0s autopkgtest [22:00:18]: starting date and time: 2025-03-15 22:00:18+0000 0s autopkgtest [22:00:18]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [22:00:18]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0mfcxjuj/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-rhtslib --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-27.secgroup --name adt-plucky-amd64-r-bioc-rhtslib-20250315-220018-juju-7f2275-prod-proposed-migration-environment-20-1383975c-e441-4e68-8b81-93d73eb8d23b --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 54s autopkgtest [22:01:12]: testbed dpkg architecture: amd64 55s autopkgtest [22:01:13]: testbed apt version: 2.9.31ubuntu1 55s autopkgtest [22:01:13]: @@@@@@@@@@@@@@@@@@@@ test bed setup 55s autopkgtest [22:01:13]: testbed release detected to be: None 56s autopkgtest [22:01:14]: updating testbed package index (apt update) 56s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 56s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 57s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 57s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 57s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 57s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 57s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 57s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 57s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 57s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 57s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 57s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 57s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 57s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 57s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 57s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 57s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 57s Fetched 1265 kB in 1s (1388 kB/s) 58s Reading package lists... 59s Reading package lists... 59s Building dependency tree... 59s Reading state information... 59s Calculating upgrade... 59s Calculating upgrade... 60s The following package was automatically installed and is no longer required: 60s libnl-genl-3-200 60s Use 'sudo apt autoremove' to remove it. 60s The following NEW packages will be installed: 60s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 60s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 60s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 60s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 60s The following packages will be upgraded: 60s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 60s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 60s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 60s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 60s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 60s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 60s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 60s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 60s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 60s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 60s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 60s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 60s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 60s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 60s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 60s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 60s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 60s parted pci.ids pciutils pinentry-curses python-apt-common python3 60s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 60s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 60s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 60s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 60s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 60s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 60s xz-utils 60s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 60s Need to get 829 MB of archives. 60s After this operation, 325 MB of additional disk space will be used. 60s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 60s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 60s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 60s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 60s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 61s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 61s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 61s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 61s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 61s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 61s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 61s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 61s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 61s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 61s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 61s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 61s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 61s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 61s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 61s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 61s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 61s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 61s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 61s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 61s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 61s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 61s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 61s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 61s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 61s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 61s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 61s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 61s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 61s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 61s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 61s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 61s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 61s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 61s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 61s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 61s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 61s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 61s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 61s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 61s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 61s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 61s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 62s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 62s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 62s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 62s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 62s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 62s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 62s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 62s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 62s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 62s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 62s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 62s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 62s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 62s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 62s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 62s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 62s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 62s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 62s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 62s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 62s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 62s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 62s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 62s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 62s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 62s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 62s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 62s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 62s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 62s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 62s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 62s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 62s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 62s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 62s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 62s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 62s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 62s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 62s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 62s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 62s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 62s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 62s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 62s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 62s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 62s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 62s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 62s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 62s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 62s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 62s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 62s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 62s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 62s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 62s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 63s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 63s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 63s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 63s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 63s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 63s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 63s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 84s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 84s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 84s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 84s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 84s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 84s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 84s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 84s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 85s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 86s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 90s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 90s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 90s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 90s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 90s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 90s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 90s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 90s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 90s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 91s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 91s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 91s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 91s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 91s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 91s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 91s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 91s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 91s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 91s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 91s Preconfiguring packages ... 91s Fetched 829 MB in 31s (26.7 MB/s) 92s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109140 files and directories currently installed.) 92s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu1_amd64.deb ... 92s Unpacking libc-dev-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 92s Preparing to unpack .../libc6-dev_2.41-1ubuntu1_amd64.deb ... 92s Unpacking libc6-dev:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 92s Preparing to unpack .../locales_2.41-1ubuntu1_all.deb ... 92s Unpacking locales (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 92s Preparing to unpack .../libc6_2.41-1ubuntu1_amd64.deb ... 92s Checking for services that may need to be restarted... 92s Checking init scripts... 92s Checking for services that may need to be restarted... 92s Checking init scripts... 93s Stopping some services possibly affected by the upgrade (will be restarted later): 93s cron: stopping...done. 93s 93s Unpacking libc6:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 93s Setting up libc6:amd64 (2.41-1ubuntu1) ... 93s Checking for services that may need to be restarted... 93s Checking init scripts... 93s Restarting services possibly affected by the upgrade: 93s cron: restarting...done. 93s 93s Services restarted successfully. 93s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 95s Preparing to unpack .../systemd_257.3-1ubuntu3_amd64.deb ... 95s Unpacking systemd (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 96s Preparing to unpack .../systemd-timesyncd_257.3-1ubuntu3_amd64.deb ... 96s Unpacking systemd-timesyncd (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 96s Preparing to unpack .../systemd-cryptsetup_257.3-1ubuntu3_amd64.deb ... 96s Unpacking systemd-cryptsetup (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 96s Preparing to unpack .../udev_257.3-1ubuntu3_amd64.deb ... 96s Unpacking udev (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 96s Preparing to unpack .../libudev1_257.3-1ubuntu3_amd64.deb ... 96s Unpacking libudev1:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 96s Setting up libudev1:amd64 (257.3-1ubuntu3) ... 96s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 96s Preparing to unpack .../libaudit1_1%3a4.0.2-2ubuntu2_amd64.deb ... 96s Unpacking libaudit1:amd64 (1:4.0.2-2ubuntu2) over (1:4.0.2-2ubuntu1) ... 96s Setting up libaudit1:amd64 (1:4.0.2-2ubuntu2) ... 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 96s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu6_amd64.deb ... 96s Unpacking libseccomp2:amd64 (2.5.5-1ubuntu6) over (2.5.5-1ubuntu5) ... 96s Setting up libseccomp2:amd64 (2.5.5-1ubuntu6) ... 96s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 98s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 98s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 98s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 98s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 98s Setting up python3-minimal (3.13.2-2) ... 98s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 98s Preparing to unpack .../0-libsqlite3-0_3.46.1-2_amd64.deb ... 98s Unpacking libsqlite3-0:amd64 (3.46.1-2) over (3.46.1-1) ... 98s Preparing to unpack .../1-python3.13_3.13.2-2_amd64.deb ... 98s Unpacking python3.13 (3.13.2-2) over (3.13.2-1) ... 98s Preparing to unpack .../2-python3.13-minimal_3.13.2-2_amd64.deb ... 98s Unpacking python3.13-minimal (3.13.2-2) over (3.13.2-1) ... 99s Preparing to unpack .../3-libpython3.13-minimal_3.13.2-2_amd64.deb ... 99s Unpacking libpython3.13-minimal:amd64 (3.13.2-2) over (3.13.2-1) ... 99s Preparing to unpack .../4-libpython3.13-stdlib_3.13.2-2_amd64.deb ... 99s Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 99s Preparing to unpack .../5-libpython3-stdlib_3.13.2-2_amd64.deb ... 99s Unpacking libpython3-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 99s Preparing to unpack .../6-rsync_3.4.1+ds1-3_amd64.deb ... 99s Unpacking rsync (3.4.1+ds1-3) over (3.4.1-0syncable1) ... 99s Selecting previously unselected package libdebuginfod-common. 99s Preparing to unpack .../7-libdebuginfod-common_0.192-4_all.deb ... 99s Unpacking libdebuginfod-common (0.192-4) ... 99s Preparing to unpack .../8-libsemanage-common_3.7-2.1build1_all.deb ... 99s Unpacking libsemanage-common (3.7-2.1build1) over (3.7-2.1) ... 99s Setting up libsemanage-common (3.7-2.1build1) ... 99s (Reading database ... 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.../23-parted_3.6-5_amd64.deb ... 102s Unpacking parted (3.6-5) over (3.6-4build1) ... 102s Preparing to unpack .../24-libparted2t64_3.6-5_amd64.deb ... 102s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 102s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 102s Unpacking libparted2t64:amd64 (3.6-5) over (3.6-4build1) ... 102s Preparing to unpack .../25-pci.ids_0.0~2025.03.09-1_all.deb ... 102s Unpacking pci.ids (0.0~2025.03.09-1) over (0.0~2025.02.12-1) ... 102s Preparing to unpack .../26-pciutils_1%3a3.13.0-2_amd64.deb ... 102s Unpacking pciutils (1:3.13.0-2) over (1:3.13.0-1) ... 102s Preparing to unpack .../27-libpci3_1%3a3.13.0-2_amd64.deb ... 102s Unpacking libpci3:amd64 (1:3.13.0-2) over (1:3.13.0-1) ... 102s Preparing to unpack .../28-strace_6.13+ds-1ubuntu1_amd64.deb ... 102s Unpacking strace 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(2.44-3ubuntu1) over (2.44-2ubuntu1) ... 102s Preparing to unpack .../36-binutils_2.44-3ubuntu1_amd64.deb ... 102s Unpacking binutils (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 103s Preparing to unpack .../37-binutils-common_2.44-3ubuntu1_amd64.deb ... 103s Unpacking binutils-common:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 103s Preparing to unpack .../38-libsframe1_2.44-3ubuntu1_amd64.deb ... 103s Unpacking libsframe1:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 103s Preparing to unpack .../39-hwdata_0.393-3_all.deb ... 103s Unpacking hwdata (0.393-3) over (0.392-1) ... 103s Selecting previously unselected package pnp.ids. 103s Preparing to unpack .../40-pnp.ids_0.393-3_all.deb ... 103s Unpacking pnp.ids (0.393-3) ... 103s Preparing to unpack .../41-linux-tools-common_6.14.0-10.10_all.deb ... 103s Unpacking linux-tools-common (6.14.0-10.10) over (6.12.0-16.16) ... 103s Selecting previously unselected package bpftool. 103s Preparing to unpack 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.../56-initramfs-tools_0.146ubuntu1_all.deb ... 108s Unpacking initramfs-tools (0.146ubuntu1) over (0.145ubuntu3) ... 108s Preparing to unpack .../57-initramfs-tools-core_0.146ubuntu1_all.deb ... 108s Unpacking initramfs-tools-core (0.146ubuntu1) over (0.145ubuntu3) ... 108s Preparing to unpack .../58-initramfs-tools-bin_0.146ubuntu1_amd64.deb ... 108s Unpacking initramfs-tools-bin (0.146ubuntu1) over (0.145ubuntu3) ... 108s Selecting previously unselected package libdebuginfod1t64:amd64. 108s Preparing to unpack .../59-libdebuginfod1t64_0.192-4_amd64.deb ... 108s Unpacking libdebuginfod1t64:amd64 (0.192-4) ... 108s Preparing to unpack .../60-libftdi1-2_1.5-8build1_amd64.deb ... 108s Unpacking libftdi1-2:amd64 (1.5-8build1) over (1.5-8) ... 108s Preparing to unpack .../61-libgpgme11t64_1.24.2-1ubuntu2_amd64.deb ... 108s Unpacking libgpgme11t64:amd64 (1.24.2-1ubuntu2) over (1.24.2-1ubuntu1) ... 108s Preparing to unpack .../62-libjemalloc2_5.3.0-3_amd64.deb ... 108s Unpacking libjemalloc2:amd64 (5.3.0-3) over (5.3.0-2build1) ... 108s Selecting previously unselected package linux-modules-6.14.0-10-generic. 108s Preparing to unpack .../63-linux-modules-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 108s Unpacking linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 108s Selecting previously unselected package linux-image-6.14.0-10-generic. 108s Preparing to unpack .../64-linux-image-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 108s Unpacking linux-image-6.14.0-10-generic (6.14.0-10.10) ... 108s Selecting previously unselected package linux-modules-extra-6.14.0-10-generic. 108s Preparing to unpack .../65-linux-modules-extra-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 108s Unpacking linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 109s Preparing to unpack .../66-linux-generic_6.14.0-10.10_amd64.deb ... 109s Unpacking linux-generic (6.14.0-10.10) over (6.12.0-16.16+2) ... 109s Preparing to unpack .../67-linux-image-generic_6.14.0-10.10_amd64.deb ... 109s 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(1.0.6-6) over (1.0.6-5) ... 114s Preparing to unpack .../79-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ... 114s Unpacking python3-rpds-py (0.21.0-2ubuntu2) over (0.21.0-2ubuntu1) ... 114s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 114s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 114s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 114s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 114s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 114s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 114s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 114s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 114s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 114s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 114s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 114s Setting up media-types (13.0.0) ... 114s Installing new version of config file /etc/mime.types ... 114s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 114s Setting up ubuntu-kernel-accessories (1.549) ... 114s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 114s Setting up pci.ids (0.0~2025.03.09-1) ... 114s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 114s Setting up apt-utils (2.9.33) ... 114s Setting up libdebuginfod-common (0.192-4) ... 114s Setting up exfatprogs (1.2.8-1) ... 114s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 114s Setting up bpftool (7.6.0+6.14.0-10.10) ... 114s Setting up libestr0:amd64 (0.1.11-2) ... 114s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 114s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 114s Setting up dosfstools (4.2-1.2) ... 114s Setting up rsyslog (8.2412.0-2ubuntu2) ... 114s info: The user `syslog' is already a member of `adm'. 115s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 115s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 115s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 115s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 115s Setting up systemd (257.3-1ubuntu3) ... 115s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 115s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 116s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 116s Setting up libparted2t64:amd64 (3.6-5) ... 116s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 116s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 116s Setting up linux-headers-generic (6.14.0-10.10) ... 116s Setting up libjemalloc2:amd64 (5.3.0-3) ... 116s Setting up locales (2.41-1ubuntu1) ... 116s Installing new version of config file /etc/locale.alias ... 117s Generating locales (this might take a while)... 118s en_US.UTF-8... done 118s Generation complete. 119s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 119s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 119s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 119s Installing new version of config file /etc/apparmor.d/fusermount3 ... 119s Installing new version of config file /etc/apparmor.d/lsusb ... 119s Installing new version of config file /etc/apparmor.d/openvpn ... 120s Reloading AppArmor profiles 121s Setting up libftdi1-2:amd64 (1.5-8build1) ... 121s Setting up libglib2.0-data (2.84.0-1) ... 121s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 121s Setting up libncurses6:amd64 (6.5+20250216-2) ... 121s Setting up strace (6.13+ds-1ubuntu1) ... 121s Setting up xz-utils (5.6.4-1) ... 121s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 122s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 122s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 122s Setting up udev (257.3-1ubuntu3) ... 123s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 124s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 124s Setting up libpci3:amd64 (1:3.13.0-2) ... 124s Setting up whiptail (0.52.24-4ubuntu2) ... 124s Setting up python-apt-common (2.9.9build1) ... 124s Setting up pnp.ids (0.393-3) ... 124s Setting up libnl-3-200:amd64 (3.7.0-1) ... 124s Setting up python3.13-minimal (3.13.2-2) ... 125s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 125s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 125s Setting up libc-dev-bin (2.41-1ubuntu1) ... 125s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 125s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 125s Setting up rsync (3.4.1+ds1-3) ... 126s rsync.service is a disabled or a static unit not running, not starting it. 126s Setting up python3.13-gdbm (3.13.2-2) ... 126s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 126s Setting up systemd-resolved (257.3-1ubuntu3) ... 126s Setting up initramfs-tools-bin (0.146ubuntu1) ... 126s Setting up ncurses-term (6.5+20250216-2) ... 126s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 126s Setting up libpython3.13:amd64 (3.13.2-2) ... 126s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 127s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 127s Setting up systemd-sysv (257.3-1ubuntu3) ... 127s Setting up linux-headers-virtual (6.14.0-10.10) ... 127s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 127s Setting up python3.13 (3.13.2-2) ... 127s Setting up htop (3.4.0-2) ... 127s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 129s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 129s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 129s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 129s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 129s Setting up parted (3.6-5) ... 129s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 129s Setting up python3 (3.13.2-2) ... 130s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 130s Setting up python3-markupsafe (2.1.5-1build4) ... 130s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 132s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 132s Setting up hwdata (0.393-3) ... 132s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 132s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 132s No schema files found: doing nothing. 132s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 132s Setting up linux-perf (6.14.0-10.10) ... 132s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 132s Setting up pciutils (1:3.13.0-2) ... 132s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 132s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 132s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 132s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 132s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 132s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 132s Setting up curl (8.12.1-3ubuntu1) ... 132s Setting up linux-image-virtual (6.14.0-10.10) ... 132s Setting up initramfs-tools-core (0.146ubuntu1) ... 132s Setting up linux-tools-common (6.14.0-10.10) ... 132s Setting up python3-systemd (235-1build6) ... 132s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 132s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 132s Setting up linux-image-generic (6.14.0-10.10) ... 132s Setting up python3-dbus (1.3.2-5build5) ... 132s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 132s Setting up initramfs-tools (0.146ubuntu1) ... 132s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 132s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 133s update-initramfs: deferring update (trigger activated) 133s Setting up linux-generic (6.14.0-10.10) ... 133s Setting up ubuntu-minimal (1.549) ... 133s Setting up python3-apt (2.9.9build1) ... 133s Setting up python3-bcrypt (4.2.0-2.1build1) ... 133s Setting up python3-yaml (6.0.2-1build2) ... 133s Setting up libfwupd3:amd64 (2.0.6-4) ... 133s Setting up python3-lazr.uri (1.0.6-6) ... 133s Setting up binutils (2.44-3ubuntu1) ... 133s Setting up ubuntu-standard (1.549) ... 133s Setting up cloud-init-base (25.1-0ubuntu3) ... 135s Setting up linux-virtual (6.14.0-10.10) ... 135s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 135s Setting up python3-gi (3.50.0-4build1) ... 135s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 135s Setting up fwupd (2.0.6-4) ... 135s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 135s fwupd.service is a disabled or a static unit not running, not starting it. 135s Setting up cloud-init (25.1-0ubuntu3) ... 135s Processing triggers for man-db (2.13.0-1) ... 137s Processing triggers for dbus (1.16.2-1ubuntu1) ... 137s Processing triggers for shared-mime-info (2.4-5) ... 137s Warning: program compiled against libxml 212 using older 209 137s Processing triggers for libc-bin (2.41-1ubuntu1) ... 137s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 137s /etc/kernel/postinst.d/initramfs-tools: 137s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 137s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 147s /etc/kernel/postinst.d/zz-update-grub: 147s Sourcing file `/etc/default/grub' 147s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 147s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 147s Generating grub configuration file ... 148s Found linux image: /boot/vmlinuz-6.14.0-10-generic 148s Found initrd image: /boot/initrd.img-6.14.0-10-generic 148s Found linux image: /boot/vmlinuz-6.12.0-16-generic 148s Found initrd image: /boot/initrd.img-6.12.0-16-generic 148s Found linux image: /boot/vmlinuz-6.11.0-8-generic 148s Found initrd image: /boot/initrd.img-6.11.0-8-generic 148s Warning: os-prober will not be executed to detect other bootable partitions. 148s Systems on them will not be added to the GRUB boot configuration. 148s Check GRUB_DISABLE_OS_PROBER documentation entry. 148s Adding boot menu entry for UEFI Firmware Settings ... 148s done 148s Processing triggers for initramfs-tools (0.146ubuntu1) ... 148s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 148s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 160s Reading package lists... 160s Building dependency tree... 160s Reading state information... 160s Solving dependencies... 160s The following packages will be REMOVED: 160s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 160s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 160s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 160s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 160s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 160s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 160s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 160s linux-tools-6.12.0-16-generic* 161s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 161s After this operation, 545 MB disk space will be freed. 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 161s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 161s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 161s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 161s Removing libpython3.12t64:amd64 (3.12.9-1) ... 161s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 161s Removing libnsl2:amd64 (1.3.0-3build3) ... 161s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 161s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 162s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 164s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 164s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 166s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 166s /etc/kernel/postrm.d/initramfs-tools: 166s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 166s /etc/kernel/postrm.d/zz-update-grub: 166s Sourcing file `/etc/default/grub' 166s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 166s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 166s Generating grub configuration file ... 167s Found linux image: /boot/vmlinuz-6.14.0-10-generic 167s Found initrd image: /boot/initrd.img-6.14.0-10-generic 167s Found linux image: /boot/vmlinuz-6.12.0-16-generic 167s Found initrd image: /boot/initrd.img-6.12.0-16-generic 167s Warning: os-prober will not be executed to detect other bootable partitions. 167s Systems on them will not be added to the GRUB boot configuration. 167s Check GRUB_DISABLE_OS_PROBER documentation entry. 167s Adding boot menu entry for UEFI Firmware Settings ... 167s done 167s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 167s W: Removing the running kernel 167s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 167s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 167s /etc/kernel/postrm.d/initramfs-tools: 167s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 167s /etc/kernel/postrm.d/zz-update-grub: 167s Sourcing file `/etc/default/grub' 167s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 167s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 167s Generating grub configuration file ... 167s Found linux image: /boot/vmlinuz-6.14.0-10-generic 167s Found initrd image: /boot/initrd.img-6.14.0-10-generic 168s Warning: os-prober will not be executed to detect other bootable partitions. 168s Systems on them will not be added to the GRUB boot configuration. 168s Check GRUB_DISABLE_OS_PROBER documentation entry. 168s Adding boot menu entry for UEFI Firmware Settings ... 168s done 168s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 168s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 170s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 170s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 170s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 170s Processing triggers for libc-bin (2.41-1ubuntu1) ... 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 170s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 170s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 170s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 170s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 170s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 170s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 170s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 170s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 171s autopkgtest [22:03:09]: upgrading testbed (apt dist-upgrade and autopurge) 171s Reading package lists... 171s Building dependency tree... 171s Reading state information... 172s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 172s Starting 2 pkgProblemResolver with broken count: 0 172s Done 172s Entering ResolveByKeep 172s 172s Calculating upgrade... 173s The following packages will be upgraded: 173s libc-bin libc-dev-bin libc6 libc6-dev locales 173s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 173s Need to get 10.5 MB of archives. 173s After this operation, 1024 B of additional disk space will be used. 173s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 173s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 173s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 174s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 174s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 174s Preconfiguring packages ... 174s Fetched 10.5 MB in 1s (8807 kB/s) 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 174s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 174s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 174s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 174s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 174s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 175s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 175s Setting up libc6:amd64 (2.41-1ubuntu2) ... 175s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 175s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 175s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 175s Setting up libc-bin (2.41-1ubuntu2) ... 175s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 175s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 175s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 175s Setting up locales (2.41-1ubuntu2) ... 176s Generating locales (this might take a while)... 177s en_US.UTF-8... done 177s Generation complete. 177s Setting up libc-dev-bin (2.41-1ubuntu2) ... 177s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 177s Processing triggers for man-db (2.13.0-1) ... 178s Processing triggers for systemd (257.3-1ubuntu3) ... 179s Reading package lists... 179s Building dependency tree... 179s Reading state information... 179s Starting pkgProblemResolver with broken count: 0 179s Starting 2 pkgProblemResolver with broken count: 0 179s Done 180s Solving dependencies... 180s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 180s autopkgtest [22:03:18]: rebooting testbed after setup commands that affected boot 203s autopkgtest [22:03:41]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 205s autopkgtest [22:03:43]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rhtslib 208s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rhtslib 3.2.0+dfsg-2 (dsc) [2153 B] 208s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rhtslib 3.2.0+dfsg-2 (tar) [4298 kB] 208s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rhtslib 3.2.0+dfsg-2 (diff) [4588 B] 208s gpgv: Signature made Sat Jan 11 21:12:47 2025 UTC 208s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 208s gpgv: issuer "crusoe@debian.org" 208s gpgv: Can't check signature: No public key 208s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rhtslib_3.2.0+dfsg-2.dsc: no acceptable signature found 208s autopkgtest [22:03:46]: testing package r-bioc-rhtslib version 3.2.0+dfsg-2 208s autopkgtest [22:03:46]: build not needed 212s autopkgtest [22:03:50]: test pkg-r-autopkgtest: preparing testbed 213s Reading package lists... 213s Building dependency tree... 213s Reading state information... 213s Starting pkgProblemResolver with broken count: 0 213s Starting 2 pkgProblemResolver with broken count: 0 213s Done 215s The following NEW packages will be installed: 215s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 215s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 215s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 215s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 215s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 215s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 215s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 215s libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev libdeflate0 215s libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 libgomp1 215s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 215s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 215s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 215s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 215s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 215s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 215s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 215s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 215s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev 215s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 215s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 215s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 215s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6 215s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 215s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 215s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 215s littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc 215s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 215s r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biocversion r-bioc-rhtslib 215s r-bioc-zlibbioc r-cran-base64enc r-cran-biocmanager r-cran-bookdown 215s r-cran-bslib r-cran-cachem r-cran-cli r-cran-commonmark r-cran-crayon 215s r-cran-digest r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs 215s r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-jquerylib 215s r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lifecycle r-cran-littler 215s r-cran-magrittr r-cran-memoise r-cran-mime r-cran-pkgkitten r-cran-promises 215s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rlang r-cran-rmarkdown 215s r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-tinytex r-cran-withr 215s r-cran-xfun r-cran-xtable r-cran-yaml t1utils tex-common texlive-base 215s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 215s xdg-utils zip zlib1g-dev 215s 0 upgraded, 196 newly installed, 0 to remove and 0 not upgraded. 215s Need to get 329 MB of archives. 215s After this operation, 1049 MB of additional disk space will be used. 215s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 215s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 215s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 215s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 215s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 215s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 215s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 215s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 215s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 215s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 215s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 215s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 215s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 215s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 215s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 215s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 215s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 216s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 216s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 216s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 216s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 216s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 217s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 217s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 217s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 217s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 217s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 217s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 217s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 217s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 217s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 217s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 217s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 217s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 217s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 217s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 217s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 217s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 217s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 217s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 217s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 217s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 217s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 218s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 218s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 218s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 218s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 218s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 218s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 218s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 218s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 218s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 218s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 218s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 218s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 218s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 218s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 218s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 218s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 218s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 218s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 218s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 218s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 218s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 218s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 218s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 218s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 218s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 218s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 218s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 218s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 218s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 218s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 218s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 218s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 218s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 218s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 218s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 218s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 218s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 218s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 218s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 218s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 218s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB] 218s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 218s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 219s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 219s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 219s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 219s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 219s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 219s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 219s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 219s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 219s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 219s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 219s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 219s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 219s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 219s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 219s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 219s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 219s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 219s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 219s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 219s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB] 219s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 219s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 219s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 219s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB] 219s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 220s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 220s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB] 220s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 220s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 220s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 220s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 220s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 220s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 220s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 220s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 220s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 220s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 220s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 220s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 220s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 220s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 220s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 220s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 221s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 221s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 221s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 221s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 221s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 221s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 221s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 222s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 222s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 222s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 222s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 222s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 222s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 222s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 222s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 222s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 222s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 222s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 223s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 223s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 223s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 223s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 223s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 223s Get:153 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 223s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 223s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 223s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 223s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 223s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 223s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 223s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 223s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 223s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 223s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 223s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 223s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 223s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 223s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 223s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 223s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 223s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 223s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 223s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 223s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 223s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 223s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 223s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 223s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 223s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 223s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 223s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 223s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 223s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 224s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 224s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 224s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 224s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 224s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB] 224s Get:188 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 224s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB] 224s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB] 225s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB] 225s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 228s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 228s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 228s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 228s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 229s Preconfiguring packages ... 229s Fetched 329 MB in 14s (22.7 MB/s) 229s Selecting previously unselected package libisl23:amd64. 229s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 229s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 229s Unpacking libisl23:amd64 (0.27-1) ... 229s Selecting previously unselected package libmpc3:amd64. 229s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 229s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 229s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 229s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 229s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 229s Selecting previously unselected package cpp-14. 229s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 229s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 229s Selecting previously unselected package cpp-x86-64-linux-gnu. 229s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 229s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 229s Selecting previously unselected package cpp. 229s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 229s Unpacking cpp (4:14.2.0-1ubuntu1) ... 229s Selecting previously unselected package libcc1-0:amd64. 229s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 229s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 229s Selecting previously unselected package libgomp1:amd64. 229s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 229s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 229s Selecting previously unselected package libitm1:amd64. 230s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 230s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 230s Selecting previously unselected package libasan8:amd64. 230s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 230s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 230s Selecting previously unselected package liblsan0:amd64. 230s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 230s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 230s Selecting previously unselected package libtsan2:amd64. 230s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 230s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 230s Selecting previously unselected package libubsan1:amd64. 230s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 230s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 230s Selecting previously unselected package libhwasan0:amd64. 230s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 230s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 230s Selecting previously unselected package libquadmath0:amd64. 230s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 230s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 230s Selecting previously unselected package libgcc-14-dev:amd64. 230s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 230s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 230s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 230s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 230s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 230s Selecting previously unselected package gcc-14. 230s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 230s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 230s Selecting previously unselected package gcc-x86-64-linux-gnu. 230s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 230s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 230s Selecting previously unselected package gcc. 230s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 230s Unpacking gcc (4:14.2.0-1ubuntu1) ... 230s Selecting previously unselected package libstdc++-14-dev:amd64. 230s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 230s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 231s Selecting previously unselected package g++-14-x86-64-linux-gnu. 231s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 231s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 231s Selecting previously unselected package g++-14. 231s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ... 231s Unpacking g++-14 (14.2.0-17ubuntu3) ... 231s Selecting previously unselected package g++-x86-64-linux-gnu. 231s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 231s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 231s Selecting previously unselected package g++. 231s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 231s Unpacking g++ (4:14.2.0-1ubuntu1) ... 231s Selecting previously unselected package build-essential. 231s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 231s Unpacking build-essential (12.10ubuntu1) ... 231s Selecting previously unselected package dctrl-tools. 231s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 231s Unpacking dctrl-tools (2.24-3build3) ... 231s Selecting previously unselected package fonts-dejavu-mono. 231s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 231s Unpacking fonts-dejavu-mono (2.37-8) ... 231s Selecting previously unselected package fonts-dejavu-core. 231s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 231s Unpacking fonts-dejavu-core (2.37-8) ... 231s Selecting previously unselected package fontconfig-config. 231s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 231s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 231s Selecting previously unselected package libfontconfig1:amd64. 231s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 231s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 231s Selecting previously unselected package fontconfig. 231s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 231s Unpacking fontconfig (2.15.0-2ubuntu1) ... 231s Selecting previously unselected package fonts-font-awesome. 231s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 231s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 231s Selecting previously unselected package fonts-glyphicons-halflings. 231s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 231s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 231s Selecting previously unselected package fonts-lmodern. 231s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ... 231s Unpacking fonts-lmodern (2.005-1) ... 231s Selecting previously unselected package fonts-mathjax. 231s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 231s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 232s Selecting previously unselected package libgfortran5:amd64. 232s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 232s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 232s Selecting previously unselected package libgfortran-14-dev:amd64. 232s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 232s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 232s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 232s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 232s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 232s Selecting previously unselected package gfortran-14. 232s Preparing to unpack .../039-gfortran-14_14.2.0-17ubuntu3_amd64.deb ... 232s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 232s Selecting previously unselected package gfortran-x86-64-linux-gnu. 232s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 232s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 232s Selecting previously unselected package gfortran. 232s Preparing to unpack .../041-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 232s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 232s Selecting previously unselected package icu-devtools. 232s Preparing to unpack .../042-icu-devtools_76.1-1ubuntu2_amd64.deb ... 232s Unpacking icu-devtools (76.1-1ubuntu2) ... 232s Selecting previously unselected package javascript-common. 232s Preparing to unpack .../043-javascript-common_12_all.deb ... 232s Unpacking javascript-common (12) ... 232s Selecting previously unselected package libio-string-perl. 232s Preparing to unpack .../044-libio-string-perl_1.08-4_all.deb ... 232s Unpacking libio-string-perl (1.08-4) ... 232s Selecting previously unselected package liblatex-tounicode-perl. 232s Preparing to unpack .../045-liblatex-tounicode-perl_0.55-1_all.deb ... 232s Unpacking liblatex-tounicode-perl (0.55-1) ... 232s Selecting previously unselected package libbibtex-parser-perl. 232s Preparing to unpack .../046-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 232s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 232s Selecting previously unselected package libblas3:amd64. 232s Preparing to unpack .../047-libblas3_3.12.1-2_amd64.deb ... 232s Unpacking libblas3:amd64 (3.12.1-2) ... 232s Selecting previously unselected package libblas-dev:amd64. 232s Preparing to unpack .../048-libblas-dev_3.12.1-2_amd64.deb ... 232s Unpacking libblas-dev:amd64 (3.12.1-2) ... 232s Selecting previously unselected package libbz2-dev:amd64. 232s Preparing to unpack .../049-libbz2-dev_1.0.8-6_amd64.deb ... 232s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 232s Selecting previously unselected package libpixman-1-0:amd64. 232s Preparing to unpack .../050-libpixman-1-0_0.44.0-3_amd64.deb ... 232s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 232s Selecting previously unselected package libxcb-render0:amd64. 232s Preparing to unpack .../051-libxcb-render0_1.17.0-2_amd64.deb ... 232s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 232s Selecting previously unselected package libxcb-shm0:amd64. 232s Preparing to unpack .../052-libxcb-shm0_1.17.0-2_amd64.deb ... 232s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 232s Selecting previously unselected package libxrender1:amd64. 232s Preparing to unpack .../053-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 232s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 232s Selecting previously unselected package libcairo2:amd64. 232s Preparing to unpack .../054-libcairo2_1.18.2-2_amd64.deb ... 232s Unpacking libcairo2:amd64 (1.18.2-2) ... 232s Selecting previously unselected package libdatrie1:amd64. 232s Preparing to unpack .../055-libdatrie1_0.2.13-3build1_amd64.deb ... 232s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 232s Selecting previously unselected package libdeflate0:amd64. 232s Preparing to unpack .../056-libdeflate0_1.23-1_amd64.deb ... 232s Unpacking libdeflate0:amd64 (1.23-1) ... 233s Selecting previously unselected package libdeflate-dev:amd64. 233s Preparing to unpack .../057-libdeflate-dev_1.23-1_amd64.deb ... 233s Unpacking libdeflate-dev:amd64 (1.23-1) ... 233s Selecting previously unselected package libgraphite2-3:amd64. 233s Preparing to unpack .../058-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 233s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 233s Selecting previously unselected package libharfbuzz0b:amd64. 233s Preparing to unpack .../059-libharfbuzz0b_10.2.0-1_amd64.deb ... 233s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 233s Selecting previously unselected package x11-common. 233s Preparing to unpack .../060-x11-common_1%3a7.7+23ubuntu3_all.deb ... 233s Unpacking x11-common (1:7.7+23ubuntu3) ... 233s Selecting previously unselected package libice6:amd64. 233s Preparing to unpack .../061-libice6_2%3a1.1.1-1_amd64.deb ... 233s Unpacking libice6:amd64 (2:1.1.1-1) ... 233s Selecting previously unselected package libicu-dev:amd64. 233s Preparing to unpack .../062-libicu-dev_76.1-1ubuntu2_amd64.deb ... 233s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 233s Selecting previously unselected package libjpeg-turbo8:amd64. 233s Preparing to unpack .../063-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 233s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 233s Selecting previously 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(10.45-1) ... 234s Selecting previously unselected package libpkgconf3:amd64. 234s Preparing to unpack .../101-libpkgconf3_1.8.1-4_amd64.deb ... 234s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 234s Selecting previously unselected package zlib1g-dev:amd64. 234s Preparing to unpack .../102-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 234s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 234s Selecting previously unselected package libpng-dev:amd64. 234s Preparing to unpack .../103-libpng-dev_1.6.47-1_amd64.deb ... 234s Unpacking libpng-dev:amd64 (1.6.47-1) ... 234s Selecting previously unselected package libpotrace0:amd64. 234s Preparing to unpack .../104-libpotrace0_1.16-2build1_amd64.deb ... 234s Unpacking libpotrace0:amd64 (1.16-2build1) ... 234s Selecting previously unselected package libptexenc1:amd64. 234s Preparing to unpack .../105-libptexenc1_2024.20240313.70630+ds-6_amd64.deb ... 234s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-6) ... 234s 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package node-normalize.css. 236s Preparing to unpack .../133-node-normalize.css_8.0.1-5_all.deb ... 236s Unpacking node-normalize.css (8.0.1-5) ... 236s Selecting previously unselected package pandoc-data. 236s Preparing to unpack .../134-pandoc-data_3.1.11.1-3build1_all.deb ... 236s Unpacking pandoc-data (3.1.11.1-3build1) ... 236s Selecting previously unselected package pandoc. 236s Preparing to unpack .../135-pandoc_3.1.11.1+ds-2_amd64.deb ... 236s Unpacking pandoc (3.1.11.1+ds-2) ... 236s Selecting previously unselected package liblzma-dev:amd64. 236s Preparing to unpack .../136-liblzma-dev_5.6.4-1_amd64.deb ... 236s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 236s Selecting previously unselected package pkgconf-bin. 236s Preparing to unpack .../137-pkgconf-bin_1.8.1-4_amd64.deb ... 236s Unpacking pkgconf-bin (1.8.1-4) ... 236s Selecting previously unselected package pkgconf:amd64. 236s Preparing to unpack .../138-pkgconf_1.8.1-4_amd64.deb ... 236s Unpacking pkgconf:amd64 (1.8.1-4) ... 237s Selecting previously unselected package libtirpc-dev:amd64. 237s Preparing to unpack .../139-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 237s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 237s Selecting previously unselected package r-base-dev. 237s Preparing to unpack .../140-r-base-dev_4.4.3-1_all.deb ... 237s Unpacking r-base-dev (4.4.3-1) ... 237s Selecting previously unselected package pkg-r-autopkgtest. 237s Preparing to unpack .../141-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 237s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 237s Selecting previously unselected package r-bioc-biocgenerics. 237s Preparing to unpack .../142-r-bioc-biocgenerics_0.52.0-2_all.deb ... 237s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 237s Selecting previously unselected package r-cran-base64enc. 237s Preparing to unpack .../143-r-cran-base64enc_0.1-3-3_amd64.deb ... 237s Unpacking r-cran-base64enc (0.1-3-3) ... 237s Selecting previously unselected package r-cran-digest. 237s Preparing to unpack .../144-r-cran-digest_0.6.37-1_amd64.deb ... 237s Unpacking r-cran-digest (0.6.37-1) ... 237s Selecting previously unselected package r-cran-fastmap. 237s Preparing to unpack .../145-r-cran-fastmap_1.2.0-1_amd64.deb ... 237s Unpacking r-cran-fastmap (1.2.0-1) ... 237s Selecting previously unselected package r-cran-rlang. 237s Preparing to unpack .../146-r-cran-rlang_1.1.5-1_amd64.deb ... 237s Unpacking r-cran-rlang (1.1.5-1) ... 237s Selecting previously unselected package r-cran-htmltools. 237s Preparing to unpack .../147-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 237s Unpacking r-cran-htmltools (0.5.8.1-1) ... 237s Selecting previously unselected package r-cran-evaluate. 237s Preparing to unpack .../148-r-cran-evaluate_1.0.3-1_all.deb ... 237s Unpacking r-cran-evaluate (1.0.3-1) ... 237s Selecting previously unselected package r-cran-xfun. 237s Preparing to unpack .../149-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 237s Unpacking r-cran-xfun (0.51+dfsg-1) ... 237s Selecting previously unselected package r-cran-highr. 237s Preparing to unpack .../150-r-cran-highr_0.11+dfsg-1_all.deb ... 237s Unpacking r-cran-highr (0.11+dfsg-1) ... 237s Selecting previously unselected package r-cran-yaml. 237s Preparing to unpack .../151-r-cran-yaml_2.3.10-1_amd64.deb ... 237s Unpacking r-cran-yaml (2.3.10-1) ... 237s Selecting previously unselected package libjs-mathjax. 237s Preparing to unpack .../152-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 237s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 238s Selecting previously unselected package r-cran-knitr. 238s Preparing to unpack .../153-r-cran-knitr_1.49+dfsg-1_all.deb ... 238s Unpacking r-cran-knitr (1.49+dfsg-1) ... 238s Selecting previously unselected package r-cran-cachem. 238s Preparing to unpack .../154-r-cran-cachem_1.1.0-1_amd64.deb ... 238s Unpacking r-cran-cachem (1.1.0-1) ... 238s Selecting previously unselected package r-cran-jquerylib. 238s Preparing to unpack .../155-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 238s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 238s Selecting previously unselected package r-cran-jsonlite. 238s Preparing to unpack .../156-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 238s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 238s Selecting previously unselected package r-cran-cli. 238s Preparing to unpack .../157-r-cran-cli_3.6.4-1_amd64.deb ... 238s Unpacking r-cran-cli (3.6.4-1) ... 238s Selecting previously unselected package r-cran-glue. 238s Preparing to unpack .../158-r-cran-glue_1.8.0-1_amd64.deb ... 238s Unpacking r-cran-glue (1.8.0-1) ... 238s Selecting previously unselected package r-cran-lifecycle. 238s Preparing to unpack .../159-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 238s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 238s Selecting previously unselected package r-cran-memoise. 238s Preparing to unpack .../160-r-cran-memoise_2.0.1-1_all.deb ... 238s Unpacking r-cran-memoise (2.0.1-1) ... 238s Selecting previously unselected package r-cran-mime. 238s Preparing to unpack .../161-r-cran-mime_0.12-2_amd64.deb ... 238s Unpacking r-cran-mime (0.12-2) ... 238s Selecting previously unselected package r-cran-fs. 238s Preparing to unpack .../162-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 238s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 238s Selecting previously unselected package r-cran-r6. 238s Preparing to unpack .../163-r-cran-r6_2.6.1-1_all.deb ... 238s Unpacking r-cran-r6 (2.6.1-1) ... 238s Selecting previously unselected package r-cran-rappdirs. 238s Preparing to unpack .../164-r-cran-rappdirs_0.3.3-1_amd64.deb ... 238s Unpacking r-cran-rappdirs (0.3.3-1) ... 238s Selecting previously unselected package r-cran-sass. 238s Preparing to unpack .../165-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 238s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 238s Selecting previously unselected package r-cran-bslib. 238s Preparing to unpack .../166-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 238s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 238s Selecting previously unselected package 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(14.2.0-17ubuntu3) ... 246s Setting up r-cran-r6 (2.6.1-1) ... 246s Setting up r-cran-pkgkitten (0.2.4-1) ... 246s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 246s Setting up texlive-base (2024.20250114-1) ... 247s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 247s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 247s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 247s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 248s Setting up r-cran-magrittr (2.0.3-1) ... 248s Setting up r-cran-rappdirs (0.3.3-1) ... 248s Setting up r-cran-littler (0.3.20-2) ... 248s Setting up r-cran-fs (1.6.5+dfsg-1) ... 248s Setting up r-cran-rcpp (1.0.14-1) ... 248s Setting up r-bioc-biocgenerics (0.52.0-2) ... 248s Setting up r-cran-rlang (1.1.5-1) ... 248s Setting up littler (0.3.20-2) ... 248s Setting up r-cran-xfun (0.51+dfsg-1) ... 248s Setting up r-cran-withr (3.0.2+dfsg-1) ... 248s Setting up r-cran-mime (0.12-2) ... 248s Setting up r-cran-base64enc (0.1-3-3) ... 248s Setting up r-cran-digest (0.6.37-1) ... 248s Setting up r-cran-yaml (2.3.10-1) ... 248s Setting up r-cran-evaluate (1.0.3-1) ... 248s Setting up r-cran-highr (0.11+dfsg-1) ... 248s Setting up r-cran-glue (1.8.0-1) ... 248s Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 248s Setting up r-cran-xtable (1:1.8-4-2) ... 248s Setting up r-cran-cli (3.6.4-1) ... 248s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 248s Setting up r-bioc-biocversion (3.20.0-2) ... 248s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 248s Setting up gcc (4:14.2.0-1ubuntu1) ... 248s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 248s Setting up r-cran-fastmap (1.2.0-1) ... 248s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 248s Setting up texlive-latex-base (2024.20250114-1) ... 248s Setting up r-cran-later (1.4.1+dfsg-1) ... 248s Setting up r-cran-htmltools (0.5.8.1-1) ... 248s Setting up r-cran-tinytex (0.56-1) ... 248s Setting up r-cran-knitr (1.49+dfsg-1) ... 248s Setting up g++ (4:14.2.0-1ubuntu1) ... 248s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 248s Setting up r-cran-cachem (1.1.0-1) ... 248s Setting up r-cran-sass (0.4.9+dfsg-1) ... 248s Setting up build-essential (12.10ubuntu1) ... 248s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 248s Setting up r-cran-fontawesome (0.5.3-1) ... 248s Setting up gfortran (4:14.2.0-1ubuntu1) ... 248s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 248s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 248s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 248s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 248s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 248s Setting up texlive-bibtex-extra (2024.20250114-1) ... 248s Setting up r-cran-memoise (2.0.1-1) ... 248s Setting up r-cran-promises (1.3.2+dfsg-1) ... 248s Setting up r-base-dev (4.4.3-1) ... 248s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 248s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 248s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 248s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 248s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 248s Setting up r-cran-bookdown (0.42+dfsg-1) ... 248s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 248s Processing triggers for libc-bin (2.41-1ubuntu2) ... 248s Processing triggers for man-db (2.13.0-1) ... 250s Processing triggers for install-info (7.1.1-1) ... 250s Processing triggers for tex-common (6.19) ... 250s Running updmap-sys. This may take some time... done. 250s Running mktexlsr /var/lib/texmf ... done. 250s Building format(s) --all. 278s This may take some time... done. 279s autopkgtest [22:04:57]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 279s autopkgtest [22:04:57]: test pkg-r-autopkgtest: [----------------------- 279s Test: Try to load the R library Rhtslib 279s 279s R version 4.4.3 (2025-02-28) -- "Trophy Case" 279s Copyright (C) 2025 The R Foundation for Statistical Computing 279s Platform: x86_64-pc-linux-gnu 279s 279s R is free software and comes with ABSOLUTELY NO WARRANTY. 279s You are welcome to redistribute it under certain conditions. 279s Type 'license()' or 'licence()' for distribution details. 279s 279s R is a collaborative project with many contributors. 279s Type 'contributors()' for more information and 279s 'citation()' on how to cite R or R packages in publications. 279s 279s Type 'demo()' for some demos, 'help()' for on-line help, or 279s 'help.start()' for an HTML browser interface to help. 279s Type 'q()' to quit R. 279s 279s > library('Rhtslib') 279s Rhtslib htslib version 1.18 279s > 279s > 279s Other tests are currently unsupported! 279s They will be progressively added. 279s autopkgtest [22:04:57]: test pkg-r-autopkgtest: -----------------------] 280s pkg-r-autopkgtest PASS 280s autopkgtest [22:04:58]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 280s autopkgtest [22:04:58]: @@@@@@@@@@@@@@@@@@@@ summary 280s pkg-r-autopkgtest PASS 298s nova [W] Skipping flock for amd64 298s Creating nova instance adt-plucky-amd64-r-bioc-rhtslib-20250315-220018-juju-7f2275-prod-proposed-migration-environment-20-1383975c-e441-4e68-8b81-93d73eb8d23b from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 298s nova [W] Timed out waiting for 150688eb-acaa-4ab0-ae7b-e374a163d528 to get deleted.