel-accessories (1.549) ... 428s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 428s Setting up pci.ids (0.0~2025.03.09-1) ... 428s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 428s Setting up apt-utils (2.9.33) ... 428s Setting up libdebuginfod-common (0.192-4) ... 428s Setting up exfatprogs (1.2.8-1) ... 428s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 428s Setting up bpftool (7.6.0+6.14.0-10.10) ... 428s Setting up libestr0:amd64 (0.1.11-2) ... 428s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 428s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 428s Setting up dosfstools (4.2-1.2) ... 428s Setting up rsyslog (8.2412.0-2ubuntu2) ... 428s info: The user `syslog' is already a member of `adm'. 429s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 429s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 429s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 429s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 429s Setting up systemd (257.3-1ubuntu3) ... 429s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 429s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 429s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 430s Setting up libparted2t64:amd64 (3.6-5) ... 430s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 430s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 430s Setting up linux-headers-generic (6.14.0-10.10) ... 430s Setting up libjemalloc2:amd64 (5.3.0-3) ... 430s Setting up locales (2.41-1ubuntu1) ... 430s Installing new version of config file /etc/locale.alias ... 431s Generating locales (this might take a while)... 432s en_US.UTF-8... done 432s Generation complete. 432s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 432s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 432s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 432s Installing new version of config file /etc/apparmor.d/fusermount3 ... 432s Installing new version of config file /etc/apparmor.d/lsusb ... 432s Installing new version of config file /etc/apparmor.d/openvpn ... 433s Reloading AppArmor profiles 435s Setting up libftdi1-2:amd64 (1.5-8build1) ... 435s Setting up libglib2.0-data (2.84.0-1) ... 435s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 435s Setting up libncurses6:amd64 (6.5+20250216-2) ... 435s Setting up strace (6.13+ds-1ubuntu1) ... 435s Setting up xz-utils (5.6.4-1) ... 435s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 436s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 436s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 436s Setting up udev (257.3-1ubuntu3) ... 437s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 439s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 439s Setting up libpci3:amd64 (1:3.13.0-2) ... 439s Setting up whiptail (0.52.24-4ubuntu2) ... 439s Setting up python-apt-common (2.9.9build1) ... 439s Setting up pnp.ids (0.393-3) ... 439s Setting up libnl-3-200:amd64 (3.7.0-1) ... 439s Setting up python3.13-minimal (3.13.2-2) ... 440s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 440s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 440s Setting up libc-dev-bin (2.41-1ubuntu1) ... 440s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 440s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 440s Setting up rsync (3.4.1+ds1-3) ... 441s rsync.service is a disabled or a static unit not running, not starting it. 441s Setting up python3.13-gdbm (3.13.2-2) ... 441s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 441s Setting up systemd-resolved (257.3-1ubuntu3) ... 441s Setting up initramfs-tools-bin (0.146ubuntu1) ... 441s Setting up ncurses-term (6.5+20250216-2) ... 441s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 441s Setting up libpython3.13:amd64 (3.13.2-2) ... 441s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 441s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 441s Setting up systemd-sysv (257.3-1ubuntu3) ... 441s Setting up linux-headers-virtual (6.14.0-10.10) ... 441s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 441s Setting up python3.13 (3.13.2-2) ... 442s Setting up htop (3.4.0-2) ... 442s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 444s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 444s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 444s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 444s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 444s Setting up parted (3.6-5) ... 444s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 444s Setting up python3 (3.13.2-2) ... 445s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 445s Setting up python3-markupsafe (2.1.5-1build4) ... 445s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 447s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 447s Setting up hwdata (0.393-3) ... 447s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 447s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 447s No schema files found: doing nothing. 447s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 447s Setting up linux-perf (6.14.0-10.10) ... 447s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 447s Setting up pciutils (1:3.13.0-2) ... 447s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 447s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 447s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 447s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 448s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 448s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 448s Setting up curl (8.12.1-3ubuntu1) ... 448s Setting up linux-image-virtual (6.14.0-10.10) ... 448s Setting up initramfs-tools-core (0.146ubuntu1) ... 448s Setting up linux-tools-common (6.14.0-10.10) ... 448s Setting up python3-systemd (235-1build6) ... 448s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 448s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 448s Setting up linux-image-generic (6.14.0-10.10) ... 448s Setting up python3-dbus (1.3.2-5build5) ... 448s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 448s Setting up initramfs-tools (0.146ubuntu1) ... 448s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 448s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 448s update-initramfs: deferring update (trigger activated) 448s Setting up linux-generic (6.14.0-10.10) ... 448s Setting up ubuntu-minimal (1.549) ... 448s Setting up python3-apt (2.9.9build1) ... 448s Setting up python3-bcrypt (4.2.0-2.1build1) ... 448s Setting up python3-yaml (6.0.2-1build2) ... 448s Setting up libfwupd3:amd64 (2.0.6-4) ... 448s Setting up python3-lazr.uri (1.0.6-6) ... 448s Setting up binutils (2.44-3ubuntu1) ... 448s Setting up ubuntu-standard (1.549) ... 448s Setting up cloud-init-base (25.1-0ubuntu3) ... 450s Setting up linux-virtual (6.14.0-10.10) ... 450s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 450s Setting up python3-gi (3.50.0-4build1) ... 450s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 450s Setting up fwupd (2.0.6-4) ... 451s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 451s fwupd.service is a disabled or a static unit not running, not starting it. 451s Setting up cloud-init (25.1-0ubuntu3) ... 451s Processing triggers for man-db (2.13.0-1) ... 453s Processing triggers for dbus (1.16.2-1ubuntu1) ... 453s Processing triggers for shared-mime-info (2.4-5) ... 453s Warning: program compiled against libxml 212 using older 209 453s Processing triggers for libc-bin (2.41-1ubuntu1) ... 453s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 453s /etc/kernel/postinst.d/initramfs-tools: 453s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 453s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 464s /etc/kernel/postinst.d/zz-update-grub: 464s Sourcing file `/etc/default/grub' 464s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 464s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 464s Generating grub configuration file ... 464s Found linux image: /boot/vmlinuz-6.14.0-10-generic 464s Found initrd image: /boot/initrd.img-6.14.0-10-generic 465s Found linux image: /boot/vmlinuz-6.12.0-16-generic 465s Found initrd image: /boot/initrd.img-6.12.0-16-generic 465s Found linux image: /boot/vmlinuz-6.11.0-8-generic 465s Found initrd image: /boot/initrd.img-6.11.0-8-generic 465s Warning: os-prober will not be executed to detect other bootable partitions. 465s Systems on them will not be added to the GRUB boot configuration. 465s Check GRUB_DISABLE_OS_PROBER documentation entry. 465s Adding boot menu entry for UEFI Firmware Settings ... 465s done 465s Processing triggers for initramfs-tools (0.146ubuntu1) ... 465s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 465s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 477s Reading package lists... 478s Building dependency tree... 478s Reading state information... 478s Solving dependencies... 478s The following packages will be REMOVED: 478s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 478s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 478s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 478s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 478s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 478s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 478s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 478s linux-tools-6.12.0-16-generic* 478s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 478s After this operation, 545 MB disk space will be freed. 479s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 479s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 479s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 479s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 479s Removing libpython3.12t64:amd64 (3.12.9-1) ... 479s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 479s Removing libnsl2:amd64 (1.3.0-3build3) ... 479s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 479s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 479s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 482s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 482s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 484s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 485s /etc/kernel/postrm.d/initramfs-tools: 485s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 485s /etc/kernel/postrm.d/zz-update-grub: 485s Sourcing file `/etc/default/grub' 485s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 485s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 485s Generating grub configuration file ... 485s Found linux image: /boot/vmlinuz-6.14.0-10-generic 485s Found initrd image: /boot/initrd.img-6.14.0-10-generic 485s Found linux image: /boot/vmlinuz-6.12.0-16-generic 485s Found initrd image: /boot/initrd.img-6.12.0-16-generic 486s Warning: os-prober will not be executed to detect other bootable partitions. 486s Systems on them will not be added to the GRUB boot configuration. 486s Check GRUB_DISABLE_OS_PROBER documentation entry. 486s Adding boot menu entry for UEFI Firmware Settings ... 486s done 486s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 486s W: Removing the running kernel 486s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 486s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 486s /etc/kernel/postrm.d/initramfs-tools: 486s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 486s /etc/kernel/postrm.d/zz-update-grub: 486s Sourcing file `/etc/default/grub' 486s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 486s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 486s Generating grub configuration file ... 486s Found linux image: /boot/vmlinuz-6.14.0-10-generic 486s Found initrd image: /boot/initrd.img-6.14.0-10-generic 486s Warning: os-prober will not be executed to detect other bootable partitions. 486s Systems on them will not be added to the GRUB boot configuration. 486s Check GRUB_DISABLE_OS_PROBER documentation entry. 486s Adding boot menu entry for UEFI Firmware Settings ... 486s done 486s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 487s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 488s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 489s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 489s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 489s Processing triggers for libc-bin (2.41-1ubuntu1) ... 489s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 489s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 489s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 489s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 489s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 489s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 489s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 489s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 489s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 489s autopkgtest [22:08:37]: upgrading testbed (apt dist-upgrade and autopurge) 489s Reading package lists... 490s Building dependency tree... 490s Reading state information... 490s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 490s Starting 2 pkgProblemResolver with broken count: 0 490s Done 491s Entering ResolveByKeep 491s 491s Calculating upgrade... 491s The following packages will be upgraded: 491s libc-bin libc-dev-bin libc6 libc6-dev locales 492s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 492s Need to get 10.5 MB of archives. 492s After this operation, 1024 B of additional disk space will be used. 492s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 492s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 492s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 492s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 492s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 493s Preconfiguring packages ... 493s Fetched 10.5 MB in 1s (9330 kB/s) 493s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 493s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 493s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 493s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 493s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 493s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 494s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 494s Setting up libc6:amd64 (2.41-1ubuntu2) ... 494s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 494s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 494s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 494s Setting up libc-bin (2.41-1ubuntu2) ... 494s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 494s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 494s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 494s Setting up locales (2.41-1ubuntu2) ... 495s Generating locales (this might take a while)... 496s en_US.UTF-8... done 496s Generation complete. 497s Setting up libc-dev-bin (2.41-1ubuntu2) ... 497s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 497s Processing triggers for man-db (2.13.0-1) ... 497s Processing triggers for systemd (257.3-1ubuntu3) ... 498s Reading package lists... 498s Building dependency tree... 498s Reading state information... 499s Starting pkgProblemResolver with broken count: 0 499s Starting 2 pkgProblemResolver with broken count: 0 499s Done 499s Solving dependencies... 499s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 500s autopkgtest [22:08:48]: rebooting testbed after setup commands that affected boot 523s autopkgtest [22:09:11]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 527s autopkgtest [22:09:15]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rsamtools 529s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rsamtools 2.22.0+dfsg-2 (dsc) [2381 B] 529s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rsamtools 2.22.0+dfsg-2 (tar) [2469 kB] 529s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rsamtools 2.22.0+dfsg-2 (diff) [7200 B] 530s gpgv: Signature made Sun Jan 12 19:28:33 2025 UTC 530s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 530s gpgv: issuer "crusoe@debian.org" 530s gpgv: Can't check signature: No public key 530s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rsamtools_2.22.0+dfsg-2.dsc: no acceptable signature found 530s autopkgtest [22:09:18]: testing package r-bioc-rsamtools version 2.22.0+dfsg-2 530s autopkgtest [22:09:18]: build not needed 533s autopkgtest [22:09:21]: test pkg-r-autopkgtest: preparing testbed 533s Reading package lists... 534s Building dependency tree... 534s Reading state information... 534s Starting pkgProblemResolver with broken count: 0 534s Starting 2 pkgProblemResolver with broken count: 0 534s Done 535s The following NEW packages will be installed: 535s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 535s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 535s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 535s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 535s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 535s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 535s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 535s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 535s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 535s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 535s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 535s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 535s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 535s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 535s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 535s libjs-popper.js libjs-prettify libjs-sifter.js 535s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 535s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 535s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 535s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 535s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 535s libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev 535s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 535s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 535s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 535s libxss1 libxt6t64 libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv 535s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 535s r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase 535s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 535s r-bioc-biocversion r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb 535s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 535s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 535s r-bioc-pwalign r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 535s r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 535s r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 535s r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager 535s r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown 535s r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark 535s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-deldir 535s r-cran-digest r-cran-evaluate r-cran-fastmap r-cran-fontawesome 535s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 535s r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 535s r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 535s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 535s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 535s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl 535s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-promises 535s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen 535s r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 535s r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny r-cran-snow 535s r-cran-sourcetools r-cran-sys r-cran-tinytex r-cran-vctrs r-cran-withr 535s r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml t1utils tex-common 535s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 535s x11-common xdg-utils zip zlib1g-dev 535s 0 upgraded, 262 newly installed, 0 to remove and 0 not upgraded. 535s Need to get 432 MB of archives. 535s After this operation, 1355 MB of additional disk space will be used. 535s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 535s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 535s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 536s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 536s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 536s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 536s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 536s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 536s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 536s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 536s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 536s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 536s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 536s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 536s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 536s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 536s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 537s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 537s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 537s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 537s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 537s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 538s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 538s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 538s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 538s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 538s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 538s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 538s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 538s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 538s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 538s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 538s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 538s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 538s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 538s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 538s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 538s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 538s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 539s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 539s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 539s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 539s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 539s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 539s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 539s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 539s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 539s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 539s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 539s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB] 540s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 540s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 540s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 540s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 540s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 540s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 540s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 540s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 540s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 540s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 540s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 540s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 540s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 540s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 540s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 540s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 540s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 540s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 540s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 540s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 540s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 540s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 540s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 540s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 540s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 541s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 541s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 541s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 541s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 541s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 541s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 541s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 541s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 541s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 541s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 541s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB] 541s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 541s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 541s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 541s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 541s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 541s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 541s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 541s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 541s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 541s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 541s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 541s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 541s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 541s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 541s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 541s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 541s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 542s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 542s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 542s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 542s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 542s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB] 542s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 542s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 542s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 542s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB] 542s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 542s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 542s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB] 542s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 542s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 542s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 542s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 542s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 542s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 542s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 542s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 542s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 542s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 542s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 542s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 542s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 542s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 542s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 542s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 543s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 543s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 543s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 543s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 543s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 543s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 543s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 544s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 544s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 544s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 544s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 544s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 544s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 544s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 544s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 544s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 544s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 545s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 545s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 545s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB] 545s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 545s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 545s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 545s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 545s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 545s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 545s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 545s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 545s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 545s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 545s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 545s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 545s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 545s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 545s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 545s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 545s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 545s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 545s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 545s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 545s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 545s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 545s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 545s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 545s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 545s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 546s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 546s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 546s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 546s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 546s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 546s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 546s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 546s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 546s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 546s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 546s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 546s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 546s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 546s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 546s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 547s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 547s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 547s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 547s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 547s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 547s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 547s Get:199 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 547s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 547s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 547s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 547s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 547s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 547s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 548s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 548s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 548s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 548s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 548s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 548s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 548s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 548s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 548s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 548s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 548s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 548s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 548s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 548s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 548s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 548s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 548s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 548s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 548s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB] 548s Get:225 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 548s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB] 548s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB] 549s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB] 549s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 552s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 552s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 552s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 552s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 552s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 552s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 552s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 552s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 552s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1392 kB] 552s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 552s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 552s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 552s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB] 552s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 552s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 553s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 553s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 553s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 553s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 553s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 553s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB] 553s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 553s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-pwalign amd64 1.2.0-2 [757 kB] 553s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 553s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB] 553s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 553s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 553s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 553s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 553s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 553s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 553s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-shortread amd64 1.64.0-3 [5247 kB] 553s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 554s Preconfiguring packages ... 554s Fetched 432 MB in 19s (23.1 MB/s) 554s Selecting previously unselected package libisl23:amd64. 554s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 554s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 554s Unpacking libisl23:amd64 (0.27-1) ... 555s Selecting previously unselected package libmpc3:amd64. 555s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 555s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 555s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 555s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 555s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 555s Selecting previously unselected package cpp-14. 555s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 555s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 555s Selecting previously unselected package cpp-x86-64-linux-gnu. 555s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 555s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 555s Selecting previously unselected package cpp. 555s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 555s Unpacking cpp (4:14.2.0-1ubuntu1) ... 555s Selecting previously unselected package libcc1-0:amd64. 555s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 555s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 555s Selecting previously unselected package libgomp1:amd64. 555s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 555s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 555s Selecting previously unselected package libitm1:amd64. 555s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 555s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 555s Selecting previously unselected package libasan8:amd64. 555s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 555s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 555s Selecting previously unselected package liblsan0:amd64. 555s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 555s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 555s Selecting previously unselected package libtsan2:amd64. 555s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 555s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 555s Selecting previously unselected package libubsan1:amd64. 555s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 555s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 555s Selecting previously unselected package libhwasan0:amd64. 555s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 555s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 555s Selecting previously unselected package libquadmath0:amd64. 555s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 555s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 555s Selecting previously unselected package libgcc-14-dev:amd64. 555s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 555s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 555s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 555s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 555s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 556s Selecting previously unselected package gcc-14. 556s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 556s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 556s Selecting previously unselected package gcc-x86-64-linux-gnu. 556s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 556s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 556s Selecting previously unselected package gcc. 556s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 556s Unpacking gcc (4:14.2.0-1ubuntu1) ... 556s Selecting previously unselected package libstdc++-14-dev:amd64. 556s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 556s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 556s Selecting previously unselected package g++-14-x86-64-linux-gnu. 556s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 556s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 556s Selecting previously unselected package g++-14. 556s Preparing to unpack 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previously unselected package libkpathsea6:amd64. 562s Preparing to unpack .../085-libkpathsea6_2024.20240313.70630+ds-6_amd64.deb ... 562s Unpacking libkpathsea6:amd64 (2024.20240313.70630+ds-6) ... 562s Selecting previously unselected package liblapack3:amd64. 562s Preparing to unpack .../086-liblapack3_3.12.1-2_amd64.deb ... 562s Unpacking liblapack3:amd64 (3.12.1-2) ... 562s Selecting previously unselected package liblapack-dev:amd64. 562s Preparing to unpack .../087-liblapack-dev_3.12.1-2_amd64.deb ... 562s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 562s Selecting previously unselected package liblerc4:amd64. 562s Preparing to unpack .../088-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 562s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 562s Selecting previously unselected package liblua5.4-0:amd64. 562s Preparing to unpack .../089-liblua5.4-0_5.4.7-1_amd64.deb ... 562s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 562s Selecting previously unselected package libmpfi0:amd64. 562s 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previously unselected package libpotrace0:amd64. 563s Preparing to unpack .../106-libpotrace0_1.16-2build1_amd64.deb ... 563s Unpacking libpotrace0:amd64 (1.16-2build1) ... 563s Selecting previously unselected package libptexenc1:amd64. 563s Preparing to unpack .../107-libptexenc1_2024.20240313.70630+ds-6_amd64.deb ... 563s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-6) ... 563s Selecting previously unselected package libreadline-dev:amd64. 563s Preparing to unpack .../108-libreadline-dev_8.2-6_amd64.deb ... 563s Unpacking libreadline-dev:amd64 (8.2-6) ... 563s Selecting previously unselected package libsharpyuv0:amd64. 563s Preparing to unpack .../109-libsharpyuv0_1.5.0-0.1_amd64.deb ... 563s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 563s Selecting previously unselected package libsm6:amd64. 563s Preparing to unpack .../110-libsm6_2%3a1.2.4-1_amd64.deb ... 563s Unpacking libsm6:amd64 (2:1.2.4-1) ... 563s Selecting previously unselected package libsynctex2:amd64. 563s Preparing to unpack .../111-libsynctex2_2024.20240313.70630+ds-6_amd64.deb ... 563s Unpacking libsynctex2:amd64 (2024.20240313.70630+ds-6) ... 563s Selecting previously unselected package libtcl8.6:amd64. 563s Preparing to unpack .../112-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 563s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 563s Selecting previously unselected package libteckit0:amd64. 563s Preparing to unpack .../113-libteckit0_2.5.12+ds1-1_amd64.deb ... 563s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 563s Selecting previously unselected package libtexlua53-5:amd64. 563s Preparing to unpack .../114-libtexlua53-5_2024.20240313.70630+ds-6_amd64.deb ... 563s Unpacking libtexlua53-5:amd64 (2024.20240313.70630+ds-6) ... 563s Selecting previously unselected package libjbig0:amd64. 563s Preparing to unpack .../115-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 563s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 563s Selecting previously unselected package libwebp7:amd64. 563s Preparing to unpack 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(1:1.2.1-1.2build1) ... 564s Selecting previously unselected package libxmu6:amd64. 564s Preparing to unpack .../122-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 564s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 564s Selecting previously unselected package libxpm4:amd64. 564s Preparing to unpack .../123-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 564s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 564s Selecting previously unselected package libxaw7:amd64. 564s Preparing to unpack .../124-libxaw7_2%3a1.0.16-1_amd64.deb ... 564s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 564s Selecting previously unselected package libxi6:amd64. 564s Preparing to unpack .../125-libxi6_2%3a1.8.2-1_amd64.deb ... 564s Unpacking libxi6:amd64 (2:1.8.2-1) ... 564s Selecting previously unselected package libzzip-0-13t64:amd64. 564s Preparing to unpack .../126-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 564s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 564s Selecting previously unselected package zip. 564s Preparing to unpack .../127-zip_3.0-14ubuntu2_amd64.deb ... 564s Unpacking zip (3.0-14ubuntu2) ... 564s Selecting previously unselected package unzip. 564s Preparing to unpack .../128-unzip_6.0-28ubuntu6_amd64.deb ... 564s Unpacking unzip (6.0-28ubuntu6) ... 564s Selecting previously unselected package xdg-utils. 564s Preparing to unpack .../129-xdg-utils_1.2.1-2ubuntu1_all.deb ... 564s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 564s Selecting previously unselected package r-base-core. 564s Preparing to unpack .../130-r-base-core_4.4.3-1_amd64.deb ... 564s Unpacking r-base-core (4.4.3-1) ... 564s Selecting previously unselected package r-cran-littler. 564s Preparing to unpack .../131-r-cran-littler_0.3.20-2_amd64.deb ... 564s Unpacking r-cran-littler (0.3.20-2) ... 565s Selecting previously unselected package littler. 565s Preparing to unpack .../132-littler_0.3.20-2_all.deb ... 565s Unpacking littler (0.3.20-2) ... 565s Selecting previously unselected package node-bootstrap-sass. 565s Preparing to unpack .../133-node-bootstrap-sass_3.4.3-2_all.deb ... 565s Unpacking node-bootstrap-sass (3.4.3-2) ... 565s Selecting previously unselected package node-html5shiv. 565s Preparing to unpack .../134-node-html5shiv_3.7.3+dfsg-5_all.deb ... 565s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 565s Selecting previously unselected package node-normalize.css. 565s Preparing to unpack .../135-node-normalize.css_8.0.1-5_all.deb ... 565s Unpacking node-normalize.css (8.0.1-5) ... 565s Selecting previously unselected package pandoc-data. 565s Preparing to unpack .../136-pandoc-data_3.1.11.1-3build1_all.deb ... 565s Unpacking pandoc-data (3.1.11.1-3build1) ... 565s Selecting previously unselected package pandoc. 565s Preparing to unpack .../137-pandoc_3.1.11.1+ds-2_amd64.deb ... 565s Unpacking pandoc (3.1.11.1+ds-2) ... 566s Selecting previously unselected package liblzma-dev:amd64. 566s Preparing to unpack .../138-liblzma-dev_5.6.4-1_amd64.deb ... 566s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 566s Selecting previously unselected package pkgconf-bin. 566s Preparing to unpack .../139-pkgconf-bin_1.8.1-4_amd64.deb ... 566s Unpacking pkgconf-bin (1.8.1-4) ... 566s Selecting previously unselected package pkgconf:amd64. 566s Preparing to unpack .../140-pkgconf_1.8.1-4_amd64.deb ... 566s Unpacking pkgconf:amd64 (1.8.1-4) ... 566s Selecting previously unselected package libtirpc-dev:amd64. 566s Preparing to unpack .../141-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 566s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 566s Selecting previously unselected package r-base-dev. 566s Preparing to unpack .../142-r-base-dev_4.4.3-1_all.deb ... 566s Unpacking r-base-dev (4.4.3-1) ... 566s Selecting previously unselected package pkg-r-autopkgtest. 566s Preparing to unpack .../143-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 566s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 566s Selecting previously unselected package r-bioc-biocgenerics. 566s Preparing to unpack .../144-r-bioc-biocgenerics_0.52.0-2_all.deb ... 566s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 566s Selecting previously unselected package r-bioc-biobase. 566s Preparing to unpack .../145-r-bioc-biobase_2.66.0-2_amd64.deb ... 566s Unpacking r-bioc-biobase (2.66.0-2) ... 566s Selecting previously unselected package r-bioc-s4vectors. 566s Preparing to unpack .../146-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 566s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 566s Selecting previously unselected package r-bioc-iranges. 566s Preparing to unpack .../147-r-bioc-iranges_2.40.1-2_amd64.deb ... 566s Unpacking r-bioc-iranges (2.40.1-2) ... 566s Selecting previously unselected package r-cran-dbi. 566s Preparing to unpack .../148-r-cran-dbi_1.2.3-1_all.deb ... 566s Unpacking r-cran-dbi (1.2.3-1) ... 566s Selecting previously unselected package r-cran-bit. 566s Preparing to unpack .../149-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 566s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 566s Selecting previously unselected package r-cran-bit64. 566s Preparing to unpack .../150-r-cran-bit64_4.6.0-1-1ubuntu2_amd64.deb ... 566s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 566s Selecting previously unselected package r-cran-rlang. 566s Preparing to unpack .../151-r-cran-rlang_1.1.5-1_amd64.deb ... 566s Unpacking r-cran-rlang (1.1.5-1) ... 566s Selecting previously unselected package r-cran-cli. 566s Preparing to unpack .../152-r-cran-cli_3.6.4-1_amd64.deb ... 566s Unpacking r-cran-cli (3.6.4-1) ... 567s Selecting previously unselected package r-cran-glue. 567s Preparing to unpack .../153-r-cran-glue_1.8.0-1_amd64.deb ... 567s Unpacking r-cran-glue (1.8.0-1) ... 567s Selecting previously unselected package r-cran-lifecycle. 567s Preparing to unpack .../154-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 567s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 567s Selecting previously unselected package r-cran-vctrs. 567s Preparing to unpack .../155-r-cran-vctrs_0.6.5-1_amd64.deb ... 567s Unpacking r-cran-vctrs (0.6.5-1) ... 567s Selecting previously unselected package r-cran-blob. 567s Preparing to unpack .../156-r-cran-blob_1.2.4-1_all.deb ... 567s Unpacking r-cran-blob (1.2.4-1) ... 567s Selecting previously unselected package r-cran-fastmap. 567s Preparing to unpack .../157-r-cran-fastmap_1.2.0-1_amd64.deb ... 567s Unpacking r-cran-fastmap (1.2.0-1) ... 567s Selecting previously unselected package r-cran-cachem. 567s Preparing to unpack .../158-r-cran-cachem_1.1.0-1_amd64.deb ... 567s Unpacking r-cran-cachem (1.1.0-1) ... 567s Selecting previously unselected package r-cran-memoise. 567s Preparing to unpack .../159-r-cran-memoise_2.0.1-1_all.deb ... 567s Unpacking r-cran-memoise (2.0.1-1) ... 567s Selecting previously unselected package r-cran-pkgconfig. 567s Preparing to unpack .../160-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 567s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 567s Selecting previously unselected package r-cran-plogr. 567s Preparing to unpack .../161-r-cran-plogr_0.2.0-3build1_all.deb ... 567s Unpacking r-cran-plogr (0.2.0-3build1) ... 567s Selecting previously unselected package r-cran-cpp11. 567s Preparing to unpack .../162-r-cran-cpp11_0.5.2-1_all.deb ... 567s Unpacking r-cran-cpp11 (0.5.2-1) ... 567s Selecting previously unselected package r-cran-rsqlite. 567s Preparing to unpack .../163-r-cran-rsqlite_2.3.9-1_amd64.deb ... 567s Unpacking r-cran-rsqlite (2.3.9-1) ... 567s Selecting previously unselected package r-cran-curl. 567s Preparing to unpack .../164-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 567s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 567s Selecting previously unselected package r-cran-jsonlite. 567s Preparing to unpack .../165-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 567s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 567s Selecting previously unselected package r-cran-mime. 567s Preparing to unpack .../166-r-cran-mime_0.12-2_amd64.deb ... 567s Unpacking r-cran-mime (0.12-2) ... 567s Selecting previously unselected package r-cran-sys. 567s Preparing to unpack .../167-r-cran-sys_3.4.3-1_amd64.deb ... 567s Unpacking r-cran-sys (3.4.3-1) ... 567s Selecting previously unselected package r-cran-askpass. 567s Preparing to unpack .../168-r-cran-askpass_1.2.1-1_amd64.deb ... 567s Unpacking r-cran-askpass (1.2.1-1) ... 567s Selecting previously unselected package r-cran-openssl. 567s Preparing to unpack .../169-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 567s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 567s Selecting previously unselected package r-cran-r6. 567s Preparing to unpack .../170-r-cran-r6_2.6.1-1_all.deb ... 567s Unpacking r-cran-r6 (2.6.1-1) ... 567s Selecting previously unselected package r-cran-httr. 567s Preparing to unpack .../171-r-cran-httr_1.4.7+dfsg-1_all.deb ... 567s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 567s Selecting previously unselected package r-cran-png. 567s Preparing to unpack .../172-r-cran-png_0.1-8-1build2_amd64.deb ... 567s Unpacking r-cran-png (0.1-8-1build2) ... 567s Selecting previously unselected package r-bioc-zlibbioc. 567s Preparing to unpack .../173-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 567s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 567s Selecting previously unselected package r-bioc-xvector. 567s Preparing to unpack .../174-r-bioc-xvector_0.46.0-2_amd64.deb ... 567s Unpacking r-bioc-xvector (0.46.0-2) ... 568s Selecting previously unselected package r-bioc-ucsc.utils. 568s Preparing to unpack .../175-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 568s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 568s Selecting previously unselected package r-bioc-genomeinfodbdata. 568s Preparing to unpack .../176-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 568s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 568s Selecting previously unselected package r-bioc-genomeinfodb. 568s Preparing to unpack .../177-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 568s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 568s Selecting previously unselected package r-cran-crayon. 568s Preparing to unpack .../178-r-cran-crayon_1.5.3-1_all.deb ... 568s Unpacking r-cran-crayon (1.5.3-1) ... 568s Selecting previously unselected package r-bioc-biostrings. 568s Preparing to unpack .../179-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 568s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 568s Selecting previously unselected package r-bioc-keggrest. 568s Preparing to unpack .../180-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 568s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 568s Selecting previously unselected package r-bioc-annotationdbi. 568s Preparing to unpack .../181-r-bioc-annotationdbi_1.68.0-2_all.deb ... 568s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 568s Selecting previously unselected package r-bioc-biocio. 568s Preparing to unpack .../182-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 568s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 568s Selecting previously unselected package r-cran-formatr. 568s Preparing to unpack .../183-r-cran-formatr_1.14-2_all.deb ... 568s Unpacking r-cran-formatr (1.14-2) ... 568s Selecting previously unselected package r-cran-lambda.r. 568s Preparing to unpack .../184-r-cran-lambda.r_1.2.4-2build1_all.deb ... 568s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 568s Selecting previously unselected package r-cran-futile.options. 568s Preparing to unpack .../185-r-cran-futile.options_1.0.1-3build1_all.deb ... 568s Unpacking r-cran-futile.options (1.0.1-3build1) ... 568s Selecting previously unselected package r-cran-futile.logger. 568s Preparing to unpack .../186-r-cran-futile.logger_1.4.3-4build1_all.deb ... 568s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 568s Selecting previously unselected package r-cran-snow. 568s Preparing to unpack .../187-r-cran-snow_1%3a0.4.4-2_all.deb ... 568s Unpacking r-cran-snow (1:0.4.4-2) ... 568s Selecting previously unselected package r-cran-codetools. 568s Preparing to unpack .../188-r-cran-codetools_0.2-20-1_all.deb ... 568s Unpacking r-cran-codetools (0.2-20-1) ... 568s Selecting previously unselected package r-cran-bh. 568s Preparing to unpack .../189-r-cran-bh_1.84.0-1_all.deb ... 568s Unpacking r-cran-bh (1.84.0-1) ... 568s Selecting previously unselected package r-bioc-biocparallel. 568s Preparing to unpack .../190-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 568s Unpacking r-bioc-biocparallel (1.40.0-2) ... 568s Selecting previously unselected package r-cran-base64enc. 568s Preparing to unpack .../191-r-cran-base64enc_0.1-3-3_amd64.deb ... 568s Unpacking r-cran-base64enc (0.1-3-3) ... 568s Selecting previously unselected package r-cran-digest. 568s Preparing to unpack .../192-r-cran-digest_0.6.37-1_amd64.deb ... 568s Unpacking r-cran-digest (0.6.37-1) ... 568s Selecting previously unselected package r-cran-htmltools. 569s Preparing to unpack .../193-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 569s Unpacking r-cran-htmltools (0.5.8.1-1) ... 569s Selecting previously unselected package r-cran-evaluate. 569s Preparing to unpack .../194-r-cran-evaluate_1.0.3-1_all.deb ... 569s Unpacking r-cran-evaluate (1.0.3-1) ... 569s Selecting previously unselected package r-cran-xfun. 569s Preparing to unpack .../195-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 569s Unpacking r-cran-xfun (0.51+dfsg-1) ... 569s Selecting previously unselected package r-cran-highr. 569s Preparing to unpack .../196-r-cran-highr_0.11+dfsg-1_all.deb ... 569s Unpacking r-cran-highr (0.11+dfsg-1) ... 569s Selecting previously unselected package r-cran-yaml. 569s Preparing to unpack .../197-r-cran-yaml_2.3.10-1_amd64.deb ... 569s Unpacking r-cran-yaml (2.3.10-1) ... 569s Selecting previously unselected package libjs-mathjax. 569s Preparing to unpack .../198-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 569s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 569s Selecting previously unselected package r-cran-knitr. 570s Preparing to unpack .../199-r-cran-knitr_1.49+dfsg-1_all.deb ... 570s Unpacking r-cran-knitr (1.49+dfsg-1) ... 570s Selecting previously unselected package r-cran-jquerylib. 570s Preparing to unpack .../200-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 570s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 570s Selecting previously unselected package r-cran-fs. 570s Preparing to unpack .../201-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 570s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 570s Selecting previously unselected package r-cran-rappdirs. 570s Preparing to unpack .../202-r-cran-rappdirs_0.3.3-1_amd64.deb ... 570s Unpacking r-cran-rappdirs (0.3.3-1) ... 570s Selecting previously unselected package r-cran-sass. 570s Preparing to unpack .../203-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 570s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 570s Selecting previously unselected package r-cran-bslib. 570s Preparing to unpack .../204-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 570s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 570s Selecting previously unselected package r-cran-fontawesome. 570s Preparing to unpack .../205-r-cran-fontawesome_0.5.3-1_all.deb ... 570s Unpacking r-cran-fontawesome (0.5.3-1) ... 570s Selecting previously unselected package r-cran-tinytex. 570s Preparing to unpack .../206-r-cran-tinytex_0.56-1_all.deb ... 570s Unpacking r-cran-tinytex (0.56-1) ... 570s Selecting previously unselected package libjs-modernizr. 570s Preparing to unpack .../207-libjs-modernizr_3.13.0-0.1_all.deb ... 570s Unpacking libjs-modernizr (3.13.0-0.1) ... 570s Selecting previously unselected package r-cran-pkgkitten. 570s Preparing to unpack .../208-r-cran-pkgkitten_0.2.4-1_all.deb ... 570s Unpacking r-cran-pkgkitten (0.2.4-1) ... 570s Selecting previously unselected package r-cran-rcpp. 570s Preparing to unpack .../209-r-cran-rcpp_1.0.14-1_amd64.deb ... 570s Unpacking r-cran-rcpp (1.0.14-1) ... 570s Selecting previously unselected package r-cran-later. 570s Preparing to unpack .../210-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 570s Unpacking r-cran-later (1.4.1+dfsg-1) ... 570s Selecting previously unselected package r-cran-magrittr. 570s Preparing to unpack .../211-r-cran-magrittr_2.0.3-1_amd64.deb ... 570s Unpacking r-cran-magrittr (2.0.3-1) ... 570s Selecting previously unselected package r-cran-promises. 570s Preparing to unpack .../212-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 570s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 570s Selecting previously unselected package r-cran-httpuv. 570s Preparing to unpack .../213-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 570s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 570s Selecting previously unselected package r-cran-xtable. 570s Preparing to unpack .../214-r-cran-xtable_1%3a1.8-4-2_all.deb ... 570s Unpacking r-cran-xtable (1:1.8-4-2) ... 571s Selecting previously unselected package r-cran-sourcetools. 571s Preparing to unpack .../215-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 571s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 571s Selecting previously unselected package r-cran-withr. 571s Preparing to unpack .../216-r-cran-withr_3.0.2+dfsg-1_all.deb ... 571s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 571s Selecting previously unselected package r-cran-commonmark. 571s Preparing to unpack .../217-r-cran-commonmark_1.9.2-2_amd64.deb ... 571s Unpacking r-cran-commonmark (1.9.2-2) ... 571s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 571s Preparing to unpack .../218-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 571s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 571s Selecting previously unselected package r-cran-shiny. 571s Preparing to unpack .../219-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 571s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 571s Selecting previously unselected package r-cran-rmarkdown. 571s Preparing to unpack .../220-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 571s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 571s Selecting previously unselected package r-cran-bookdown. 571s Preparing to unpack .../221-r-cran-bookdown_0.42+dfsg-1_all.deb ... 571s Unpacking r-cran-bookdown 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r-bioc-sparsearray (1.6.2+dfsg-1) ... 575s Selecting previously unselected package r-bioc-delayedarray. 575s Preparing to unpack .../238-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 575s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 575s Selecting previously unselected package r-bioc-genomicranges. 575s Preparing to unpack .../239-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 575s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 575s Selecting previously unselected package r-bioc-summarizedexperiment. 575s Preparing to unpack .../240-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 575s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 575s Selecting previously unselected package r-cran-bitops. 576s Preparing to unpack .../241-r-cran-bitops_1.0-9-1_amd64.deb ... 576s Unpacking r-cran-bitops (1.0-9-1) ... 576s Selecting previously unselected package r-bioc-rhtslib. 576s Preparing to unpack .../242-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ... 576s Unpacking 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(1.30.25+dfsg-1) ... 582s Setting up gcc (4:14.2.0-1ubuntu1) ... 582s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 582s Setting up r-cran-deldir (2.0-4-1build1) ... 582s Setting up r-cran-askpass (1.2.1-1) ... 582s Setting up r-cran-fastmap (1.2.0-1) ... 582s Setting up r-cran-png (0.1-8-1build2) ... 582s Setting up r-bioc-biobase (2.66.0-2) ... 582s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 582s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 582s Setting up texlive-latex-base (2024.20250114-1) ... 582s Setting up r-cran-hwriter (1.3.2.1-1) ... 582s Setting up r-cran-cpp11 (0.5.2-1) ... 582s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 582s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 582s Setting up r-cran-runit (0.4.33-1) ... 582s Setting up r-cran-futile.logger (1.4.3-4build1) ... 582s Setting up r-cran-later (1.4.1+dfsg-1) ... 582s Setting up r-cran-matrix (1.7-3-1) ... 582s Setting up r-cran-htmltools (0.5.8.1-1) ... 582s Setting up r-cran-tinytex (0.56-1) ... 582s Setting up r-cran-knitr (1.49+dfsg-1) ... 582s Setting up g++ (4:14.2.0-1ubuntu1) ... 582s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 582s Setting up r-cran-cachem (1.1.0-1) ... 582s Setting up r-cran-sass (0.4.9+dfsg-1) ... 582s Setting up build-essential (12.10ubuntu1) ... 582s Setting up r-bioc-iranges (2.40.1-2) ... 582s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 582s Setting up r-cran-restfulr (0.0.15-1) ... 582s Setting up r-cran-vctrs (0.6.5-1) ... 582s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ... 582s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 583s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 583s Setting up r-bioc-biocparallel (1.40.0-2) ... 583s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 583s Setting up r-cran-fontawesome (0.5.3-1) ... 583s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 583s Setting up gfortran (4:14.2.0-1ubuntu1) ... 583s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 583s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 583s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 583s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 583s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 583s Setting up texlive-bibtex-extra (2024.20250114-1) ... 583s Setting up r-cran-interp (1.1-6-1) ... 583s Setting up r-cran-httr (1.4.7+dfsg-1) ... 583s Setting up r-cran-memoise (2.0.1-1) ... 583s Setting up r-cran-promises (1.3.2+dfsg-1) ... 583s Setting up r-cran-blob (1.2.4-1) ... 583s Setting up r-bioc-xvector (0.46.0-2) ... 583s Setting up r-cran-rsqlite (2.3.9-1) ... 583s Setting up r-base-dev (4.4.3-1) ... 583s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 583s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 583s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 583s Setting up r-cran-latticeextra (0.6-30-1) ... 583s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 583s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 583s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 583s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 583s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 583s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 583s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 583s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 583s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 583s Setting up r-cran-bookdown (0.42+dfsg-1) ... 583s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 583s Setting up r-bioc-pwalign (1.2.0-2) ... 583s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 583s Setting up r-bioc-annotationdbi (1.68.0-2) ... 583s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 583s Setting up r-bioc-genomicalignments (1.42.0-2) ... 583s Setting up r-bioc-rtracklayer (1.66.0-2) ... 583s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 583s Setting up r-bioc-shortread (1.64.0-3) ... 583s Processing triggers for libc-bin (2.41-1ubuntu2) ... 583s Processing triggers for man-db (2.13.0-1) ... 584s Processing triggers for install-info (7.1.1-1) ... 584s Processing triggers for tex-common (6.19) ... 585s Running updmap-sys. This may take some time... done. 585s Running mktexlsr /var/lib/texmf ... done. 585s Building format(s) --all. 615s This may take some time... done. 616s autopkgtest [22:10:44]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 616s autopkgtest [22:10:44]: test pkg-r-autopkgtest: [----------------------- 616s Test: Try to load the R library Rsamtools 616s 616s R version 4.4.3 (2025-02-28) -- "Trophy Case" 616s Copyright (C) 2025 The R Foundation for Statistical Computing 616s Platform: x86_64-pc-linux-gnu 616s 616s R is free software and comes with ABSOLUTELY NO WARRANTY. 616s You are welcome to redistribute it under certain conditions. 616s Type 'license()' or 'licence()' for distribution details. 616s 616s R is a collaborative project with many contributors. 616s Type 'contributors()' for more information and 616s 'citation()' on how to cite R or R packages in publications. 616s 616s Type 'demo()' for some demos, 'help()' for on-line help, or 616s 'help.start()' for an HTML browser interface to help. 616s Type 'q()' to quit R. 616s 617s > library('Rsamtools') 617s Loading required package: GenomeInfoDb 617s Loading required package: BiocGenerics 617s 617s Attaching package: ‘BiocGenerics’ 617s 617s The following objects are masked from ‘package:stats’: 617s 617s IQR, mad, sd, var, xtabs 617s 617s The following objects are masked from ‘package:base’: 617s 617s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 617s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 617s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 617s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 617s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 617s table, tapply, union, unique, unsplit, which.max, which.min 617s 617s Loading required package: S4Vectors 617s Loading required package: stats4 617s 617s Attaching package: ‘S4Vectors’ 617s 617s The following object is masked from ‘package:utils’: 617s 617s findMatches 617s 617s The following objects are masked from ‘package:base’: 617s 617s expand.grid, I, unname 617s 617s Loading required package: IRanges 618s Loading required package: GenomicRanges 619s Loading required package: Biostrings 619s Loading required package: XVector 619s 619s Attaching package: ‘Biostrings’ 619s 619s The following object is masked from ‘package:base’: 619s 619s strsplit 619s 620s > 620s > 620s Other tests are currently unsupported! 620s They will be progressively added. 620s autopkgtest [22:10:48]: test pkg-r-autopkgtest: -----------------------] 620s autopkgtest [22:10:48]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 620s pkg-r-autopkgtest PASS 621s autopkgtest [22:10:49]: @@@@@@@@@@@@@@@@@@@@ summary 621s pkg-r-autopkgtest PASS 627s nova [W] Skipping flock for amd64 627s Creating nova instance adt-plucky-amd64-r-bioc-rsamtools-20250315-220028-juju-7f2275-prod-proposed-migration-environment-2-92b0fa03-7c06-4af7-afce-49af8c3d4697 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 627s nova [W] nova quota exceeded (attempt #0) 627s nova [W] Timed out waiting for 35f9174b-217f-4c2b-abfa-a2852a12c5f0 to get deleted.