0s autopkgtest [21:59:37]: starting date and time: 2025-03-15 21:59:37+0000 0s autopkgtest [21:59:37]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [21:59:37]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.b19bekeb/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-oligo --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-15.secgroup --name adt-plucky-amd64-r-bioc-oligo-20250315-215936-juju-7f2275-prod-proposed-migration-environment-2-35adab51-0a4a-4d68-b27e-7e0a58121cf6 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 59s autopkgtest [22:00:36]: testbed dpkg architecture: amd64 59s autopkgtest [22:00:36]: testbed apt version: 2.9.31ubuntu1 59s autopkgtest [22:00:36]: @@@@@@@@@@@@@@@@@@@@ test bed setup 60s autopkgtest [22:00:37]: testbed release detected to be: None 60s autopkgtest [22:00:37]: updating testbed package index (apt update) 61s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 61s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 61s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 61s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 61s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 61s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 61s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 61s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 62s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 62s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 62s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 62s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 62s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 62s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 62s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 62s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 62s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 62s Fetched 1265 kB in 1s (1140 kB/s) 63s Reading package lists... 64s Reading package lists... 65s Building dependency tree... 65s Reading state information... 65s Calculating upgrade... 66s Calculating upgrade... 66s The following package was automatically installed and is no longer required: 66s libnl-genl-3-200 66s Use 'sudo apt autoremove' to remove it. 66s The following NEW packages will be installed: 66s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 66s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 66s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 66s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 66s The following packages will be upgraded: 66s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 66s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 66s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 66s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 66s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 66s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 66s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 66s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 66s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 66s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 66s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 66s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 66s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 66s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 66s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 66s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 66s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 66s parted pci.ids pciutils pinentry-curses python-apt-common python3 66s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 66s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 66s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 66s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 66s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 66s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 66s xz-utils 66s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 66s Need to get 829 MB of archives. 66s After this operation, 325 MB of additional disk space will be used. 66s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 66s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 66s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 67s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 68s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 69s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 69s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 69s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 69s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 69s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 69s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 69s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 69s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 69s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 69s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 69s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 69s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 69s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 69s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 69s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 69s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 69s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 69s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 69s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 69s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 69s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 69s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 69s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 69s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 70s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 70s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 70s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 70s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 70s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 70s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 70s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 70s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 70s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 70s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 70s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 70s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 70s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 70s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 70s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 70s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 70s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 70s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 70s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 70s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 70s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 70s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 70s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 70s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 70s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 70s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 70s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 70s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 70s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 70s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 70s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 70s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 70s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 70s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 70s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 70s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 70s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 70s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 70s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 70s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 70s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 70s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 70s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 70s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 70s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 70s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 70s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 70s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 70s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 70s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 70s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 71s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 71s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 71s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 71s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 71s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 71s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 71s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 71s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 71s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 71s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 71s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 71s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 71s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 71s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 71s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 71s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 71s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 71s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 71s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 71s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 71s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 71s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 71s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 71s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 71s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 72s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 72s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 72s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 72s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 90s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 90s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 90s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 90s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 90s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 90s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 90s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 90s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 91s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 91s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 95s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 95s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 95s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 95s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 95s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 95s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 95s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 96s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 96s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 96s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 96s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 96s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 96s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 96s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 96s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 96s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 96s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 96s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 96s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 96s Preconfiguring packages ... 96s Fetched 829 MB in 30s (27.9 MB/s) 97s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109140 files and directories currently installed.) 97s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu1_amd64.deb ... 97s Unpacking libc-dev-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 97s Preparing to unpack .../libc6-dev_2.41-1ubuntu1_amd64.deb ... 97s Unpacking libc6-dev:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 97s Preparing to unpack .../locales_2.41-1ubuntu1_all.deb ... 97s Unpacking locales (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 98s Preparing to unpack .../libc6_2.41-1ubuntu1_amd64.deb ... 98s Checking for services that may need to be restarted... 98s Checking init scripts... 98s Checking for services that may need to be restarted... 98s Checking init scripts... 98s Stopping some services possibly affected by the upgrade (will be restarted later): 98s cron: stopping...done. 98s 98s Unpacking libc6:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 98s Setting up libc6:amd64 (2.41-1ubuntu1) ... 98s Checking for services that may need to be restarted... 98s Checking init scripts... 98s Restarting services possibly affected by the upgrade: 99s cron: restarting...done. 99s 99s Services restarted successfully. 99s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 100s Preparing to unpack .../libgcc-s1_15-20250222-0ubuntu1_amd64.deb ... 100s Unpacking libgcc-s1:amd64 (15-20250222-0ubuntu1) over (15-20250213-1ubuntu1) ... 100s Setting up libgcc-s1:amd64 (15-20250222-0ubuntu1) ... 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 100s Preparing to unpack .../libstdc++6_15-20250222-0ubuntu1_amd64.deb ... 100s Unpacking libstdc++6:amd64 (15-20250222-0ubuntu1) over (15-20250213-1ubuntu1) ... 100s Setting up libstdc++6:amd64 (15-20250222-0ubuntu1) ... 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 100s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... 100s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ... 100s Setting up ncurses-base (6.5+20250216-2) ... 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 100s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ... 100s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ... 101s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ... 101s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ... 101s Setting up liblz4-1:amd64 (1.10.0-4) ... 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 101s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ... 101s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ... 101s Setting up liblzma5:amd64 (5.6.4-1) ... 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 101s Preparing to unpack .../libsystemd0_257.3-1ubuntu3_amd64.deb ... 101s Unpacking libsystemd0:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 101s Setting up libsystemd0:amd64 (257.3-1ubuntu3) ... 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 101s Preparing to unpack .../libnss-systemd_257.3-1ubuntu3_amd64.deb ... 101s Unpacking libnss-systemd:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 101s Preparing to unpack .../systemd-sysv_257.3-1ubuntu3_amd64.deb ... 101s Unpacking systemd-sysv (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 101s Preparing to unpack .../systemd-resolved_257.3-1ubuntu3_amd64.deb ... 101s Unpacking systemd-resolved (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 102s Preparing to unpack .../libpam-systemd_257.3-1ubuntu3_amd64.deb ... 102s Unpacking libpam-systemd:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 102s Preparing to unpack .../libsystemd-shared_257.3-1ubuntu3_amd64.deb ... 102s Unpacking libsystemd-shared:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 102s Setting up libsystemd-shared:amd64 (257.3-1ubuntu3) ... 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 102s Preparing to unpack .../systemd_257.3-1ubuntu3_amd64.deb ... 102s Unpacking systemd (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 102s Preparing to unpack .../systemd-timesyncd_257.3-1ubuntu3_amd64.deb ... 102s Unpacking systemd-timesyncd (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 102s Preparing to unpack .../systemd-cryptsetup_257.3-1ubuntu3_amd64.deb ... 102s Unpacking systemd-cryptsetup (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 102s Preparing to unpack .../udev_257.3-1ubuntu3_amd64.deb ... 102s Unpacking udev (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 102s Preparing to unpack .../libudev1_257.3-1ubuntu3_amd64.deb ... 102s Unpacking libudev1:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 102s Setting up libudev1:amd64 (257.3-1ubuntu3) ... 103s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 103s Preparing to unpack .../libcap-ng0_0.8.5-4build1_amd64.deb ... 103s Unpacking libcap-ng0:amd64 (0.8.5-4build1) over (0.8.5-4) ... 103s Setting up libcap-ng0:amd64 (0.8.5-4build1) ... 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 103s Preparing to unpack .../libaudit1_1%3a4.0.2-2ubuntu2_amd64.deb ... 103s Unpacking libaudit1:amd64 (1:4.0.2-2ubuntu2) over (1:4.0.2-2ubuntu1) ... 103s Setting up libaudit1:amd64 (1:4.0.2-2ubuntu2) ... 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 103s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu6_amd64.deb ... 103s Unpacking libseccomp2:amd64 (2.5.5-1ubuntu6) over (2.5.5-1ubuntu5) ... 103s Setting up libseccomp2:amd64 (2.5.5-1ubuntu6) ... 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 103s Preparing to unpack .../libselinux1_3.7-3ubuntu3_amd64.deb ... 103s Unpacking libselinux1:amd64 (3.7-3ubuntu3) over (3.7-3ubuntu2) ... 103s Setting up libselinux1:amd64 (3.7-3ubuntu3) ... 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 103s Preparing to unpack .../libapparmor1_4.1.0~beta5-0ubuntu8_amd64.deb ... 103s Unpacking libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) over (4.1.0~beta5-0ubuntu5) ... 103s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 103s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 103s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 104s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 104s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 104s Setting up apt (2.9.33) ... 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 105s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 105s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 105s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 105s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 105s Setting up python3-minimal (3.13.2-2) ... 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 105s Preparing to unpack .../0-python3_3.13.2-2_amd64.deb ... 105s Unpacking python3 (3.13.2-2) over (3.13.2-1) ... 105s Preparing to unpack .../1-libpython3.13_3.13.2-2_amd64.deb ... 105s Unpacking libpython3.13:amd64 (3.13.2-2) over (3.13.2-1) ... 105s Preparing to unpack .../2-media-types_13.0.0_all.deb ... 105s Unpacking media-types (13.0.0) over (12.0.0) ... 105s Preparing to unpack .../3-libncurses6_6.5+20250216-2_amd64.deb ... 105s Unpacking libncurses6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 105s Preparing to unpack .../4-libncursesw6_6.5+20250216-2_amd64.deb ... 105s Unpacking libncursesw6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 105s Preparing to unpack .../5-libtinfo6_6.5+20250216-2_amd64.deb ... 105s Unpacking libtinfo6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 105s Setting up libtinfo6:amd64 (6.5+20250216-2) ... 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 106s Preparing to unpack .../0-libsqlite3-0_3.46.1-2_amd64.deb ... 106s Unpacking libsqlite3-0:amd64 (3.46.1-2) over (3.46.1-1) ... 106s Preparing to unpack .../1-python3.13_3.13.2-2_amd64.deb ... 106s Unpacking python3.13 (3.13.2-2) over (3.13.2-1) ... 106s Preparing to unpack .../2-python3.13-minimal_3.13.2-2_amd64.deb ... 106s Unpacking python3.13-minimal (3.13.2-2) over (3.13.2-1) ... 106s Preparing to unpack .../3-libpython3.13-minimal_3.13.2-2_amd64.deb ... 106s Unpacking libpython3.13-minimal:amd64 (3.13.2-2) over (3.13.2-1) ... 106s Preparing to unpack .../4-libpython3.13-stdlib_3.13.2-2_amd64.deb ... 106s Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 106s Preparing to unpack .../5-libpython3-stdlib_3.13.2-2_amd64.deb ... 106s Unpacking libpython3-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 106s Preparing to unpack .../6-rsync_3.4.1+ds1-3_amd64.deb ... 106s Unpacking rsync (3.4.1+ds1-3) over (3.4.1-0syncable1) ... 106s Selecting previously unselected package libdebuginfod-common. 106s Preparing to unpack .../7-libdebuginfod-common_0.192-4_all.deb ... 106s Unpacking libdebuginfod-common (0.192-4) ... 106s Preparing to unpack .../8-libsemanage-common_3.7-2.1build1_all.deb ... 106s Unpacking libsemanage-common (3.7-2.1build1) over (3.7-2.1) ... 106s Setting up libsemanage-common (3.7-2.1build1) ... 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109155 files and directories currently installed.) 107s Preparing to unpack .../libsemanage2_3.7-2.1build1_amd64.deb ... 107s Unpacking libsemanage2:amd64 (3.7-2.1build1) over (3.7-2.1) ... 107s Setting up libsemanage2:amd64 (3.7-2.1build1) ... 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109155 files and directories currently installed.) 107s Preparing to unpack .../libassuan9_3.0.2-2_amd64.deb ... 107s Unpacking libassuan9:amd64 (3.0.2-2) over (3.0.1-2) ... 107s Setting up libassuan9:amd64 (3.0.2-2) ... 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109155 files and directories currently installed.) 107s Preparing to unpack .../00-gir1.2-girepository-2.0_1.83.4-1_amd64.deb ... 107s Unpacking gir1.2-girepository-2.0:amd64 (1.83.4-1) over (1.82.0-4) ... 107s Preparing to unpack .../01-gir1.2-glib-2.0_2.84.0-1_amd64.deb ... 107s Unpacking gir1.2-glib-2.0:amd64 (2.84.0-1) over (2.83.5-1) ... 107s Preparing to unpack .../02-libglib2.0-0t64_2.84.0-1_amd64.deb ... 107s Unpacking libglib2.0-0t64:amd64 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.../23-parted_3.6-5_amd64.deb ... 110s Unpacking parted (3.6-5) over (3.6-4build1) ... 110s Preparing to unpack .../24-libparted2t64_3.6-5_amd64.deb ... 110s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 110s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 110s Unpacking libparted2t64:amd64 (3.6-5) over (3.6-4build1) ... 110s Preparing to unpack .../25-pci.ids_0.0~2025.03.09-1_all.deb ... 110s Unpacking pci.ids (0.0~2025.03.09-1) over (0.0~2025.02.12-1) ... 110s Preparing to unpack .../26-pciutils_1%3a3.13.0-2_amd64.deb ... 110s Unpacking pciutils (1:3.13.0-2) over (1:3.13.0-1) ... 110s Preparing to unpack .../27-libpci3_1%3a3.13.0-2_amd64.deb ... 110s Unpacking libpci3:amd64 (1:3.13.0-2) over (1:3.13.0-1) ... 110s Preparing to unpack .../28-strace_6.13+ds-1ubuntu1_amd64.deb ... 110s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 110s Preparing to unpack .../29-xz-utils_5.6.4-1_amd64.deb ... 110s Unpacking xz-utils (5.6.4-1) over (5.6.3-1) ... 111s Preparing to unpack .../30-ubuntu-standard_1.549_amd64.deb ... 111s Unpacking ubuntu-standard (1.549) over (1.548) ... 111s Preparing to unpack .../31-libgprofng0_2.44-3ubuntu1_amd64.deb ... 111s Unpacking libgprofng0:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 111s Preparing to unpack .../32-libctf0_2.44-3ubuntu1_amd64.deb ... 111s Unpacking libctf0:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 111s Preparing to unpack .../33-libctf-nobfd0_2.44-3ubuntu1_amd64.deb ... 111s Unpacking libctf-nobfd0:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 111s Preparing to unpack .../34-binutils-x86-64-linux-gnu_2.44-3ubuntu1_amd64.deb ... 111s Unpacking binutils-x86-64-linux-gnu (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 111s Preparing to unpack .../35-libbinutils_2.44-3ubuntu1_amd64.deb ... 111s Unpacking libbinutils:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 111s Preparing to unpack .../36-binutils_2.44-3ubuntu1_amd64.deb ... 111s Unpacking binutils (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 111s Preparing to unpack .../37-binutils-common_2.44-3ubuntu1_amd64.deb ... 111s Unpacking binutils-common:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 111s Preparing to unpack .../38-libsframe1_2.44-3ubuntu1_amd64.deb ... 111s Unpacking libsframe1:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 111s Preparing to unpack .../39-hwdata_0.393-3_all.deb ... 111s Unpacking hwdata (0.393-3) over (0.392-1) ... 111s Selecting previously unselected package pnp.ids. 111s Preparing to unpack .../40-pnp.ids_0.393-3_all.deb ... 111s Unpacking pnp.ids (0.393-3) ... 111s Preparing to unpack .../41-linux-tools-common_6.14.0-10.10_all.deb ... 111s Unpacking linux-tools-common (6.14.0-10.10) over (6.12.0-16.16) ... 111s Selecting previously unselected package bpftool. 111s Preparing to unpack .../42-bpftool_7.6.0+6.14.0-10.10_amd64.deb ... 111s Unpacking bpftool (7.6.0+6.14.0-10.10) ... 111s Preparing to unpack .../43-python3-markupsafe_2.1.5-1build4_amd64.deb ... 111s Unpacking python3-markupsafe (2.1.5-1build4) over (2.1.5-1build3) ... 111s Preparing to unpack .../44-python3-jinja2_3.1.5-2ubuntu1_all.deb ... 112s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 112s Preparing to unpack .../45-cloud-init-base_25.1-0ubuntu3_all.deb ... 112s Unpacking cloud-init-base (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 112s Preparing to unpack .../46-libbrotli1_1.1.0-2build4_amd64.deb ... 112s Unpacking libbrotli1:amd64 (1.1.0-2build4) over (1.1.0-2build3) ... 112s Preparing to unpack .../47-curl_8.12.1-3ubuntu1_amd64.deb ... 112s Unpacking curl (8.12.1-3ubuntu1) over (8.12.1-2ubuntu1) ... 112s Preparing to unpack .../48-libcurl4t64_8.12.1-3ubuntu1_amd64.deb ... 112s Unpacking libcurl4t64:amd64 (8.12.1-3ubuntu1) over (8.12.1-2ubuntu1) ... 112s Preparing to unpack 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.../56-initramfs-tools_0.146ubuntu1_all.deb ... 117s Unpacking initramfs-tools (0.146ubuntu1) over (0.145ubuntu3) ... 117s Preparing to unpack .../57-initramfs-tools-core_0.146ubuntu1_all.deb ... 117s Unpacking initramfs-tools-core (0.146ubuntu1) over (0.145ubuntu3) ... 117s Preparing to unpack .../58-initramfs-tools-bin_0.146ubuntu1_amd64.deb ... 117s Unpacking initramfs-tools-bin (0.146ubuntu1) over (0.145ubuntu3) ... 117s Selecting previously unselected package libdebuginfod1t64:amd64. 117s Preparing to unpack .../59-libdebuginfod1t64_0.192-4_amd64.deb ... 117s Unpacking libdebuginfod1t64:amd64 (0.192-4) ... 117s Preparing to unpack .../60-libftdi1-2_1.5-8build1_amd64.deb ... 117s Unpacking libftdi1-2:amd64 (1.5-8build1) over (1.5-8) ... 117s Preparing to unpack .../61-libgpgme11t64_1.24.2-1ubuntu2_amd64.deb ... 117s Unpacking libgpgme11t64:amd64 (1.24.2-1ubuntu2) over (1.24.2-1ubuntu1) ... 117s Preparing to unpack .../62-libjemalloc2_5.3.0-3_amd64.deb ... 117s Unpacking libjemalloc2:amd64 (5.3.0-3) over (5.3.0-2build1) ... 117s Selecting previously unselected package linux-modules-6.14.0-10-generic. 117s Preparing to unpack .../63-linux-modules-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 117s Unpacking linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 118s Selecting previously unselected package linux-image-6.14.0-10-generic. 118s Preparing to unpack .../64-linux-image-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 118s Unpacking linux-image-6.14.0-10-generic (6.14.0-10.10) ... 118s Selecting previously unselected package linux-modules-extra-6.14.0-10-generic. 118s Preparing to unpack .../65-linux-modules-extra-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 118s Unpacking linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 119s Preparing to unpack .../66-linux-generic_6.14.0-10.10_amd64.deb ... 119s Unpacking linux-generic (6.14.0-10.10) over (6.12.0-16.16+2) ... 119s Preparing to unpack .../67-linux-image-generic_6.14.0-10.10_amd64.deb ... 119s 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(1.0.6-6) over (1.0.6-5) ... 125s Preparing to unpack .../79-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ... 125s Unpacking python3-rpds-py (0.21.0-2ubuntu2) over (0.21.0-2ubuntu1) ... 125s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 125s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 125s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 125s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 125s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 125s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 126s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 126s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 126s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 126s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 126s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 126s Setting up media-types (13.0.0) ... 126s Installing new version of config file /etc/mime.types ... 126s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 126s Setting up ubuntu-kernel-accessories (1.549) ... 126s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 126s Setting up pci.ids (0.0~2025.03.09-1) ... 126s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 126s Setting up apt-utils (2.9.33) ... 126s Setting up libdebuginfod-common (0.192-4) ... 126s Setting up exfatprogs (1.2.8-1) ... 126s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 126s Setting up bpftool (7.6.0+6.14.0-10.10) ... 126s Setting up libestr0:amd64 (0.1.11-2) ... 126s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 126s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 126s Setting up dosfstools (4.2-1.2) ... 126s Setting up rsyslog (8.2412.0-2ubuntu2) ... 126s info: The user `syslog' is already a member of `adm'. 127s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 127s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 127s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 127s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 127s Setting up systemd (257.3-1ubuntu3) ... 127s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 127s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 128s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 129s Setting up libparted2t64:amd64 (3.6-5) ... 129s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 129s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 129s Setting up linux-headers-generic (6.14.0-10.10) ... 129s Setting up libjemalloc2:amd64 (5.3.0-3) ... 129s Setting up locales (2.41-1ubuntu1) ... 129s Installing new version of config file /etc/locale.alias ... 130s Generating locales (this might take a while)... 131s en_US.UTF-8... done 131s Generation complete. 131s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 131s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 131s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 131s Installing new version of config file /etc/apparmor.d/fusermount3 ... 131s Installing new version of config file /etc/apparmor.d/lsusb ... 131s Installing new version of config file /etc/apparmor.d/openvpn ... 133s Reloading AppArmor profiles 134s Setting up libftdi1-2:amd64 (1.5-8build1) ... 134s Setting up libglib2.0-data (2.84.0-1) ... 134s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 134s Setting up libncurses6:amd64 (6.5+20250216-2) ... 134s Setting up strace (6.13+ds-1ubuntu1) ... 134s Setting up xz-utils (5.6.4-1) ... 134s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 135s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 135s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 135s Setting up udev (257.3-1ubuntu3) ... 136s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 139s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 139s Setting up libpci3:amd64 (1:3.13.0-2) ... 139s Setting up whiptail (0.52.24-4ubuntu2) ... 139s Setting up python-apt-common (2.9.9build1) ... 139s Setting up pnp.ids (0.393-3) ... 139s Setting up libnl-3-200:amd64 (3.7.0-1) ... 139s Setting up python3.13-minimal (3.13.2-2) ... 140s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 140s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 140s Setting up libc-dev-bin (2.41-1ubuntu1) ... 140s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 140s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 140s Setting up rsync (3.4.1+ds1-3) ... 141s rsync.service is a disabled or a static unit not running, not starting it. 141s Setting up python3.13-gdbm (3.13.2-2) ... 141s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 141s Setting up systemd-resolved (257.3-1ubuntu3) ... 141s Setting up initramfs-tools-bin (0.146ubuntu1) ... 141s Setting up ncurses-term (6.5+20250216-2) ... 141s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 141s Setting up libpython3.13:amd64 (3.13.2-2) ... 141s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 141s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 141s Setting up systemd-sysv (257.3-1ubuntu3) ... 141s Setting up linux-headers-virtual (6.14.0-10.10) ... 141s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 141s Setting up python3.13 (3.13.2-2) ... 142s Setting up htop (3.4.0-2) ... 142s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 145s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 145s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 145s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 145s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 145s Setting up parted (3.6-5) ... 145s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 145s Setting up python3 (3.13.2-2) ... 146s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 146s Setting up python3-markupsafe (2.1.5-1build4) ... 146s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 148s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 148s Setting up hwdata (0.393-3) ... 148s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 149s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 149s No schema files found: doing nothing. 149s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 149s Setting up linux-perf (6.14.0-10.10) ... 149s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 149s Setting up pciutils (1:3.13.0-2) ... 149s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 149s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 149s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 149s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 149s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 149s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 149s Setting up curl (8.12.1-3ubuntu1) ... 149s Setting up linux-image-virtual (6.14.0-10.10) ... 149s Setting up initramfs-tools-core (0.146ubuntu1) ... 149s Setting up linux-tools-common (6.14.0-10.10) ... 149s Setting up python3-systemd (235-1build6) ... 149s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 149s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 149s Setting up linux-image-generic (6.14.0-10.10) ... 149s Setting up python3-dbus (1.3.2-5build5) ... 149s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 149s Setting up initramfs-tools (0.146ubuntu1) ... 149s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 149s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 149s update-initramfs: deferring update (trigger activated) 149s Setting up linux-generic (6.14.0-10.10) ... 149s Setting up ubuntu-minimal (1.549) ... 149s Setting up python3-apt (2.9.9build1) ... 149s Setting up python3-bcrypt (4.2.0-2.1build1) ... 150s Setting up python3-yaml (6.0.2-1build2) ... 150s Setting up libfwupd3:amd64 (2.0.6-4) ... 150s Setting up python3-lazr.uri (1.0.6-6) ... 150s Setting up binutils (2.44-3ubuntu1) ... 150s Setting up ubuntu-standard (1.549) ... 150s Setting up cloud-init-base (25.1-0ubuntu3) ... 152s Setting up linux-virtual (6.14.0-10.10) ... 152s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 152s Setting up python3-gi (3.50.0-4build1) ... 152s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 152s Setting up fwupd (2.0.6-4) ... 152s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 152s fwupd.service is a disabled or a static unit not running, not starting it. 153s Setting up cloud-init (25.1-0ubuntu3) ... 153s Processing triggers for man-db (2.13.0-1) ... 155s Processing triggers for dbus (1.16.2-1ubuntu1) ... 155s Processing triggers for shared-mime-info (2.4-5) ... 155s Warning: program compiled against libxml 212 using older 209 155s Processing triggers for libc-bin (2.41-1ubuntu1) ... 155s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 155s /etc/kernel/postinst.d/initramfs-tools: 155s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 155s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 169s /etc/kernel/postinst.d/zz-update-grub: 169s Sourcing file `/etc/default/grub' 169s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 169s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 169s Generating grub configuration file ... 169s Found linux image: /boot/vmlinuz-6.14.0-10-generic 169s Found initrd image: /boot/initrd.img-6.14.0-10-generic 169s Found linux image: /boot/vmlinuz-6.12.0-16-generic 169s Found initrd image: /boot/initrd.img-6.12.0-16-generic 169s Found linux image: /boot/vmlinuz-6.11.0-8-generic 169s Found initrd image: /boot/initrd.img-6.11.0-8-generic 170s Warning: os-prober will not be executed to detect other bootable partitions. 170s Systems on them will not be added to the GRUB boot configuration. 170s Check GRUB_DISABLE_OS_PROBER documentation entry. 170s Adding boot menu entry for UEFI Firmware Settings ... 170s done 170s Processing triggers for initramfs-tools (0.146ubuntu1) ... 170s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 170s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 184s Reading package lists... 184s Building dependency tree... 184s Reading state information... 184s Solving dependencies... 185s The following packages will be REMOVED: 185s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 185s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 185s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 185s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 185s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 185s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 185s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 185s linux-tools-6.12.0-16-generic* 185s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 185s After this operation, 545 MB disk space will be freed. 185s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 185s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 185s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 185s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 185s Removing libpython3.12t64:amd64 (3.12.9-1) ... 185s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 185s Removing libnsl2:amd64 (1.3.0-3build3) ... 185s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 186s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 186s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 189s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 190s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 192s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 193s /etc/kernel/postrm.d/initramfs-tools: 193s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 193s /etc/kernel/postrm.d/zz-update-grub: 193s Sourcing file `/etc/default/grub' 193s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 193s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 193s Generating grub configuration file ... 193s Found linux image: /boot/vmlinuz-6.14.0-10-generic 193s Found initrd image: /boot/initrd.img-6.14.0-10-generic 193s Found linux image: /boot/vmlinuz-6.12.0-16-generic 193s Found initrd image: /boot/initrd.img-6.12.0-16-generic 194s Warning: os-prober will not be executed to detect other bootable partitions. 194s Systems on them will not be added to the GRUB boot configuration. 194s Check GRUB_DISABLE_OS_PROBER documentation entry. 194s Adding boot menu entry for UEFI Firmware Settings ... 194s done 194s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 194s W: Removing the running kernel 194s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 194s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 194s /etc/kernel/postrm.d/initramfs-tools: 194s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 194s /etc/kernel/postrm.d/zz-update-grub: 194s Sourcing file `/etc/default/grub' 194s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 194s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 194s Generating grub configuration file ... 194s Found linux image: /boot/vmlinuz-6.14.0-10-generic 194s Found initrd image: /boot/initrd.img-6.14.0-10-generic 195s Warning: os-prober will not be executed to detect other bootable partitions. 195s Systems on them will not be added to the GRUB boot configuration. 195s Check GRUB_DISABLE_OS_PROBER documentation entry. 195s Adding boot menu entry for UEFI Firmware Settings ... 195s done 195s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 195s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 197s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 197s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 197s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 197s Processing triggers for libc-bin (2.41-1ubuntu1) ... 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 197s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 197s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 197s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 197s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 197s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 197s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 197s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 198s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 198s autopkgtest [22:02:55]: upgrading testbed (apt dist-upgrade and autopurge) 198s Reading package lists... 198s Building dependency tree... 198s Reading state information... 199s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 199s Starting 2 pkgProblemResolver with broken count: 0 199s Done 200s Entering ResolveByKeep 200s 200s Calculating upgrade... 201s The following packages will be upgraded: 201s libc-bin libc-dev-bin libc6 libc6-dev locales 201s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 201s Need to get 10.5 MB of archives. 201s After this operation, 1024 B of additional disk space will be used. 201s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 201s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 201s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 201s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 201s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 202s Preconfiguring packages ... 202s Fetched 10.5 MB in 1s (10.5 MB/s) 202s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 202s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 202s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 202s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 202s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 202s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 203s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 203s Setting up libc6:amd64 (2.41-1ubuntu2) ... 203s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 203s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 203s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 203s Setting up libc-bin (2.41-1ubuntu2) ... 203s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 203s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 203s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 204s Setting up locales (2.41-1ubuntu2) ... 205s Generating locales (this might take a while)... 206s en_US.UTF-8... done 206s Generation complete. 206s Setting up libc-dev-bin (2.41-1ubuntu2) ... 206s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 206s Processing triggers for man-db (2.13.0-1) ... 207s Processing triggers for systemd (257.3-1ubuntu3) ... 208s Reading package lists... 209s Building dependency tree... 209s Reading state information... 209s Starting pkgProblemResolver with broken count: 0 209s Starting 2 pkgProblemResolver with broken count: 0 209s Done 210s Solving dependencies... 210s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 210s autopkgtest [22:03:07]: rebooting testbed after setup commands that affected boot 233s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 240s autopkgtest [22:03:37]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 243s autopkgtest [22:03:40]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-oligo 246s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-oligo 1.70.0+ds-2 (dsc) [2274 B] 246s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-oligo 1.70.0+ds-2 (tar) [178 kB] 246s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-oligo 1.70.0+ds-2 (diff) [4724 B] 246s gpgv: Signature made Mon Jan 13 14:20:42 2025 UTC 246s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 246s gpgv: issuer "crusoe@debian.org" 246s gpgv: Can't check signature: No public key 246s dpkg-source: warning: cannot verify inline signature for ./r-bioc-oligo_1.70.0+ds-2.dsc: no acceptable signature found 246s autopkgtest [22:03:43]: testing package r-bioc-oligo version 1.70.0+ds-2 247s autopkgtest [22:03:44]: build not needed 249s autopkgtest [22:03:46]: test pkg-r-autopkgtest: preparing testbed 250s Reading package lists... 250s Building dependency tree... 250s Reading state information... 250s Starting pkgProblemResolver with broken count: 0 250s Starting 2 pkgProblemResolver with broken count: 0 250s Done 251s The following NEW packages will be installed: 251s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 251s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 251s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 251s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 251s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 251s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 251s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 251s libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev libdeflate0 251s libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 libgomp1 251s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 251s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 251s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 251s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 251s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 251s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 251s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 251s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 251s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev 251s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 251s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 251s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 252s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6 252s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 252s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 252s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 252s littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc 252s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 252s r-bioc-affxparser r-bioc-affyio r-bioc-annotate r-bioc-annotationdbi 252s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocstyle 252s r-bioc-biocversion r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray 252s r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 252s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-limma 252s r-bioc-matrixgenerics r-bioc-oligo r-bioc-oligoclasses r-bioc-preprocesscore 252s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 252s r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 252s r-cran-abind r-cran-askpass r-cran-base64enc r-cran-biocmanager r-cran-bit 252s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 252s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 252s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest 252s r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-ff 252s r-cran-filelock r-cran-fontawesome r-cran-foreach r-cran-fs r-cran-generics 252s r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv 252s r-cran-httr r-cran-httr2 r-cran-iterators r-cran-jquerylib r-cran-jsonlite 252s r-cran-knitr r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 252s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 252s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 252s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 252s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 252s r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit r-cran-sass 252s r-cran-shiny r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr 252s r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect 252s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml 252s r-cran-xml2 r-cran-xtable r-cran-yaml t1utils tex-common texlive-base 252s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 252s xdg-utils zip zlib1g-dev 252s 0 upgraded, 269 newly installed, 0 to remove and 0 not upgraded. 252s Need to get 421 MB of archives. 252s After this operation, 1180 MB of additional disk space will be used. 252s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 252s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 252s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 253s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 253s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 253s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 253s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 253s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 253s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 253s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 253s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 253s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 253s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 253s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 253s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 253s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 253s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 255s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 255s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 255s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 255s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 255s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 255s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 255s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 255s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 255s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 255s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 255s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 255s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 255s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 255s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 255s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 256s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 256s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 256s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 256s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 256s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 256s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 256s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 256s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 256s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 256s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 256s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 256s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 256s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 256s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 256s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 256s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 256s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 256s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 256s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 257s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 257s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 257s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 257s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 257s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 257s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 257s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 257s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 257s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 257s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 257s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 257s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 257s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 257s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 257s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 257s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 257s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 257s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 257s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 257s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 257s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 257s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 257s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 257s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 257s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 257s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 257s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 257s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 257s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 257s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 257s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 257s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 257s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB] 257s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 257s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 258s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 258s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 258s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 258s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 258s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 258s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 258s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 258s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 258s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 258s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 258s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 258s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 258s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 258s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 258s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 258s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 258s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 258s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 258s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 258s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB] 258s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 258s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 258s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 258s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB] 258s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 259s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 259s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB] 259s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 259s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 259s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 259s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 259s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 259s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 259s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 259s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 259s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 259s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 259s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 259s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 259s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 259s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 259s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 259s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 260s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 260s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 260s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 260s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 260s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 260s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 260s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 261s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 261s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 261s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 261s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 261s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 261s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 261s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 261s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-affxparser amd64 1.78.0-2 [1021 kB] 261s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 261s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-affyio amd64 1.76.0-2 [97.6 kB] 261s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 261s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 261s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 261s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 261s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 261s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB] 261s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 261s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 261s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 261s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 261s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 261s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 261s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 261s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 261s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 262s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 262s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 262s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 262s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 262s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 262s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 262s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 262s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 262s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 262s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 262s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 262s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 262s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 262s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 262s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 262s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 262s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 262s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 262s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 263s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 263s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 263s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 263s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 263s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB] 263s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 263s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 263s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 263s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 263s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 263s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 263s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 263s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 263s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 263s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 263s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 264s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 264s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 264s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbplyr all 2.5.0+dfsg-1 [1233 kB] 264s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 264s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 264s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 264s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 264s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 264s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 264s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 264s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 264s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 264s Get:209 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 265s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 265s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 265s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 265s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 265s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 265s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 265s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 265s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 265s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 265s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 265s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 265s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 265s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 265s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 265s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 265s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 265s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 265s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 265s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 266s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 266s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 266s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB] 266s Get:232 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 266s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB] 266s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB] 267s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB] 267s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 269s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 269s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 269s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 269s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 269s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 269s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr2 all 1.1.1-1 [752 kB] 269s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml2 amd64 1.3.7-1 [334 kB] 269s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biomart all 2.62.1+dfsg-1 [444 kB] 269s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 269s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 269s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 269s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 269s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 269s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 269s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1392 kB] 269s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 269s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 269s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genefilter amd64 1.88.0-2 [1243 kB] 269s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 269s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 270s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB] 270s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 270s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 270s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-iterators all 1.0.14-1 [336 kB] 270s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-foreach all 1.5.2-1 [124 kB] 270s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ff amd64 4.5.2+ds-1 [1019 kB] 270s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-oligoclasses all 1.68.0-2 [1259 kB] 270s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-preprocesscore amd64 1.68.0+ds-2 [174 kB] 270s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-oligo amd64 1.70.0+ds-2 [916 kB] 270s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB] 270s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 270s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 270s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 271s Preconfiguring packages ... 271s Fetched 421 MB in 18s (22.8 MB/s) 271s Selecting previously unselected package libisl23:amd64. 271s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 271s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 271s Unpacking libisl23:amd64 (0.27-1) ... 271s Selecting previously unselected package libmpc3:amd64. 271s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 271s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 271s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 271s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 271s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 271s Selecting previously unselected package cpp-14. 271s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 271s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 271s Selecting previously unselected package cpp-x86-64-linux-gnu. 271s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 271s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 271s Selecting previously unselected package cpp. 271s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 272s Unpacking cpp (4:14.2.0-1ubuntu1) ... 272s Selecting previously unselected package libcc1-0:amd64. 272s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 272s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 272s Selecting previously unselected package libgomp1:amd64. 272s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 272s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 272s Selecting previously unselected package libitm1:amd64. 272s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 272s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 272s Selecting previously unselected package libasan8:amd64. 272s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 272s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 272s Selecting previously unselected package liblsan0:amd64. 272s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 272s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 272s Selecting previously unselected package libtsan2:amd64. 272s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 272s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 272s Selecting previously unselected package libubsan1:amd64. 272s Preparing to unpack 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274s Selecting previously unselected package fonts-glyphicons-halflings. 274s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 274s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 274s Selecting previously unselected package fonts-lmodern. 274s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ... 274s Unpacking fonts-lmodern (2.005-1) ... 274s Selecting previously unselected package fonts-mathjax. 274s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 274s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 275s Selecting previously unselected package libgfortran5:amd64. 275s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 275s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 275s Selecting previously unselected package libgfortran-14-dev:amd64. 275s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 275s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) 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(10.45-1) ... 278s Selecting previously unselected package libpkgconf3:amd64. 278s Preparing to unpack .../101-libpkgconf3_1.8.1-4_amd64.deb ... 278s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 278s Selecting previously unselected package zlib1g-dev:amd64. 278s Preparing to unpack .../102-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 278s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 278s Selecting previously unselected package libpng-dev:amd64. 278s Preparing to unpack .../103-libpng-dev_1.6.47-1_amd64.deb ... 278s Unpacking libpng-dev:amd64 (1.6.47-1) ... 278s Selecting previously unselected package libpotrace0:amd64. 278s Preparing to unpack .../104-libpotrace0_1.16-2build1_amd64.deb ... 278s Unpacking libpotrace0:amd64 (1.16-2build1) ... 278s Selecting previously unselected package libptexenc1:amd64. 278s Preparing to unpack .../105-libptexenc1_2024.20240313.70630+ds-6_amd64.deb ... 278s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-6) ... 278s Selecting previously unselected package libreadline-dev:amd64. 278s Preparing to unpack .../106-libreadline-dev_8.2-6_amd64.deb ... 278s Unpacking libreadline-dev:amd64 (8.2-6) ... 279s Selecting previously unselected package libsharpyuv0:amd64. 279s Preparing to unpack .../107-libsharpyuv0_1.5.0-0.1_amd64.deb ... 279s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 279s Selecting previously unselected package libsm6:amd64. 279s Preparing to unpack .../108-libsm6_2%3a1.2.4-1_amd64.deb ... 279s Unpacking libsm6:amd64 (2:1.2.4-1) ... 279s Selecting previously unselected package libsynctex2:amd64. 279s Preparing to unpack .../109-libsynctex2_2024.20240313.70630+ds-6_amd64.deb ... 279s Unpacking libsynctex2:amd64 (2024.20240313.70630+ds-6) ... 279s Selecting previously unselected package libtcl8.6:amd64. 279s Preparing to unpack .../110-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 279s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 279s Selecting previously unselected package libteckit0:amd64. 279s Preparing to unpack .../111-libteckit0_2.5.12+ds1-1_amd64.deb ... 279s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 279s Selecting previously unselected package libtexlua53-5:amd64. 279s Preparing to unpack .../112-libtexlua53-5_2024.20240313.70630+ds-6_amd64.deb ... 279s Unpacking libtexlua53-5:amd64 (2024.20240313.70630+ds-6) ... 279s Selecting previously unselected package libjbig0:amd64. 279s Preparing to unpack .../113-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 279s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 279s Selecting previously unselected package libwebp7:amd64. 279s Preparing to unpack .../114-libwebp7_1.5.0-0.1_amd64.deb ... 279s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 279s Selecting previously unselected package libtiff6:amd64. 279s Preparing to unpack .../115-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 279s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 279s Selecting previously unselected package libxft2:amd64. 279s Preparing to unpack .../116-libxft2_2.3.6-1build1_amd64.deb ... 279s Unpacking libxft2:amd64 (2.3.6-1build1) ... 279s Selecting previously unselected package libxss1:amd64. 279s Preparing to unpack .../117-libxss1_1%3a1.2.3-1build3_amd64.deb ... 279s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 279s Selecting previously unselected package libtk8.6:amd64. 279s Preparing to unpack .../118-libtk8.6_8.6.16-1_amd64.deb ... 279s Unpacking libtk8.6:amd64 (8.6.16-1) ... 279s Selecting previously unselected package libxt6t64:amd64. 279s Preparing to unpack .../119-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 279s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 279s Selecting previously unselected package libxmu6:amd64. 279s Preparing to unpack .../120-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 279s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 279s Selecting previously unselected package libxpm4:amd64. 279s Preparing to unpack .../121-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 279s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 279s Selecting previously unselected package libxaw7:amd64. 279s Preparing to unpack .../122-libxaw7_2%3a1.0.16-1_amd64.deb ... 279s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 279s Selecting previously unselected package libxi6:amd64. 279s Preparing to unpack .../123-libxi6_2%3a1.8.2-1_amd64.deb ... 279s Unpacking libxi6:amd64 (2:1.8.2-1) ... 279s Selecting previously unselected package libzzip-0-13t64:amd64. 279s Preparing to unpack .../124-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 279s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 279s Selecting previously unselected package zip. 279s Preparing to unpack .../125-zip_3.0-14ubuntu2_amd64.deb ... 279s Unpacking zip (3.0-14ubuntu2) ... 279s Selecting previously unselected package unzip. 279s Preparing to unpack .../126-unzip_6.0-28ubuntu6_amd64.deb ... 279s Unpacking unzip (6.0-28ubuntu6) ... 279s Selecting previously unselected package xdg-utils. 279s Preparing to unpack .../127-xdg-utils_1.2.1-2ubuntu1_all.deb ... 279s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 279s Selecting previously unselected package r-base-core. 279s Preparing to unpack .../128-r-base-core_4.4.3-1_amd64.deb ... 280s Unpacking r-base-core (4.4.3-1) ... 280s Selecting previously unselected package r-cran-littler. 280s Preparing to unpack .../129-r-cran-littler_0.3.20-2_amd64.deb ... 280s Unpacking r-cran-littler (0.3.20-2) ... 280s Selecting previously unselected package littler. 280s Preparing to unpack .../130-littler_0.3.20-2_all.deb ... 280s Unpacking littler (0.3.20-2) ... 280s Selecting previously unselected package node-bootstrap-sass. 280s Preparing to unpack .../131-node-bootstrap-sass_3.4.3-2_all.deb ... 280s Unpacking node-bootstrap-sass (3.4.3-2) ... 280s Selecting previously unselected package node-html5shiv. 280s Preparing to unpack .../132-node-html5shiv_3.7.3+dfsg-5_all.deb ... 280s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 280s Selecting previously unselected package node-normalize.css. 280s Preparing to unpack .../133-node-normalize.css_8.0.1-5_all.deb ... 280s Unpacking node-normalize.css (8.0.1-5) ... 280s Selecting previously unselected package pandoc-data. 280s Preparing to unpack .../134-pandoc-data_3.1.11.1-3build1_all.deb ... 280s Unpacking pandoc-data (3.1.11.1-3build1) ... 280s Selecting previously unselected package pandoc. 280s Preparing to unpack .../135-pandoc_3.1.11.1+ds-2_amd64.deb ... 280s Unpacking pandoc (3.1.11.1+ds-2) ... 281s Selecting previously unselected package liblzma-dev:amd64. 281s Preparing to unpack .../136-liblzma-dev_5.6.4-1_amd64.deb ... 281s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 281s Selecting previously unselected package pkgconf-bin. 281s Preparing to unpack .../137-pkgconf-bin_1.8.1-4_amd64.deb ... 281s Unpacking pkgconf-bin (1.8.1-4) ... 281s Selecting previously unselected package pkgconf:amd64. 281s Preparing to unpack .../138-pkgconf_1.8.1-4_amd64.deb ... 281s Unpacking pkgconf:amd64 (1.8.1-4) ... 281s Selecting previously unselected package libtirpc-dev:amd64. 281s Preparing to unpack .../139-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 281s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 281s Selecting previously unselected package r-base-dev. 281s Preparing to unpack .../140-r-base-dev_4.4.3-1_all.deb ... 281s Unpacking r-base-dev (4.4.3-1) ... 282s Selecting previously unselected package pkg-r-autopkgtest. 282s Preparing to unpack .../141-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 282s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 282s Selecting previously unselected package r-bioc-biocgenerics. 282s Preparing to unpack .../142-r-bioc-biocgenerics_0.52.0-2_all.deb ... 282s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 282s Selecting previously unselected package r-bioc-affxparser. 282s Preparing to unpack .../143-r-bioc-affxparser_1.78.0-2_amd64.deb ... 282s Unpacking r-bioc-affxparser (1.78.0-2) ... 282s Selecting previously unselected package r-bioc-zlibbioc. 282s Preparing to unpack .../144-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 282s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 282s Selecting previously unselected package r-bioc-affyio. 282s Preparing to unpack .../145-r-bioc-affyio_1.76.0-2_amd64.deb ... 282s Unpacking r-bioc-affyio (1.76.0-2) ... 282s Selecting previously unselected package r-bioc-biobase. 282s Preparing to unpack .../146-r-bioc-biobase_2.66.0-2_amd64.deb ... 282s Unpacking r-bioc-biobase (2.66.0-2) ... 282s Selecting previously unselected package r-bioc-s4vectors. 282s Preparing to unpack .../147-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 282s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 282s Selecting previously unselected package r-bioc-iranges. 282s Preparing to unpack .../148-r-bioc-iranges_2.40.1-2_amd64.deb ... 282s Unpacking r-bioc-iranges (2.40.1-2) ... 282s Selecting previously unselected package r-cran-dbi. 282s Preparing to unpack .../149-r-cran-dbi_1.2.3-1_all.deb ... 282s Unpacking r-cran-dbi (1.2.3-1) ... 282s Selecting previously unselected package r-cran-bit. 282s Preparing to unpack .../150-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 282s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 282s Selecting previously unselected package r-cran-bit64. 282s Preparing to unpack .../151-r-cran-bit64_4.6.0-1-1ubuntu2_amd64.deb ... 282s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 282s Selecting previously unselected package r-cran-rlang. 282s Preparing to unpack .../152-r-cran-rlang_1.1.5-1_amd64.deb ... 282s Unpacking r-cran-rlang (1.1.5-1) ... 282s Selecting previously unselected package r-cran-cli. 282s Preparing to unpack .../153-r-cran-cli_3.6.4-1_amd64.deb ... 282s Unpacking r-cran-cli (3.6.4-1) ... 282s Selecting previously unselected package r-cran-glue. 282s Preparing to unpack .../154-r-cran-glue_1.8.0-1_amd64.deb ... 282s Unpacking r-cran-glue (1.8.0-1) ... 282s Selecting previously unselected package r-cran-lifecycle. 282s Preparing to unpack .../155-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 282s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 282s Selecting previously unselected package r-cran-vctrs. 282s Preparing to unpack .../156-r-cran-vctrs_0.6.5-1_amd64.deb ... 282s Unpacking r-cran-vctrs (0.6.5-1) ... 282s Selecting previously unselected package r-cran-blob. 282s Preparing to unpack .../157-r-cran-blob_1.2.4-1_all.deb ... 282s Unpacking r-cran-blob (1.2.4-1) ... 282s Selecting previously unselected package r-cran-fastmap. 283s Preparing to unpack .../158-r-cran-fastmap_1.2.0-1_amd64.deb ... 283s Unpacking r-cran-fastmap (1.2.0-1) ... 283s Selecting previously unselected package r-cran-cachem. 283s Preparing to unpack .../159-r-cran-cachem_1.1.0-1_amd64.deb ... 283s Unpacking r-cran-cachem (1.1.0-1) ... 283s Selecting previously unselected package r-cran-memoise. 283s Preparing to unpack .../160-r-cran-memoise_2.0.1-1_all.deb ... 283s Unpacking r-cran-memoise (2.0.1-1) ... 283s Selecting previously unselected package r-cran-pkgconfig. 283s Preparing to unpack .../161-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 283s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 283s Selecting previously unselected package r-cran-plogr. 283s Preparing to unpack .../162-r-cran-plogr_0.2.0-3build1_all.deb ... 283s Unpacking r-cran-plogr (0.2.0-3build1) ... 283s Selecting previously unselected package r-cran-cpp11. 283s Preparing to unpack .../163-r-cran-cpp11_0.5.2-1_all.deb ... 283s Unpacking r-cran-cpp11 (0.5.2-1) ... 283s Selecting previously unselected package r-cran-rsqlite. 283s Preparing to unpack .../164-r-cran-rsqlite_2.3.9-1_amd64.deb ... 283s Unpacking r-cran-rsqlite (2.3.9-1) ... 283s Selecting previously unselected package r-cran-curl. 283s Preparing to unpack .../165-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 283s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 283s Selecting previously unselected package r-cran-jsonlite. 283s Preparing to unpack .../166-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 283s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 283s Selecting previously unselected package r-cran-mime. 283s Preparing to unpack .../167-r-cran-mime_0.12-2_amd64.deb ... 283s Unpacking r-cran-mime (0.12-2) ... 283s Selecting previously unselected package r-cran-sys. 283s Preparing to unpack .../168-r-cran-sys_3.4.3-1_amd64.deb ... 283s Unpacking r-cran-sys (3.4.3-1) ... 283s Selecting previously unselected package r-cran-askpass. 283s Preparing to unpack .../169-r-cran-askpass_1.2.1-1_amd64.deb ... 283s Unpacking r-cran-askpass (1.2.1-1) ... 283s Selecting previously unselected package r-cran-openssl. 283s Preparing to unpack .../170-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 283s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 283s Selecting previously unselected package r-cran-r6. 283s Preparing to unpack .../171-r-cran-r6_2.6.1-1_all.deb ... 283s Unpacking r-cran-r6 (2.6.1-1) ... 283s Selecting previously unselected package r-cran-httr. 283s Preparing to unpack .../172-r-cran-httr_1.4.7+dfsg-1_all.deb ... 283s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 283s Selecting previously unselected package r-cran-png. 283s Preparing to unpack .../173-r-cran-png_0.1-8-1build2_amd64.deb ... 283s Unpacking r-cran-png (0.1-8-1build2) ... 283s Selecting previously unselected package r-bioc-xvector. 283s Preparing to unpack .../174-r-bioc-xvector_0.46.0-2_amd64.deb ... 283s Unpacking r-bioc-xvector (0.46.0-2) ... 283s Selecting previously unselected package r-bioc-ucsc.utils. 283s Preparing to unpack .../175-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 283s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 283s Selecting previously unselected package r-bioc-genomeinfodbdata. 283s Preparing to unpack .../176-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 283s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 283s Selecting previously unselected package r-bioc-genomeinfodb. 283s Preparing to unpack .../177-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 283s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 284s Selecting previously unselected package r-cran-crayon. 284s Preparing to unpack .../178-r-cran-crayon_1.5.3-1_all.deb ... 284s Unpacking r-cran-crayon (1.5.3-1) ... 284s Selecting previously unselected package r-bioc-biostrings. 284s Preparing to unpack .../179-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 284s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 284s Selecting previously unselected package r-bioc-keggrest. 284s Preparing to unpack .../180-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 284s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 284s Selecting previously unselected package r-bioc-annotationdbi. 284s Preparing to unpack .../181-r-bioc-annotationdbi_1.68.0-2_all.deb ... 284s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 284s Selecting previously unselected package r-cran-xml. 284s Preparing to unpack .../182-r-cran-xml_3.99-0.18-1_amd64.deb ... 284s Unpacking r-cran-xml (3.99-0.18-1) ... 284s Selecting previously unselected package r-cran-xtable. 284s Preparing to unpack .../183-r-cran-xtable_1%3a1.8-4-2_all.deb ... 284s Unpacking r-cran-xtable (1:1.8-4-2) ... 284s Selecting previously unselected package r-bioc-annotate. 284s Preparing to unpack .../184-r-bioc-annotate_1.84.0+dfsg-2_all.deb ... 284s Unpacking r-bioc-annotate (1.84.0+dfsg-2) ... 284s Selecting previously unselected package r-cran-generics. 284s Preparing to unpack .../185-r-cran-generics_0.1.3-1_all.deb ... 284s Unpacking r-cran-generics (0.1.3-1) ... 284s Selecting previously unselected package r-cran-magrittr. 284s Preparing to unpack .../186-r-cran-magrittr_2.0.3-1_amd64.deb ... 284s Unpacking r-cran-magrittr (2.0.3-1) ... 284s Selecting previously unselected package r-cran-utf8. 284s Preparing to unpack .../187-r-cran-utf8_1.2.4-1_amd64.deb ... 284s Unpacking r-cran-utf8 (1.2.4-1) ... 284s Selecting previously unselected package r-cran-pillar. 284s Preparing to unpack .../188-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 284s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 284s Selecting previously unselected package r-cran-fansi. 284s Preparing to unpack .../189-r-cran-fansi_1.0.5-1_amd64.deb ... 284s Unpacking r-cran-fansi (1.0.5-1) ... 284s Selecting previously unselected package r-cran-tibble. 284s Preparing to unpack .../190-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 284s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 284s Selecting previously unselected package r-cran-withr. 284s Preparing to unpack .../191-r-cran-withr_3.0.2+dfsg-1_all.deb ... 284s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 285s Selecting previously unselected package r-cran-tidyselect. 285s Preparing to unpack .../192-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 285s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 285s Selecting previously unselected package r-cran-dplyr. 285s Preparing to unpack .../193-r-cran-dplyr_1.1.4-4_amd64.deb ... 285s Unpacking r-cran-dplyr (1.1.4-4) ... 285s Selecting previously unselected package r-cran-purrr. 285s Preparing to unpack .../194-r-cran-purrr_1.0.4-1_amd64.deb ... 285s Unpacking r-cran-purrr (1.0.4-1) ... 285s Selecting previously unselected package r-cran-stringi. 285s Preparing to unpack .../195-r-cran-stringi_1.8.4-1build1_amd64.deb ... 285s Unpacking r-cran-stringi (1.8.4-1build1) ... 285s Selecting previously unselected package r-cran-stringr. 285s Preparing to unpack .../196-r-cran-stringr_1.5.1-1_all.deb ... 285s Unpacking r-cran-stringr (1.5.1-1) ... 285s Selecting previously unselected package r-cran-tidyr. 285s Preparing to unpack .../197-r-cran-tidyr_1.3.1-1_amd64.deb ... 285s Unpacking r-cran-tidyr (1.3.1-1) ... 285s Selecting previously unselected package r-cran-dbplyr. 285s Preparing to unpack .../198-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ... 285s Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ... 285s Selecting previously unselected package r-cran-filelock. 285s Preparing to unpack .../199-r-cran-filelock_1.0.3-1_amd64.deb ... 285s Unpacking r-cran-filelock (1.0.3-1) ... 285s Selecting previously unselected package r-bioc-biocfilecache. 285s Preparing to unpack .../200-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 285s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 285s Selecting previously unselected package r-cran-base64enc. 285s Preparing to unpack .../201-r-cran-base64enc_0.1-3-3_amd64.deb ... 285s Unpacking r-cran-base64enc (0.1-3-3) ... 285s Selecting previously unselected package r-cran-digest. 285s Preparing to unpack .../202-r-cran-digest_0.6.37-1_amd64.deb ... 285s Unpacking r-cran-digest (0.6.37-1) ... 285s Selecting previously unselected package r-cran-htmltools. 285s Preparing to unpack .../203-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 285s Unpacking r-cran-htmltools (0.5.8.1-1) ... 285s Selecting previously unselected package r-cran-evaluate. 285s Preparing to unpack .../204-r-cran-evaluate_1.0.3-1_all.deb ... 285s Unpacking r-cran-evaluate (1.0.3-1) ... 285s Selecting previously unselected package r-cran-xfun. 285s Preparing to unpack .../205-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 285s Unpacking r-cran-xfun (0.51+dfsg-1) ... 285s Selecting previously unselected package r-cran-highr. 285s Preparing to unpack .../206-r-cran-highr_0.11+dfsg-1_all.deb ... 285s Unpacking r-cran-highr (0.11+dfsg-1) ... 285s Selecting previously unselected package r-cran-yaml. 285s Preparing to unpack .../207-r-cran-yaml_2.3.10-1_amd64.deb ... 285s Unpacking r-cran-yaml (2.3.10-1) ... 285s Selecting previously unselected package libjs-mathjax. 285s Preparing to unpack .../208-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 285s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 286s Selecting previously unselected package r-cran-knitr. 286s Preparing to unpack .../209-r-cran-knitr_1.49+dfsg-1_all.deb ... 286s Unpacking r-cran-knitr (1.49+dfsg-1) ... 286s Selecting previously unselected package r-cran-jquerylib. 286s Preparing to unpack .../210-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 286s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 286s Selecting previously unselected package r-cran-fs. 286s Preparing to unpack .../211-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 286s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 287s Selecting previously unselected package r-cran-rappdirs. 287s Preparing to unpack .../212-r-cran-rappdirs_0.3.3-1_amd64.deb ... 287s Unpacking r-cran-rappdirs (0.3.3-1) ... 287s Selecting previously unselected package r-cran-sass. 287s Preparing to unpack .../213-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 287s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 287s Selecting previously unselected package r-cran-bslib. 287s Preparing to unpack .../214-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 287s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 287s Selecting previously unselected package r-cran-fontawesome. 287s Preparing to unpack .../215-r-cran-fontawesome_0.5.3-1_all.deb ... 287s Unpacking r-cran-fontawesome (0.5.3-1) ... 287s Selecting previously unselected package r-cran-tinytex. 287s Preparing to unpack .../216-r-cran-tinytex_0.56-1_all.deb ... 287s Unpacking r-cran-tinytex (0.56-1) ... 287s Selecting previously unselected package libjs-modernizr. 287s Preparing to unpack .../217-libjs-modernizr_3.13.0-0.1_all.deb ... 287s Unpacking libjs-modernizr (3.13.0-0.1) ... 287s Selecting previously unselected package r-cran-pkgkitten. 287s Preparing to unpack .../218-r-cran-pkgkitten_0.2.4-1_all.deb ... 287s Unpacking r-cran-pkgkitten (0.2.4-1) ... 287s Selecting previously unselected package r-cran-rcpp. 287s Preparing to unpack .../219-r-cran-rcpp_1.0.14-1_amd64.deb ... 287s Unpacking r-cran-rcpp (1.0.14-1) ... 287s Selecting previously unselected package r-cran-later. 287s Preparing to unpack .../220-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 287s Unpacking r-cran-later (1.4.1+dfsg-1) ... 287s Selecting previously unselected package r-cran-promises. 287s Preparing to unpack .../221-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 287s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 287s Selecting previously unselected package r-cran-httpuv. 287s Preparing to unpack .../222-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 287s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 287s Selecting previously unselected package r-cran-sourcetools. 287s Preparing to unpack .../223-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 287s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 287s Selecting previously unselected package r-cran-commonmark. 287s Preparing to unpack .../224-r-cran-commonmark_1.9.2-2_amd64.deb ... 287s Unpacking r-cran-commonmark (1.9.2-2) ... 288s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 288s Preparing to unpack .../225-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 288s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 288s Selecting previously unselected package r-cran-shiny. 288s Preparing to unpack .../226-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 288s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 288s Selecting previously unselected package r-cran-rmarkdown. 288s Preparing to unpack .../227-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 288s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 288s Selecting previously unselected package r-cran-bookdown. 288s Preparing to unpack .../228-r-cran-bookdown_0.42+dfsg-1_all.deb ... 288s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 288s Selecting previously unselected package r-cran-biocmanager. 288s Preparing to unpack .../229-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 288s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 288s Selecting previously unselected package tex-common. 288s Preparing to unpack .../230-tex-common_6.19_all.deb ... 288s Unpacking tex-common (6.19) ... 288s Selecting previously unselected package t1utils. 288s Preparing to unpack .../231-t1utils_1.41-4build3_amd64.deb ... 288s Unpacking t1utils (1.41-4build3) ... 288s Selecting previously unselected package texlive-binaries. 288s Preparing to unpack .../232-texlive-binaries_2024.20240313.70630+ds-6_amd64.deb ... 288s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ... 288s Selecting previously unselected package texlive-base. 288s Preparing to unpack .../233-texlive-base_2024.20250114-1_all.deb ... 288s Unpacking texlive-base (2024.20250114-1) ... 290s Selecting previously unselected package texlive-latex-base. 290s Preparing to unpack .../234-texlive-latex-base_2024.20250114-1_all.deb ... 290s Unpacking texlive-latex-base (2024.20250114-1) ... 290s Selecting previously unselected package texlive-bibtex-extra. 290s Preparing to unpack .../235-texlive-bibtex-extra_2024.20250114-1_all.deb ... 290s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 292s Selecting previously unselected package r-bioc-biocversion. 292s Preparing to unpack .../236-r-bioc-biocversion_3.20.0-2_all.deb ... 292s Unpacking r-bioc-biocversion (3.20.0-2) ... 292s Selecting previously unselected package r-bioc-biocstyle. 292s Preparing to unpack .../237-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 292s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 292s Selecting previously unselected package r-cran-hms. 292s Preparing to unpack .../238-r-cran-hms_1.1.3-1_all.deb ... 292s Unpacking r-cran-hms (1.1.3-1) ... 292s Selecting previously unselected package r-cran-prettyunits. 292s Preparing to unpack .../239-r-cran-prettyunits_1.2.0-1_all.deb ... 292s Unpacking r-cran-prettyunits (1.2.0-1) ... 293s Selecting previously unselected package r-cran-progress. 293s Preparing to unpack .../240-r-cran-progress_1.2.3-1_all.deb ... 293s Unpacking r-cran-progress (1.2.3-1) ... 293s Selecting previously unselected package r-cran-httr2. 293s Preparing to unpack .../241-r-cran-httr2_1.1.1-1_all.deb ... 293s Unpacking r-cran-httr2 (1.1.1-1) ... 293s Selecting previously unselected package r-cran-xml2. 293s Preparing to unpack .../242-r-cran-xml2_1.3.7-1_amd64.deb ... 293s Unpacking r-cran-xml2 (1.3.7-1) ... 293s Selecting previously unselected package r-bioc-biomart. 293s Preparing to unpack .../243-r-bioc-biomart_2.62.1+dfsg-1_all.deb ... 293s Unpacking r-bioc-biomart (2.62.1+dfsg-1) ... 293s Selecting previously unselected package r-cran-lattice. 293s Preparing to unpack .../244-r-cran-lattice_0.22-6-1_amd64.deb ... 293s Unpacking r-cran-lattice (0.22-6-1) ... 293s Selecting previously unselected package r-cran-matrix. 293s Preparing to unpack .../245-r-cran-matrix_1.7-3-1_amd64.deb ... 293s Unpacking r-cran-matrix (1.7-3-1) ... 293s Selecting previously unselected package r-cran-matrixstats. 293s Preparing to unpack .../246-r-cran-matrixstats_1.5.0-1_amd64.deb ... 293s Unpacking r-cran-matrixstats (1.5.0-1) ... 293s Selecting previously unselected package r-bioc-matrixgenerics. 293s Preparing to unpack .../247-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 293s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 293s Selecting previously unselected package r-cran-abind. 293s Preparing to unpack .../248-r-cran-abind_1.4-8-1_all.deb ... 293s Unpacking r-cran-abind (1.4-8-1) ... 293s Selecting previously unselected package r-bioc-s4arrays. 293s Preparing to unpack .../249-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 293s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 293s Selecting previously unselected package r-bioc-sparsearray. 293s Preparing to unpack .../250-r-bioc-sparsearray_1.6.2+dfsg-1_amd64.deb ... 293s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 293s Selecting previously unselected package r-bioc-delayedarray. 293s Preparing to unpack .../251-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 293s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 293s Selecting previously unselected package r-cran-survival. 293s Preparing to unpack .../252-r-cran-survival_3.8-3-1_amd64.deb ... 293s Unpacking r-cran-survival (3.8-3-1) ... 293s Selecting previously unselected package r-bioc-genefilter. 293s Preparing to unpack .../253-r-bioc-genefilter_1.88.0-2_amd64.deb ... 293s Unpacking r-bioc-genefilter (1.88.0-2) ... 293s Selecting previously unselected package r-bioc-genomicranges. 294s Preparing to unpack .../254-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 294s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 294s Selecting previously unselected package r-cran-statmod. 294s Preparing to unpack .../255-r-cran-statmod_1.5.0-1_amd64.deb ... 294s Unpacking r-cran-statmod (1.5.0-1) ... 294s Selecting previously unselected package r-bioc-limma. 294s Preparing to unpack .../256-r-bioc-limma_3.62.2+dfsg-1_amd64.deb ... 294s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 294s Selecting previously unselected package r-bioc-summarizedexperiment. 294s Preparing to unpack .../257-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 294s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 294s Selecting previously unselected package r-cran-codetools. 294s Preparing to unpack .../258-r-cran-codetools_0.2-20-1_all.deb ... 294s Unpacking r-cran-codetools (0.2-20-1) ... 294s Selecting previously unselected package r-cran-iterators. 294s Preparing to unpack .../259-r-cran-iterators_1.0.14-1_all.deb ... 294s Unpacking r-cran-iterators (1.0.14-1) ... 294s Selecting previously unselected package r-cran-foreach. 294s Preparing to unpack .../260-r-cran-foreach_1.5.2-1_all.deb ... 294s Unpacking r-cran-foreach (1.5.2-1) ... 294s Selecting previously unselected package r-cran-ff. 294s Preparing to unpack .../261-r-cran-ff_4.5.2+ds-1_amd64.deb ... 294s Unpacking r-cran-ff (4.5.2+ds-1) ... 294s Selecting previously unselected package r-bioc-oligoclasses. 294s Preparing to unpack .../262-r-bioc-oligoclasses_1.68.0-2_all.deb ... 294s Unpacking r-bioc-oligoclasses (1.68.0-2) ... 294s Selecting previously unselected package r-bioc-preprocesscore. 294s Preparing to unpack .../263-r-bioc-preprocesscore_1.68.0+ds-2_amd64.deb ... 294s Unpacking r-bioc-preprocesscore (1.68.0+ds-2) ... 294s Selecting previously unselected package r-bioc-oligo. 294s Preparing to unpack .../264-r-bioc-oligo_1.70.0+ds-2_amd64.deb ... 294s Unpacking r-bioc-oligo (1.70.0+ds-2) ... 294s Selecting previously unselected package r-cran-bitops. 294s Preparing to unpack .../265-r-cran-bitops_1.0-9-1_amd64.deb ... 294s Unpacking r-cran-bitops (1.0-9-1) ... 294s Selecting previously unselected package r-cran-rcolorbrewer. 294s Preparing to unpack .../266-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 294s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 294s Selecting previously unselected package r-cran-rcurl. 294s Preparing to unpack .../267-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 294s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 294s Selecting previously unselected package r-cran-runit. 294s Preparing to unpack .../268-r-cran-runit_0.4.33-1_all.deb ... 294s Unpacking r-cran-runit (0.4.33-1) ... 294s Setting up libjs-json (0~20221030+~1.0.8-1) ... 294s Setting up javascript-common (12) ... 294s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 294s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 294s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 294s 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... 301s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 301s Setting up r-cran-bookdown (0.42+dfsg-1) ... 301s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 301s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 301s Setting up r-bioc-annotationdbi (1.68.0-2) ... 301s Setting up r-bioc-annotate (1.84.0+dfsg-2) ... 301s Setting up r-bioc-biomart (2.62.1+dfsg-1) ... 301s Setting up r-bioc-genefilter (1.88.0-2) ... 301s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 301s Setting up r-bioc-oligoclasses (1.68.0-2) ... 301s Setting up r-bioc-oligo (1.70.0+ds-2) ... 301s Processing triggers for man-db (2.13.0-1) ... 304s Processing triggers for install-info (7.1.1-1) ... 304s Processing triggers for libc-bin (2.41-1ubuntu2) ... 304s Processing triggers for tex-common (6.19) ... 305s Running updmap-sys. This may take some time... done. 305s Running mktexlsr /var/lib/texmf ... done. 305s Building format(s) --all. 343s This may take some time... done. 345s autopkgtest [22:05:22]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 345s autopkgtest [22:05:22]: test pkg-r-autopkgtest: [----------------------- 345s Test: Try to load the R library oligo 345s 345s R version 4.4.3 (2025-02-28) -- "Trophy Case" 345s Copyright (C) 2025 The R Foundation for Statistical Computing 345s Platform: x86_64-pc-linux-gnu 345s 345s R is free software and comes with ABSOLUTELY NO WARRANTY. 345s You are welcome to redistribute it under certain conditions. 345s Type 'license()' or 'licence()' for distribution details. 345s 345s R is a collaborative project with many contributors. 345s Type 'contributors()' for more information and 345s 'citation()' on how to cite R or R packages in publications. 345s 345s Type 'demo()' for some demos, 'help()' for on-line help, or 345s 'help.start()' for an HTML browser interface to help. 345s Type 'q()' to quit R. 345s 345s > library('oligo') 345s Loading required package: BiocGenerics 345s 345s Attaching package: ‘BiocGenerics’ 345s 345s The following objects are masked from ‘package:stats’: 345s 345s IQR, mad, sd, var, xtabs 345s 345s The following objects are masked from ‘package:base’: 345s 345s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 345s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 345s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 345s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 345s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 345s table, tapply, union, unique, unsplit, which.max, which.min 345s 345s Loading required package: oligoClasses 353s Welcome to oligoClasses version 1.68.0 353s Loading required package: Biobase 353s Welcome to Bioconductor 353s 353s Vignettes contain introductory material; view with 353s 'browseVignettes()'. To cite Bioconductor, see 353s 'citation("Biobase")', and for packages 'citation("pkgname")'. 353s 353s Loading required package: Biostrings 353s Loading required package: S4Vectors 353s Loading required package: stats4 353s 353s Attaching package: ‘S4Vectors’ 353s 353s The following object is masked from ‘package:utils’: 353s 353s findMatches 353s 353s The following objects are masked from ‘package:base’: 353s 353s expand.grid, I, unname 353s 353s Loading required package: IRanges 353s Loading required package: XVector 353s Loading required package: GenomeInfoDb 353s 353s Attaching package: ‘Biostrings’ 353s 353s The following object is masked from ‘package:base’: 353s 353s strsplit 353s 354s ================================================================================ 354s Welcome to oligo version 1.70.0 354s ================================================================================ 354s > 354s > 354s Other tests are currently unsupported! 354s They will be progressively added. 354s autopkgtest [22:05:31]: test pkg-r-autopkgtest: -----------------------] 355s autopkgtest [22:05:32]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 355s pkg-r-autopkgtest PASS 355s autopkgtest [22:05:32]: @@@@@@@@@@@@@@@@@@@@ summary 355s pkg-r-autopkgtest PASS 360s nova [W] Skipping flock for amd64 360s Creating nova instance adt-plucky-amd64-r-bioc-oligo-20250315-215936-juju-7f2275-prod-proposed-migration-environment-2-35adab51-0a4a-4d68-b27e-7e0a58121cf6 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 360s nova [W] Timed out waiting for bc399558-cac6-4ba8-93d0-86cf35189143 to get deleted.