0s autopkgtest [21:59:32]: starting date and time: 2025-03-15 21:59:32+0000 0s autopkgtest [21:59:32]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [21:59:32]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.672i0ay6/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-makecdfenv --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@lcy02-9.secgroup --name adt-plucky-amd64-r-bioc-makecdfenv-20250315-215931-juju-7f2275-prod-proposed-migration-environment-15-582e2719-156d-44d7-af7e-9d3c8e3e4fc2 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 51s autopkgtest [22:00:23]: testbed dpkg architecture: amd64 51s autopkgtest [22:00:23]: testbed apt version: 2.9.31ubuntu1 51s autopkgtest [22:00:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 51s autopkgtest [22:00:23]: testbed release detected to be: None 51s autopkgtest [22:00:23]: updating testbed package index (apt update) 51s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 51s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 51s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 51s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 51s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 51s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 51s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 51s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 51s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 51s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 51s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 51s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 51s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 51s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 51s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 51s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 51s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 52s Fetched 1265 kB in 0s (5037 kB/s) 53s Reading package lists... 53s + lsb_release --codename --short 53s + RELEASE=plucky 53s + cat 53s + [ plucky != trusty ] 53s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 54s Calculating upgrade... 54s Calculating upgrade... 54s The following package was automatically installed and is no longer required: 54s libnl-genl-3-200 54s Use 'sudo apt autoremove' to remove it. 54s The following NEW packages will be installed: 54s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 54s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 54s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 54s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 54s The following packages will be upgraded: 54s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 54s cloud-init cloud-init-base curl dosfstools fwupd gir1.2-girepository-2.0 54s gir1.2-glib-2.0 htop hwdata libapparmor1 libapt-pkg7.0 libaudit-common 54s libaudit1 libbinutils libbrotli1 libcap-ng0 libctf-nobfd0 libctf0 54s libcurl3t64-gnutls libcurl4t64 libestr0 libfwupd3 libgirepository-1.0-1 54s libglib2.0-0t64 libglib2.0-data libgprofng0 libjemalloc2 liblz4-1 liblzma5 54s libmm-glib0 libncurses6 libncursesw6 libnl-3-200 libnl-genl-3-200 54s libnl-route-3-200 libpci3 libpython3-stdlib libpython3.13 54s libpython3.13-minimal libpython3.13-stdlib libselinux1 libsframe1 54s libsqlite3-0 libtinfo6 libxml2 linux-firmware linux-generic 54s linux-headers-generic linux-headers-virtual linux-image-generic 54s linux-image-virtual linux-libc-dev linux-tools-common linux-virtual 54s media-types ncurses-base ncurses-bin ncurses-term pci.ids pciutils 54s pinentry-curses python-apt-common python3 python3-apt python3-cffi-backend 54s python3-dbus python3-gi python3-jinja2 python3-lazr.uri python3-markupsafe 54s python3-minimal python3-systemd python3-yaml python3.13 python3.13-gdbm 54s python3.13-minimal rsync rsyslog strace xz-utils 54s 86 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 54s Need to get 807 MB of archives. 54s After this operation, 326 MB of additional disk space will be used. 54s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 54s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 54s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 55s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 55s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 55s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 55s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 55s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 55s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 55s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 55s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 55s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 55s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 55s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 55s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 55s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 55s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 55s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 55s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 55s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 55s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 55s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 55s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 55s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 55s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 55s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 55s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 55s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 55s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 55s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 55s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 55s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 55s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 55s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 55s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 55s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 55s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 55s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 55s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 55s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 55s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 55s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 55s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 55s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 55s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 55s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 55s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 55s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 55s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 55s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 55s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 55s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 55s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 55s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 55s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 55s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 55s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 55s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 55s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 55s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 55s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 55s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 55s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 55s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 55s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 55s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 55s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 55s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 55s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 55s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 55s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 55s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 55s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 55s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 55s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 55s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 55s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 55s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 60s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 60s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 60s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 61s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 61s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 61s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 61s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 61s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 61s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 61s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 61s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 61s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 61s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 61s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 61s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 61s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 61s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 61s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 61s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 61s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 61s Preconfiguring packages ... 62s Fetched 807 MB in 7s (122 MB/s) 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 62s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ... 62s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ... 62s Setting up ncurses-bin (6.5+20250216-2) ... 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 62s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... 62s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ... 62s Setting up ncurses-base (6.5+20250216-2) ... 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 62s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ... 62s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ... 63s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ... 63s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ... 63s Setting up liblz4-1:amd64 (1.10.0-4) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 63s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ... 63s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ... 63s Setting up liblzma5:amd64 (5.6.4-1) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 63s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 63s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 63s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 63s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 63s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 63s Setting up apt (2.9.33) ... 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 64s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 64s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 64s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 64s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 64s Setting up python3-minimal (3.13.2-2) ... 64s (Reading database ... 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Preparing to unpack .../68-python3-systemd_235-1build6_amd64.deb ... 81s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 81s Preparing to unpack .../69-python3.13-gdbm_3.13.2-2_amd64.deb ... 81s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 81s Preparing to unpack .../70-cloud-init_25.1-0ubuntu3_all.deb ... 81s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 81s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 81s Setting up media-types (13.0.0) ... 81s Installing new version of config file /etc/mime.types ... 81s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 81s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 81s Setting up pci.ids (0.0~2025.03.09-1) ... 81s Setting up apt-utils (2.9.33) ... 81s Setting up libdebuginfod-common (0.192-4) ... 81s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 81s Setting up bpftool (7.6.0+6.14.0-10.10) ... 81s Setting up libestr0:amd64 (0.1.11-2) ... 81s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 81s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 81s Setting up dosfstools (4.2-1.2) ... 81s Setting up rsyslog (8.2412.0-2ubuntu2) ... 81s info: The user `syslog' is already a member of `adm'. 82s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 82s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 82s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 82s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 82s Setting up linux-headers-generic (6.14.0-10.10) ... 82s Setting up libjemalloc2:amd64 (5.3.0-3) ... 82s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 82s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 82s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 82s Installing new version of config file /etc/apparmor.d/openvpn ... 84s Reloading AppArmor profiles 85s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 85s No schema files found: doing nothing. 85s Setting up libglib2.0-data (2.84.0-1) ... 85s Setting up libncurses6:amd64 (6.5+20250216-2) ... 85s Setting up strace (6.13+ds-1ubuntu1) ... 85s Setting up xz-utils (5.6.4-1) ... 85s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 85s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 87s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 87s Setting up libpci3:amd64 (1:3.13.0-2) ... 87s Setting up python-apt-common (2.9.9build1) ... 87s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 87s Setting up pnp.ids (0.393-3) ... 87s Setting up libnl-3-200:amd64 (3.7.0-1) ... 87s Setting up python3.13-minimal (3.13.2-2) ... 88s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 88s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 88s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 88s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 88s Setting up rsync (3.4.1+ds1-3) ... 89s rsync.service is a disabled or a static unit not running, not starting it. 89s Setting up python3.13-gdbm (3.13.2-2) ... 89s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 89s Setting up ncurses-term (6.5+20250216-2) ... 89s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 89s Setting up libpython3.13:amd64 (3.13.2-2) ... 89s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 89s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 89s Setting up linux-headers-virtual (6.14.0-10.10) ... 89s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 89s Setting up python3.13 (3.13.2-2) ... 90s Setting up htop (3.4.0-2) ... 90s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 92s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 92s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 92s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 92s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 92s Setting up libfwupd3:amd64 (2.0.6-4) ... 92s Setting up python3 (3.13.2-2) ... 92s Setting up python3-markupsafe (2.1.5-1build4) ... 92s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 94s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 94s Setting up hwdata (0.393-3) ... 94s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 94s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 94s Setting up linux-perf (6.14.0-10.10) ... 94s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 95s Setting up python3-gi (3.50.0-4build1) ... 95s Setting up pciutils (1:3.13.0-2) ... 95s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 95s Setting up curl (8.12.1-3ubuntu1) ... 95s Setting up linux-image-virtual (6.14.0-10.10) ... 95s Setting up linux-tools-common (6.14.0-10.10) ... 95s Setting up fwupd (2.0.6-4) ... 95s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 95s fwupd.service is a disabled or a static unit not running, not starting it. 95s Setting up python3-systemd (235-1build6) ... 95s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 95s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 95s Setting up linux-image-generic (6.14.0-10.10) ... 95s Setting up python3-dbus (1.3.2-5build5) ... 95s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 95s Setting up linux-generic (6.14.0-10.10) ... 95s Setting up python3-apt (2.9.9build1) ... 96s Setting up python3-yaml (6.0.2-1build2) ... 96s Setting up python3-lazr.uri (1.0.6-6) ... 96s Setting up binutils (2.44-3ubuntu1) ... 96s Setting up cloud-init-base (25.1-0ubuntu3) ... 97s Setting up linux-virtual (6.14.0-10.10) ... 97s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 97s Setting up cloud-init (25.1-0ubuntu3) ... 97s Processing triggers for systemd (257.3-1ubuntu3) ... 97s Processing triggers for man-db (2.13.0-1) ... 99s Processing triggers for dbus (1.16.2-1ubuntu1) ... 99s Processing triggers for libc-bin (2.41-1ubuntu1) ... 99s Processing triggers for initramfs-tools (0.146ubuntu1) ... 99s update-initramfs: Generating /boot/initrd.img-6.12.0-16-generic 99s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 110s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 110s /etc/kernel/postinst.d/initramfs-tools: 110s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 110s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 121s /etc/kernel/postinst.d/zz-update-grub: 121s Sourcing file `/etc/default/grub' 121s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 121s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 121s Generating grub configuration file ... 121s Found linux image: /boot/vmlinuz-6.14.0-10-generic 121s Found initrd image: /boot/initrd.img-6.14.0-10-generic 121s Found linux image: /boot/vmlinuz-6.12.0-16-generic 121s Found initrd image: /boot/initrd.img-6.12.0-16-generic 121s Found linux image: /boot/vmlinuz-6.11.0-8-generic 121s Found initrd image: /boot/initrd.img-6.11.0-8-generic 121s Warning: os-prober will not be executed to detect other bootable partitions. 121s Systems on them will not be added to the GRUB boot configuration. 121s Check GRUB_DISABLE_OS_PROBER documentation entry. 121s Adding boot menu entry for UEFI Firmware Settings ... 121s done 121s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 121s + /usr/lib/apt/apt-helper analyze-pattern ?true 121s + uname -r 121s + sed s/\./\\./g 121s + running_kernel_pattern=^linux-.*6\.12\.0-16-generic.* 121s + apt list ?obsolete 121s + tail -n+2 121s + grep -v ^linux-.*6\.12\.0-16-generic.* 121s + cut -d/ -f1 123s + obsolete_pkgs=linux-headers-6.11.0-8-generic 123s linux-headers-6.11.0-8 123s linux-headers-6.12.0-16 123s linux-image-6.11.0-8-generic 123s linux-modules-6.11.0-8-generic 123s linux-tools-6.11.0-8-generic 123s linux-tools-6.11.0-8 123s linux-tools-6.12.0-16 123s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-headers-6.12.0-16 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 linux-tools-6.12.0-16 123s Reading package lists... 123s Building dependency tree... 123s Reading state information... 123s Solving dependencies... 123s The following packages will be REMOVED: 123s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 123s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 123s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 123s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 123s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 123s linux-tools-6.12.0-16-generic* 124s 0 upgraded, 0 newly installed, 15 to remove and 5 not upgraded. 124s After this operation, 371 MB disk space will be freed. 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 124s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 124s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 124s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 124s Removing libpython3.12t64:amd64 (3.12.9-1) ... 124s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 124s Removing libnsl2:amd64 (1.3.0-3build3) ... 124s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 124s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 125s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 127s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 127s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 129s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 129s /etc/kernel/postrm.d/initramfs-tools: 129s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 130s /etc/kernel/postrm.d/zz-update-grub: 130s Sourcing file `/etc/default/grub' 130s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 130s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 130s Generating grub configuration file ... 130s Found linux image: /boot/vmlinuz-6.14.0-10-generic 130s Found initrd image: /boot/initrd.img-6.14.0-10-generic 130s Found linux image: /boot/vmlinuz-6.12.0-16-generic 130s Found initrd image: /boot/initrd.img-6.12.0-16-generic 130s Warning: os-prober will not be executed to detect other bootable partitions. 130s Systems on them will not be added to the GRUB boot configuration. 130s Check GRUB_DISABLE_OS_PROBER documentation entry. 130s Adding boot menu entry for UEFI Firmware Settings ... 130s done 130s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 130s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 130s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 130s Processing triggers for libc-bin (2.41-1ubuntu1) ... 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84830 files and directories currently installed.) 131s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 131s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 131s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 131s + grep -q trusty /etc/lsb-release 131s + [ ! -d /usr/share/doc/unattended-upgrades ] 131s + [ ! -d /usr/share/doc/lxd ] 131s + [ ! -d /usr/share/doc/lxd-client ] 131s + [ ! -d /usr/share/doc/snapd ] 131s + type iptables 131s + cat 131s + chmod 755 /etc/rc.local 131s + . /etc/rc.local 131s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 131s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 131s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 131s + uname -m 131s + [ x86_64 = ppc64le ] 131s + [ -d /run/systemd/system ] 131s + systemd-detect-virt --quiet --vm 131s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 131s + cat 131s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 131s + echo COMPRESS=lz4 131s autopkgtest [22:01:43]: upgrading testbed (apt dist-upgrade and autopurge) 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 132s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 132s Starting 2 pkgProblemResolver with broken count: 0 132s Done 132s Entering ResolveByKeep 133s 133s Calculating upgrade... 133s The following packages will be upgraded: 133s libc-bin libc-dev-bin libc6 libc6-dev locales 133s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s Need to get 10.5 MB of archives. 133s After this operation, 1024 B of additional disk space will be used. 133s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 133s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 133s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 133s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 133s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 133s Preconfiguring packages ... 133s Fetched 10.5 MB in 0s (56.0 MB/s) 134s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 134s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 134s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 134s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 134s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 134s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 134s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 134s Setting up libc6:amd64 (2.41-1ubuntu2) ... 134s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 134s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 134s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 134s Setting up libc-bin (2.41-1ubuntu2) ... 134s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 134s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 134s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 135s Setting up locales (2.41-1ubuntu2) ... 135s Generating locales (this might take a while)... 137s en_US.UTF-8... done 137s Generation complete. 137s Setting up libc-dev-bin (2.41-1ubuntu2) ... 137s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 137s Processing triggers for man-db (2.13.0-1) ... 137s Processing triggers for systemd (257.3-1ubuntu3) ... 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 139s Starting pkgProblemResolver with broken count: 0 139s Starting 2 pkgProblemResolver with broken count: 0 139s Done 139s Solving dependencies... 139s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s autopkgtest [22:01:51]: rebooting testbed after setup commands that affected boot 143s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 155s autopkgtest [22:02:07]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 156s autopkgtest [22:02:08]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-makecdfenv 157s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-makecdfenv 1.82.0-2 (dsc) [2186 B] 157s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-makecdfenv 1.82.0-2 (tar) [3418 kB] 157s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-makecdfenv 1.82.0-2 (diff) [12.9 kB] 157s gpgv: Signature made Sun Jan 12 11:47:11 2025 UTC 157s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 157s gpgv: issuer "crusoe@debian.org" 157s gpgv: Can't check signature: No public key 157s dpkg-source: warning: cannot verify inline signature for ./r-bioc-makecdfenv_1.82.0-2.dsc: no acceptable signature found 157s autopkgtest [22:02:09]: testing package r-bioc-makecdfenv version 1.82.0-2 157s autopkgtest [22:02:09]: build not needed 159s autopkgtest [22:02:11]: test pkg-r-autopkgtest: preparing testbed 159s Reading package lists... 159s Building dependency tree... 159s Reading state information... 159s Starting pkgProblemResolver with broken count: 0 159s Starting 2 pkgProblemResolver with broken count: 0 159s Done 160s The following NEW packages will be installed: 160s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 160s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 160s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 160s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 160s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8 160s libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev 160s libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 160s libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 160s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 160s libjpeg8-dev liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 160s libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 160s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 160s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 160s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data 160s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 160s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 160s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-affy 160s r-bioc-affyio r-bioc-biobase r-bioc-biocgenerics r-bioc-makecdfenv 160s r-bioc-preprocesscore r-bioc-zlibbioc r-cran-biocmanager unzip x11-common 160s xdg-utils zip zlib1g-dev 160s 0 upgraded, 107 newly installed, 0 to remove and 0 not upgraded. 160s Need to get 153 MB of archives. 160s After this operation, 461 MB of additional disk space will be used. 160s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 160s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 160s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 161s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 161s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 161s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 161s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 161s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 161s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 161s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 161s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 161s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 161s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 161s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 161s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 161s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 161s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 162s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 162s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 162s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 162s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 162s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 162s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 162s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 162s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 162s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 162s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 162s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 162s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 162s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 162s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 162s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 162s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 162s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 162s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 162s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 162s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 162s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 162s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 162s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 162s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 162s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 162s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 162s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 162s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 162s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 162s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 162s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 162s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 162s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 162s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 162s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 162s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 162s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 162s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 162s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 162s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 162s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 162s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 162s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 162s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 162s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 162s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 162s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 162s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 162s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 162s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 162s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 162s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 162s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 162s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 162s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 162s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 162s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 162s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 162s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 162s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 162s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 162s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 162s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 162s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 162s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 162s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 162s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 162s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 162s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 162s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 162s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 162s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 162s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 162s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 162s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 162s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 163s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 163s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 163s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 163s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 163s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 163s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 163s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 163s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 163s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 163s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-affyio amd64 1.76.0-2 [97.6 kB] 163s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 163s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-preprocesscore amd64 1.68.0+ds-2 [174 kB] 163s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-affy amd64 1.84.0-2 [2021 kB] 163s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-makecdfenv amd64 1.82.0-2 [3547 kB] 164s Preconfiguring packages ... 164s Fetched 153 MB in 3s (47.8 MB/s) 164s Selecting previously unselected package libisl23:amd64. 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 164s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 164s Unpacking libisl23:amd64 (0.27-1) ... 164s Selecting previously unselected package libmpc3:amd64. 164s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 164s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 164s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 164s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 164s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 164s Selecting previously unselected package cpp-14. 164s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 164s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 164s Selecting previously unselected package cpp-x86-64-linux-gnu. 164s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 164s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 164s Selecting previously unselected package cpp. 164s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 164s Unpacking cpp (4:14.2.0-1ubuntu1) ... 164s Selecting previously unselected package libcc1-0:amd64. 164s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 164s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 164s Selecting previously unselected package libgomp1:amd64. 164s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 164s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 164s Selecting previously unselected package libitm1:amd64. 164s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 164s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 164s Selecting previously unselected package libasan8:amd64. 164s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 164s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 164s Selecting previously unselected package liblsan0:amd64. 164s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 164s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 164s Selecting previously unselected package libtsan2:amd64. 164s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 164s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 165s Selecting previously unselected package libubsan1:amd64. 165s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 165s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 165s Selecting previously unselected package libhwasan0:amd64. 165s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 165s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 165s Selecting previously unselected package libquadmath0:amd64. 165s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 165s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 165s Selecting previously unselected package libgcc-14-dev:amd64. 165s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 165s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 165s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 165s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 165s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 165s Selecting previously unselected package gcc-14. 165s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 165s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 165s Selecting previously unselected package gcc-x86-64-linux-gnu. 165s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 165s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 165s Selecting previously unselected package gcc. 165s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 165s Unpacking gcc (4:14.2.0-1ubuntu1) ... 165s Selecting previously unselected package libstdc++-14-dev:amd64. 165s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 165s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 165s Selecting previously unselected package g++-14-x86-64-linux-gnu. 165s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 165s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 166s Selecting previously unselected package g++-14. 166s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ... 166s Unpacking g++-14 (14.2.0-17ubuntu3) ... 166s Selecting previously unselected package g++-x86-64-linux-gnu. 166s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 166s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 166s Selecting previously unselected package g++. 166s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 166s Unpacking g++ (4:14.2.0-1ubuntu1) ... 166s Selecting previously unselected package build-essential. 166s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 166s Unpacking build-essential (12.10ubuntu1) ... 166s Selecting previously unselected package dctrl-tools. 166s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 166s Unpacking dctrl-tools (2.24-3build3) ... 166s Selecting previously unselected package fonts-dejavu-mono. 166s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 166s Unpacking fonts-dejavu-mono (2.37-8) ... 166s Selecting previously unselected package fonts-dejavu-core. 166s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 166s Unpacking fonts-dejavu-core (2.37-8) ... 166s Selecting previously unselected package fontconfig-config. 166s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 166s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 166s Selecting previously unselected package libfontconfig1:amd64. 166s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 166s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 166s Selecting previously unselected package fontconfig. 166s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 166s Unpacking fontconfig (2.15.0-2ubuntu1) ... 166s Selecting previously unselected package libgfortran5:amd64. 166s Preparing to unpack .../032-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 166s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 166s Selecting previously unselected package libgfortran-14-dev:amd64. 166s Preparing to unpack .../033-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 166s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 166s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 166s Preparing to unpack .../034-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 166s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 166s Selecting previously unselected package gfortran-14. 166s Preparing to unpack .../035-gfortran-14_14.2.0-17ubuntu3_amd64.deb ... 166s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 166s Selecting previously unselected package gfortran-x86-64-linux-gnu. 166s Preparing to unpack .../036-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 166s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 166s Selecting previously unselected package gfortran. 166s Preparing to unpack .../037-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 166s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 166s Selecting previously unselected package icu-devtools. 166s Preparing to unpack .../038-icu-devtools_76.1-1ubuntu2_amd64.deb ... 166s Unpacking icu-devtools (76.1-1ubuntu2) ... 167s Selecting previously unselected package libblas3:amd64. 167s Preparing to unpack .../039-libblas3_3.12.1-2_amd64.deb ... 167s Unpacking libblas3:amd64 (3.12.1-2) ... 167s Selecting previously unselected package libblas-dev:amd64. 167s Preparing to unpack .../040-libblas-dev_3.12.1-2_amd64.deb ... 167s Unpacking libblas-dev:amd64 (3.12.1-2) ... 167s Selecting previously unselected package libbz2-dev:amd64. 167s Preparing to unpack .../041-libbz2-dev_1.0.8-6_amd64.deb ... 167s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 167s Selecting previously unselected package libpixman-1-0:amd64. 167s Preparing to unpack .../042-libpixman-1-0_0.44.0-3_amd64.deb ... 167s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 167s Selecting previously unselected package libxcb-render0:amd64. 167s Preparing to unpack .../043-libxcb-render0_1.17.0-2_amd64.deb ... 167s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 167s Selecting previously unselected package libxcb-shm0:amd64. 167s Preparing to unpack .../044-libxcb-shm0_1.17.0-2_amd64.deb ... 167s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 167s Selecting previously unselected package libxrender1:amd64. 167s Preparing to unpack .../045-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 167s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 167s Selecting previously unselected package libcairo2:amd64. 167s Preparing to unpack .../046-libcairo2_1.18.2-2_amd64.deb ... 167s Unpacking libcairo2:amd64 (1.18.2-2) ... 167s Selecting previously unselected package libdatrie1:amd64. 167s Preparing to unpack .../047-libdatrie1_0.2.13-3build1_amd64.deb ... 167s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 167s Selecting previously unselected package libdeflate0:amd64. 167s Preparing to unpack .../048-libdeflate0_1.23-1_amd64.deb ... 167s Unpacking libdeflate0:amd64 (1.23-1) ... 167s Selecting previously unselected package libdeflate-dev:amd64. 167s Preparing to unpack .../049-libdeflate-dev_1.23-1_amd64.deb ... 167s Unpacking libdeflate-dev:amd64 (1.23-1) ... 167s Selecting previously unselected package libgraphite2-3:amd64. 167s Preparing to unpack .../050-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 167s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 167s Selecting previously unselected package libharfbuzz0b:amd64. 167s Preparing to unpack .../051-libharfbuzz0b_10.2.0-1_amd64.deb ... 167s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 167s Selecting previously unselected package x11-common. 167s Preparing to unpack .../052-x11-common_1%3a7.7+23ubuntu3_all.deb ... 167s Unpacking x11-common (1:7.7+23ubuntu3) ... 167s Selecting previously unselected package libice6:amd64. 167s Preparing to unpack .../053-libice6_2%3a1.1.1-1_amd64.deb ... 167s Unpacking libice6:amd64 (2:1.1.1-1) ... 167s Selecting previously unselected package libicu-dev:amd64. 167s Preparing to unpack .../054-libicu-dev_76.1-1ubuntu2_amd64.deb ... 167s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 167s Selecting previously unselected package libjpeg-turbo8:amd64. 167s Preparing to unpack .../055-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 167s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 167s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 167s Preparing to unpack .../056-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ... 167s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 167s Selecting previously unselected package libjpeg8:amd64. 167s Preparing to unpack .../057-libjpeg8_8c-2ubuntu11_amd64.deb ... 167s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 167s Selecting previously unselected package libjpeg8-dev:amd64. 167s Preparing to unpack .../058-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 167s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 167s Selecting previously unselected package libjpeg-dev:amd64. 167s Preparing to unpack .../059-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 167s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 167s Selecting previously unselected package liblapack3:amd64. 167s Preparing to unpack .../060-liblapack3_3.12.1-2_amd64.deb ... 167s Unpacking liblapack3:amd64 (3.12.1-2) ... 167s Selecting previously unselected package liblapack-dev:amd64. 167s Preparing to unpack .../061-liblapack-dev_3.12.1-2_amd64.deb ... 167s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 168s Selecting previously unselected package liblerc4:amd64. 168s Preparing to unpack .../062-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 168s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 168s Selecting previously unselected package libncurses-dev:amd64. 168s Preparing to unpack .../063-libncurses-dev_6.5+20250216-2_amd64.deb ... 168s Unpacking libncurses-dev:amd64 (6.5+20250216-2) ... 168s Selecting previously unselected package libthai-data. 168s Preparing to unpack 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168s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 168s Selecting previously unselected package libpaper-utils. 168s Preparing to unpack .../070-libpaper-utils_2.2.5-0.3_amd64.deb ... 168s Unpacking libpaper-utils (2.2.5-0.3) ... 168s Selecting previously unselected package libpcre2-16-0:amd64. 168s Preparing to unpack .../071-libpcre2-16-0_10.45-1_amd64.deb ... 168s Unpacking libpcre2-16-0:amd64 (10.45-1) ... 168s Selecting previously unselected package libpcre2-32-0:amd64. 168s Preparing to unpack .../072-libpcre2-32-0_10.45-1_amd64.deb ... 168s Unpacking libpcre2-32-0:amd64 (10.45-1) ... 168s Selecting previously unselected package libpcre2-posix3:amd64. 168s Preparing to unpack .../073-libpcre2-posix3_10.45-1_amd64.deb ... 168s Unpacking libpcre2-posix3:amd64 (10.45-1) ... 168s Selecting previously unselected package libpcre2-dev:amd64. 168s Preparing to unpack .../074-libpcre2-dev_10.45-1_amd64.deb ... 168s Unpacking libpcre2-dev:amd64 (10.45-1) ... 168s Selecting previously unselected package libpkgconf3:amd64. 168s Preparing to unpack .../075-libpkgconf3_1.8.1-4_amd64.deb ... 168s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 168s Selecting previously unselected package zlib1g-dev:amd64. 168s Preparing to unpack .../076-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 168s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 168s Selecting previously unselected package libpng-dev:amd64. 168s Preparing to unpack .../077-libpng-dev_1.6.47-1_amd64.deb ... 168s Unpacking libpng-dev:amd64 (1.6.47-1) ... 168s Selecting previously unselected package libreadline-dev:amd64. 168s Preparing to unpack .../078-libreadline-dev_8.2-6_amd64.deb ... 168s Unpacking libreadline-dev:amd64 (8.2-6) ... 168s Selecting previously unselected package libsharpyuv0:amd64. 168s Preparing to unpack .../079-libsharpyuv0_1.5.0-0.1_amd64.deb ... 168s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 168s Selecting previously unselected package libsm6:amd64. 168s Preparing to unpack .../080-libsm6_2%3a1.2.4-1_amd64.deb ... 168s Unpacking libsm6:amd64 (2:1.2.4-1) ... 168s Selecting previously unselected package libtcl8.6:amd64. 168s Preparing to unpack .../081-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 168s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 168s Selecting previously unselected package libjbig0:amd64. 168s Preparing to unpack .../082-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 168s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 168s Selecting previously unselected package libwebp7:amd64. 168s Preparing to unpack .../083-libwebp7_1.5.0-0.1_amd64.deb ... 168s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 168s Selecting previously unselected package libtiff6:amd64. 168s Preparing to unpack .../084-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 168s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 168s Selecting previously unselected package libxft2:amd64. 168s Preparing to unpack .../085-libxft2_2.3.6-1build1_amd64.deb ... 168s Unpacking libxft2:amd64 (2.3.6-1build1) ... 168s Selecting previously unselected package libxss1:amd64. 168s Preparing to unpack .../086-libxss1_1%3a1.2.3-1build3_amd64.deb ... 168s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 169s Selecting previously unselected package libtk8.6:amd64. 169s Preparing to unpack .../087-libtk8.6_8.6.16-1_amd64.deb ... 169s Unpacking libtk8.6:amd64 (8.6.16-1) ... 169s Selecting previously unselected package libxt6t64:amd64. 169s Preparing to unpack .../088-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 169s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 169s Selecting previously unselected package zip. 169s Preparing to unpack .../089-zip_3.0-14ubuntu2_amd64.deb ... 169s Unpacking zip (3.0-14ubuntu2) ... 169s Selecting previously unselected package unzip. 169s Preparing to unpack .../090-unzip_6.0-28ubuntu6_amd64.deb ... 169s Unpacking unzip (6.0-28ubuntu6) ... 169s Selecting previously unselected package xdg-utils. 169s Preparing to unpack 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package r-base-dev. 169s Preparing to unpack .../097-r-base-dev_4.4.3-1_all.deb ... 169s Unpacking r-base-dev (4.4.3-1) ... 169s Selecting previously unselected package pkg-r-autopkgtest. 169s Preparing to unpack .../098-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 169s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 169s Selecting previously unselected package r-bioc-biocgenerics. 169s Preparing to unpack .../099-r-bioc-biocgenerics_0.52.0-2_all.deb ... 169s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 169s Selecting previously unselected package r-bioc-biobase. 169s Preparing to unpack .../100-r-bioc-biobase_2.66.0-2_amd64.deb ... 169s Unpacking r-bioc-biobase (2.66.0-2) ... 169s Selecting previously unselected package r-bioc-zlibbioc. 169s Preparing to unpack .../101-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 169s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 169s Selecting previously unselected package r-bioc-affyio. 169s Preparing to unpack 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(1.5.0-0.1) ... 170s Setting up libncurses-dev:amd64 (6.5+20250216-2) ... 170s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 170s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 170s Setting up libdatrie1:amd64 (0.2.13-3build1) ... 170s Setting up libxcb-render0:amd64 (1.17.0-2) ... 170s Setting up unzip (6.0-28ubuntu6) ... 170s Setting up x11-common (1:7.7+23ubuntu3) ... 170s Setting up libdeflate0:amd64 (1.23-1) ... 170s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 170s Setting up libreadline-dev:amd64 (8.2-6) ... 170s Setting up libgomp1:amd64 (15-20250222-0ubuntu1) ... 170s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 170s Setting up libpcre2-16-0:amd64 (10.45-1) ... 170s Setting up zip (3.0-14ubuntu2) ... 170s Setting up libpcre2-32-0:amd64 (10.45-1) ... 170s Setting up libblas3:amd64 (3.12.1-2) ... 170s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 170s Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 170s Setting up libpkgconf3:amd64 (1.8.1-4) ... 170s Setting up libquadmath0:amd64 (15-20250222-0ubuntu1) ... 170s Setting up fonts-dejavu-mono (2.37-8) ... 170s Setting up libmpc3:amd64 (1.3.1-1build2) ... 170s Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... 170s Setting up icu-devtools (76.1-1ubuntu2) ... 170s Setting up fonts-dejavu-core (2.37-8) ... 170s Setting up pkgconf-bin (1.8.1-4) ... 170s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 170s Setting up libgfortran5:amd64 (15-20250222-0ubuntu1) ... 170s Setting up libwebp7:amd64 (1.5.0-0.1) ... 170s Setting up liblzma-dev:amd64 (5.6.4-1) ... 170s Setting up libubsan1:amd64 (15-20250222-0ubuntu1) ... 170s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 170s Setting up libpcre2-posix3:amd64 (10.45-1) ... 170s Setting up libhwasan0:amd64 (15-20250222-0ubuntu1) ... 170s Setting up libasan8:amd64 (15-20250222-0ubuntu1) ... 170s Setting up libharfbuzz0b:amd64 (10.2.0-1) ... 170s Setting up libthai-data (0.1.29-2build1) ... 170s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 170s Setting up libpaper2:amd64 (2.2.5-0.3) ... 170s Setting up libtsan2:amd64 (15-20250222-0ubuntu1) ... 170s Setting up libisl23:amd64 (0.27-1) ... 170s Setting up libdeflate-dev:amd64 (1.23-1) ... 170s Setting up libicu-dev:amd64 (76.1-1ubuntu2) ... 170s Setting up xdg-utils (1.2.1-2ubuntu1) ... 170s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 170s Setting up libcc1-0:amd64 (15-20250222-0ubuntu1) ... 170s Setting up liblsan0:amd64 (15-20250222-0ubuntu1) ... 170s Setting up libblas-dev:amd64 (3.12.1-2) ... 170s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 170s Setting up dctrl-tools (2.24-3build3) ... 170s Setting up libitm1:amd64 (15-20250222-0ubuntu1) ... 170s Setting up libbz2-dev:amd64 (1.0.8-6) ... 170s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 170s Setting up libice6:amd64 (2:1.1.1-1) ... 170s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 170s Setting up liblapack3:amd64 (3.12.1-2) ... 170s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 170s Setting up libpcre2-dev:amd64 (10.45-1) ... 170s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 170s Setting up libpng-dev:amd64 (1.6.47-1) ... 170s Setting up libpaper-utils (2.2.5-0.3) ... 170s Setting up pkgconf:amd64 (1.8.1-4) ... 170s Setting up libthai0:amd64 (0.1.29-2build1) ... 170s Setting up liblapack-dev:amd64 (3.12.1-2) ... 170s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 170s Setting up cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 170s Setting up cpp-14 (14.2.0-17ubuntu3) ... 170s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 170s Setting up libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 170s Setting up libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 170s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 170s Setting up libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 170s Setting up libsm6:amd64 (2:1.2.4-1) ... 170s Setting up cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 170s Setting up libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 170s Setting up fontconfig (2.15.0-2ubuntu1) ... 172s Regenerating fonts cache... done. 172s Setting up libxft2:amd64 (2.3.6-1build1) ... 172s Setting up libtk8.6:amd64 (8.6.16-1) ... 172s Setting up libpango-1.0-0:amd64 (1.56.2-1) ... 172s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 172s Setting up libcairo2:amd64 (1.18.2-2) ... 172s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ... 172s Setting up cpp (4:14.2.0-1ubuntu1) ... 172s Setting up gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 172s Setting up libpangoft2-1.0-0:amd64 (1.56.2-1) ... 172s Setting up libpangocairo-1.0-0:amd64 (1.56.2-1) ... 172s Setting up gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 172s Setting up gcc-14 (14.2.0-17ubuntu3) ... 172s Setting up gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 172s Setting up r-base-core (4.4.3-1) ... 173s Creating config file /etc/R/Renviron with new version 173s Setting up g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 173s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 173s Setting up g++-14 (14.2.0-17ubuntu3) ... 173s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 173s Setting up r-bioc-biocgenerics (0.52.0-2) ... 173s Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 173s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 173s Setting up gcc (4:14.2.0-1ubuntu1) ... 173s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 173s Setting up r-bioc-biobase (2.66.0-2) ... 173s Setting up g++ (4:14.2.0-1ubuntu1) ... 173s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 173s Setting up build-essential (12.10ubuntu1) ... 173s Setting up r-bioc-preprocesscore (1.68.0+ds-2) ... 173s Setting up r-bioc-affyio (1.76.0-2) ... 173s Setting up gfortran (4:14.2.0-1ubuntu1) ... 173s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 173s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 173s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 173s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 173s Setting up r-bioc-affy (1.84.0-2) ... 173s Setting up r-base-dev (4.4.3-1) ... 173s Setting up r-bioc-makecdfenv (1.82.0-2) ... 173s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 173s Processing triggers for libc-bin (2.41-1ubuntu2) ... 173s Processing triggers for man-db (2.13.0-1) ... 174s Processing triggers for install-info (7.1.1-1) ... 175s autopkgtest [22:02:27]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 175s autopkgtest [22:02:27]: test pkg-r-autopkgtest: [----------------------- 175s Test: Try to load the R library makecdfenv 175s 175s R version 4.4.3 (2025-02-28) -- "Trophy Case" 175s Copyright (C) 2025 The R Foundation for Statistical Computing 175s Platform: x86_64-pc-linux-gnu 175s 175s R is free software and comes with ABSOLUTELY NO WARRANTY. 175s You are welcome to redistribute it under certain conditions. 175s Type 'license()' or 'licence()' for distribution details. 175s 175s R is a collaborative project with many contributors. 175s Type 'contributors()' for more information and 175s 'citation()' on how to cite R or R packages in publications. 175s 175s Type 'demo()' for some demos, 'help()' for on-line help, or 175s 'help.start()' for an HTML browser interface to help. 175s Type 'q()' to quit R. 175s 175s > library('makecdfenv') 175s Loading required package: affyio 176s > 176s > 176s Other tests are currently unsupported! 176s They will be progressively added. 176s autopkgtest [22:02:28]: test pkg-r-autopkgtest: -----------------------] 176s autopkgtest [22:02:28]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 176s pkg-r-autopkgtest PASS 176s autopkgtest [22:02:28]: @@@@@@@@@@@@@@@@@@@@ summary 176s pkg-r-autopkgtest PASS 192s nova [W] Skipping flock for amd64 192s Creating nova instance adt-plucky-amd64-r-bioc-makecdfenv-20250315-215931-juju-7f2275-prod-proposed-migration-environment-15-582e2719-156d-44d7-af7e-9d3c8e3e4fc2 from image adt/ubuntu-plucky-amd64-server-20250306.img (UUID 60d877d7-b74c-4f24-920d-f4570db0a338)... 192s nova [W] Timed out waiting for eabe36ff-8c2b-4e92-aae2-e9021aa15588 to get deleted.