0s autopkgtest [00:05:48]: starting date and time: 2024-11-04 00:05:48+0000 0s autopkgtest [00:05:48]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [00:05:48]: host juju-7f2275-prod-proposed-migration-environment-14; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.vcu_zhag/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-httr2,src:r-cran-biocmanager,src:r-cran-commonmark,src:r-cran-curl,src:r-cran-datawizard,src:r-cran-gdtools,src:r-cran-insight,src:r-cran-ps,src:r-cran-thematic,src:r-cran-vcr,src:r-cran-xfun --apt-upgrade r-bioc-rcpi --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-cran-httr2/1.0.5-1 r-cran-biocmanager/1.30.25+dfsg-1 r-cran-commonmark/1.9.2-1 r-cran-curl/5.2.3+dfsg-1 r-cran-datawizard/0.12.3+dfsg-1 r-cran-gdtools/0.4.0-1 r-cran-insight/0.20.4+dfsg-1 r-cran-ps/1.8.0-1 r-cran-thematic/0.1.6-1 r-cran-vcr/1.6.0+dfsg-1 r-cran-xfun/0.48+dfsg-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-14@lcy02-23.secgroup --name adt-plucky-amd64-r-bioc-rcpi-20241104-000548-juju-7f2275-prod-proposed-migration-environment-14-20fc46e0-32d9-42a8-a1a0-0b63c937b620 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-14 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 45s autopkgtest [00:06:33]: testbed dpkg architecture: amd64 45s autopkgtest [00:06:33]: testbed apt version: 2.9.8 45s autopkgtest [00:06:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 45s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 45s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 45s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [177 kB] 45s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [31.2 kB] 45s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [2268 kB] 46s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [165 kB] 46s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [238 kB] 46s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 46s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [833 kB] 46s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [1715 kB] 46s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [18.1 kB] 46s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [58.6 kB] 46s Fetched 5618 kB in 1s (9519 kB/s) 46s Reading package lists... 49s Reading package lists... 49s Building dependency tree... 49s Reading state information... 49s Calculating upgrade... 49s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 49s Reading package lists... 49s Building dependency tree... 49s Reading state information... 50s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 50s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 50s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 50s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 50s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 52s Reading package lists... 52s Reading package lists... 52s Building dependency tree... 52s Reading state information... 52s Calculating upgrade... 53s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 54s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 55s autopkgtest [00:06:43]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 55s autopkgtest [00:06:43]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rcpi 55s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rcpi 1.40.2+ds-1 (dsc) [2212 B] 55s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rcpi 1.40.2+ds-1 (tar) [1494 kB] 55s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rcpi 1.40.2+ds-1 (diff) [6848 B] 56s gpgv: Signature made Sat Sep 7 12:10:31 2024 UTC 56s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 56s gpgv: Can't check signature: No public key 56s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rcpi_1.40.2+ds-1.dsc: no acceptable signature found 56s autopkgtest [00:06:44]: testing package r-bioc-rcpi version 1.40.2+ds-1 56s autopkgtest [00:06:44]: build not needed 60s autopkgtest [00:06:48]: test pkg-r-autopkgtest: preparing testbed 60s Reading package lists... 60s Building dependency tree... 60s Reading state information... 61s Starting pkgProblemResolver with broken count: 0 61s Starting 2 pkgProblemResolver with broken count: 0 61s Done 61s The following additional packages will be installed: 61s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 61s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 61s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-14 61s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 61s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 61s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 61s javascript-common libasan8 libblas-dev libblas3 libbz2-dev libcairo2 61s libcc1-0 libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev 61s libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 61s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 61s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 61s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 61s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 61s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 61s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 61s liblapack-dev liblapack3 liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 61s libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 61s libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 61s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 61s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data 61s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 61s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler 61s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 61s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 61s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biostrings 61s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-go.db r-bioc-gosemsim 61s r-bioc-iranges r-bioc-keggrest r-bioc-pwalign r-bioc-rcpi r-bioc-s4vectors 61s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-askpass 61s r-cran-base64enc r-cran-bit r-cran-bit64 r-cran-blob r-cran-brio 61s r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-codetools 61s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 61s r-cran-desc r-cran-diffobj r-cran-digest r-cran-doparallel r-cran-evaluate 61s r-cran-fansi r-cran-fastmap r-cran-fontawesome r-cran-foreach r-cran-fs 61s r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 61s r-cran-httr2 r-cran-iterators r-cran-jquerylib r-cran-jsonlite r-cran-knitr 61s r-cran-later r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise 61s r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 61s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 61s r-cran-processx r-cran-promises r-cran-ps r-cran-r.methodss3 r-cran-r.oo 61s r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rematch2 61s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite 61s r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-sys r-cran-testthat 61s r-cran-tibble r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-waldo 61s r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml r-cran-yulab.utils unzip 61s x11-common xdg-utils zip zlib1g-dev 61s Suggested packages: 61s cpp-doc gcc-14-locales cpp-14-doc debtags g++-multilib g++-14-multilib 61s gcc-14-doc gcc-multilib manpages-dev autoconf automake libtool flex bison 61s gdb gcc-doc gcc-14-multilib gdb-x86-64-linux-gnu gfortran-multilib 61s gfortran-doc gfortran-14-multilib gfortran-14-doc libcoarrays-dev apache2 61s | lighttpd | httpd liblapack-doc icu-doc libjs-jquery-ui-docs 61s fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc 61s readline-doc libstdc++-14-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended 61s texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context 61s wkhtmltopdf librsvg2-bin groff ghc php python ruby libjs-katex 61s citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib 61s r-base-html texlive-base texlive-latex-base texlive-plain-generic 61s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 61s r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph r-bioc-biocstyle r-bioc-all 61s r-bioc-limma r-bioc-genomicranges r-bioc-delayedarray r-bioc-rsamtools 61s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-bioc-bsgenome 61s r-bioc-genomicfeatures r-cran-data.table r-bioc-genomicalignments 61s r-bioc-annotationhub r-cran-biocmanager r-cran-readr r-cran-tidyr 61s r-cran-tidyselect r-cran-rocr r-cran-markdown r-bioc-summarizedexperiment 61s r-cran-matrix r-bioc-shortread r-cran-rmariadb r-cran-roxygen2 r-cran-ff 61s r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-getopt r-cran-dplyr 61s r-cran-formattable r-cran-ggplot2 r-cran-nanotime r-cran-palmerpenguins 61s r-cran-scales r-cran-stringi r-cran-survival r-cran-units r-cran-vdiffr 61s r-cran-inline r-cran-spelling r-cran-bench r-cran-here r-cran-hms 61s r-cran-purrr r-cran-plm r-cran-zoo 61s Recommended packages: 61s bzip2-doc node-jquery libpng-tools r-recommended r-doc-html r-cran-covr 61s r-cran-future r-cran-ggplot2 r-cran-thematic r-cran-mockery r-cran-spelling 61s r-cran-htmlwidgets r-cran-rstudioapi r-cran-whoami r-cran-xml2 r-cran-bench 61s r-cran-decor r-cran-lobstr r-cran-progress r-cran-scales r-cran-webutils 61s r-cran-gh r-cran-runit r-cran-caret r-cran-mlbench r-cran-rpart 61s r-cran-lattice r-cran-unitizer r-cran-dplyr r-cran-rsvg r-cran-markdown 61s r-cran-testit r-cran-cairo r-cran-ragg r-cran-jpeg r-cran-readr r-cran-clipr 61s r-cran-docopt r-cran-webfakes r-cran-r.rsp r-cran-sf r-cran-formatr 61s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 61s r-cran-webshot r-cran-svglite node-highlight.js r-cran-lintr 61s r-cran-tidyverse r-cran-sodium r-cran-lubridate r-cran-bitops 61s r-cran-mathjaxr r-cran-remotes r-cran-usethis r-cran-purrr r-cran-pingr 61s r-cran-dygraphs r-cran-rsconnect r-cran-downlit r-cran-mockr r-cran-dbitest 61s r-cran-gert r-cran-hms r-cran-rvest r-cran-dt r-cran-data.table 61s r-cran-formattable r-cran-generics r-cran-pkgdown r-cran-zeallot r-cran-renv 61s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 61s x11-xserver-utils 62s The following NEW packages will be installed: 62s autopkgtest-satdep build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu 62s cpp-x86-64-linux-gnu dctrl-tools fontconfig fontconfig-config 62s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 62s fonts-glyphicons-halflings fonts-mathjax g++ g++-14 g++-14-x86-64-linux-gnu 62s g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu 62s gfortran gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu 62s icu-devtools javascript-common libasan8 libblas-dev libblas3 libbz2-dev 62s libcairo2 libcc1-0 libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 62s libgcc-14-dev libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3 62s libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 62s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 62s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 62s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 62s libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js 62s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 62s libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 liblerc4 62s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libpango-1.0-0 62s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 62s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 62s libpng-dev libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev 62s libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 62s libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 62s libxt6t64 littler node-bootstrap-sass node-html5shiv node-normalize.css 62s pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 62s r-base-dev r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics 62s r-bioc-biostrings r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-go.db 62s r-bioc-gosemsim r-bioc-iranges r-bioc-keggrest r-bioc-pwalign r-bioc-rcpi 62s r-bioc-s4vectors r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 62s r-cran-askpass r-cran-base64enc r-cran-bit r-cran-bit64 r-cran-blob 62s r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli 62s r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 62s r-cran-dbi r-cran-desc r-cran-diffobj r-cran-digest r-cran-doparallel 62s r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-fontawesome 62s r-cran-foreach r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools 62s r-cran-httpuv r-cran-httr r-cran-httr2 r-cran-iterators r-cran-jquerylib 62s r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lifecycle r-cran-littler 62s r-cran-magrittr r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 62s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 62s r-cran-plogr r-cran-png r-cran-praise r-cran-processx r-cran-promises 62s r-cran-ps r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 62s r-cran-rappdirs r-cran-rcpp r-cran-rematch2 r-cran-rjson r-cran-rlang 62s r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-sass r-cran-shiny 62s r-cran-sourcetools r-cran-sys r-cran-testthat r-cran-tibble r-cran-tinytex 62s r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-withr r-cran-xfun r-cran-xtable 62s r-cran-yaml r-cran-yulab.utils unzip x11-common xdg-utils zip zlib1g-dev 62s 0 upgraded, 225 newly installed, 0 to remove and 0 not upgraded. 62s Need to get 281 MB/281 MB of archives. 62s After this operation, 924 MB of additional disk space will be used. 62s Get:1 /tmp/autopkgtest.VAyWsF/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [752 B] 62s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 62s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 62s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-7ubuntu1 [11.9 MB] 62s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-7ubuntu1 [1026 B] 62s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 62s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 62s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-7ubuntu1 [47.6 kB] 62s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-7ubuntu1 [148 kB] 62s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-7ubuntu1 [29.1 kB] 62s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-7ubuntu1 [2998 kB] 62s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-7ubuntu1 [1316 kB] 62s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-7ubuntu1 [2733 kB] 62s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-7ubuntu1 [1177 kB] 62s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-7ubuntu1 [1634 kB] 62s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-7ubuntu1 [153 kB] 62s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-7ubuntu1 [2814 kB] 62s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-7ubuntu1 [23.4 MB] 62s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-7ubuntu1 [526 kB] 62s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 62s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 62s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-7ubuntu1 [2503 kB] 62s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-7ubuntu1 [13.4 MB] 62s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-7ubuntu1 [19.8 kB] 62s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 62s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 62s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 62s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 62s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 62s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 62s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 62s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 62s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 62s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 62s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 62s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 62s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-7ubuntu1 [909 kB] 62s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-7ubuntu1 [965 kB] 62s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-7ubuntu1 [12.6 MB] 62s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-7ubuntu1 [11.6 kB] 62s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1022 B] 62s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.1.0-2ubuntu1 [1172 B] 62s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 74.2-1ubuntu4 [213 kB] 62s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 11+nmu1 [5936 B] 62s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 62s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.0-3build2 [172 kB] 62s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 62s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.42.2-1build1 [279 kB] 62s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 62s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 62s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 62s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 62s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 62s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.21-1 [49.8 kB] 62s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.21-1 [56.9 kB] 62s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 62s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 9.0.0-1 [487 kB] 62s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 62s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.0.10-1build3 [41.4 kB] 62s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 74.2-1ubuntu4 [11.9 MB] 62s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 62s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu2 [295 kB] 62s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 62s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 62s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 62s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 62s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 62s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 62s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 62s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 62s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 62s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 62s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 62s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 62s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 62s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 62s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 62s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 62s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 62s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 62s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.0-3build2 [5249 kB] 63s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu2 [179 kB] 63s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.6-3build2 [166 kB] 63s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5-2 [384 kB] 63s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 63s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 63s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.54.0+ds-2 [235 kB] 63s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-2 [49.1 kB] 63s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-2 [28.8 kB] 63s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper1 amd64 1.1.29build1 [13.4 kB] 63s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 1.1.29build1 [8650 B] 63s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu3 [214 kB] 63s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu3 [201 kB] 63s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu3 [6768 B] 63s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.42-4ubuntu3 [747 kB] 63s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-3ubuntu1 [31.0 kB] 63s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 63s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.44-1 [266 kB] 63s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-5 [169 kB] 63s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 63s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.3-1build3 [15.7 kB] 63s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1build1 [988 kB] 63s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 63s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 63s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 63s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 63s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 63s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.14-1build1 [779 kB] 63s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 63s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14 [174 kB] 63s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 63s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 63s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.1-1 [28.5 MB] 63s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-1 [96.0 kB] 63s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-1 [2486 B] 63s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 63s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 63s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 63s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3 [78.7 kB] 63s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 63s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.2-2 [176 kB] 63s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-3ubuntu1 [21.2 kB] 63s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-3ubuntu1 [16.8 kB] 63s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 63s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.1-1 [4338 B] 63s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 63s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.50.0-2 [605 kB] 63s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biobase amd64 2.64.0-4 [2154 kB] 63s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4vectors amd64 0.42.1+dfsg-2 [1890 kB] 63s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-iranges amd64 2.38.1-1 [2298 kB] 63s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 63s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 63s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 63s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.4-1 [1708 kB] 63s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 63s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 63s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 63s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 63s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 63s Get:140 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 63s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 63s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 63s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 63s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 63s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 63s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsqlite amd64 2.3.7-2 [1237 kB] 63s Get:147 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-curl amd64 5.2.3+dfsg-1 [179 kB] 63s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 63s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 63s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 63s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 63s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.2.0+dfsg-1 [405 kB] 63s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 63s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 63s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 63s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.50.0+dfsg-2 [10.1 kB] 63s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-xvector amd64 0.44.0-1 [624 kB] 63s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ucsc.utils all 1.0.0+ds-2 [77.0 kB] 63s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.12-1 [12.6 MB] 63s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodb all 1.40.1+dfsg-1 [3883 kB] 63s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 63s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biostrings amd64 2.72.1+dfsg-1 [13.2 MB] 64s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-keggrest all 1.44.1+dfsg-1 [188 kB] 64s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationdbi all 1.66.0-1 [4848 kB] 64s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-go.db all 3.19.1-1 [17.7 MB] 64s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.36-1 [199 kB] 64s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 64s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 64s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.0+dfsg-1 [228 kB] 64s Get:170 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-httr2 all 1.0.5-1 [641 kB] 64s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 64s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.oo all 1.26.0-1 [955 kB] 64s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.utils all 2.12.3-1 [1386 kB] 64s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.4+dfsg-1 [245 kB] 64s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yulab.utils all 0.1.4-1 [79.3 kB] 64s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 64s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.13-1 [1990 kB] 64s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-gosemsim amd64 2.30.2-1 [1095 kB] 64s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-pwalign amd64 1.0.0-2 [749 kB] 64s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 64s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-iterators all 1.0.14-1 [336 kB] 64s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-foreach all 1.5.2-1 [124 kB] 64s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-doparallel all 1.0.17-1 [189 kB] 64s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 64s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rcpi all 1.40.2+ds-1 [1162 kB] 64s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 64s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 64s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 64s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 64s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 64s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.7.0+dfsg-1 [4255 kB] 65s Get:192 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-ps amd64 1.8.0-1 [395 kB] 65s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.4-1 [353 kB] 65s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 65s Get:195 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-commonmark amd64 1.9.2-1 [134 kB] 65s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 65s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 65s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 0.24.0-1 [93.5 kB] 65s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 65s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 65s Get:201 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-xfun amd64 0.48+dfsg-1 [540 kB] 65s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 65s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 65s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.0+dfsg-1 [287 kB] 65s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 65s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.8-2 [108 kB] 65s Get:207 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 65s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.47+dfsg-1 [911 kB] 65s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 65s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 65s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.4-1 [212 kB] 65s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 65s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 65s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 65s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 65s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 65s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.51-1 [145 kB] 65s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 65s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 65s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 65s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 65s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.8.1.1+dfsg-1 [2873 kB] 65s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.27+dfsg-1 [1501 kB] 65s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 65s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.1.1-1 [1636 kB] 65s Preconfiguring packages ... 65s Fetched 281 MB in 3s (91.1 MB/s) 65s Selecting previously unselected package libisl23:amd64. 66s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75323 files and directories currently installed.) 66s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 66s Unpacking libisl23:amd64 (0.27-1) ... 66s Selecting previously unselected package libmpc3:amd64. 66s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 66s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 66s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 66s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-7ubuntu1_amd64.deb ... 66s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 66s Selecting previously unselected package cpp-14. 66s Preparing to unpack .../003-cpp-14_14.2.0-7ubuntu1_amd64.deb ... 66s Unpacking cpp-14 (14.2.0-7ubuntu1) ... 66s Selecting previously unselected package cpp-x86-64-linux-gnu. 66s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 66s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 66s Selecting previously unselected package cpp. 66s Preparing to unpack .../005-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 66s Unpacking cpp (4:14.1.0-2ubuntu1) ... 66s Selecting previously unselected package libcc1-0:amd64. 66s Preparing to unpack .../006-libcc1-0_14.2.0-7ubuntu1_amd64.deb ... 66s Unpacking libcc1-0:amd64 (14.2.0-7ubuntu1) ... 66s Selecting previously unselected package libgomp1:amd64. 66s Preparing to unpack .../007-libgomp1_14.2.0-7ubuntu1_amd64.deb ... 66s Unpacking libgomp1:amd64 (14.2.0-7ubuntu1) ... 66s Selecting previously unselected package libitm1:amd64. 66s Preparing to unpack .../008-libitm1_14.2.0-7ubuntu1_amd64.deb ... 66s Unpacking libitm1:amd64 (14.2.0-7ubuntu1) ... 66s Selecting previously unselected package libasan8:amd64. 66s Preparing to unpack .../009-libasan8_14.2.0-7ubuntu1_amd64.deb ... 66s Unpacking libasan8:amd64 (14.2.0-7ubuntu1) ... 66s Selecting previously unselected package liblsan0:amd64. 66s Preparing to unpack .../010-liblsan0_14.2.0-7ubuntu1_amd64.deb ... 66s Unpacking liblsan0:amd64 (14.2.0-7ubuntu1) ... 66s Selecting previously unselected package libtsan2:amd64. 66s Preparing to unpack .../011-libtsan2_14.2.0-7ubuntu1_amd64.deb ... 66s Unpacking libtsan2:amd64 (14.2.0-7ubuntu1) ... 66s Selecting previously unselected package libubsan1:amd64. 66s Preparing to unpack .../012-libubsan1_14.2.0-7ubuntu1_amd64.deb ... 66s Unpacking libubsan1:amd64 (14.2.0-7ubuntu1) ... 66s Selecting previously unselected package libhwasan0:amd64. 66s Preparing to unpack .../013-libhwasan0_14.2.0-7ubuntu1_amd64.deb ... 66s Unpacking libhwasan0:amd64 (14.2.0-7ubuntu1) ... 66s Selecting previously unselected package libquadmath0:amd64. 66s Preparing to unpack .../014-libquadmath0_14.2.0-7ubuntu1_amd64.deb ... 66s Unpacking libquadmath0:amd64 (14.2.0-7ubuntu1) ... 66s Selecting previously unselected package libgcc-14-dev:amd64. 66s Preparing to unpack .../015-libgcc-14-dev_14.2.0-7ubuntu1_amd64.deb ... 66s Unpacking libgcc-14-dev:amd64 (14.2.0-7ubuntu1) ... 66s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 66s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-7ubuntu1_amd64.deb ... 66s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 67s Selecting previously unselected package gcc-14. 67s Preparing to unpack .../017-gcc-14_14.2.0-7ubuntu1_amd64.deb ... 67s Unpacking gcc-14 (14.2.0-7ubuntu1) ... 67s Selecting previously unselected package gcc-x86-64-linux-gnu. 67s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 67s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 67s Selecting previously unselected package gcc. 67s Preparing to unpack .../019-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 67s Unpacking gcc (4:14.1.0-2ubuntu1) ... 67s Selecting previously unselected package libstdc++-14-dev:amd64. 67s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-7ubuntu1_amd64.deb ... 67s Unpacking libstdc++-14-dev:amd64 (14.2.0-7ubuntu1) ... 67s Selecting previously unselected package g++-14-x86-64-linux-gnu. 67s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-7ubuntu1_amd64.deb ... 67s Unpacking g++-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 67s Selecting previously unselected package g++-14. 67s Preparing to unpack .../022-g++-14_14.2.0-7ubuntu1_amd64.deb ... 67s Unpacking g++-14 (14.2.0-7ubuntu1) ... 67s Selecting previously unselected package g++-x86-64-linux-gnu. 67s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 67s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 67s Selecting previously unselected package g++. 67s Preparing to unpack .../024-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 67s Unpacking g++ (4:14.1.0-2ubuntu1) ... 67s Selecting previously unselected package build-essential. 67s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 67s Unpacking build-essential (12.10ubuntu1) ... 67s Selecting previously unselected package dctrl-tools. 67s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 67s Unpacking dctrl-tools (2.24-3build3) ... 68s Selecting previously unselected package fonts-dejavu-mono. 68s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 68s Unpacking fonts-dejavu-mono (2.37-8) ... 68s Selecting previously unselected package fonts-dejavu-core. 68s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 68s Unpacking fonts-dejavu-core (2.37-8) ... 68s Selecting previously unselected package fontconfig-config. 68s Preparing to unpack .../029-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 68s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 68s Selecting previously unselected package libfontconfig1:amd64. 68s Preparing to unpack .../030-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 68s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 68s Selecting previously unselected package fontconfig. 68s Preparing to unpack .../031-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ... 68s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 68s Selecting previously unselected package fonts-font-awesome. 68s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 68s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 68s Selecting previously unselected package fonts-glyphicons-halflings. 68s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 68s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 68s Selecting previously unselected package fonts-mathjax. 68s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 68s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 68s Selecting previously unselected package libgfortran5:amd64. 68s Preparing to unpack .../035-libgfortran5_14.2.0-7ubuntu1_amd64.deb ... 68s Unpacking libgfortran5:amd64 (14.2.0-7ubuntu1) ... 68s Selecting previously unselected package libgfortran-14-dev:amd64. 68s Preparing to unpack .../036-libgfortran-14-dev_14.2.0-7ubuntu1_amd64.deb ... 68s Unpacking libgfortran-14-dev:amd64 (14.2.0-7ubuntu1) ... 68s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 68s Preparing to unpack .../037-gfortran-14-x86-64-linux-gnu_14.2.0-7ubuntu1_amd64.deb ... 68s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 68s Selecting previously unselected package gfortran-14. 68s Preparing to unpack .../038-gfortran-14_14.2.0-7ubuntu1_amd64.deb ... 68s Unpacking gfortran-14 (14.2.0-7ubuntu1) ... 68s Selecting previously unselected package gfortran-x86-64-linux-gnu. 69s Preparing to unpack .../039-gfortran-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 69s Unpacking gfortran-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 69s Selecting previously unselected package gfortran. 69s Preparing to unpack .../040-gfortran_4%3a14.1.0-2ubuntu1_amd64.deb ... 69s Unpacking gfortran (4:14.1.0-2ubuntu1) ... 69s Selecting previously unselected package icu-devtools. 69s Preparing to unpack .../041-icu-devtools_74.2-1ubuntu4_amd64.deb ... 69s Unpacking icu-devtools (74.2-1ubuntu4) ... 69s Selecting previously unselected package javascript-common. 69s Preparing to unpack .../042-javascript-common_11+nmu1_all.deb ... 69s Unpacking javascript-common (11+nmu1) ... 69s Selecting previously unselected package libblas3:amd64. 69s Preparing to unpack .../043-libblas3_3.12.0-3build2_amd64.deb ... 69s Unpacking libblas3:amd64 (3.12.0-3build2) ... 69s Selecting previously unselected package libblas-dev:amd64. 69s Preparing to unpack .../044-libblas-dev_3.12.0-3build2_amd64.deb ... 69s Unpacking libblas-dev:amd64 (3.12.0-3build2) ... 69s Selecting previously unselected package libbz2-dev:amd64. 69s Preparing to unpack .../045-libbz2-dev_1.0.8-6_amd64.deb ... 69s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 69s Selecting previously unselected package libpixman-1-0:amd64. 69s Preparing to unpack .../046-libpixman-1-0_0.42.2-1build1_amd64.deb ... 69s Unpacking libpixman-1-0:amd64 (0.42.2-1build1) ... 69s Selecting previously unselected package libxcb-render0:amd64. 69s Preparing to unpack .../047-libxcb-render0_1.17.0-2_amd64.deb ... 69s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 69s Selecting previously unselected package libxcb-shm0:amd64. 69s Preparing to unpack .../048-libxcb-shm0_1.17.0-2_amd64.deb ... 69s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 69s Selecting previously unselected package libxrender1:amd64. 69s Preparing to unpack .../049-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 69s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 69s Selecting previously unselected package libcairo2:amd64. 69s Preparing to unpack .../050-libcairo2_1.18.2-2_amd64.deb ... 69s Unpacking libcairo2:amd64 (1.18.2-2) ... 69s Selecting previously unselected package libdatrie1:amd64. 69s Preparing to unpack .../051-libdatrie1_0.2.13-3build1_amd64.deb ... 69s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 69s Selecting previously unselected package libdeflate0:amd64. 69s Preparing to unpack .../052-libdeflate0_1.21-1_amd64.deb ... 69s Unpacking libdeflate0:amd64 (1.21-1) ... 69s Selecting previously unselected package libdeflate-dev:amd64. 69s Preparing to unpack .../053-libdeflate-dev_1.21-1_amd64.deb ... 69s Unpacking libdeflate-dev:amd64 (1.21-1) ... 69s Selecting previously unselected package libgraphite2-3:amd64. 69s Preparing to unpack .../054-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 69s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 69s Selecting previously unselected package libharfbuzz0b:amd64. 69s Preparing to unpack .../055-libharfbuzz0b_9.0.0-1_amd64.deb ... 69s Unpacking libharfbuzz0b:amd64 (9.0.0-1) ... 69s Selecting previously unselected package x11-common. 69s Preparing to unpack .../056-x11-common_1%3a7.7+23ubuntu3_all.deb ... 69s Unpacking x11-common (1:7.7+23ubuntu3) ... 69s Selecting previously unselected package libice6:amd64. 69s Preparing to unpack .../057-libice6_2%3a1.0.10-1build3_amd64.deb ... 69s Unpacking libice6:amd64 (2:1.0.10-1build3) ... 69s Selecting previously unselected package libicu-dev:amd64. 69s Preparing to unpack .../058-libicu-dev_74.2-1ubuntu4_amd64.deb ... 69s Unpacking libicu-dev:amd64 (74.2-1ubuntu4) ... 69s Selecting previously unselected package libjpeg-turbo8:amd64. 69s Preparing to unpack .../059-libjpeg-turbo8_2.1.5-2ubuntu2_amd64.deb ... 69s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 69s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 69s Preparing to unpack .../060-libjpeg-turbo8-dev_2.1.5-2ubuntu2_amd64.deb ... 69s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu2) ... 69s Selecting previously unselected package libjpeg8:amd64. 69s Preparing to unpack .../061-libjpeg8_8c-2ubuntu11_amd64.deb ... 69s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 69s Selecting previously unselected package libjpeg8-dev:amd64. 69s Preparing to unpack .../062-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 69s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 70s Selecting previously unselected package libjpeg-dev:amd64. 70s Preparing to unpack .../063-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 70s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 70s Selecting previously unselected package libjs-bootstrap. 70s Preparing to unpack .../064-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 70s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 70s Selecting previously unselected package libjs-popper.js. 70s Preparing to unpack .../065-libjs-popper.js_1.16.1+ds-6_all.deb ... 70s Unpacking libjs-popper.js (1.16.1+ds-6) ... 70s Selecting previously unselected package libjs-bootstrap4. 70s Preparing to unpack .../066-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 70s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 70s Selecting previously unselected package libjs-d3. 70s Preparing to unpack .../067-libjs-d3_3.5.17-4_all.deb ... 70s Unpacking libjs-d3 (3.5.17-4) ... 70s Selecting previously unselected package libjs-es5-shim. 70s Preparing to unpack .../068-libjs-es5-shim_4.6.7-2_all.deb ... 70s Unpacking libjs-es5-shim (4.6.7-2) ... 70s Selecting previously unselected package libjs-highlight.js. 70s Preparing to unpack .../069-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 70s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 70s Selecting previously unselected package libjs-jquery. 70s Preparing to unpack .../070-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 70s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 70s 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liblzma-dev:amd64. 73s Preparing to unpack .../119-liblzma-dev_5.6.2-2_amd64.deb ... 73s Unpacking liblzma-dev:amd64 (5.6.2-2) ... 73s Selecting previously unselected package pkgconf-bin. 73s Preparing to unpack .../120-pkgconf-bin_1.8.1-3ubuntu1_amd64.deb ... 73s Unpacking pkgconf-bin (1.8.1-3ubuntu1) ... 73s Selecting previously unselected package pkgconf:amd64. 73s Preparing to unpack .../121-pkgconf_1.8.1-3ubuntu1_amd64.deb ... 73s Unpacking pkgconf:amd64 (1.8.1-3ubuntu1) ... 73s Selecting previously unselected package libtirpc-dev:amd64. 73s Preparing to unpack .../122-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 73s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 73s Selecting previously unselected package r-base-dev. 73s Preparing to unpack .../123-r-base-dev_4.4.1-1_all.deb ... 73s Unpacking r-base-dev (4.4.1-1) ... 73s Selecting previously unselected package pkg-r-autopkgtest. 73s Preparing to unpack .../124-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 73s Unpacking 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r-cran-plogr. 74s Preparing to unpack .../142-r-cran-plogr_0.2.0-3build1_all.deb ... 74s Unpacking r-cran-plogr (0.2.0-3build1) ... 74s Selecting previously unselected package r-cran-cpp11. 74s Preparing to unpack .../143-r-cran-cpp11_0.4.7-1_all.deb ... 74s Unpacking r-cran-cpp11 (0.4.7-1) ... 74s Selecting previously unselected package r-cran-rsqlite. 74s Preparing to unpack .../144-r-cran-rsqlite_2.3.7-2_amd64.deb ... 74s Unpacking r-cran-rsqlite (2.3.7-2) ... 74s Selecting previously unselected package r-cran-curl. 74s Preparing to unpack .../145-r-cran-curl_5.2.3+dfsg-1_amd64.deb ... 74s Unpacking r-cran-curl (5.2.3+dfsg-1) ... 74s Selecting previously unselected package r-cran-jsonlite. 74s Preparing to unpack .../146-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 74s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 74s Selecting previously unselected package r-cran-mime. 74s Preparing to unpack .../147-r-cran-mime_0.12-2_amd64.deb ... 74s Unpacking r-cran-mime (0.12-2) ... 74s Selecting previously unselected package r-cran-sys. 74s Preparing to unpack .../148-r-cran-sys_3.4.2-1_amd64.deb ... 74s Unpacking r-cran-sys (3.4.2-1) ... 74s Selecting previously unselected package r-cran-askpass. 74s Preparing to unpack .../149-r-cran-askpass_1.2.0-1_amd64.deb ... 74s Unpacking r-cran-askpass (1.2.0-1) ... 74s Selecting previously unselected package r-cran-openssl. 74s Preparing to unpack .../150-r-cran-openssl_2.2.0+dfsg-1_amd64.deb ... 74s Unpacking r-cran-openssl (2.2.0+dfsg-1) ... 74s Selecting previously unselected package r-cran-r6. 74s Preparing to unpack .../151-r-cran-r6_2.5.1-1_all.deb ... 74s Unpacking r-cran-r6 (2.5.1-1) ... 74s Selecting previously unselected package r-cran-httr. 74s Preparing to unpack .../152-r-cran-httr_1.4.7+dfsg-1_all.deb ... 74s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 74s Selecting previously unselected package r-cran-png. 74s Preparing to unpack .../153-r-cran-png_0.1-8-1build2_amd64.deb ... 74s Unpacking r-cran-png (0.1-8-1build2) ... 74s Selecting previously unselected package r-bioc-zlibbioc. 74s Preparing to unpack .../154-r-bioc-zlibbioc_1.50.0+dfsg-2_all.deb ... 74s Unpacking r-bioc-zlibbioc (1.50.0+dfsg-2) ... 74s Selecting previously unselected package r-bioc-xvector. 74s Preparing to unpack .../155-r-bioc-xvector_0.44.0-1_amd64.deb ... 74s Unpacking r-bioc-xvector (0.44.0-1) ... 74s Selecting previously unselected package r-bioc-ucsc.utils. 74s Preparing to unpack .../156-r-bioc-ucsc.utils_1.0.0+ds-2_all.deb ... 74s Unpacking r-bioc-ucsc.utils (1.0.0+ds-2) ... 74s Selecting previously unselected package r-bioc-genomeinfodbdata. 74s Preparing to unpack .../157-r-bioc-genomeinfodbdata_1.2.12-1_all.deb ... 74s Unpacking r-bioc-genomeinfodbdata (1.2.12-1) ... 74s Selecting previously unselected package r-bioc-genomeinfodb. 74s Preparing to unpack .../158-r-bioc-genomeinfodb_1.40.1+dfsg-1_all.deb ... 74s Unpacking r-bioc-genomeinfodb (1.40.1+dfsg-1) ... 74s Selecting previously unselected package r-cran-crayon. 74s Preparing to unpack .../159-r-cran-crayon_1.5.2-1_all.deb ... 74s Unpacking r-cran-crayon (1.5.2-1) ... 74s Selecting previously unselected package r-bioc-biostrings. 74s Preparing to unpack .../160-r-bioc-biostrings_2.72.1+dfsg-1_amd64.deb ... 74s Unpacking r-bioc-biostrings (2.72.1+dfsg-1) ... 75s Selecting previously unselected package r-bioc-keggrest. 75s Preparing to unpack .../161-r-bioc-keggrest_1.44.1+dfsg-1_all.deb ... 75s Unpacking r-bioc-keggrest (1.44.1+dfsg-1) ... 75s Selecting previously unselected package r-bioc-annotationdbi. 75s Preparing to unpack .../162-r-bioc-annotationdbi_1.66.0-1_all.deb ... 75s Unpacking r-bioc-annotationdbi (1.66.0-1) ... 75s Selecting previously unselected package r-bioc-go.db. 75s Preparing to unpack .../163-r-bioc-go.db_3.19.1-1_all.deb ... 75s Unpacking r-bioc-go.db (3.19.1-1) ... 75s Selecting previously unselected package r-cran-digest. 75s Preparing to unpack .../164-r-cran-digest_0.6.36-1_amd64.deb ... 75s Unpacking r-cran-digest (0.6.36-1) ... 75s Selecting previously unselected package r-cran-magrittr. 75s Preparing to unpack .../165-r-cran-magrittr_2.0.3-1_amd64.deb ... 75s Unpacking r-cran-magrittr (2.0.3-1) ... 75s Selecting previously unselected package r-cran-rappdirs. 75s Preparing to unpack .../166-r-cran-rappdirs_0.3.3-1_amd64.deb ... 75s Unpacking r-cran-rappdirs (0.3.3-1) ... 75s Selecting previously unselected package r-cran-withr. 75s Preparing to unpack .../167-r-cran-withr_3.0.0+dfsg-1_all.deb ... 75s Unpacking r-cran-withr (3.0.0+dfsg-1) ... 75s Selecting previously unselected package r-cran-httr2. 75s Preparing to unpack .../168-r-cran-httr2_1.0.5-1_all.deb ... 75s Unpacking r-cran-httr2 (1.0.5-1) ... 75s Selecting previously unselected package r-cran-r.methodss3. 75s Preparing to unpack .../169-r-cran-r.methodss3_1.8.2-1_all.deb ... 75s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 75s Selecting previously unselected package r-cran-r.oo. 75s Preparing to unpack .../170-r-cran-r.oo_1.26.0-1_all.deb ... 75s Unpacking r-cran-r.oo (1.26.0-1) ... 75s Selecting previously unselected package r-cran-r.utils. 75s Preparing to unpack .../171-r-cran-r.utils_2.12.3-1_all.deb ... 75s Unpacking r-cran-r.utils (2.12.3-1) ... 75s Selecting previously unselected package r-cran-fs. 75s Preparing to unpack .../172-r-cran-fs_1.6.4+dfsg-1_amd64.deb ... 75s Unpacking r-cran-fs (1.6.4+dfsg-1) ... 75s Selecting previously unselected package r-cran-yulab.utils. 75s Preparing to unpack .../173-r-cran-yulab.utils_0.1.4-1_all.deb ... 75s Unpacking r-cran-yulab.utils (0.1.4-1) ... 75s Selecting previously unselected package r-cran-pkgkitten. 76s Preparing to unpack .../174-r-cran-pkgkitten_0.2.4-1_all.deb ... 76s Unpacking r-cran-pkgkitten (0.2.4-1) ... 76s Selecting previously unselected package r-cran-rcpp. 76s Preparing to unpack .../175-r-cran-rcpp_1.0.13-1_amd64.deb ... 76s Unpacking r-cran-rcpp (1.0.13-1) ... 76s Selecting previously unselected package r-bioc-gosemsim. 76s Preparing to unpack .../176-r-bioc-gosemsim_2.30.2-1_amd64.deb ... 76s Unpacking r-bioc-gosemsim (2.30.2-1) ... 76s Selecting previously unselected package r-bioc-pwalign. 76s Preparing to unpack .../177-r-bioc-pwalign_1.0.0-2_amd64.deb ... 76s Unpacking r-bioc-pwalign (1.0.0-2) ... 76s Selecting previously unselected package r-cran-codetools. 76s Preparing to unpack .../178-r-cran-codetools_0.2-20-1_all.deb ... 76s Unpacking r-cran-codetools (0.2-20-1) ... 76s Selecting previously unselected package r-cran-iterators. 76s Preparing to unpack .../179-r-cran-iterators_1.0.14-1_all.deb ... 76s Unpacking r-cran-iterators (1.0.14-1) ... 76s Selecting previously unselected package r-cran-foreach. 76s Preparing to unpack .../180-r-cran-foreach_1.5.2-1_all.deb ... 76s Unpacking r-cran-foreach (1.5.2-1) ... 76s Selecting previously unselected package r-cran-doparallel. 76s Preparing to unpack .../181-r-cran-doparallel_1.0.17-1_all.deb ... 76s Unpacking r-cran-doparallel (1.0.17-1) ... 76s Selecting previously unselected package r-cran-rjson. 76s Preparing to unpack .../182-r-cran-rjson_0.2.21-1_amd64.deb ... 76s Unpacking r-cran-rjson (0.2.21-1) ... 76s Selecting previously unselected package r-bioc-rcpi. 76s Preparing to unpack .../183-r-bioc-rcpi_1.40.2+ds-1_all.deb ... 76s Unpacking r-bioc-rcpi (1.40.2+ds-1) ... 76s Selecting previously unselected package r-cran-base64enc. 76s Preparing to unpack .../184-r-cran-base64enc_0.1-3-3_amd64.deb ... 76s Unpacking r-cran-base64enc (0.1-3-3) ... 76s Selecting previously unselected package r-cran-brio. 76s Preparing to unpack .../185-r-cran-brio_1.1.5-1_amd64.deb ... 76s Unpacking r-cran-brio (1.1.5-1) ... 76s Selecting previously unselected package r-cran-htmltools. 76s Preparing to unpack .../186-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 76s Unpacking r-cran-htmltools (0.5.8.1-1) ... 76s Selecting previously unselected package r-cran-jquerylib. 76s Preparing to unpack .../187-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 76s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 76s Selecting previously unselected package r-cran-sass. 76s Preparing to unpack .../188-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 76s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 76s Selecting previously unselected package r-cran-bslib. 76s Preparing to unpack .../189-r-cran-bslib_0.7.0+dfsg-1_all.deb ... 76s Unpacking r-cran-bslib (0.7.0+dfsg-1) ... 76s Selecting previously unselected package r-cran-ps. 76s Preparing to unpack .../190-r-cran-ps_1.8.0-1_amd64.deb ... 76s Unpacking r-cran-ps (1.8.0-1) ... 76s Selecting previously unselected package r-cran-processx. 76s Preparing to unpack .../191-r-cran-processx_3.8.4-1_amd64.deb ... 76s Unpacking r-cran-processx (3.8.4-1) ... 76s Selecting previously unselected package r-cran-callr. 76s Preparing to unpack .../192-r-cran-callr_3.7.6-1_all.deb ... 76s Unpacking r-cran-callr (3.7.6-1) ... 76s Selecting previously unselected package r-cran-commonmark. 77s Preparing to unpack .../193-r-cran-commonmark_1.9.2-1_amd64.deb ... 77s Unpacking r-cran-commonmark (1.9.2-1) ... 77s Selecting previously unselected package r-cran-desc. 77s Preparing to unpack .../194-r-cran-desc_1.4.3-1_all.deb ... 77s Unpacking r-cran-desc (1.4.3-1) ... 77s Selecting previously unselected package r-cran-diffobj. 77s Preparing to unpack .../195-r-cran-diffobj_0.3.5-1_amd64.deb ... 77s Unpacking r-cran-diffobj (0.3.5-1) ... 77s Selecting previously unselected package r-cran-evaluate. 77s Preparing to unpack .../196-r-cran-evaluate_0.24.0-1_all.deb ... 77s Unpacking r-cran-evaluate (0.24.0-1) ... 77s Selecting previously unselected package r-cran-fansi. 77s Preparing to unpack .../197-r-cran-fansi_1.0.5-1_amd64.deb ... 77s Unpacking r-cran-fansi (1.0.5-1) ... 77s Selecting previously unselected package r-cran-fontawesome. 77s Preparing to unpack .../198-r-cran-fontawesome_0.5.2-1_all.deb ... 77s Unpacking r-cran-fontawesome (0.5.2-1) ... 77s Selecting previously unselected package r-cran-xfun. 77s Preparing to unpack .../199-r-cran-xfun_0.48+dfsg-1_amd64.deb ... 77s Unpacking r-cran-xfun (0.48+dfsg-1) ... 77s Selecting previously unselected package r-cran-highr. 77s Preparing to unpack .../200-r-cran-highr_0.11+dfsg-1_all.deb ... 77s Unpacking r-cran-highr (0.11+dfsg-1) ... 77s Selecting previously unselected package r-cran-later. 77s Preparing to unpack .../201-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 77s Unpacking r-cran-later (1.3.2+dfsg-1) ... 77s Selecting previously unselected package r-cran-promises. 77s Preparing to unpack .../202-r-cran-promises_1.3.0+dfsg-1_amd64.deb ... 77s Unpacking r-cran-promises (1.3.0+dfsg-1) ... 77s Selecting previously unselected package r-cran-httpuv. 77s Preparing to unpack .../203-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 77s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 77s Selecting previously unselected package r-cran-yaml. 77s Preparing to unpack .../204-r-cran-yaml_2.3.8-2_amd64.deb ... 77s Unpacking r-cran-yaml (2.3.8-2) ... 77s Selecting previously unselected package libjs-mathjax. 77s Preparing to unpack .../205-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 77s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 78s Selecting previously unselected package r-cran-knitr. 78s Preparing to unpack .../206-r-cran-knitr_1.47+dfsg-1_all.deb ... 78s Unpacking r-cran-knitr (1.47+dfsg-1) ... 78s Selecting previously unselected package r-cran-utf8. 78s Preparing to unpack .../207-r-cran-utf8_1.2.4-1_amd64.deb ... 78s Unpacking r-cran-utf8 (1.2.4-1) ... 78s Selecting previously unselected package r-cran-pillar. 78s Preparing to unpack .../208-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 78s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 78s Selecting previously unselected package r-cran-pkgbuild. 78s Preparing to unpack .../209-r-cran-pkgbuild_1.4.4-1_all.deb ... 78s Unpacking r-cran-pkgbuild (1.4.4-1) ... 78s Selecting previously unselected package r-cran-rprojroot. 78s Preparing to unpack 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unselected package libjs-modernizr. 78s Preparing to unpack .../216-libjs-modernizr_3.13.0-0.1_all.deb ... 78s Unpacking libjs-modernizr (3.13.0-0.1) ... 78s Selecting previously unselected package r-cran-xtable. 78s Preparing to unpack .../217-r-cran-xtable_1%3a1.8-4-2_all.deb ... 78s Unpacking r-cran-xtable (1:1.8-4-2) ... 78s Selecting previously unselected package r-cran-sourcetools. 78s Preparing to unpack .../218-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 78s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 78s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 78s Preparing to unpack .../219-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 78s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 78s Selecting previously unselected package r-cran-shiny. 78s Preparing to unpack .../220-r-cran-shiny_1.8.1.1+dfsg-1_all.deb ... 78s Unpacking r-cran-shiny (1.8.1.1+dfsg-1) ... 78s Selecting previously unselected package r-cran-rmarkdown. 78s Preparing to unpack .../221-r-cran-rmarkdown_2.27+dfsg-1_all.deb ... 78s Unpacking r-cran-rmarkdown (2.27+dfsg-1) ... 79s Selecting previously unselected package r-cran-waldo. 79s Preparing to unpack .../222-r-cran-waldo_0.5.2-1build1_all.deb ... 79s Unpacking r-cran-waldo (0.5.2-1build1) ... 79s Selecting previously unselected package r-cran-testthat. 79s Preparing to unpack .../223-r-cran-testthat_3.2.1.1-1_amd64.deb ... 79s Unpacking r-cran-testthat (3.2.1.1-1) ... 79s Selecting previously unselected package autopkgtest-satdep. 79s Preparing to unpack .../224-1-autopkgtest-satdep.deb ... 79s Unpacking autopkgtest-satdep (0) ... 79s Setting up libjs-json (0~20221030+~1.0.8-1) ... 79s Setting up javascript-common (11+nmu1) ... 79s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 79s Setting up libpixman-1-0:amd64 (0.42.2-1build1) ... 79s Setting up libsharpyuv0:amd64 (1.4.0-0.1) ... 79s Setting up libpaper1:amd64 (1.1.29build1) ... 79s 79s Creating config file /etc/papersize 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libjs-modernizr (3.13.0-0.1) ... 79s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 79s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu3) ... 79s Setting up libjs-es5-shim (4.6.7-2) ... 79s Setting up zip (3.0-14) ... 79s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu3) ... 79s Setting up libblas3:amd64 (3.12.0-3build2) ... 79s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 79s Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 79s Setting up libpkgconf3:amd64 (1.8.1-3ubuntu1) ... 79s Setting up libquadmath0:amd64 (14.2.0-7ubuntu1) ... 79s Setting up libjs-d3 (3.5.17-4) ... 79s Setting up fonts-dejavu-mono (2.37-8) ... 79s Setting up libmpc3:amd64 (1.3.1-1build2) ... 79s Setting up libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 79s Setting up icu-devtools (74.2-1ubuntu4) ... 79s Setting up fonts-dejavu-core (2.37-8) ... 79s Setting up pkgconf-bin (1.8.1-3ubuntu1) ... 79s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 79s Setting up libgfortran5:amd64 (14.2.0-7ubuntu1) ... 79s Setting up libwebp7:amd64 (1.4.0-0.1) ... 79s Setting up liblzma-dev:amd64 (5.6.2-2) ... 79s Setting up libubsan1:amd64 (14.2.0-7ubuntu1) ... 79s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 79s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu3) ... 79s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 79s Setting up libhwasan0:amd64 (14.2.0-7ubuntu1) ... 79s Setting up libasan8:amd64 (14.2.0-7ubuntu1) ... 79s Setting up liblua5.4-0:amd64 (5.4.6-3build2) ... 79s Setting up libharfbuzz0b:amd64 (9.0.0-1) ... 79s Setting up libthai-data (0.1.29-2build1) ... 79s Setting up node-bootstrap-sass (3.4.3-2) ... 79s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 79s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 79s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 79s Setting up pandoc-data (3.1.11.1-3) ... 79s Setting up libtsan2:amd64 (14.2.0-7ubuntu1) ... 79s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 79s Setting up libisl23:amd64 (0.27-1) ... 79s Setting up libdeflate-dev:amd64 (1.21-1) ... 79s Setting up node-normalize.css (8.0.1-5) ... 79s Setting up libicu-dev:amd64 (74.2-1ubuntu4) ... 79s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 79s Setting up xdg-utils (1.2.1-0ubuntu1) ... 79s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 79s Setting up libcc1-0:amd64 (14.2.0-7ubuntu1) ... 79s Setting up liblsan0:amd64 (14.2.0-7ubuntu1) ... 79s Setting up libblas-dev:amd64 (3.12.0-3build2) ... 79s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 79s Setting up dctrl-tools (2.24-3build3) ... 79s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 79s Setting up libitm1:amd64 (14.2.0-7ubuntu1) ... 79s Setting up libbz2-dev:amd64 (1.0.8-6) ... 79s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 79s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 79s Setting up libice6:amd64 (2:1.0.10-1build3) ... 79s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu2) ... 79s Setting up liblapack3:amd64 (3.12.0-3build2) ... 79s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 79s Setting up libpcre2-dev:amd64 (10.42-4ubuntu3) ... 79s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 80s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 80s Setting up libpng-dev:amd64 (1.6.44-1) ... 80s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 80s Setting up pkgconf:amd64 (1.8.1-3ubuntu1) ... 80s Setting up libthai0:amd64 (0.1.29-2build1) ... 80s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 80s Setting up pandoc (3.1.11.1+ds-2) ... 80s Setting up liblapack-dev:amd64 (3.12.0-3build2) ... 80s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 80s Setting up cpp-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 80s Setting up cpp-14 (14.2.0-7ubuntu1) ... 80s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 80s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 80s Setting up libgcc-14-dev:amd64 (14.2.0-7ubuntu1) ... 80s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 80s Setting up libstdc++-14-dev:amd64 (14.2.0-7ubuntu1) ... 80s Setting up libsm6:amd64 (2:1.2.3-1build3) ... 80s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 80s Setting up libgfortran-14-dev:amd64 (14.2.0-7ubuntu1) ... 80s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 82s Regenerating fonts cache... done. 82s Setting up libxft2:amd64 (2.3.6-1build1) ... 82s Setting up libtk8.6:amd64 (8.6.14-1build1) ... 82s Setting up libpango-1.0-0:amd64 (1.54.0+ds-2) ... 82s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 82s Setting up libcairo2:amd64 (1.18.2-2) ... 82s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ... 82s Setting up cpp (4:14.1.0-2ubuntu1) ... 82s Setting up gcc-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 82s Setting up libpangoft2-1.0-0:amd64 (1.54.0+ds-2) ... 82s Setting up libpangocairo-1.0-0:amd64 (1.54.0+ds-2) ... 82s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 82s Setting up gcc-14 (14.2.0-7ubuntu1) ... 82s Setting up gfortran-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 82s Setting up r-base-core (4.4.1-1) ... 82s 82s Creating config file /etc/R/Renviron with new version 82s Setting up r-cran-crayon (1.5.2-1) ... 82s Setting up r-cran-sourcetools (0.1.7-1-1) ... 82s Setting up r-cran-ps (1.8.0-1) ... 82s Setting up g++-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 82s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 82s Setting up r-cran-commonmark (1.9.2-1) ... 82s Setting up g++-14 (14.2.0-7ubuntu1) ... 82s Setting up r-cran-r6 (2.5.1-1) ... 82s Setting up r-cran-pkgkitten (0.2.4-1) ... 82s Setting up gfortran-14 (14.2.0-7ubuntu1) ... 82s Setting up r-cran-magrittr (2.0.3-1) ... 82s Setting up r-cran-rappdirs (0.3.3-1) ... 82s Setting up r-bioc-genomeinfodbdata (1.2.12-1) ... 82s Setting up r-cran-littler (0.3.20-1) ... 82s Setting up r-cran-fs (1.6.4+dfsg-1) ... 82s Setting up r-cran-rcpp (1.0.13-1) ... 82s Setting up r-cran-curl (5.2.3+dfsg-1) ... 82s Setting up r-cran-codetools (0.2-20-1) ... 82s Setting up r-cran-brio (1.1.5-1) ... 82s Setting up r-cran-diffobj (0.3.5-1) ... 82s Setting up r-bioc-biocgenerics (0.50.0-2) ... 82s Setting up r-cran-rlang (1.1.4-1) ... 82s Setting up littler (0.3.20-1) ... 82s Setting up r-cran-xfun (0.48+dfsg-1) ... 82s Setting up r-cran-sys (3.4.2-1) ... 82s Setting up r-cran-plogr (0.2.0-3build1) ... 82s Setting up r-cran-withr (3.0.0+dfsg-1) ... 82s Setting up r-cran-processx (3.8.4-1) ... 82s Setting up r-cran-mime (0.12-2) ... 82s Setting up r-cran-praise (1.0.0-4build1) ... 82s Setting up r-cran-base64enc (0.1-3-3) ... 82s Setting up r-cran-iterators (1.0.14-1) ... 82s Setting up r-cran-digest (0.6.36-1) ... 82s Setting up r-cran-yaml (2.3.8-2) ... 82s Setting up r-cran-evaluate (0.24.0-1) ... 82s Setting up r-cran-dbi (1.2.3-1) ... 82s Setting up r-cran-highr (0.11+dfsg-1) ... 82s Setting up r-cran-foreach (1.5.2-1) ... 82s Setting up r-cran-fansi (1.0.5-1) ... 82s Setting up r-cran-glue (1.7.0-1) ... 82s Setting up r-cran-bit (4.0.5-1) ... 82s Setting up gfortran-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 82s Setting up r-cran-xtable (1:1.8-4-2) ... 82s Setting up r-cran-cli (3.6.2-1) ... 82s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 82s Setting up r-cran-rprojroot (2.0.4-1) ... 82s Setting up r-cran-bit64 (4.0.5-1) ... 82s Setting up gcc (4:14.1.0-2ubuntu1) ... 82s Setting up r-bioc-zlibbioc (1.50.0+dfsg-2) ... 82s Setting up r-cran-askpass (1.2.0-1) ... 82s Setting up r-cran-fastmap (1.1.1-1) ... 82s Setting up r-cran-png (0.1-8-1build2) ... 82s Setting up r-cran-r.methodss3 (1.8.2-1) ... 82s Setting up r-bioc-biobase (2.64.0-4) ... 82s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 82s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 82s Setting up r-cran-utf8 (1.2.4-1) ... 82s Setting up r-cran-cpp11 (0.4.7-1) ... 82s Setting up r-bioc-s4vectors (0.42.1+dfsg-2) ... 82s Setting up r-cran-later (1.3.2+dfsg-1) ... 82s Setting up r-cran-doparallel (1.0.17-1) ... 82s Setting up r-cran-htmltools (0.5.8.1-1) ... 82s Setting up r-cran-tinytex (0.51-1) ... 82s Setting up r-cran-knitr (1.47+dfsg-1) ... 82s Setting up g++ (4:14.1.0-2ubuntu1) ... 82s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 82s Setting up r-cran-cachem (1.0.8-1) ... 82s Setting up r-cran-sass (0.4.9+dfsg-1) ... 82s Setting up build-essential (12.10ubuntu1) ... 82s Setting up r-bioc-iranges (2.38.1-1) ... 82s Setting up r-cran-rjson (0.2.21-1) ... 82s Setting up r-cran-vctrs (0.6.5-1) ... 82s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 82s Setting up r-cran-openssl (2.2.0+dfsg-1) ... 82s Setting up r-cran-callr (3.7.6-1) ... 82s Setting up r-cran-desc (1.4.3-1) ... 82s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 82s Setting up r-cran-fontawesome (0.5.2-1) ... 82s Setting up r-cran-r.oo (1.26.0-1) ... 82s Setting up gfortran (4:14.1.0-2ubuntu1) ... 82s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 82s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 82s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 82s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 82s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 82s Setting up r-cran-httr2 (1.0.5-1) ... 82s Setting up r-cran-httr (1.4.7+dfsg-1) ... 82s Setting up r-cran-memoise (2.0.1-1) ... 82s Setting up r-cran-promises (1.3.0+dfsg-1) ... 82s Setting up r-cran-blob (1.2.4-1) ... 82s Setting up r-bioc-xvector (0.44.0-1) ... 82s Setting up r-cran-pkgbuild (1.4.4-1) ... 82s Setting up r-cran-rsqlite (2.3.7-2) ... 82s Setting up r-cran-pkgload (1.4.0-1) ... 82s Setting up r-cran-r.utils (2.12.3-1) ... 82s Setting up r-base-dev (4.4.1-1) ... 82s Setting up r-bioc-ucsc.utils (1.0.0+ds-2) ... 82s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 82s Setting up r-cran-rematch2 (2.1.2-2build1) ... 82s Setting up r-cran-yulab.utils (0.1.4-1) ... 82s Setting up r-bioc-genomeinfodb (1.40.1+dfsg-1) ... 82s Setting up r-cran-bslib (0.7.0+dfsg-1) ... 82s Setting up r-cran-waldo (0.5.2-1build1) ... 82s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 82s Setting up r-bioc-biostrings (2.72.1+dfsg-1) ... 82s Setting up r-cran-shiny (1.8.1.1+dfsg-1) ... 82s Setting up r-cran-testthat (3.2.1.1-1) ... 82s Setting up r-cran-rmarkdown (2.27+dfsg-1) ... 82s Setting up r-bioc-pwalign (1.0.0-2) ... 82s Setting up r-bioc-keggrest (1.44.1+dfsg-1) ... 82s Setting up r-bioc-annotationdbi (1.66.0-1) ... 82s Setting up r-bioc-go.db (3.19.1-1) ... 82s Setting up r-bioc-gosemsim (2.30.2-1) ... 82s Setting up r-bioc-rcpi (1.40.2+ds-1) ... 82s Setting up autopkgtest-satdep (0) ... 82s Processing triggers for man-db (2.12.1-3) ... 84s Processing triggers for install-info (7.1.1-1) ... 84s Processing triggers for libc-bin (2.40-1ubuntu3) ... 91s (Reading database ... 95541 files and directories currently installed.) 91s Removing autopkgtest-satdep (0) ... 91s autopkgtest [00:07:19]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 91s autopkgtest [00:07:19]: test pkg-r-autopkgtest: [----------------------- 91s Test: Try to load the R library Rcpi 91s 91s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 91s Copyright (C) 2024 The R Foundation for Statistical Computing 91s Platform: x86_64-pc-linux-gnu 91s 91s R is free software and comes with ABSOLUTELY NO WARRANTY. 91s You are welcome to redistribute it under certain conditions. 91s Type 'license()' or 'licence()' for distribution details. 91s 91s R is a collaborative project with many contributors. 91s Type 'contributors()' for more information and 91s 'citation()' on how to cite R or R packages in publications. 91s 91s Type 'demo()' for some demos, 'help()' for on-line help, or 91s 'help.start()' for an HTML browser interface to help. 91s Type 'q()' to quit R. 91s 91s > library('Rcpi') 94s 95s > 95s > 95s Other tests are currently unsupported! 95s They will be progressively added. 95s autopkgtest [00:07:23]: test pkg-r-autopkgtest: -----------------------] 95s autopkgtest [00:07:23]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 95s pkg-r-autopkgtest PASS 95s autopkgtest [00:07:23]: @@@@@@@@@@@@@@@@@@@@ summary 95s pkg-r-autopkgtest PASS 106s nova [W] Skipping flock for amd64 106s Creating nova instance adt-plucky-amd64-r-bioc-rcpi-20241104-000548-juju-7f2275-prod-proposed-migration-environment-14-20fc46e0-32d9-42a8-a1a0-0b63c937b620 from image adt/ubuntu-plucky-amd64-server-20241103.img (UUID 35ab818c-a1b8-49b0-b1ec-61e6c5b42b5f)...