0s autopkgtest [21:59:33]: starting date and time: 2025-03-15 21:59:33+0000
0s autopkgtest [21:59:33]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
0s autopkgtest [21:59:33]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.xljzvmg0/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-metapod --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-4.secgroup --name adt-plucky-amd64-r-bioc-metapod-20250315-215933-juju-7f2275-prod-proposed-migration-environment-2-8f7ca452-1ab3-4630-a4ae-19d253059414 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
51s autopkgtest [22:00:23]: testbed dpkg architecture: amd64
51s autopkgtest [22:00:24]: testbed apt version: 2.9.31ubuntu1
51s autopkgtest [22:00:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup
51s autopkgtest [22:00:24]: testbed release detected to be: None
52s autopkgtest [22:00:25]: updating testbed package index (apt update)
52s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
53s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
53s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
53s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
53s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB]
53s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB]
53s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB]
53s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB]
53s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB]
53s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B]
53s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B]
53s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB]
53s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB]
53s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB]
53s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B]
53s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB]
53s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B]
53s Fetched 1265 kB in 1s (1477 kB/s)
55s Reading package lists...
55s Reading package lists...
56s Building dependency tree...
56s Reading state information...
56s Calculating upgrade...
56s Calculating upgrade...
57s The following package was automatically installed and is no longer required:
57s libnl-genl-3-200
57s Use 'sudo apt autoremove' to remove it.
57s The following NEW packages will be installed:
57s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10
57s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic
57s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic
57s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids
57s The following packages will be upgraded:
57s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu
57s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base
57s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools
57s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0
57s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1
57s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0
57s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1
57s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64
57s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6
57s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200
57s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib
57s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2
57s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0
57s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2
57s linux-firmware linux-generic linux-headers-generic linux-headers-virtual
57s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common
57s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term
57s parted pci.ids pciutils pinentry-curses python-apt-common python3
57s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi
57s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal
57s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13
57s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd
57s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd
57s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail
57s xz-utils
57s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded.
57s Need to get 829 MB of archives.
57s After this operation, 325 MB of additional disk space will be used.
57s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB]
57s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB]
57s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB]
58s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB]
58s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB]
58s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB]
58s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB]
58s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB]
58s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB]
58s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB]
58s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB]
58s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB]
58s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB]
58s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB]
58s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB]
58s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB]
58s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB]
58s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB]
58s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB]
58s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB]
58s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB]
58s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB]
59s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB]
59s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB]
59s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB]
59s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB]
59s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B]
59s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB]
59s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB]
59s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB]
59s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB]
59s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB]
59s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB]
59s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB]
59s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB]
59s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB]
59s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB]
59s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB]
59s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB]
59s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB]
59s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB]
59s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB]
59s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB]
59s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB]
59s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB]
59s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB]
59s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB]
59s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB]
59s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB]
59s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB]
59s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B]
59s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB]
59s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB]
59s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB]
59s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB]
59s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB]
59s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB]
59s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B]
59s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB]
59s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB]
59s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB]
59s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB]
59s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB]
59s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB]
59s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB]
59s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB]
59s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB]
59s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB]
59s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB]
59s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB]
59s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB]
59s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB]
60s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB]
60s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB]
60s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB]
60s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB]
60s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB]
60s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB]
60s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB]
60s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB]
60s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB]
60s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB]
60s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB]
60s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB]
60s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB]
60s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB]
60s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB]
60s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB]
60s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB]
60s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB]
60s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB]
60s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB]
60s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B]
60s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB]
60s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB]
60s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB]
60s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB]
60s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
60s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB]
60s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB]
60s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB]
60s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB]
60s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB]
60s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB]
61s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB]
61s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB]
61s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB]
61s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB]
61s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB]
85s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B]
85s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB]
85s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB]
85s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB]
85s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB]
85s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB]
85s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB]
85s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB]
87s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB]
87s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB]
97s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B]
97s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB]
97s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B]
97s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB]
97s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B]
97s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB]
98s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB]
98s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB]
98s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB]
98s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB]
98s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B]
98s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB]
98s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB]
98s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB]
98s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB]
98s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB]
98s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB]
98s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B]
98s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB]
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111s Unpacking dosfstools (4.2-1.2) over (4.2-1.1build1) ...
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111s Unpacking parted (3.6-5) over (3.6-4build1) ...
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111s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64'
111s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64'
111s Unpacking libparted2t64:amd64 (3.6-5) over (3.6-4build1) ...
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112s Preparing to unpack .../39-hwdata_0.393-3_all.deb ...
112s Unpacking hwdata (0.393-3) over (0.392-1) ...
112s Selecting previously unselected package pnp.ids.
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113s Preparing to unpack .../47-curl_8.12.1-3ubuntu1_amd64.deb ...
113s Unpacking curl (8.12.1-3ubuntu1) over (8.12.1-2ubuntu1) ...
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114s Preparing to unpack .../54-htop_3.4.0-2_amd64.deb ...
114s Unpacking htop (3.4.0-2) over (3.3.0-5) ...
114s Preparing to unpack .../55-linux-firmware_20250310.git9e1370d3-0ubuntu1_amd64.deb ...
114s Unpacking linux-firmware (20250310.git9e1370d3-0ubuntu1) over (20250204.git0fd450ee-0ubuntu1) ...
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117s Selecting previously unselected package libdebuginfod1t64:amd64.
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117s Unpacking libjemalloc2:amd64 (5.3.0-3) over (5.3.0-2build1) ...
117s Selecting previously unselected package linux-modules-6.14.0-10-generic.
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124s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ...
124s Setting up media-types (13.0.0) ...
124s Installing new version of config file /etc/mime.types ...
124s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ...
124s Setting up ubuntu-kernel-accessories (1.549) ...
124s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ...
124s Setting up pci.ids (0.0~2025.03.09-1) ...
124s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ...
124s Setting up apt-utils (2.9.33) ...
124s Setting up libdebuginfod-common (0.192-4) ...
124s Setting up exfatprogs (1.2.8-1) ...
124s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ...
124s Setting up bpftool (7.6.0+6.14.0-10.10) ...
124s Setting up libestr0:amd64 (0.1.11-2) ...
124s Setting up libbrotli1:amd64 (1.1.0-2build4) ...
124s Setting up libsqlite3-0:amd64 (3.46.1-2) ...
124s Setting up dosfstools (4.2-1.2) ...
124s Setting up rsyslog (8.2412.0-2ubuntu2) ...
124s info: The user `syslog' is already a member of `adm'.
126s Setting up binutils-common:amd64 (2.44-3ubuntu1) ...
126s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ...
126s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ...
126s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ...
126s Setting up systemd (257.3-1ubuntu3) ...
126s [0;1;39m/usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring.[0m
126s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'.
126s [0;1;39m/usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring.[0m
127s Setting up libparted2t64:amd64 (3.6-5) ...
127s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64'
127s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64'
127s Setting up linux-headers-generic (6.14.0-10.10) ...
127s Setting up libjemalloc2:amd64 (5.3.0-3) ...
127s Setting up locales (2.41-1ubuntu1) ...
127s Installing new version of config file /etc/locale.alias ...
127s Generating locales (this might take a while)...
129s en_US.UTF-8... done
129s Generation complete.
129s Setting up libsframe1:amd64 (2.44-3ubuntu1) ...
129s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ...
129s Setting up apparmor (4.1.0~beta5-0ubuntu8) ...
129s Installing new version of config file /etc/apparmor.d/fusermount3 ...
129s Installing new version of config file /etc/apparmor.d/lsusb ...
129s Installing new version of config file /etc/apparmor.d/openvpn ...
130s Reloading AppArmor profiles
132s Setting up libftdi1-2:amd64 (1.5-8build1) ...
132s Setting up libglib2.0-data (2.84.0-1) ...
132s Setting up systemd-cryptsetup (257.3-1ubuntu3) ...
132s Setting up libncurses6:amd64 (6.5+20250216-2) ...
132s Setting up strace (6.13+ds-1ubuntu1) ...
132s Setting up xz-utils (5.6.4-1) ...
132s Setting up systemd-timesyncd (257.3-1ubuntu3) ...
132s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it.
133s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ...
133s Setting up udev (257.3-1ubuntu3) ...
133s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ...
136s Setting up libncursesw6:amd64 (6.5+20250216-2) ...
136s Setting up libpci3:amd64 (1:3.13.0-2) ...
136s Setting up whiptail (0.52.24-4ubuntu2) ...
136s Setting up python-apt-common (2.9.9build1) ...
136s Setting up pnp.ids (0.393-3) ...
136s Setting up libnl-3-200:amd64 (3.7.0-1) ...
136s Setting up python3.13-minimal (3.13.2-2) ...
137s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ...
137s Setting up libbinutils:amd64 (2.44-3ubuntu1) ...
137s Setting up libc-dev-bin (2.41-1ubuntu1) ...
137s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ...
137s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ...
137s Setting up rsync (3.4.1+ds1-3) ...
137s rsync.service is a disabled or a static unit not running, not starting it.
137s Setting up python3.13-gdbm (3.13.2-2) ...
137s Setting up libpython3-stdlib:amd64 (3.13.2-2) ...
137s Setting up systemd-resolved (257.3-1ubuntu3) ...
138s Setting up initramfs-tools-bin (0.146ubuntu1) ...
138s Setting up ncurses-term (6.5+20250216-2) ...
138s Setting up libctf0:amd64 (2.44-3ubuntu1) ...
138s Setting up libpython3.13:amd64 (3.13.2-2) ...
138s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
138s Setting up libdebuginfod1t64:amd64 (0.192-4) ...
138s Setting up systemd-sysv (257.3-1ubuntu3) ...
138s Setting up linux-headers-virtual (6.14.0-10.10) ...
138s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ...
138s Setting up python3.13 (3.13.2-2) ...
139s Setting up htop (3.4.0-2) ...
139s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ...
142s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic
142s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic
142s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic
142s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic
142s Setting up parted (3.6-5) ...
142s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ...
142s Setting up python3 (3.13.2-2) ...
142s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ...
142s Setting up python3-markupsafe (2.1.5-1build4) ...
142s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ...
145s Setting up libnl-route-3-200:amd64 (3.7.0-1) ...
145s Setting up hwdata (0.393-3) ...
145s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
145s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ...
145s No schema files found: doing nothing.
145s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ...
145s Setting up linux-perf (6.14.0-10.10) ...
145s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ...
145s Setting up pciutils (1:3.13.0-2) ...
145s Setting up python3-rpds-py (0.21.0-2ubuntu2) ...
145s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ...
145s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ...
145s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ...
146s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ...
146s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ...
146s Setting up curl (8.12.1-3ubuntu1) ...
146s Setting up linux-image-virtual (6.14.0-10.10) ...
146s Setting up initramfs-tools-core (0.146ubuntu1) ...
146s Setting up linux-tools-common (6.14.0-10.10) ...
146s Setting up python3-systemd (235-1build6) ...
146s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ...
146s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ...
146s Setting up linux-image-generic (6.14.0-10.10) ...
146s Setting up python3-dbus (1.3.2-5build5) ...
146s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ...
146s Setting up initramfs-tools (0.146ubuntu1) ...
146s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ...
146s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ...
146s update-initramfs: deferring update (trigger activated)
146s Setting up linux-generic (6.14.0-10.10) ...
146s Setting up ubuntu-minimal (1.549) ...
146s Setting up python3-apt (2.9.9build1) ...
146s Setting up python3-bcrypt (4.2.0-2.1build1) ...
146s Setting up python3-yaml (6.0.2-1build2) ...
146s Setting up libfwupd3:amd64 (2.0.6-4) ...
146s Setting up python3-lazr.uri (1.0.6-6) ...
147s Setting up binutils (2.44-3ubuntu1) ...
147s Setting up ubuntu-standard (1.549) ...
147s Setting up cloud-init-base (25.1-0ubuntu3) ...
148s Setting up linux-virtual (6.14.0-10.10) ...
148s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ...
148s Setting up python3-gi (3.50.0-4build1) ...
148s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ...
148s Setting up fwupd (2.0.6-4) ...
149s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
149s fwupd.service is a disabled or a static unit not running, not starting it.
149s Setting up cloud-init (25.1-0ubuntu3) ...
149s Processing triggers for man-db (2.13.0-1) ...
151s Processing triggers for dbus (1.16.2-1ubuntu1) ...
151s Processing triggers for shared-mime-info (2.4-5) ...
151s Warning: program compiled against libxml 212 using older 209
151s Processing triggers for libc-bin (2.41-1ubuntu1) ...
152s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ...
152s /etc/kernel/postinst.d/initramfs-tools:
152s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic
152s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
163s /etc/kernel/postinst.d/zz-update-grub:
163s Sourcing file `/etc/default/grub'
163s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
163s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
163s Generating grub configuration file ...
163s Found linux image: /boot/vmlinuz-6.14.0-10-generic
163s Found initrd image: /boot/initrd.img-6.14.0-10-generic
163s Found linux image: /boot/vmlinuz-6.12.0-16-generic
163s Found initrd image: /boot/initrd.img-6.12.0-16-generic
163s Found linux image: /boot/vmlinuz-6.11.0-8-generic
163s Found initrd image: /boot/initrd.img-6.11.0-8-generic
163s Warning: os-prober will not be executed to detect other bootable partitions.
163s Systems on them will not be added to the GRUB boot configuration.
163s Check GRUB_DISABLE_OS_PROBER documentation entry.
163s Adding boot menu entry for UEFI Firmware Settings ...
163s done
164s Processing triggers for initramfs-tools (0.146ubuntu1) ...
164s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic
164s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
176s Reading package lists...
176s Building dependency tree...
176s Reading state information...
176s Solving dependencies...
176s The following packages will be REMOVED:
176s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib*
176s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
176s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic*
176s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic*
176s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic*
176s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8*
176s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16*
176s linux-tools-6.12.0-16-generic*
177s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded.
177s After this operation, 545 MB disk space will be freed.
177s (Reading database ...
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(Reading database ... 148643 files and directories currently installed.)
177s Removing libnl-genl-3-200:amd64 (3.7.0-1) ...
177s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
177s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
177s Removing libpython3.12t64:amd64 (3.12.9-1) ...
177s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ...
177s Removing libnsl2:amd64 (1.3.0-3build3) ...
177s Removing libpython3.12-minimal:amd64 (3.12.9-1) ...
177s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
177s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
179s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ...
180s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ...
182s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ...
182s /etc/kernel/postrm.d/initramfs-tools:
182s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic
183s /etc/kernel/postrm.d/zz-update-grub:
183s Sourcing file `/etc/default/grub'
183s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
183s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
183s Generating grub configuration file ...
183s Found linux image: /boot/vmlinuz-6.14.0-10-generic
183s Found initrd image: /boot/initrd.img-6.14.0-10-generic
183s Found linux image: /boot/vmlinuz-6.12.0-16-generic
183s Found initrd image: /boot/initrd.img-6.12.0-16-generic
183s Warning: os-prober will not be executed to detect other bootable partitions.
183s Systems on them will not be added to the GRUB boot configuration.
183s Check GRUB_DISABLE_OS_PROBER documentation entry.
183s Adding boot menu entry for UEFI Firmware Settings ...
183s done
183s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ...
183s W: Removing the running kernel
183s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic
183s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic
183s /etc/kernel/postrm.d/initramfs-tools:
183s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic
183s /etc/kernel/postrm.d/zz-update-grub:
183s Sourcing file `/etc/default/grub'
183s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
183s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
183s Generating grub configuration file ...
184s Found linux image: /boot/vmlinuz-6.14.0-10-generic
184s Found initrd image: /boot/initrd.img-6.14.0-10-generic
184s Warning: os-prober will not be executed to detect other bootable partitions.
184s Systems on them will not be added to the GRUB boot configuration.
184s Check GRUB_DISABLE_OS_PROBER documentation entry.
184s Adding boot menu entry for UEFI Firmware Settings ...
184s done
184s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
184s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ...
186s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ...
186s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ...
186s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ...
186s Processing triggers for libc-bin (2.41-1ubuntu1) ...
186s (Reading database ...
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186s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ...
186s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ...
186s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ...
186s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ...
186s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed
186s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
186s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ...
186s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty
186s autopkgtest [22:02:39]: upgrading testbed (apt dist-upgrade and autopurge)
187s Reading package lists...
187s Building dependency tree...
187s Reading state information...
187s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
187s Starting 2 pkgProblemResolver with broken count: 0
187s Done
188s Entering ResolveByKeep
188s
188s Calculating upgrade...
188s The following packages will be upgraded:
188s libc-bin libc-dev-bin libc6 libc6-dev locales
188s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
188s Need to get 10.5 MB of archives.
188s After this operation, 1024 B of additional disk space will be used.
188s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB]
189s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB]
189s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB]
189s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB]
189s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB]
190s Preconfiguring packages ...
190s Fetched 10.5 MB in 1s (8315 kB/s)
190s (Reading database ...
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(Reading database ... 76968 files and directories currently installed.)
190s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ...
190s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
190s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ...
190s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
190s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ...
190s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
190s Setting up libc6:amd64 (2.41-1ubuntu2) ...
191s (Reading database ...
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191s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ...
191s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
191s Setting up libc-bin (2.41-1ubuntu2) ...
191s (Reading database ...
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191s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
191s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
191s Setting up locales (2.41-1ubuntu2) ...
192s Generating locales (this might take a while)...
193s en_US.UTF-8... done
193s Generation complete.
193s Setting up libc-dev-bin (2.41-1ubuntu2) ...
193s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ...
193s Processing triggers for man-db (2.13.0-1) ...
194s Processing triggers for systemd (257.3-1ubuntu3) ...
195s Reading package lists...
195s Building dependency tree...
195s Reading state information...
195s Starting pkgProblemResolver with broken count: 0
195s Starting 2 pkgProblemResolver with broken count: 0
195s Done
196s Solving dependencies...
196s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
196s autopkgtest [22:02:49]: rebooting testbed after setup commands that affected boot
220s autopkgtest [22:03:13]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025
222s autopkgtest [22:03:15]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-metapod
224s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-metapod 1.14.0+dfsg-2 (dsc) [2128 B]
224s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-metapod 1.14.0+dfsg-2 (tar) [28.4 kB]
224s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-metapod 1.14.0+dfsg-2 (diff) [3424 B]
224s gpgv: Signature made Sat Jan 11 17:00:12 2025 UTC
224s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
224s gpgv: issuer "crusoe@debian.org"
224s gpgv: Can't check signature: No public key
224s dpkg-source: warning: cannot verify inline signature for ./r-bioc-metapod_1.14.0+dfsg-2.dsc: no acceptable signature found
224s autopkgtest [22:03:17]: testing package r-bioc-metapod version 1.14.0+dfsg-2
225s autopkgtest [22:03:18]: build not needed
226s autopkgtest [22:03:19]: test pkg-r-autopkgtest: preparing testbed
226s Reading package lists...
227s Building dependency tree...
227s Reading state information...
227s Starting pkgProblemResolver with broken count: 0
227s Starting 2 pkgProblemResolver with broken count: 0
227s Done
228s The following NEW packages will be installed:
228s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu
228s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
228s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
228s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14
228s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14
228s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools
228s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3
228s libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev libdeflate0
228s libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 libgomp1
228s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl
228s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev
228s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3
228s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables
228s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr
228s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js
228s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker
228s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4
228s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev
228s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
228s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
228s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0
228s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6
228s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev
228s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0
228s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64
228s littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc
228s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
228s r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biocversion r-bioc-metapod
228s r-cran-base64enc r-cran-biocmanager r-cran-bookdown r-cran-brio r-cran-bslib
228s r-cran-cachem r-cran-callr r-cran-cli r-cran-commonmark r-cran-crayon
228s r-cran-desc r-cran-diffobj r-cran-digest r-cran-evaluate r-cran-fastmap
228s r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools
228s r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later
228s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise r-cran-mime
228s r-cran-pkgbuild r-cran-pkgkitten r-cran-pkgload r-cran-praise
228s r-cran-processx r-cran-promises r-cran-ps r-cran-r6 r-cran-rappdirs
228s r-cran-rcpp r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-sass
228s r-cran-shiny r-cran-sourcetools r-cran-testthat r-cran-tinytex r-cran-waldo
228s r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml t1utils tex-common
228s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip
228s x11-common xdg-utils zip zlib1g-dev
228s 0 upgraded, 207 newly installed, 0 to remove and 0 not upgraded.
228s Need to get 333 MB of archives.
228s After this operation, 1049 MB of additional disk space will be used.
228s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB]
228s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB]
228s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB]
229s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B]
229s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B]
229s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB]
229s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB]
229s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB]
229s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB]
229s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB]
229s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB]
229s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB]
229s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB]
229s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB]
229s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB]
229s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB]
230s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB]
230s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB]
230s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B]
230s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B]
230s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB]
231s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB]
231s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB]
231s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B]
231s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B]
231s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
231s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB]
231s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
231s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
231s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB]
231s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB]
231s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB]
231s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
231s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
231s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB]
231s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
231s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB]
231s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB]
231s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB]
232s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB]
232s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B]
232s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B]
232s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB]
232s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B]
232s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB]
232s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB]
232s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB]
232s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB]
232s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB]
232s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB]
232s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
232s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
232s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
232s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
232s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB]
232s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB]
232s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB]
232s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB]
232s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
232s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB]
232s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
232s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB]
232s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB]
232s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB]
232s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB]
232s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
232s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
232s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
232s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
232s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
232s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
232s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB]
232s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
232s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
232s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
232s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
232s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
232s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
232s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
232s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
232s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
232s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
232s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
232s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB]
232s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB]
232s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB]
233s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB]
233s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB]
233s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB]
233s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB]
233s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB]
233s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB]
233s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB]
233s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB]
233s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB]
233s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB]
233s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB]
233s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB]
233s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB]
233s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B]
233s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB]
233s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB]
233s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB]
233s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB]
233s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB]
233s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB]
233s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB]
233s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB]
233s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB]
233s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB]
233s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB]
233s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB]
233s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB]
233s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
233s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB]
233s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB]
233s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
233s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
233s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB]
234s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB]
234s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB]
234s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB]
234s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB]
234s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB]
234s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB]
234s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB]
234s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB]
234s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
234s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB]
236s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB]
236s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B]
236s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB]
236s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
236s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB]
236s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB]
236s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB]
238s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB]
238s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB]
238s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB]
238s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB]
238s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B]
238s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
238s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
238s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB]
238s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB]
238s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB]
238s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB]
238s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB]
238s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB]
238s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB]
238s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
238s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB]
238s Get:153 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
238s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB]
238s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB]
238s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
238s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB]
238s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB]
239s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
239s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
239s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB]
239s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB]
239s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB]
239s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB]
239s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB]
239s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB]
239s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB]
239s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB]
239s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB]
239s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB]
239s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
239s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB]
239s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB]
239s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
239s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB]
239s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB]
239s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB]
239s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB]
239s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB]
239s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
239s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB]
239s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
239s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
240s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB]
240s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB]
240s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
240s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB]
240s Get:188 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB]
240s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB]
240s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB]
242s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB]
242s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB]
248s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB]
248s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB]
248s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-metapod amd64 1.14.0+dfsg-2 [233 kB]
248s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB]
248s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB]
248s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB]
248s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB]
248s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB]
248s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB]
248s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB]
248s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB]
248s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB]
248s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB]
248s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-2 [150 kB]
248s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB]
249s Preconfiguring packages ...
249s Fetched 333 MB in 21s (15.7 MB/s)
249s Selecting previously unselected package libisl23:amd64.
250s (Reading database ...
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250s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ...
250s Unpacking libisl23:amd64 (0.27-1) ...
250s Selecting previously unselected package libmpc3:amd64.
250s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ...
250s Unpacking libmpc3:amd64 (1.3.1-1build2) ...
250s Selecting previously unselected package cpp-14-x86-64-linux-gnu.
250s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ...
250s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
250s Selecting previously unselected package cpp-14.
250s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ...
250s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
250s Selecting previously unselected package cpp-x86-64-linux-gnu.
250s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
250s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
250s Selecting previously unselected package cpp.
250s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ...
250s Unpacking cpp (4:14.2.0-1ubuntu1) ...
250s Selecting previously unselected package libcc1-0:amd64.
250s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ...
250s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ...
250s Selecting previously unselected package libgomp1:amd64.
250s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ...
250s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ...
250s Selecting previously unselected package libitm1:amd64.
250s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ...
250s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ...
250s Selecting previously unselected package libasan8:amd64.
250s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ...
250s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ...
250s Selecting previously unselected package liblsan0:amd64.
250s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ...
250s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ...
250s Selecting previously unselected package libtsan2:amd64.
250s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ...
250s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ...
250s Selecting previously unselected package libubsan1:amd64.
250s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ...
251s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ...
251s Selecting previously unselected package libhwasan0:amd64.
251s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ...
251s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ...
251s Selecting previously unselected package libquadmath0:amd64.
251s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ...
251s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ...
251s Selecting previously unselected package libgcc-14-dev:amd64.
251s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ...
251s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ...
251s Selecting previously unselected package gcc-14-x86-64-linux-gnu.
251s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ...
251s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
251s Selecting previously unselected package gcc-14.
251s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ...
251s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
251s Selecting previously unselected package gcc-x86-64-linux-gnu.
251s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
251s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
251s Selecting previously unselected package gcc.
251s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ...
251s Unpacking gcc (4:14.2.0-1ubuntu1) ...
251s Selecting previously unselected package libstdc++-14-dev:amd64.
251s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ...
251s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ...
252s Selecting previously unselected package g++-14-x86-64-linux-gnu.
252s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ...
252s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
252s Selecting previously unselected package g++-14.
252s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ...
252s Unpacking g++-14 (14.2.0-17ubuntu3) ...
252s Selecting previously unselected package g++-x86-64-linux-gnu.
252s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
252s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
252s Selecting previously unselected package g++.
252s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ...
252s Unpacking g++ (4:14.2.0-1ubuntu1) ...
252s Selecting previously unselected package build-essential.
252s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ...
252s Unpacking build-essential (12.10ubuntu1) ...
252s Selecting previously unselected package dctrl-tools.
252s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ...
252s Unpacking dctrl-tools (2.24-3build3) ...
252s Selecting previously unselected package fonts-dejavu-mono.
252s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ...
252s Unpacking fonts-dejavu-mono (2.37-8) ...
252s Selecting previously unselected package fonts-dejavu-core.
252s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ...
252s Unpacking fonts-dejavu-core (2.37-8) ...
252s Selecting previously unselected package fontconfig-config.
252s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ...
252s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
252s Selecting previously unselected package libfontconfig1:amd64.
252s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ...
252s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ...
252s Selecting previously unselected package fontconfig.
252s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ...
252s Unpacking fontconfig (2.15.0-2ubuntu1) ...
252s Selecting previously unselected package fonts-font-awesome.
252s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
252s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
252s Selecting previously unselected package fonts-glyphicons-halflings.
252s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
252s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
252s Selecting previously unselected package fonts-lmodern.
252s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ...
252s Unpacking fonts-lmodern (2.005-1) ...
253s Selecting previously unselected package fonts-mathjax.
253s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
253s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
253s Selecting previously unselected package libgfortran5:amd64.
253s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ...
253s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ...
253s Selecting previously unselected package libgfortran-14-dev:amd64.
253s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ...
253s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ...
253s Selecting previously unselected package gfortran-14-x86-64-linux-gnu.
253s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ...
253s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
253s Selecting previously unselected package gfortran-14.
253s Preparing to unpack .../039-gfortran-14_14.2.0-17ubuntu3_amd64.deb ...
253s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
253s Selecting previously unselected package gfortran-x86-64-linux-gnu.
253s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
253s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
253s Selecting previously unselected package gfortran.
253s Preparing to unpack .../041-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ...
253s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
253s Selecting previously unselected package icu-devtools.
253s Preparing to unpack .../042-icu-devtools_76.1-1ubuntu2_amd64.deb ...
253s Unpacking icu-devtools (76.1-1ubuntu2) ...
253s Selecting previously unselected package javascript-common.
253s Preparing to unpack .../043-javascript-common_12_all.deb ...
253s Unpacking javascript-common (12) ...
253s Selecting previously unselected package libio-string-perl.
253s Preparing to unpack .../044-libio-string-perl_1.08-4_all.deb ...
253s Unpacking libio-string-perl (1.08-4) ...
253s Selecting previously unselected package liblatex-tounicode-perl.
253s Preparing to unpack .../045-liblatex-tounicode-perl_0.55-1_all.deb ...
253s Unpacking liblatex-tounicode-perl (0.55-1) ...
253s Selecting previously unselected package libbibtex-parser-perl.
253s Preparing to unpack .../046-libbibtex-parser-perl_1.05+dfsg-1_all.deb ...
253s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ...
253s Selecting previously unselected package libblas3:amd64.
253s Preparing to unpack .../047-libblas3_3.12.1-2_amd64.deb ...
253s Unpacking libblas3:amd64 (3.12.1-2) ...
253s Selecting previously unselected package libblas-dev:amd64.
253s Preparing to unpack .../048-libblas-dev_3.12.1-2_amd64.deb ...
253s Unpacking libblas-dev:amd64 (3.12.1-2) ...
253s Selecting previously unselected package libbz2-dev:amd64.
253s Preparing to unpack .../049-libbz2-dev_1.0.8-6_amd64.deb ...
253s Unpacking libbz2-dev:amd64 (1.0.8-6) ...
253s Selecting previously unselected package libpixman-1-0:amd64.
253s Preparing to unpack .../050-libpixman-1-0_0.44.0-3_amd64.deb ...
253s Unpacking libpixman-1-0:amd64 (0.44.0-3) ...
253s Selecting previously unselected package libxcb-render0:amd64.
253s Preparing to unpack .../051-libxcb-render0_1.17.0-2_amd64.deb ...
253s Unpacking libxcb-render0:amd64 (1.17.0-2) ...
253s Selecting previously unselected package libxcb-shm0:amd64.
253s Preparing to unpack .../052-libxcb-shm0_1.17.0-2_amd64.deb ...
253s Unpacking libxcb-shm0:amd64 (1.17.0-2) ...
254s Selecting previously unselected package libxrender1:amd64.
254s Preparing to unpack .../053-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ...
254s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ...
254s Selecting previously unselected package libcairo2:amd64.
254s Preparing to unpack .../054-libcairo2_1.18.2-2_amd64.deb ...
254s Unpacking libcairo2:amd64 (1.18.2-2) ...
254s Selecting previously unselected package libdatrie1:amd64.
254s Preparing to unpack .../055-libdatrie1_0.2.13-3build1_amd64.deb ...
254s Unpacking libdatrie1:amd64 (0.2.13-3build1) ...
254s Selecting previously unselected package libdeflate0:amd64.
254s Preparing to unpack .../056-libdeflate0_1.23-1_amd64.deb ...
254s Unpacking libdeflate0:amd64 (1.23-1) ...
254s Selecting previously unselected package libdeflate-dev:amd64.
254s Preparing to unpack .../057-libdeflate-dev_1.23-1_amd64.deb ...
254s Unpacking libdeflate-dev:amd64 (1.23-1) ...
254s Selecting previously unselected package libgraphite2-3:amd64.
254s Preparing to unpack .../058-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ...
254s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
254s Selecting previously unselected package libharfbuzz0b:amd64.
254s Preparing to unpack .../059-libharfbuzz0b_10.2.0-1_amd64.deb ...
254s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ...
254s Selecting previously unselected package x11-common.
254s Preparing to unpack .../060-x11-common_1%3a7.7+23ubuntu3_all.deb ...
254s Unpacking x11-common (1:7.7+23ubuntu3) ...
254s Selecting previously unselected package libice6:amd64.
254s Preparing to unpack .../061-libice6_2%3a1.1.1-1_amd64.deb ...
254s Unpacking libice6:amd64 (2:1.1.1-1) ...
254s Selecting previously unselected package libicu-dev:amd64.
254s Preparing to unpack .../062-libicu-dev_76.1-1ubuntu2_amd64.deb ...
254s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ...
254s Selecting previously unselected package libjpeg-turbo8:amd64.
254s Preparing to unpack .../063-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ...
254s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
254s Selecting previously unselected package libjpeg-turbo8-dev:amd64.
254s Preparing to unpack .../064-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ...
254s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ...
254s Selecting previously unselected package libjpeg8:amd64.
254s Preparing to unpack .../065-libjpeg8_8c-2ubuntu11_amd64.deb ...
254s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
254s Selecting previously unselected package libjpeg8-dev:amd64.
254s Preparing to unpack .../066-libjpeg8-dev_8c-2ubuntu11_amd64.deb ...
254s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ...
254s Selecting previously unselected package libjpeg-dev:amd64.
254s Preparing to unpack .../067-libjpeg-dev_8c-2ubuntu11_amd64.deb ...
254s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ...
254s Selecting previously unselected package libjs-bootstrap.
254s Preparing to unpack .../068-libjs-bootstrap_3.4.1+dfsg-3_all.deb ...
254s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ...
254s Selecting previously unselected package libjs-popper.js.
254s Preparing to unpack .../069-libjs-popper.js_1.16.1+ds-6_all.deb ...
254s Unpacking libjs-popper.js (1.16.1+ds-6) ...
254s Selecting previously unselected package libjs-bootstrap4.
254s Preparing to unpack .../070-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ...
254s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ...
255s Selecting previously unselected package libjs-d3.
255s Preparing to unpack .../071-libjs-d3_3.5.17-4_all.deb ...
255s Unpacking libjs-d3 (3.5.17-4) ...
255s Selecting previously unselected package libjs-es5-shim.
255s Preparing to unpack .../072-libjs-es5-shim_4.6.7-2_all.deb ...
255s Unpacking libjs-es5-shim (4.6.7-2) ...
255s Selecting previously unselected package libjs-highlight.js.
255s Preparing to unpack .../073-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ...
255s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ...
255s Selecting previously unselected package libjs-jquery.
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270s Setting up r-base-core (4.4.3-1) ...
270s Creating config file /etc/R/Renviron with new version
270s Setting up r-cran-crayon (1.5.3-1) ...
270s Setting up r-cran-sourcetools (0.1.7-1-1) ...
270s Setting up r-cran-ps (1.9.0-1) ...
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270s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
270s Setting up r-cran-commonmark (1.9.2-2) ...
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270s Setting up r-cran-r6 (2.6.1-1) ...
270s Setting up r-cran-pkgkitten (0.2.4-1) ...
270s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
270s Setting up texlive-base (2024.20250114-1) ...
271s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
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271s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
271s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
272s Setting up r-cran-magrittr (2.0.3-1) ...
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272s Setting up r-cran-littler (0.3.20-2) ...
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272s Setting up r-cran-rcpp (1.0.14-1) ...
272s Setting up r-cran-brio (1.1.5-1) ...
272s Setting up r-cran-diffobj (0.3.5-1) ...
272s Setting up r-bioc-biocgenerics (0.52.0-2) ...
272s Setting up r-cran-rlang (1.1.5-1) ...
272s Setting up littler (0.3.20-2) ...
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272s Setting up r-cran-withr (3.0.2+dfsg-1) ...
272s Setting up r-cran-processx (3.8.6-1) ...
272s Setting up r-cran-mime (0.12-2) ...
272s Setting up r-cran-praise (1.0.0-4build1) ...
272s Setting up r-cran-base64enc (0.1-3-3) ...
272s Setting up r-cran-digest (0.6.37-1) ...
272s Setting up r-cran-yaml (2.3.10-1) ...
272s Setting up r-cran-evaluate (1.0.3-1) ...
272s Setting up r-cran-highr (0.11+dfsg-1) ...
272s Setting up r-cran-glue (1.8.0-1) ...
272s Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
272s Setting up r-cran-xtable (1:1.8-4-2) ...
272s Setting up r-cran-cli (3.6.4-1) ...
272s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
272s Setting up r-bioc-biocversion (3.20.0-2) ...
272s Setting up r-cran-rprojroot (2.0.4-2) ...
272s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ...
272s Setting up gcc (4:14.2.0-1ubuntu1) ...
272s Setting up r-cran-fastmap (1.2.0-1) ...
272s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
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272s Setting up r-cran-waldo (0.6.1-2) ...
272s Setting up r-cran-later (1.4.1+dfsg-1) ...
272s Setting up r-cran-htmltools (0.5.8.1-1) ...
272s Setting up r-cran-tinytex (0.56-1) ...
272s Setting up r-cran-knitr (1.49+dfsg-1) ...
272s Setting up g++ (4:14.2.0-1ubuntu1) ...
272s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
272s Setting up r-cran-cachem (1.1.0-1) ...
272s Setting up r-cran-sass (0.4.9+dfsg-1) ...
272s Setting up build-essential (12.10ubuntu1) ...
272s Setting up r-bioc-metapod (1.14.0+dfsg-2) ...
272s Setting up r-cran-callr (3.7.6-1) ...
272s Setting up r-cran-desc (1.4.3-1) ...
272s Setting up r-cran-fontawesome (0.5.3-1) ...
272s Setting up gfortran (4:14.2.0-1ubuntu1) ...
272s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
272s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
272s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
272s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
272s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
272s Setting up texlive-bibtex-extra (2024.20250114-1) ...
272s Setting up r-cran-memoise (2.0.1-1) ...
272s Setting up r-cran-promises (1.3.2+dfsg-1) ...
272s Setting up r-cran-pkgbuild (1.4.6-1) ...
272s Setting up r-cran-pkgload (1.4.0-1) ...
272s Setting up r-base-dev (4.4.3-1) ...
272s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
272s Setting up r-cran-testthat (3.2.3-1) ...
272s Setting up r-cran-bslib (0.8.0+dfsg-1) ...
272s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
272s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
272s Setting up r-cran-rmarkdown (2.29+dfsg-1) ...
272s Setting up r-cran-bookdown (0.42+dfsg-1) ...
272s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ...
272s Processing triggers for libc-bin (2.41-1ubuntu2) ...
272s Processing triggers for man-db (2.13.0-1) ...
274s Processing triggers for install-info (7.1.1-1) ...
274s Processing triggers for tex-common (6.19) ...
274s Running updmap-sys. This may take some time... done.
274s Running mktexlsr /var/lib/texmf ... done.
275s Building format(s) --all.
304s This may take some time... done.
305s autopkgtest [22:04:38]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
305s autopkgtest [22:04:38]: test pkg-r-autopkgtest: [-----------------------
305s Test: Try to load the R library metapod
305s
305s R version 4.4.3 (2025-02-28) -- "Trophy Case"
305s Copyright (C) 2025 The R Foundation for Statistical Computing
305s Platform: x86_64-pc-linux-gnu
305s
305s R is free software and comes with ABSOLUTELY NO WARRANTY.
305s You are welcome to redistribute it under certain conditions.
305s Type 'license()' or 'licence()' for distribution details.
305s
305s R is a collaborative project with many contributors.
305s Type 'contributors()' for more information and
305s 'citation()' on how to cite R or R packages in publications.
305s
305s Type 'demo()' for some demos, 'help()' for on-line help, or
305s 'help.start()' for an HTML browser interface to help.
305s Type 'q()' to quit R.
305s
305s > library('metapod')
305s >
305s >
305s Other tests are currently unsupported!
305s They will be progressively added.
306s autopkgtest [22:04:39]: test pkg-r-autopkgtest: -----------------------]
306s autopkgtest [22:04:39]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - -
306s pkg-r-autopkgtest PASS
306s autopkgtest [22:04:39]: @@@@@@@@@@@@@@@@@@@@ summary
306s pkg-r-autopkgtest PASS
324s nova [W] Skipping flock for amd64
324s Creating nova instance adt-plucky-amd64-r-bioc-metapod-20250315-215933-juju-7f2275-prod-proposed-migration-environment-2-8f7ca452-1ab3-4630-a4ae-19d253059414 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)...
324s nova [W] Timed out waiting for 8cac7d9c-2dcb-4625-8498-45cc6f96bcb0 to get deleted.