0s autopkgtest [18:19:17]: starting date and time: 2025-03-15 18:19:17+0000 0s autopkgtest [18:19:17]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [18:19:17]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.gsilbry1/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-rbgl --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@lcy02-10.secgroup --name adt-plucky-amd64-r-bioc-rbgl-20250315-181916-juju-7f2275-prod-proposed-migration-environment-15-0ebe6b40-8584-45bb-9355-633814c7c127 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 45s autopkgtest [18:20:02]: testbed dpkg architecture: amd64 45s autopkgtest [18:20:02]: testbed apt version: 2.9.31ubuntu1 45s autopkgtest [18:20:02]: @@@@@@@@@@@@@@@@@@@@ test bed setup 45s autopkgtest [18:20:02]: testbed release detected to be: None 45s autopkgtest [18:20:02]: updating testbed package index (apt update) 46s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 46s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 46s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 46s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 46s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 46s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 46s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 46s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [97.6 kB] 46s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [123 kB] 46s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1884 B] 46s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 46s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [167 kB] 46s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [335 kB] 46s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [16.0 kB] 46s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8452 B] 46s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [17.0 kB] 46s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 46s Fetched 1387 kB in 0s (4733 kB/s) 47s Reading package lists... 47s + lsb_release --codename --short 47s + RELEASE=plucky 47s + cat 47s + [ plucky != trusty ] 47s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 47s Reading package lists... 48s Building dependency tree... 48s Reading state information... 48s Calculating upgrade... 48s Calculating upgrade... 49s The following package was automatically installed and is no longer required: 49s libnl-genl-3-200 49s Use 'sudo apt autoremove' to remove it. 49s The following NEW packages will be installed: 49s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 49s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 49s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 49s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 49s The following packages will be upgraded: 49s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 49s cloud-init cloud-init-base curl dosfstools fwupd gir1.2-girepository-2.0 49s gir1.2-glib-2.0 htop hwdata libapparmor1 libapt-pkg7.0 libaudit-common 49s libaudit1 libbinutils libbrotli1 libcap-ng0 libctf-nobfd0 libctf0 49s libcurl3t64-gnutls libcurl4t64 libestr0 libfwupd3 libgirepository-1.0-1 49s libglib2.0-0t64 libglib2.0-data libgprofng0 libjemalloc2 liblz4-1 liblzma5 49s libmm-glib0 libncurses6 libncursesw6 libnl-3-200 libnl-genl-3-200 49s libnl-route-3-200 libpci3 libpython3-stdlib libpython3.13 49s libpython3.13-minimal libpython3.13-stdlib libselinux1 libsframe1 49s libsqlite3-0 libtinfo6 libxml2 linux-firmware linux-generic 49s linux-headers-generic linux-headers-virtual linux-image-generic 49s linux-image-virtual linux-libc-dev linux-tools-common linux-virtual 49s media-types ncurses-base ncurses-bin ncurses-term pci.ids pciutils 49s pinentry-curses python-apt-common python3 python3-apt python3-cffi-backend 49s python3-dbus python3-gi python3-jinja2 python3-lazr.uri python3-markupsafe 49s python3-minimal python3-systemd python3-yaml python3.13 python3.13-gdbm 49s python3.13-minimal rsync rsyslog strace xz-utils 49s 86 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 49s Need to get 807 MB of archives. 49s After this operation, 326 MB of additional disk space will be used. 49s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 49s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 49s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 49s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 49s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 49s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 49s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 49s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 49s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 49s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 49s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 49s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 49s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 49s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 49s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 49s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 49s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 49s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 50s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 50s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 50s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 50s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 50s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 50s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 50s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 50s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 50s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 50s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 50s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 50s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 50s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 50s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 50s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 50s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 50s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 50s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 50s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 50s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 50s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 50s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 50s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 50s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 50s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 50s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 50s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 50s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 50s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 50s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 50s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 50s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 50s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 50s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 50s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 50s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 50s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 50s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 50s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 50s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 50s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 50s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 50s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 50s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 50s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 50s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 50s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 50s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 51s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 51s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 51s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 51s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 51s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 51s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 51s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 51s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 51s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 51s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 51s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 51s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 69s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 69s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 70s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 72s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 72s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 72s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 72s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 72s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 72s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 72s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 72s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 72s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 72s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 72s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 72s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 72s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 72s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 72s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 72s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 72s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 72s Preconfiguring packages ... 72s Fetched 807 MB in 23s (35.5 MB/s) 72s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 72s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ... 72s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ... 72s Setting up ncurses-bin (6.5+20250216-2) ... 72s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 72s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... 72s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ... 72s Setting up ncurses-base (6.5+20250216-2) ... 72s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 72s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ... 72s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ... 73s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ... 73s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ... 73s Setting up liblz4-1:amd64 (1.10.0-4) ... 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 73s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ... 73s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ... 73s Setting up liblzma5:amd64 (5.6.4-1) ... 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 73s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 73s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 73s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 73s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 73s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 74s Setting up apt (2.9.33) ... 74s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 74s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 74s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 74s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 74s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 74s Setting up python3-minimal (3.13.2-2) ... 75s (Reading database ... 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Preparing to unpack .../68-python3-systemd_235-1build6_amd64.deb ... 91s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 91s Preparing to unpack .../69-python3.13-gdbm_3.13.2-2_amd64.deb ... 91s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 91s Preparing to unpack .../70-cloud-init_25.1-0ubuntu3_all.deb ... 91s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 91s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 91s Setting up media-types (13.0.0) ... 91s Installing new version of config file /etc/mime.types ... 91s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 91s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 91s Setting up pci.ids (0.0~2025.03.09-1) ... 91s Setting up apt-utils (2.9.33) ... 91s Setting up libdebuginfod-common (0.192-4) ... 91s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 91s Setting up bpftool (7.6.0+6.14.0-10.10) ... 91s Setting up libestr0:amd64 (0.1.11-2) ... 91s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 91s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 91s Setting up dosfstools (4.2-1.2) ... 91s Setting up rsyslog (8.2412.0-2ubuntu2) ... 91s info: The user `syslog' is already a member of `adm'. 92s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 92s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 92s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 92s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 92s Setting up linux-headers-generic (6.14.0-10.10) ... 92s Setting up libjemalloc2:amd64 (5.3.0-3) ... 92s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 92s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 92s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 92s Installing new version of config file /etc/apparmor.d/openvpn ... 93s Reloading AppArmor profiles 96s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 96s No schema files found: doing nothing. 96s Setting up libglib2.0-data (2.84.0-1) ... 96s Setting up libncurses6:amd64 (6.5+20250216-2) ... 96s Setting up strace (6.13+ds-1ubuntu1) ... 96s Setting up xz-utils (5.6.4-1) ... 96s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 96s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 98s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 98s Setting up libpci3:amd64 (1:3.13.0-2) ... 98s Setting up python-apt-common (2.9.9build1) ... 98s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 98s Setting up pnp.ids (0.393-3) ... 98s Setting up libnl-3-200:amd64 (3.7.0-1) ... 98s Setting up python3.13-minimal (3.13.2-2) ... 99s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 99s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 99s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 99s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 99s Setting up rsync (3.4.1+ds1-3) ... 99s rsync.service is a disabled or a static unit not running, not starting it. 99s Setting up python3.13-gdbm (3.13.2-2) ... 99s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 99s Setting up ncurses-term (6.5+20250216-2) ... 99s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 99s Setting up libpython3.13:amd64 (3.13.2-2) ... 99s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 99s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 99s Setting up linux-headers-virtual (6.14.0-10.10) ... 99s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 99s Setting up python3.13 (3.13.2-2) ... 100s Setting up htop (3.4.0-2) ... 100s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 102s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 102s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 102s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 102s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 102s Setting up libfwupd3:amd64 (2.0.6-4) ... 102s Setting up python3 (3.13.2-2) ... 103s Setting up python3-markupsafe (2.1.5-1build4) ... 103s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 105s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 105s Setting up hwdata (0.393-3) ... 105s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 105s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 105s Setting up linux-perf (6.14.0-10.10) ... 105s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 105s Setting up python3-gi (3.50.0-4build1) ... 105s Setting up pciutils (1:3.13.0-2) ... 105s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 105s Setting up curl (8.12.1-3ubuntu1) ... 105s Setting up linux-image-virtual (6.14.0-10.10) ... 105s Setting up linux-tools-common (6.14.0-10.10) ... 105s Setting up fwupd (2.0.6-4) ... 106s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 106s Setting up python3-systemd (235-1build6) ... 107s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 107s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 107s Setting up linux-image-generic (6.14.0-10.10) ... 107s Setting up python3-dbus (1.3.2-5build5) ... 107s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 107s Setting up linux-generic (6.14.0-10.10) ... 107s Setting up python3-apt (2.9.9build1) ... 107s Setting up python3-yaml (6.0.2-1build2) ... 107s Setting up python3-lazr.uri (1.0.6-6) ... 107s Setting up binutils (2.44-3ubuntu1) ... 107s Setting up cloud-init-base (25.1-0ubuntu3) ... 109s Setting up linux-virtual (6.14.0-10.10) ... 109s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 109s Setting up cloud-init (25.1-0ubuntu3) ... 109s Processing triggers for systemd (257.3-1ubuntu3) ... 109s Processing triggers for man-db (2.13.0-1) ... 110s Processing triggers for dbus (1.16.2-1ubuntu1) ... 110s Processing triggers for libc-bin (2.41-1ubuntu1) ... 110s Processing triggers for initramfs-tools (0.146ubuntu1) ... 110s update-initramfs: Generating /boot/initrd.img-6.12.0-16-generic 110s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 121s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 121s /etc/kernel/postinst.d/initramfs-tools: 121s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 121s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 132s /etc/kernel/postinst.d/zz-update-grub: 132s Sourcing file `/etc/default/grub' 132s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 132s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 132s Generating grub configuration file ... 132s Found linux image: /boot/vmlinuz-6.14.0-10-generic 132s Found initrd image: /boot/initrd.img-6.14.0-10-generic 132s Found linux image: /boot/vmlinuz-6.12.0-16-generic 132s Found initrd image: /boot/initrd.img-6.12.0-16-generic 132s Found linux image: /boot/vmlinuz-6.11.0-8-generic 132s Found initrd image: /boot/initrd.img-6.11.0-8-generic 132s Warning: os-prober will not be executed to detect other bootable partitions. 132s Systems on them will not be added to the GRUB boot configuration. 132s Check GRUB_DISABLE_OS_PROBER documentation entry. 132s Adding boot menu entry for UEFI Firmware Settings ... 132s done 133s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 133s + /usr/lib/apt/apt-helper analyze-pattern ?true 133s + uname -r 133s + sed s/\./\\./g 133s + running_kernel_pattern=^linux-.*6\.12\.0-16-generic.* 133s + apt list ?obsolete 133s + tail -n+2 133s + grep -v ^linux-.*6\.12\.0-16-generic.* 133s + cut -d/ -f1 134s + obsolete_pkgs=linux-headers-6.11.0-8-generic 134s linux-headers-6.11.0-8 134s linux-headers-6.12.0-16 134s linux-image-6.11.0-8-generic 134s linux-modules-6.11.0-8-generic 134s linux-tools-6.11.0-8-generic 134s linux-tools-6.11.0-8 134s linux-tools-6.12.0-16 134s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-headers-6.12.0-16 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 linux-tools-6.12.0-16 134s Reading package lists... 134s Building dependency tree... 134s Reading state information... 135s Solving dependencies... 135s The following packages will be REMOVED: 135s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 135s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 135s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 135s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 135s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 135s linux-tools-6.12.0-16-generic* 135s 0 upgraded, 0 newly installed, 15 to remove and 5 not upgraded. 135s After this operation, 371 MB disk space will be freed. 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 135s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 135s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 135s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 135s Removing libpython3.12t64:amd64 (3.12.9-1) ... 135s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 135s Removing libnsl2:amd64 (1.3.0-3build3) ... 135s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 135s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 136s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 138s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 139s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 141s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 141s /etc/kernel/postrm.d/initramfs-tools: 141s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 141s /etc/kernel/postrm.d/zz-update-grub: 141s Sourcing file `/etc/default/grub' 141s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 141s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 141s Generating grub configuration file ... 141s Found linux image: /boot/vmlinuz-6.14.0-10-generic 141s Found initrd image: /boot/initrd.img-6.14.0-10-generic 142s Found linux image: /boot/vmlinuz-6.12.0-16-generic 142s Found initrd image: /boot/initrd.img-6.12.0-16-generic 142s Warning: os-prober will not be executed to detect other bootable partitions. 142s Systems on them will not be added to the GRUB boot configuration. 142s Check GRUB_DISABLE_OS_PROBER documentation entry. 142s Adding boot menu entry for UEFI Firmware Settings ... 142s done 142s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 142s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 142s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 142s Processing triggers for libc-bin (2.41-1ubuntu1) ... 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84830 files and directories currently installed.) 142s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 142s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 142s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 142s + grep -q trusty /etc/lsb-release 142s + [ ! -d /usr/share/doc/unattended-upgrades ] 142s + [ ! -d /usr/share/doc/lxd ] 142s + [ ! -d /usr/share/doc/lxd-client ] 142s + [ ! -d /usr/share/doc/snapd ] 142s + type iptables 142s + cat 142s + chmod 755 /etc/rc.local 142s + . /etc/rc.local 142s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 142s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 142s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 142s + uname -m 142s + [ x86_64 = ppc64le ] 142s + [ -d /run/systemd/system ] 142s + systemd-detect-virt --quiet --vm 142s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 142s + cat 142s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 142s + echo COMPRESS=lz4 142s autopkgtest [18:21:39]: upgrading testbed (apt dist-upgrade and autopurge) 143s Reading package lists... 143s Building dependency tree... 143s Reading state information... 143s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 143s Starting 2 pkgProblemResolver with broken count: 0 143s Done 144s Entering ResolveByKeep 144s 144s Calculating upgrade... 145s The following packages will be upgraded: 145s libc-bin libc-dev-bin libc6 libc6-dev locales 145s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 145s Need to get 10.5 MB of archives. 145s After this operation, 1024 B of additional disk space will be used. 145s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 145s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 145s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 145s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 145s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 146s Preconfiguring packages ... 146s Fetched 10.5 MB in 1s (11.9 MB/s) 146s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 146s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 146s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 146s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 146s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 146s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 146s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 147s Setting up libc6:amd64 (2.41-1ubuntu2) ... 147s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 147s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 147s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 147s Setting up libc-bin (2.41-1ubuntu2) ... 147s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 147s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 147s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 147s Setting up locales (2.41-1ubuntu2) ... 148s Generating locales (this might take a while)... 149s en_US.UTF-8... done 149s Generation complete. 149s Setting up libc-dev-bin (2.41-1ubuntu2) ... 149s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 149s Processing triggers for man-db (2.13.0-1) ... 150s Processing triggers for systemd (257.3-1ubuntu3) ... 151s Reading package lists... 152s Building dependency tree... 152s Reading state information... 152s Starting pkgProblemResolver with broken count: 0 152s Starting 2 pkgProblemResolver with broken count: 0 152s Done 152s Solving dependencies... 152s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 152s autopkgtest [18:21:49]: rebooting testbed after setup commands that affected boot 156s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 167s autopkgtest [18:22:04]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 168s autopkgtest [18:22:05]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rbgl 169s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rbgl 1.82.0+dfsg-2 (dsc) [2124 B] 169s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rbgl 1.82.0+dfsg-2 (tar) [126 kB] 169s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rbgl 1.82.0+dfsg-2 (diff) [7496 B] 169s gpgv: Signature made Sun Jan 12 02:56:58 2025 UTC 169s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 169s gpgv: issuer "crusoe@debian.org" 169s gpgv: Can't check signature: No public key 169s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rbgl_1.82.0+dfsg-2.dsc: no acceptable signature found 170s autopkgtest [18:22:07]: testing package r-bioc-rbgl version 1.82.0+dfsg-2 170s autopkgtest [18:22:07]: build not needed 172s autopkgtest [18:22:09]: test pkg-r-autopkgtest: preparing testbed 172s Reading package lists... 172s Building dependency tree... 172s Reading state information... 173s Starting pkgProblemResolver with broken count: 0 173s Starting 2 pkgProblemResolver with broken count: 0 173s Done 174s The following NEW packages will be installed: 174s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 174s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 174s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 174s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 174s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 174s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 174s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 174s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 174s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 174s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 174s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 174s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 174s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 174s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 174s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 174s libjs-popper.js libjs-prettify libjs-sifter.js 174s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 174s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 174s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 174s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 174s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 174s libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev 174s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 174s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 174s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 174s libxss1 libxt6t64 libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv 174s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 174s r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocstyle 174s r-bioc-biocversion r-bioc-graph r-bioc-rbgl r-cran-base64enc r-cran-bh 174s r-cran-biocmanager r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 174s r-cran-commonmark r-cran-crayon r-cran-digest r-cran-evaluate r-cran-fastmap 174s r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools 174s r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later 174s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise r-cran-mime 174s r-cran-pkgkitten r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcpp 174s r-cran-rlang r-cran-rmarkdown r-cran-runit r-cran-sass r-cran-shiny 174s r-cran-sourcetools r-cran-tinytex r-cran-withr r-cran-xfun r-cran-xml 174s r-cran-xtable r-cran-yaml t1utils tex-common texlive-base 174s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 174s xdg-utils zip zlib1g-dev 174s 0 upgraded, 201 newly installed, 0 to remove and 0 not upgraded. 174s Need to get 342 MB of archives. 174s After this operation, 1211 MB of additional disk space will be used. 174s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 174s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 174s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 174s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 174s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 174s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 174s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 174s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 174s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 174s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 174s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 174s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 174s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 174s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 175s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 175s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 175s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 175s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 175s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 175s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 175s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 175s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 175s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 175s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 175s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 175s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 175s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 175s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 175s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 175s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 175s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 175s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 175s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 175s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 175s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 176s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 176s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 176s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 176s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 176s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 176s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 176s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 176s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 176s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 176s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 176s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 176s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 176s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 176s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 176s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB] 176s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 176s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 176s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 176s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 176s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 176s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 176s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 176s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 176s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 176s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 176s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 176s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 176s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 176s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 176s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 176s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 176s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 176s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 176s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 176s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 176s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 176s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 176s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 176s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 176s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 176s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 176s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 177s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 177s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 177s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 177s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 177s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 177s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 177s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 177s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 177s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-5build2 [67.0 kB] 177s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 177s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 177s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 177s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 177s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 177s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 177s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 177s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 177s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 177s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 177s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 177s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 177s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 177s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 177s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 177s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 177s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 177s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 177s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 177s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 178s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 178s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-5build2 [43.7 kB] 178s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 178s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 178s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 178s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-5build2 [62.5 kB] 178s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 178s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 178s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-5build2 [145 kB] 178s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 178s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 178s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 178s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 178s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 178s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 178s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 178s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 178s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 178s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 178s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 178s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 178s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 178s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 178s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 178s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 179s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 179s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 179s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 179s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 179s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 179s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 179s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 180s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 180s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 180s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 180s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 180s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 180s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 180s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 180s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 180s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 180s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 180s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 180s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 180s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 180s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 180s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 180s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 180s Get:155 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 180s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 180s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 180s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 180s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 180s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 180s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 180s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 180s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 180s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 180s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 180s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 180s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 180s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 180s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 180s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 180s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 180s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 180s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 180s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 180s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 180s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 180s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 180s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 180s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 180s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 180s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 180s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 180s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 180s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 180s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 180s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 180s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 180s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 180s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB] 180s Get:190 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 180s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-5build2 [9799 kB] 180s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB] 181s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB] 181s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 182s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 182s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 182s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-graph amd64 1.84.1-1 [1298 kB] 182s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 182s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rbgl amd64 1.82.0+dfsg-2 [588 kB] 182s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 182s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 183s Preconfiguring packages ... 183s Fetched 342 MB in 8s (40.4 MB/s) 183s Selecting previously unselected package libisl23:amd64. 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 183s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 183s Unpacking libisl23:amd64 (0.27-1) ... 183s Selecting previously unselected package libmpc3:amd64. 183s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 183s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 183s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 183s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 183s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 183s Selecting previously unselected package cpp-14. 183s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 183s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 183s Selecting previously unselected package cpp-x86-64-linux-gnu. 183s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 183s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 183s Selecting previously unselected package cpp. 183s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 183s Unpacking cpp (4:14.2.0-1ubuntu1) ... 183s Selecting previously unselected package libcc1-0:amd64. 183s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 183s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 183s Selecting previously unselected package libgomp1:amd64. 183s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 183s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 183s Selecting previously unselected package libitm1:amd64. 183s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 183s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 183s Selecting previously unselected package libasan8:amd64. 183s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 183s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 183s Selecting previously unselected package liblsan0:amd64. 183s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 183s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 183s Selecting previously unselected package libtsan2:amd64. 183s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 183s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 184s Selecting previously unselected package libubsan1:amd64. 184s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 184s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 184s Selecting previously unselected package libhwasan0:amd64. 184s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 184s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 184s Selecting previously unselected package libquadmath0:amd64. 184s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 184s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 184s Selecting previously unselected package libgcc-14-dev:amd64. 184s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 184s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 184s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 184s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 184s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 184s Selecting previously unselected package gcc-14. 184s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 184s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 184s Selecting previously unselected package gcc-x86-64-linux-gnu. 184s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 184s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 184s Selecting previously unselected package gcc. 184s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 184s Unpacking gcc (4:14.2.0-1ubuntu1) ... 184s Selecting previously unselected package libstdc++-14-dev:amd64. 184s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 184s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 184s Selecting previously unselected package g++-14-x86-64-linux-gnu. 185s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 185s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 185s Selecting previously unselected package g++-14. 185s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ... 185s Unpacking g++-14 (14.2.0-17ubuntu3) ... 185s Selecting previously unselected package g++-x86-64-linux-gnu. 185s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 185s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 185s Selecting previously unselected package g++. 185s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 185s Unpacking g++ (4:14.2.0-1ubuntu1) ... 185s Selecting previously unselected package build-essential. 185s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 185s Unpacking build-essential (12.10ubuntu1) ... 185s Selecting previously unselected package dctrl-tools. 185s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 185s Unpacking dctrl-tools (2.24-3build3) ... 185s Selecting previously unselected package fonts-dejavu-mono. 185s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 185s Unpacking fonts-dejavu-mono (2.37-8) ... 185s Selecting previously unselected package fonts-dejavu-core. 185s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 185s Unpacking fonts-dejavu-core (2.37-8) ... 185s Selecting previously unselected package fontconfig-config. 185s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 185s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 185s Selecting previously unselected package libfontconfig1:amd64. 185s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 185s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 185s Selecting previously unselected package fontconfig. 185s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 185s Unpacking fontconfig (2.15.0-2ubuntu1) ... 185s Selecting previously unselected package fonts-font-awesome. 185s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 185s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 185s Selecting previously unselected package fonts-glyphicons-halflings. 185s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 185s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 185s Selecting previously unselected package fonts-lmodern. 185s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ... 185s Unpacking fonts-lmodern (2.005-1) ... 185s Selecting previously unselected package fonts-mathjax. 185s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 185s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 186s Selecting previously unselected package libgfortran5:amd64. 186s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 186s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 186s Selecting previously unselected package libgfortran-14-dev:amd64. 186s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 186s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 186s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 186s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 186s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 186s Selecting previously unselected package gfortran-14. 186s Preparing to unpack .../039-gfortran-14_14.2.0-17ubuntu3_amd64.deb ... 186s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 186s Selecting previously unselected package gfortran-x86-64-linux-gnu. 186s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 186s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 186s Selecting previously unselected package gfortran. 186s Preparing to unpack .../041-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 186s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 186s Selecting previously unselected package icu-devtools. 186s Preparing to unpack .../042-icu-devtools_76.1-1ubuntu2_amd64.deb ... 186s Unpacking icu-devtools (76.1-1ubuntu2) ... 186s Selecting previously unselected package javascript-common. 186s Preparing to unpack .../043-javascript-common_12_all.deb ... 186s Unpacking javascript-common (12) ... 186s Selecting previously unselected package libio-string-perl. 186s Preparing to unpack .../044-libio-string-perl_1.08-4_all.deb ... 186s Unpacking libio-string-perl (1.08-4) ... 186s Selecting previously unselected package liblatex-tounicode-perl. 186s Preparing to unpack .../045-liblatex-tounicode-perl_0.55-1_all.deb ... 186s Unpacking liblatex-tounicode-perl (0.55-1) ... 186s Selecting previously unselected package libbibtex-parser-perl. 186s Preparing to unpack .../046-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 186s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 186s Selecting previously unselected package libblas3:amd64. 186s Preparing to unpack .../047-libblas3_3.12.1-2_amd64.deb ... 186s Unpacking libblas3:amd64 (3.12.1-2) ... 186s Selecting previously unselected package libblas-dev:amd64. 186s Preparing to unpack .../048-libblas-dev_3.12.1-2_amd64.deb ... 186s Unpacking libblas-dev:amd64 (3.12.1-2) ... 186s Selecting previously unselected package libboost1.83-dev:amd64. 186s Preparing to unpack .../049-libboost1.83-dev_1.83.0-4.1ubuntu2_amd64.deb ... 186s Unpacking libboost1.83-dev:amd64 (1.83.0-4.1ubuntu2) ... 189s Selecting previously unselected package libboost-dev:amd64. 189s Preparing to unpack .../050-libboost-dev_1.83.0.2ubuntu1_amd64.deb ... 189s Unpacking libboost-dev:amd64 (1.83.0.2ubuntu1) ... 189s Selecting previously unselected package libbz2-dev:amd64. 189s Preparing to unpack .../051-libbz2-dev_1.0.8-6_amd64.deb ... 189s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 189s Selecting previously unselected package libpixman-1-0:amd64. 189s Preparing to unpack .../052-libpixman-1-0_0.44.0-3_amd64.deb ... 189s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 189s Selecting previously unselected package libxcb-render0:amd64. 189s Preparing to unpack .../053-libxcb-render0_1.17.0-2_amd64.deb ... 189s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 189s Selecting previously unselected package libxcb-shm0:amd64. 189s Preparing to unpack .../054-libxcb-shm0_1.17.0-2_amd64.deb ... 189s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 189s Selecting previously unselected package libxrender1:amd64. 189s Preparing to unpack .../055-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 189s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 189s Selecting previously unselected package libcairo2:amd64. 189s Preparing to unpack .../056-libcairo2_1.18.2-2_amd64.deb ... 189s Unpacking libcairo2:amd64 (1.18.2-2) ... 189s Selecting previously unselected package libdatrie1:amd64. 189s Preparing to unpack .../057-libdatrie1_0.2.13-3build1_amd64.deb ... 189s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 189s Selecting previously unselected package libdeflate0:amd64. 189s Preparing to unpack .../058-libdeflate0_1.23-1_amd64.deb ... 189s Unpacking libdeflate0:amd64 (1.23-1) ... 189s Selecting previously unselected package libdeflate-dev:amd64. 189s Preparing to unpack .../059-libdeflate-dev_1.23-1_amd64.deb ... 189s Unpacking libdeflate-dev:amd64 (1.23-1) ... 189s Selecting previously unselected package libgraphite2-3:amd64. 189s Preparing to unpack .../060-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 189s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 189s Selecting previously unselected package libharfbuzz0b:amd64. 189s Preparing to unpack .../061-libharfbuzz0b_10.2.0-1_amd64.deb ... 189s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 189s Selecting previously unselected package x11-common. 189s Preparing to unpack .../062-x11-common_1%3a7.7+23ubuntu3_all.deb ... 189s Unpacking x11-common (1:7.7+23ubuntu3) ... 189s Selecting previously unselected package libice6:amd64. 189s Preparing to unpack .../063-libice6_2%3a1.1.1-1_amd64.deb ... 189s Unpacking libice6:amd64 (2:1.1.1-1) ... 189s Selecting previously unselected package libicu-dev:amd64. 189s Preparing to unpack .../064-libicu-dev_76.1-1ubuntu2_amd64.deb ... 189s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 189s Selecting previously unselected package libjpeg-turbo8:amd64. 189s Preparing to unpack .../065-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 189s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 189s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 189s Preparing to unpack .../066-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ... 189s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 189s Selecting previously unselected package libjpeg8:amd64. 189s Preparing to unpack .../067-libjpeg8_8c-2ubuntu11_amd64.deb ... 189s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 189s Selecting previously unselected package libjpeg8-dev:amd64. 189s Preparing to unpack .../068-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 189s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 189s Selecting previously unselected package libjpeg-dev:amd64. 189s 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previously unselected package libkpathsea6:amd64. 190s Preparing to unpack .../085-libkpathsea6_2024.20240313.70630+ds-5build2_amd64.deb ... 190s Unpacking libkpathsea6:amd64 (2024.20240313.70630+ds-5build2) ... 190s Selecting previously unselected package liblapack3:amd64. 190s Preparing to unpack .../086-liblapack3_3.12.1-2_amd64.deb ... 190s Unpacking liblapack3:amd64 (3.12.1-2) ... 190s Selecting previously unselected package liblapack-dev:amd64. 190s Preparing to unpack .../087-liblapack-dev_3.12.1-2_amd64.deb ... 190s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 190s Selecting previously unselected package liblerc4:amd64. 190s Preparing to unpack .../088-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 190s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 191s Selecting previously unselected package liblua5.4-0:amd64. 191s Preparing to unpack .../089-liblua5.4-0_5.4.7-1_amd64.deb ... 191s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 191s Selecting previously unselected package libmpfi0:amd64. 191s Preparing to unpack .../090-libmpfi0_1.5.4+ds-4_amd64.deb ... 191s Unpacking libmpfi0:amd64 (1.5.4+ds-4) ... 191s Selecting previously unselected package libncurses-dev:amd64. 191s Preparing to unpack .../091-libncurses-dev_6.5+20250216-2_amd64.deb ... 191s Unpacking libncurses-dev:amd64 (6.5+20250216-2) ... 191s Selecting previously unselected package libthai-data. 191s Preparing to unpack .../092-libthai-data_0.1.29-2build1_all.deb ... 191s Unpacking libthai-data (0.1.29-2build1) ... 191s Selecting previously unselected package libthai0:amd64. 191s Preparing to unpack .../093-libthai0_0.1.29-2build1_amd64.deb ... 191s Unpacking libthai0:amd64 (0.1.29-2build1) ... 191s Selecting previously unselected package libpango-1.0-0:amd64. 191s Preparing to unpack .../094-libpango-1.0-0_1.56.2-1_amd64.deb ... 191s Unpacking libpango-1.0-0:amd64 (1.56.2-1) ... 191s Selecting previously unselected package libpangoft2-1.0-0:amd64. 191s Preparing to unpack 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libpcre2-32-0:amd64 (10.45-1) ... 191s Selecting previously unselected package libpcre2-posix3:amd64. 191s Preparing to unpack .../101-libpcre2-posix3_10.45-1_amd64.deb ... 191s Unpacking libpcre2-posix3:amd64 (10.45-1) ... 191s Selecting previously unselected package libpcre2-dev:amd64. 191s Preparing to unpack .../102-libpcre2-dev_10.45-1_amd64.deb ... 191s Unpacking libpcre2-dev:amd64 (10.45-1) ... 191s Selecting previously unselected package libpkgconf3:amd64. 191s Preparing to unpack .../103-libpkgconf3_1.8.1-4_amd64.deb ... 191s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 191s Selecting previously unselected package zlib1g-dev:amd64. 191s Preparing to unpack .../104-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 191s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 191s Selecting previously unselected package libpng-dev:amd64. 191s Preparing to unpack .../105-libpng-dev_1.6.47-1_amd64.deb ... 191s Unpacking libpng-dev:amd64 (1.6.47-1) ... 191s Selecting previously unselected package libpotrace0:amd64. 191s Preparing to unpack .../106-libpotrace0_1.16-2build1_amd64.deb ... 191s Unpacking libpotrace0:amd64 (1.16-2build1) ... 191s Selecting previously unselected package libptexenc1:amd64. 191s Preparing to unpack .../107-libptexenc1_2024.20240313.70630+ds-5build2_amd64.deb ... 191s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-5build2) ... 191s Selecting previously unselected package libreadline-dev:amd64. 191s Preparing to unpack .../108-libreadline-dev_8.2-6_amd64.deb ... 191s Unpacking libreadline-dev:amd64 (8.2-6) ... 191s Selecting previously unselected package libsharpyuv0:amd64. 191s Preparing to unpack .../109-libsharpyuv0_1.5.0-0.1_amd64.deb ... 191s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 191s Selecting previously unselected package libsm6:amd64. 191s Preparing to unpack .../110-libsm6_2%3a1.2.4-1_amd64.deb ... 191s Unpacking libsm6:amd64 (2:1.2.4-1) ... 191s Selecting previously unselected package libsynctex2:amd64. 191s Preparing to unpack .../111-libsynctex2_2024.20240313.70630+ds-5build2_amd64.deb ... 191s Unpacking libsynctex2:amd64 (2024.20240313.70630+ds-5build2) ... 191s Selecting previously unselected package libtcl8.6:amd64. 191s Preparing to unpack .../112-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 191s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 191s Selecting previously unselected package libteckit0:amd64. 191s Preparing to unpack .../113-libteckit0_2.5.12+ds1-1_amd64.deb ... 191s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 191s Selecting previously unselected package libtexlua53-5:amd64. 191s Preparing to unpack .../114-libtexlua53-5_2024.20240313.70630+ds-5build2_amd64.deb ... 191s Unpacking libtexlua53-5:amd64 (2024.20240313.70630+ds-5build2) ... 192s Selecting previously unselected package libjbig0:amd64. 192s Preparing to unpack .../115-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 192s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 192s Selecting previously unselected package libwebp7:amd64. 192s Preparing to unpack .../116-libwebp7_1.5.0-0.1_amd64.deb ... 192s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 192s Selecting previously unselected package libtiff6:amd64. 192s Preparing to unpack .../117-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 192s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 192s Selecting previously unselected package libxft2:amd64. 192s Preparing to unpack .../118-libxft2_2.3.6-1build1_amd64.deb ... 192s Unpacking libxft2:amd64 (2.3.6-1build1) ... 192s Selecting previously unselected package libxss1:amd64. 192s Preparing to unpack .../119-libxss1_1%3a1.2.3-1build3_amd64.deb ... 192s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 192s Selecting previously unselected package libtk8.6:amd64. 192s Preparing to unpack .../120-libtk8.6_8.6.16-1_amd64.deb ... 192s Unpacking libtk8.6:amd64 (8.6.16-1) ... 192s Selecting previously unselected package libxt6t64:amd64. 192s Preparing to unpack .../121-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 192s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 192s Selecting previously unselected package libxmu6:amd64. 192s Preparing to unpack .../122-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 192s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 192s Selecting previously unselected package libxpm4:amd64. 192s Preparing to unpack .../123-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 192s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 192s Selecting previously unselected package libxaw7:amd64. 192s Preparing to unpack .../124-libxaw7_2%3a1.0.16-1_amd64.deb ... 192s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 192s Selecting previously unselected package libxi6:amd64. 192s Preparing to unpack .../125-libxi6_2%3a1.8.2-1_amd64.deb ... 192s Unpacking libxi6:amd64 (2:1.8.2-1) ... 192s Selecting previously unselected package libzzip-0-13t64:amd64. 192s Preparing to unpack .../126-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 192s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 192s Selecting previously unselected package zip. 192s Preparing to unpack .../127-zip_3.0-14ubuntu2_amd64.deb ... 192s Unpacking zip (3.0-14ubuntu2) ... 192s Selecting previously unselected package unzip. 192s Preparing to unpack .../128-unzip_6.0-28ubuntu6_amd64.deb ... 192s Unpacking unzip (6.0-28ubuntu6) ... 192s Selecting previously unselected package xdg-utils. 192s Preparing to unpack .../129-xdg-utils_1.2.1-2ubuntu1_all.deb ... 192s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 192s Selecting previously unselected package r-base-core. 192s Preparing to unpack .../130-r-base-core_4.4.3-1_amd64.deb ... 192s Unpacking r-base-core (4.4.3-1) ... 192s Selecting previously unselected package r-cran-littler. 192s Preparing to unpack .../131-r-cran-littler_0.3.20-2_amd64.deb ... 192s Unpacking r-cran-littler (0.3.20-2) ... 193s Selecting previously unselected package littler. 193s Preparing to unpack .../132-littler_0.3.20-2_all.deb ... 193s Unpacking littler (0.3.20-2) ... 193s Selecting previously 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.../138-liblzma-dev_5.6.4-1_amd64.deb ... 194s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 194s Selecting previously unselected package pkgconf-bin. 194s Preparing to unpack .../139-pkgconf-bin_1.8.1-4_amd64.deb ... 194s Unpacking pkgconf-bin (1.8.1-4) ... 194s Selecting previously unselected package pkgconf:amd64. 194s Preparing to unpack .../140-pkgconf_1.8.1-4_amd64.deb ... 194s Unpacking pkgconf:amd64 (1.8.1-4) ... 194s Selecting previously unselected package libtirpc-dev:amd64. 194s Preparing to unpack .../141-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 194s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 194s Selecting previously unselected package r-base-dev. 194s Preparing to unpack .../142-r-base-dev_4.4.3-1_all.deb ... 194s Unpacking r-base-dev (4.4.3-1) ... 194s Selecting previously unselected package pkg-r-autopkgtest. 194s Preparing to unpack .../143-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 194s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 194s Selecting previously unselected package r-bioc-biocgenerics. 194s Preparing to unpack .../144-r-bioc-biocgenerics_0.52.0-2_all.deb ... 194s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 194s Selecting previously unselected package r-cran-base64enc. 194s Preparing to unpack .../145-r-cran-base64enc_0.1-3-3_amd64.deb ... 194s Unpacking r-cran-base64enc (0.1-3-3) ... 194s Selecting previously unselected package r-cran-digest. 194s Preparing to unpack .../146-r-cran-digest_0.6.37-1_amd64.deb ... 194s Unpacking r-cran-digest (0.6.37-1) ... 194s Selecting previously unselected package r-cran-fastmap. 194s Preparing to unpack .../147-r-cran-fastmap_1.2.0-1_amd64.deb ... 194s Unpacking r-cran-fastmap (1.2.0-1) ... 194s Selecting previously unselected package r-cran-rlang. 194s Preparing to unpack .../148-r-cran-rlang_1.1.5-1_amd64.deb ... 194s Unpacking r-cran-rlang (1.1.5-1) ... 194s Selecting previously unselected package r-cran-htmltools. 194s Preparing to unpack .../149-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 194s Unpacking r-cran-htmltools (0.5.8.1-1) ... 194s Selecting previously unselected package r-cran-evaluate. 194s Preparing to unpack .../150-r-cran-evaluate_1.0.3-1_all.deb ... 194s Unpacking r-cran-evaluate (1.0.3-1) ... 194s Selecting previously unselected package r-cran-xfun. 194s Preparing to unpack .../151-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 194s Unpacking r-cran-xfun (0.51+dfsg-1) ... 194s Selecting previously unselected package r-cran-highr. 194s Preparing to unpack .../152-r-cran-highr_0.11+dfsg-1_all.deb ... 194s Unpacking r-cran-highr (0.11+dfsg-1) ... 194s Selecting previously unselected package r-cran-yaml. 194s Preparing to unpack .../153-r-cran-yaml_2.3.10-1_amd64.deb ... 194s Unpacking r-cran-yaml (2.3.10-1) ... 194s Selecting previously unselected package libjs-mathjax. 194s Preparing to unpack .../154-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 194s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 195s Selecting previously unselected package r-cran-knitr. 195s Preparing to unpack .../155-r-cran-knitr_1.49+dfsg-1_all.deb ... 195s Unpacking r-cran-knitr (1.49+dfsg-1) ... 195s Selecting previously unselected package r-cran-cachem. 195s Preparing to unpack .../156-r-cran-cachem_1.1.0-1_amd64.deb ... 195s Unpacking r-cran-cachem (1.1.0-1) ... 195s Selecting previously unselected package r-cran-jquerylib. 195s Preparing to unpack .../157-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 195s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 195s Selecting previously unselected package r-cran-jsonlite. 195s Preparing to unpack .../158-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 195s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 195s Selecting previously unselected package r-cran-cli. 195s Preparing to unpack .../159-r-cran-cli_3.6.4-1_amd64.deb ... 195s Unpacking r-cran-cli (3.6.4-1) ... 195s Selecting previously unselected package r-cran-glue. 195s Preparing to unpack .../160-r-cran-glue_1.8.0-1_amd64.deb ... 195s Unpacking r-cran-glue (1.8.0-1) ... 195s Selecting previously unselected package r-cran-lifecycle. 195s Preparing to unpack .../161-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 195s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 195s Selecting previously unselected package r-cran-memoise. 195s Preparing to unpack .../162-r-cran-memoise_2.0.1-1_all.deb ... 195s Unpacking r-cran-memoise (2.0.1-1) ... 195s Selecting previously unselected package r-cran-mime. 195s Preparing to unpack .../163-r-cran-mime_0.12-2_amd64.deb ... 195s Unpacking r-cran-mime (0.12-2) ... 195s Selecting previously unselected package r-cran-fs. 195s Preparing to unpack .../164-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 195s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 196s Selecting previously unselected package r-cran-r6. 196s Preparing to unpack .../165-r-cran-r6_2.6.1-1_all.deb ... 196s Unpacking r-cran-r6 (2.6.1-1) ... 196s Selecting previously unselected package r-cran-rappdirs. 196s Preparing to unpack .../166-r-cran-rappdirs_0.3.3-1_amd64.deb ... 196s Unpacking 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199s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 201s Selecting previously unselected package r-bioc-biocversion. 201s Preparing to unpack .../194-r-bioc-biocversion_3.20.0-2_all.deb ... 201s Unpacking r-bioc-biocversion (3.20.0-2) ... 201s Selecting previously unselected package r-bioc-biocstyle. 201s Preparing to unpack .../195-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 201s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 201s Selecting previously unselected package r-bioc-graph. 201s Preparing to unpack .../196-r-bioc-graph_1.84.1-1_amd64.deb ... 201s Unpacking r-bioc-graph (1.84.1-1) ... 201s Selecting previously unselected package r-cran-bh. 201s Preparing to unpack .../197-r-cran-bh_1.84.0-1_all.deb ... 201s Unpacking r-cran-bh (1.84.0-1) ... 201s Selecting previously unselected package r-bioc-rbgl. 201s Preparing to unpack .../198-r-bioc-rbgl_1.82.0+dfsg-2_amd64.deb ... 201s Unpacking r-bioc-rbgl (1.82.0+dfsg-2) ... 201s Selecting previously unselected package 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Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 205s Setting up r-cran-commonmark (1.9.2-2) ... 205s Setting up g++-14 (14.2.0-17ubuntu3) ... 205s Setting up r-cran-r6 (2.6.1-1) ... 205s Setting up r-cran-pkgkitten (0.2.4-1) ... 205s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 205s Setting up texlive-base (2024.20250114-1) ... 205s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 205s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 206s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 206s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 206s Setting up r-cran-magrittr (2.0.3-1) ... 206s Setting up r-cran-rappdirs (0.3.3-1) ... 206s Setting up r-cran-littler (0.3.20-2) ... 206s Setting up r-cran-bh (1.84.0-1) ... 206s Setting up r-cran-fs (1.6.5+dfsg-1) ... 206s Setting up r-cran-rcpp (1.0.14-1) ... 206s Setting up r-bioc-biocgenerics (0.52.0-2) ... 206s Setting up r-cran-rlang (1.1.5-1) ... 206s Setting up littler (0.3.20-2) ... 206s Setting up r-cran-xfun (0.51+dfsg-1) ... 206s Setting up r-cran-withr (3.0.2+dfsg-1) ... 206s Setting up r-cran-mime (0.12-2) ... 206s Setting up r-cran-base64enc (0.1-3-3) ... 206s Setting up r-cran-digest (0.6.37-1) ... 206s Setting up r-cran-yaml (2.3.10-1) ... 206s Setting up r-cran-evaluate (1.0.3-1) ... 206s Setting up r-cran-highr (0.11+dfsg-1) ... 206s Setting up r-cran-glue (1.8.0-1) ... 206s Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 206s Setting up r-cran-xtable (1:1.8-4-2) ... 206s Setting up r-cran-cli (3.6.4-1) ... 206s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 206s Setting up r-bioc-biocversion (3.20.0-2) ... 206s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 206s Setting up gcc (4:14.2.0-1ubuntu1) ... 206s Setting up r-cran-fastmap (1.2.0-1) ... 206s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 206s Setting up texlive-latex-base (2024.20250114-1) ... 206s Setting up r-cran-runit (0.4.33-1) ... 206s Setting up r-cran-later (1.4.1+dfsg-1) ... 206s Setting up r-cran-htmltools (0.5.8.1-1) ... 206s Setting up r-cran-tinytex (0.56-1) ... 206s Setting up r-cran-knitr (1.49+dfsg-1) ... 206s Setting up g++ (4:14.2.0-1ubuntu1) ... 206s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 206s Setting up r-cran-cachem (1.1.0-1) ... 206s Setting up r-cran-sass (0.4.9+dfsg-1) ... 206s Setting up build-essential (12.10ubuntu1) ... 206s Setting up r-bioc-graph (1.84.1-1) ... 206s Setting up r-bioc-rbgl (1.82.0+dfsg-2) ... 206s Setting up r-cran-fontawesome (0.5.3-1) ... 206s Setting up gfortran (4:14.2.0-1ubuntu1) ... 206s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 206s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 206s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 206s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 206s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 206s Setting up texlive-bibtex-extra (2024.20250114-1) ... 206s Setting up r-cran-memoise (2.0.1-1) ... 206s Setting up r-cran-promises (1.3.2+dfsg-1) ... 206s Setting up r-base-dev (4.4.3-1) ... 206s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 206s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 206s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 206s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 206s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 206s Setting up r-cran-bookdown (0.42+dfsg-1) ... 206s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 206s Processing triggers for libc-bin (2.41-1ubuntu2) ... 206s Processing triggers for man-db (2.13.0-1) ... 208s Processing triggers for install-info (7.1.1-1) ... 208s Processing triggers for tex-common (6.19) ... 209s Running updmap-sys. This may take some time... done. 209s Running mktexlsr /var/lib/texmf ... done. 209s Building format(s) --all. 239s This may take some time... done. 240s autopkgtest [18:23:17]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 240s autopkgtest [18:23:17]: test pkg-r-autopkgtest: [----------------------- 240s Test: Try to load the R library RBGL 240s 240s R version 4.4.3 (2025-02-28) -- "Trophy Case" 240s Copyright (C) 2025 The R Foundation for Statistical Computing 240s Platform: x86_64-pc-linux-gnu 240s 240s R is free software and comes with ABSOLUTELY NO WARRANTY. 240s You are welcome to redistribute it under certain conditions. 240s Type 'license()' or 'licence()' for distribution details. 240s 240s R is a collaborative project with many contributors. 240s Type 'contributors()' for more information and 240s 'citation()' on how to cite R or R packages in publications. 240s 240s Type 'demo()' for some demos, 'help()' for on-line help, or 240s 'help.start()' for an HTML browser interface to help. 240s Type 'q()' to quit R. 240s 240s > library('RBGL') 240s Loading required package: graph 240s Loading required package: BiocGenerics 240s 240s Attaching package: ‘BiocGenerics’ 240s 240s The following objects are masked from ‘package:stats’: 240s 240s IQR, mad, sd, var, xtabs 240s 240s The following objects are masked from ‘package:base’: 240s 240s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 240s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 240s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 240s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 240s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 240s table, tapply, union, unique, unsplit, which.max, which.min 240s 240s > 240s > 240s Other tests are currently unsupported! 240s They will be progressively added. 241s autopkgtest [18:23:18]: test pkg-r-autopkgtest: -----------------------] 241s autopkgtest [18:23:18]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 241s pkg-r-autopkgtest PASS 241s autopkgtest [18:23:18]: @@@@@@@@@@@@@@@@@@@@ summary 241s pkg-r-autopkgtest PASS 257s nova [W] Skipping flock for amd64 257s Creating nova instance adt-plucky-amd64-r-bioc-rbgl-20250315-181916-juju-7f2275-prod-proposed-migration-environment-15-0ebe6b40-8584-45bb-9355-633814c7c127 from image adt/ubuntu-plucky-amd64-server-20250306.img (UUID 60d877d7-b74c-4f24-920d-f4570db0a338)... 257s nova [W] Timed out waiting for 594a8e30-b989-4fd3-a857-2d23932ef73b to get deleted.