0s autopkgtest [20:20:11]: starting date and time: 2025-03-15 20:20:11+0000 0s autopkgtest [20:20:11]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [20:20:11]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.4o4y_kl5/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-limma --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-3.secgroup --name adt-plucky-amd64-r-bioc-limma-20250315-202011-juju-7f2275-prod-proposed-migration-environment-2-f9f61dac-dfba-4a76-a937-021c20f01514 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 41s autopkgtest [20:20:52]: testbed dpkg architecture: amd64 41s autopkgtest [20:20:52]: testbed apt version: 2.9.31ubuntu1 41s autopkgtest [20:20:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup 41s autopkgtest [20:20:52]: testbed release detected to be: None 41s autopkgtest [20:20:52]: updating testbed package index (apt update) 42s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 42s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 42s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 42s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 42s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 42s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 42s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [45.1 kB] 42s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [62.1 kB] 42s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [86.6 kB] 42s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1884 B] 42s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 42s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [166 kB] 42s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [330 kB] 42s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.6 kB] 42s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 42s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 42s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 42s Fetched 1242 kB in 0s (2658 kB/s) 43s Reading package lists... 43s Reading package lists... 44s Building dependency tree... 44s Reading state information... 44s Calculating upgrade... 44s Calculating upgrade... 44s The following package was automatically installed and is no longer required: 44s libnl-genl-3-200 44s Use 'sudo apt autoremove' to remove it. 44s The following NEW packages will be installed: 44s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 44s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 44s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 44s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 44s The following packages will be upgraded: 44s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 44s cloud-init cloud-init-base curl dosfstools fwupd gir1.2-girepository-2.0 44s gir1.2-glib-2.0 htop hwdata libapparmor1 libapt-pkg7.0 libaudit-common 44s libaudit1 libbinutils libbrotli1 libcap-ng0 libctf-nobfd0 libctf0 44s libcurl3t64-gnutls libcurl4t64 libestr0 libfwupd3 libgirepository-1.0-1 44s libglib2.0-0t64 libglib2.0-data libgprofng0 libjemalloc2 liblz4-1 liblzma5 44s libmm-glib0 libncurses6 libncursesw6 libnl-3-200 libnl-genl-3-200 44s libnl-route-3-200 libpci3 libpython3-stdlib libpython3.13 44s libpython3.13-minimal libpython3.13-stdlib libselinux1 libsframe1 44s libsqlite3-0 libtinfo6 libxml2 linux-firmware linux-generic 44s linux-headers-generic linux-headers-virtual linux-image-generic 44s linux-image-virtual linux-libc-dev linux-tools-common linux-virtual 44s media-types ncurses-base ncurses-bin ncurses-term pci.ids pciutils 44s pinentry-curses python-apt-common python3 python3-apt python3-cffi-backend 44s python3-dbus python3-gi python3-jinja2 python3-lazr.uri python3-markupsafe 44s python3-minimal python3-systemd python3-yaml python3.13 python3.13-gdbm 44s python3.13-minimal rsync rsyslog strace xz-utils 44s 86 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 44s Need to get 807 MB of archives. 44s After this operation, 326 MB of additional disk space will be used. 44s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 44s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 44s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 44s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 44s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 44s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 44s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 45s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 45s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 45s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 45s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 45s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 45s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 45s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 45s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 45s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 45s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 45s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 45s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 45s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 45s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 45s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 45s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 45s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 45s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 45s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 45s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 45s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 45s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 45s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 45s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 45s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 45s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 45s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 45s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 45s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 45s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 45s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 45s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 45s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 45s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 45s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 45s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 45s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 45s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 45s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 45s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 45s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 45s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 45s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 45s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 45s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 45s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 45s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 45s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 45s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 45s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 45s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 45s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 45s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 45s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 45s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 45s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 45s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 45s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 45s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 45s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 45s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 45s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 45s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 45s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 45s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 45s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 45s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 45s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 45s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 45s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 45s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 58s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 58s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 59s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 61s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 61s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 61s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 61s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 61s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 61s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 61s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 61s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 61s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 61s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 61s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 61s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 61s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 61s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 61s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 61s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 61s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 61s Preconfiguring packages ... 61s Fetched 807 MB in 17s (48.4 MB/s) 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 62s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ... 62s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ... 62s Setting up ncurses-bin (6.5+20250216-2) ... 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 62s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... 62s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ... 62s Setting up ncurses-base (6.5+20250216-2) ... 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 62s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ... 62s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ... 62s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ... 62s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ... 63s Setting up liblz4-1:amd64 (1.10.0-4) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 63s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ... 63s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ... 63s Setting up liblzma5:amd64 (5.6.4-1) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 63s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 63s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 63s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 63s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 63s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 63s Setting up apt (2.9.33) ... 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 64s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 64s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 64s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 64s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 64s Setting up python3-minimal (3.13.2-2) ... 64s (Reading database ... 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Preparing to unpack .../68-python3-systemd_235-1build6_amd64.deb ... 79s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 79s Preparing to unpack .../69-python3.13-gdbm_3.13.2-2_amd64.deb ... 79s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 79s Preparing to unpack .../70-cloud-init_25.1-0ubuntu3_all.deb ... 79s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 79s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 79s Setting up media-types (13.0.0) ... 79s Installing new version of config file /etc/mime.types ... 79s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 79s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 79s Setting up pci.ids (0.0~2025.03.09-1) ... 79s Setting up apt-utils (2.9.33) ... 79s Setting up libdebuginfod-common (0.192-4) ... 79s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 79s Setting up bpftool (7.6.0+6.14.0-10.10) ... 79s Setting up libestr0:amd64 (0.1.11-2) ... 79s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 79s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 79s Setting up dosfstools (4.2-1.2) ... 79s Setting up rsyslog (8.2412.0-2ubuntu2) ... 80s info: The user `syslog' is already a member of `adm'. 81s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 81s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 81s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 81s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 81s Setting up linux-headers-generic (6.14.0-10.10) ... 81s Setting up libjemalloc2:amd64 (5.3.0-3) ... 81s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 81s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 81s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 81s Installing new version of config file /etc/apparmor.d/openvpn ... 82s Reloading AppArmor profiles 83s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 83s No schema files found: doing nothing. 83s Setting up libglib2.0-data (2.84.0-1) ... 83s Setting up libncurses6:amd64 (6.5+20250216-2) ... 83s Setting up strace (6.13+ds-1ubuntu1) ... 83s Setting up xz-utils (5.6.4-1) ... 83s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 83s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 85s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 85s Setting up libpci3:amd64 (1:3.13.0-2) ... 85s Setting up python-apt-common (2.9.9build1) ... 85s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 85s Setting up pnp.ids (0.393-3) ... 85s Setting up libnl-3-200:amd64 (3.7.0-1) ... 85s Setting up python3.13-minimal (3.13.2-2) ... 86s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 86s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 86s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 86s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 86s Setting up rsync (3.4.1+ds1-3) ... 86s rsync.service is a disabled or a static unit not running, not starting it. 86s Setting up python3.13-gdbm (3.13.2-2) ... 86s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 86s Setting up ncurses-term (6.5+20250216-2) ... 86s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 86s Setting up libpython3.13:amd64 (3.13.2-2) ... 86s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 86s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 86s Setting up linux-headers-virtual (6.14.0-10.10) ... 86s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 86s Setting up python3.13 (3.13.2-2) ... 87s Setting up htop (3.4.0-2) ... 87s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 89s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 89s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 89s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 89s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 89s Setting up libfwupd3:amd64 (2.0.6-4) ... 89s Setting up python3 (3.13.2-2) ... 89s Setting up python3-markupsafe (2.1.5-1build4) ... 90s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 92s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 92s Setting up hwdata (0.393-3) ... 92s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 92s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 92s Setting up linux-perf (6.14.0-10.10) ... 92s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 92s Setting up python3-gi (3.50.0-4build1) ... 92s Setting up pciutils (1:3.13.0-2) ... 92s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 92s Setting up curl (8.12.1-3ubuntu1) ... 92s Setting up linux-image-virtual (6.14.0-10.10) ... 92s Setting up linux-tools-common (6.14.0-10.10) ... 92s Setting up fwupd (2.0.6-4) ... 92s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 92s fwupd.service is a disabled or a static unit not running, not starting it. 93s Setting up python3-systemd (235-1build6) ... 93s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 93s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 93s Setting up linux-image-generic (6.14.0-10.10) ... 93s Setting up python3-dbus (1.3.2-5build5) ... 93s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 93s Setting up linux-generic (6.14.0-10.10) ... 93s Setting up python3-apt (2.9.9build1) ... 93s Setting up python3-yaml (6.0.2-1build2) ... 93s Setting up python3-lazr.uri (1.0.6-6) ... 93s Setting up binutils (2.44-3ubuntu1) ... 93s Setting up cloud-init-base (25.1-0ubuntu3) ... 95s Setting up linux-virtual (6.14.0-10.10) ... 95s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 95s Setting up cloud-init (25.1-0ubuntu3) ... 95s Processing triggers for systemd (257.3-1ubuntu3) ... 95s Processing triggers for man-db (2.13.0-1) ... 96s Processing triggers for dbus (1.16.2-1ubuntu1) ... 96s Processing triggers for libc-bin (2.41-1ubuntu1) ... 96s Processing triggers for initramfs-tools (0.146ubuntu1) ... 96s update-initramfs: Generating /boot/initrd.img-6.12.0-16-generic 96s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 106s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 106s /etc/kernel/postinst.d/initramfs-tools: 106s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 106s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 116s /etc/kernel/postinst.d/zz-update-grub: 116s Sourcing file `/etc/default/grub' 116s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 116s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 116s Generating grub configuration file ... 116s Found linux image: /boot/vmlinuz-6.14.0-10-generic 116s Found initrd image: /boot/initrd.img-6.14.0-10-generic 116s Found linux image: /boot/vmlinuz-6.12.0-16-generic 116s Found initrd image: /boot/initrd.img-6.12.0-16-generic 116s Found linux image: /boot/vmlinuz-6.11.0-8-generic 116s Found initrd image: /boot/initrd.img-6.11.0-8-generic 116s Warning: os-prober will not be executed to detect other bootable partitions. 116s Systems on them will not be added to the GRUB boot configuration. 116s Check GRUB_DISABLE_OS_PROBER documentation entry. 116s Adding boot menu entry for UEFI Firmware Settings ... 116s done 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s Solving dependencies... 118s The following packages will be REMOVED: 118s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 118s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 118s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 118s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 118s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 118s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 118s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 118s linux-tools-6.12.0-16-generic* 118s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 118s After this operation, 545 MB disk space will be freed. 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 119s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 119s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 119s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 119s Removing libpython3.12t64:amd64 (3.12.9-1) ... 119s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 119s Removing libnsl2:amd64 (1.3.0-3build3) ... 119s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 119s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 119s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 121s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 122s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 124s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 124s /etc/kernel/postrm.d/initramfs-tools: 124s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 124s /etc/kernel/postrm.d/zz-update-grub: 124s Sourcing file `/etc/default/grub' 124s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 124s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 124s Generating grub configuration file ... 124s Found linux image: /boot/vmlinuz-6.14.0-10-generic 124s Found initrd image: /boot/initrd.img-6.14.0-10-generic 124s Found linux image: /boot/vmlinuz-6.12.0-16-generic 124s Found initrd image: /boot/initrd.img-6.12.0-16-generic 124s Warning: os-prober will not be executed to detect other bootable partitions. 124s Systems on them will not be added to the GRUB boot configuration. 124s Check GRUB_DISABLE_OS_PROBER documentation entry. 124s Adding boot menu entry for UEFI Firmware Settings ... 124s done 124s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 125s W: Removing the running kernel 125s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 125s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 125s /etc/kernel/postrm.d/initramfs-tools: 125s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 125s /etc/kernel/postrm.d/zz-update-grub: 125s Sourcing file `/etc/default/grub' 125s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 125s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 125s Generating grub configuration file ... 125s Found linux image: /boot/vmlinuz-6.14.0-10-generic 125s Found initrd image: /boot/initrd.img-6.14.0-10-generic 125s Warning: os-prober will not be executed to detect other bootable partitions. 125s Systems on them will not be added to the GRUB boot configuration. 125s Check GRUB_DISABLE_OS_PROBER documentation entry. 125s Adding boot menu entry for UEFI Firmware Settings ... 125s done 125s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 125s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 127s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 127s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 127s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 127s Processing triggers for libc-bin (2.41-1ubuntu1) ... 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 127s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 127s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 127s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 127s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 127s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 127s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 127s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 127s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 127s autopkgtest [20:22:18]: upgrading testbed (apt dist-upgrade and autopurge) 127s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 128s Starting 2 pkgProblemResolver with broken count: 0 128s Done 128s Entering ResolveByKeep 129s 129s Calculating upgrade... 129s The following packages will be upgraded: 129s libc-bin libc-dev-bin libc6 libc6-dev locales 129s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 129s Need to get 10.5 MB of archives. 129s After this operation, 1024 B of additional disk space will be used. 129s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 129s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 129s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 129s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 129s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 130s Preconfiguring packages ... 130s Fetched 10.5 MB in 0s (23.8 MB/s) 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 130s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 130s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 130s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 130s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 130s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 130s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 130s Setting up libc6:amd64 (2.41-1ubuntu2) ... 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 131s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 131s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 131s Setting up libc-bin (2.41-1ubuntu2) ... 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 131s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 131s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 131s Setting up locales (2.41-1ubuntu2) ... 132s Generating locales (this might take a while)... 133s en_US.UTF-8... done 133s Generation complete. 133s Setting up libc-dev-bin (2.41-1ubuntu2) ... 133s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 133s Processing triggers for man-db (2.13.0-1) ... 134s Processing triggers for systemd (257.3-1ubuntu3) ... 134s Reading package lists... 135s Building dependency tree... 135s Reading state information... 135s Starting pkgProblemResolver with broken count: 0 135s Starting 2 pkgProblemResolver with broken count: 0 135s Done 135s Solving dependencies... 136s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 136s autopkgtest [20:22:27]: rebooting testbed after setup commands that affected boot 139s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 151s autopkgtest [20:22:42]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 152s autopkgtest [20:22:43]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-limma 154s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-limma 3.62.2+dfsg-1 (dsc) [2185 B] 154s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-limma 3.62.2+dfsg-1 (tar) [1564 kB] 154s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-limma 3.62.2+dfsg-1 (diff) [6388 B] 154s gpgv: Signature made Thu Jan 16 23:07:52 2025 UTC 154s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 154s gpgv: issuer "crusoe@debian.org" 154s gpgv: Can't check signature: No public key 154s dpkg-source: warning: cannot verify inline signature for ./r-bioc-limma_3.62.2+dfsg-1.dsc: no acceptable signature found 154s autopkgtest [20:22:45]: testing package r-bioc-limma version 3.62.2+dfsg-1 154s autopkgtest [20:22:45]: build not needed 158s autopkgtest [20:22:49]: test pkg-r-autopkgtest: preparing testbed 158s Reading package lists... 158s Building dependency tree... 158s Reading state information... 158s Starting pkgProblemResolver with broken count: 0 159s Starting 2 pkgProblemResolver with broken count: 0 159s Done 159s The following NEW packages will be installed: 159s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 159s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 159s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 159s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 159s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 159s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 159s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 159s libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev libdeflate0 159s libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 libgomp1 159s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 159s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 159s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 159s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 159s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 159s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 159s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 159s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 159s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev 159s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 159s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 159s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 159s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6 159s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 159s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 159s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 159s littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc 159s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 159s r-bioc-affy r-bioc-affyio r-bioc-annotationdbi r-bioc-biobase 159s r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biocversion r-bioc-biostrings 159s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-go.db r-bioc-iranges 159s r-bioc-keggrest r-bioc-limma r-bioc-org.hs.eg.db r-bioc-preprocesscore 159s r-bioc-s4vectors r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 159s r-cran-askpass r-cran-base64enc r-cran-biasedurn r-cran-biocmanager 159s r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown 159s r-cran-bslib r-cran-cachem r-cran-catools r-cran-cli r-cran-commonmark 159s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-digest 159s r-cran-ellipse r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs 159s r-cran-gdata r-cran-glue r-cran-gplots r-cran-gtools r-cran-highr 159s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite 159s r-cran-kernsmooth r-cran-knitr r-cran-later r-cran-lattice r-cran-lifecycle 159s r-cran-littler r-cran-locfit r-cran-magrittr r-cran-mass r-cran-memoise 159s r-cran-mime r-cran-openssl r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 159s r-cran-png r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcpp 159s r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-sass r-cran-shiny 159s r-cran-sourcetools r-cran-statmod r-cran-sys r-cran-tinytex r-cran-vctrs 159s r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml t1utils tex-common 159s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 159s x11-common xdg-utils zip zlib1g-dev 159s 0 upgraded, 238 newly installed, 0 to remove and 0 not upgraded. 159s Need to get 465 MB of archives. 159s After this operation, 1579 MB of additional disk space will be used. 159s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 159s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 159s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 160s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 160s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 160s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 160s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 160s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 160s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 160s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 160s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 160s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 160s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 160s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 160s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 160s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 160s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 161s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 161s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 161s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 161s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 161s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 161s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 161s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 161s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 161s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 161s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 161s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 161s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 161s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 161s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 161s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 161s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 161s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 161s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 161s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 161s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 161s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 161s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 161s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 161s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 161s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 161s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 161s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 161s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 161s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 161s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 161s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 161s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 161s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 161s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 161s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 161s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 161s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 161s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 161s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 161s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 161s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 161s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 161s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 161s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 161s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 161s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 162s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 162s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 162s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 162s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 162s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 162s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 162s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 162s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 162s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 162s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 162s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 162s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 162s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 162s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 162s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 162s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 162s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 162s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 162s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 162s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 162s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-5build2 [67.0 kB] 162s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 162s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 162s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 163s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 163s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 163s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 163s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 163s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 163s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 163s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 163s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 163s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 163s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 163s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 163s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 163s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 163s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 163s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 163s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 163s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 163s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 163s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-5build2 [43.7 kB] 163s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 163s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 163s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 163s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-5build2 [62.5 kB] 163s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 164s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 164s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-5build2 [145 kB] 164s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 164s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 164s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 164s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 164s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 164s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 164s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 164s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 164s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 164s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 164s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 164s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 164s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 164s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 164s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 164s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 165s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 165s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 165s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 165s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 165s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 165s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 165s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 165s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 165s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 165s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 165s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 165s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 165s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 165s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 165s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 165s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 165s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-affyio amd64 1.76.0-2 [97.6 kB] 165s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 165s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-preprocesscore amd64 1.68.0+ds-2 [174 kB] 165s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-affy amd64 1.84.0-2 [2021 kB] 166s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 166s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 166s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 166s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 166s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB] 166s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 166s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 166s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 166s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 166s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 166s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 166s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 166s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 166s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 166s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 166s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 166s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 166s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 166s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 166s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 166s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 166s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 166s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 166s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 166s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 166s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 166s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 166s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 166s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 166s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 166s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 166s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 166s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 166s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 166s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 167s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 167s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 167s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 167s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 167s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 167s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 167s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 167s Get:192 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 167s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 167s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 167s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 167s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 167s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 167s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 167s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 167s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 167s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 167s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 167s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 167s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 167s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 167s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 167s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 167s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 167s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 167s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 167s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 167s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 167s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 168s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 168s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 168s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB] 168s Get:217 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 168s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-5build2 [9799 kB] 168s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB] 169s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB] 169s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 172s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 172s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 172s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-go.db all 3.20.0-2 [16.5 MB] 172s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 173s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB] 173s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-org.hs.eg.db all 3.20.0-3 [63.1 MB] 175s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biasedurn amd64 2.0.12-1 [290 kB] 175s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB] 175s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-catools amd64 1.18.3-1 [209 kB] 175s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ellipse all 0.5.0-1 [153 kB] 175s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtools amd64 3.9.5-1 [340 kB] 175s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gdata all 3.0.1-1 [491 kB] 175s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 175s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernsmooth amd64 2.23-26-1 [94.5 kB] 175s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gplots all 3.2.0-1 [484 kB] 175s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 175s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-locfit amd64 1.5-9.12-1 [552 kB] 176s Preconfiguring packages ... 176s Fetched 465 MB in 16s (28.5 MB/s) 176s Selecting previously unselected package libisl23:amd64. 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 176s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 176s Unpacking libisl23:amd64 (0.27-1) ... 176s Selecting previously unselected package libmpc3:amd64. 176s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 176s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 176s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 176s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 176s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 177s Selecting previously unselected package cpp-14. 177s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 177s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 177s Selecting previously unselected package cpp-x86-64-linux-gnu. 177s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 177s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 177s Selecting previously unselected package cpp. 177s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 177s Unpacking cpp (4:14.2.0-1ubuntu1) ... 177s Selecting previously unselected package libcc1-0:amd64. 177s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 177s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 177s Selecting previously unselected package libgomp1:amd64. 177s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 177s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 177s Selecting previously unselected package libitm1:amd64. 177s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 177s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 177s Selecting previously unselected package libasan8:amd64. 177s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 177s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 177s Selecting previously unselected package liblsan0:amd64. 177s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 177s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 177s Selecting previously unselected package libtsan2:amd64. 177s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 177s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 177s Selecting previously unselected package libubsan1:amd64. 177s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 177s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 177s Selecting previously unselected package libhwasan0:amd64. 177s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 177s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 177s Selecting previously unselected package libquadmath0:amd64. 177s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 177s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 177s Selecting previously unselected package libgcc-14-dev:amd64. 177s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 177s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 177s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 177s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 177s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 177s Selecting previously unselected package gcc-14. 177s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 177s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 178s Selecting previously unselected package gcc-x86-64-linux-gnu. 178s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 178s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 178s Selecting previously unselected package gcc. 178s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 178s Unpacking gcc (4:14.2.0-1ubuntu1) ... 178s Selecting previously unselected package libstdc++-14-dev:amd64. 178s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 178s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 178s Selecting previously unselected package g++-14-x86-64-linux-gnu. 178s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 178s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 178s Selecting previously unselected package g++-14. 178s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ... 178s Unpacking g++-14 (14.2.0-17ubuntu3) ... 178s Selecting previously unselected package g++-x86-64-linux-gnu. 178s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 178s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 178s Selecting previously unselected package g++. 178s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 178s Unpacking g++ (4:14.2.0-1ubuntu1) ... 178s Selecting previously unselected package build-essential. 178s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 178s Unpacking build-essential (12.10ubuntu1) ... 178s Selecting previously unselected package dctrl-tools. 178s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 178s Unpacking dctrl-tools (2.24-3build3) ... 178s Selecting previously unselected package fonts-dejavu-mono. 178s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 178s Unpacking fonts-dejavu-mono (2.37-8) ... 178s Selecting previously unselected package fonts-dejavu-core. 178s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 178s Unpacking fonts-dejavu-core (2.37-8) ... 178s Selecting previously unselected package fontconfig-config. 178s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 178s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 178s Selecting previously unselected package libfontconfig1:amd64. 178s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 178s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 178s Selecting previously unselected package fontconfig. 178s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 178s Unpacking fontconfig (2.15.0-2ubuntu1) ... 178s Selecting previously unselected package fonts-font-awesome. 178s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 178s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 179s Selecting previously unselected package fonts-glyphicons-halflings. 179s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 179s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 179s Selecting previously unselected package fonts-lmodern. 179s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ... 179s Unpacking fonts-lmodern (2.005-1) ... 179s Selecting previously unselected package fonts-mathjax. 179s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 179s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 179s Selecting previously unselected package libgfortran5:amd64. 179s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 179s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 179s Selecting previously unselected package libgfortran-14-dev:amd64. 179s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 179s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) 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unselected package libjpeg-turbo8-dev:amd64. 180s Preparing to unpack .../064-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ... 180s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 180s Selecting previously unselected package libjpeg8:amd64. 180s Preparing to unpack .../065-libjpeg8_8c-2ubuntu11_amd64.deb ... 180s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 180s Selecting previously unselected package libjpeg8-dev:amd64. 180s Preparing to unpack .../066-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 180s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 180s Selecting previously unselected package libjpeg-dev:amd64. 180s Preparing to unpack .../067-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 180s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 180s Selecting previously unselected package libjs-bootstrap. 180s Preparing to unpack .../068-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 180s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 180s Selecting previously unselected package libjs-popper.js. 180s 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(3.12.1-2) ... 181s Selecting previously unselected package liblapack-dev:amd64. 181s Preparing to unpack .../085-liblapack-dev_3.12.1-2_amd64.deb ... 181s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 181s Selecting previously unselected package liblerc4:amd64. 181s Preparing to unpack .../086-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 181s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 181s Selecting previously unselected package liblua5.4-0:amd64. 181s Preparing to unpack .../087-liblua5.4-0_5.4.7-1_amd64.deb ... 181s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 181s Selecting previously unselected package libmpfi0:amd64. 181s Preparing to unpack .../088-libmpfi0_1.5.4+ds-4_amd64.deb ... 181s Unpacking libmpfi0:amd64 (1.5.4+ds-4) ... 181s Selecting previously unselected package libncurses-dev:amd64. 181s Preparing to unpack .../089-libncurses-dev_6.5+20250216-2_amd64.deb ... 181s Unpacking libncurses-dev:amd64 (6.5+20250216-2) ... 181s Selecting previously unselected package libthai-data. 181s Preparing to unpack .../090-libthai-data_0.1.29-2build1_all.deb ... 181s Unpacking libthai-data (0.1.29-2build1) ... 181s Selecting previously unselected package libthai0:amd64. 181s Preparing to unpack .../091-libthai0_0.1.29-2build1_amd64.deb ... 181s Unpacking libthai0:amd64 (0.1.29-2build1) ... 181s Selecting previously unselected package libpango-1.0-0:amd64. 181s Preparing to unpack .../092-libpango-1.0-0_1.56.2-1_amd64.deb ... 181s Unpacking libpango-1.0-0:amd64 (1.56.2-1) ... 181s Selecting previously unselected package libpangoft2-1.0-0:amd64. 181s Preparing to unpack .../093-libpangoft2-1.0-0_1.56.2-1_amd64.deb ... 181s Unpacking libpangoft2-1.0-0:amd64 (1.56.2-1) ... 181s Selecting previously unselected package libpangocairo-1.0-0:amd64. 181s Preparing to unpack .../094-libpangocairo-1.0-0_1.56.2-1_amd64.deb ... 181s Unpacking libpangocairo-1.0-0:amd64 (1.56.2-1) ... 181s Selecting previously unselected package libpaper2:amd64. 181s Preparing to unpack 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(10.45-1) ... 181s Selecting previously unselected package libpkgconf3:amd64. 181s Preparing to unpack .../101-libpkgconf3_1.8.1-4_amd64.deb ... 181s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 181s Selecting previously unselected package zlib1g-dev:amd64. 181s Preparing to unpack .../102-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 181s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 182s Selecting previously unselected package libpng-dev:amd64. 182s Preparing to unpack .../103-libpng-dev_1.6.47-1_amd64.deb ... 182s Unpacking libpng-dev:amd64 (1.6.47-1) ... 182s Selecting previously unselected package libpotrace0:amd64. 182s Preparing to unpack .../104-libpotrace0_1.16-2build1_amd64.deb ... 182s Unpacking libpotrace0:amd64 (1.16-2build1) ... 182s Selecting previously unselected package libptexenc1:amd64. 182s Preparing to unpack .../105-libptexenc1_2024.20240313.70630+ds-5build2_amd64.deb ... 182s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-5build2) ... 182s Selecting previously unselected package libreadline-dev:amd64. 182s Preparing to unpack .../106-libreadline-dev_8.2-6_amd64.deb ... 182s Unpacking libreadline-dev:amd64 (8.2-6) ... 182s Selecting previously unselected package libsharpyuv0:amd64. 182s Preparing to unpack .../107-libsharpyuv0_1.5.0-0.1_amd64.deb ... 182s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 182s Selecting previously unselected package libsm6:amd64. 182s Preparing to unpack .../108-libsm6_2%3a1.2.4-1_amd64.deb ... 182s Unpacking libsm6:amd64 (2:1.2.4-1) ... 182s Selecting previously unselected package libsynctex2:amd64. 182s Preparing to unpack .../109-libsynctex2_2024.20240313.70630+ds-5build2_amd64.deb ... 182s Unpacking libsynctex2:amd64 (2024.20240313.70630+ds-5build2) ... 182s Selecting previously unselected package libtcl8.6:amd64. 182s Preparing to unpack .../110-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 182s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 182s Selecting previously unselected package libteckit0:amd64. 182s Preparing to unpack .../111-libteckit0_2.5.12+ds1-1_amd64.deb ... 182s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 182s Selecting previously unselected package libtexlua53-5:amd64. 182s Preparing to unpack .../112-libtexlua53-5_2024.20240313.70630+ds-5build2_amd64.deb ... 182s Unpacking libtexlua53-5:amd64 (2024.20240313.70630+ds-5build2) ... 182s Selecting previously unselected package libjbig0:amd64. 182s Preparing to unpack .../113-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 182s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 182s Selecting previously unselected package libwebp7:amd64. 182s Preparing to unpack .../114-libwebp7_1.5.0-0.1_amd64.deb ... 182s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 182s Selecting previously unselected package libtiff6:amd64. 182s Preparing to unpack .../115-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 182s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 182s Selecting previously unselected package libxft2:amd64. 182s Preparing to unpack .../116-libxft2_2.3.6-1build1_amd64.deb ... 182s Unpacking libxft2:amd64 (2.3.6-1build1) ... 182s Selecting previously unselected package libxss1:amd64. 182s Preparing to unpack .../117-libxss1_1%3a1.2.3-1build3_amd64.deb ... 182s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 182s Selecting previously unselected package libtk8.6:amd64. 182s Preparing to unpack .../118-libtk8.6_8.6.16-1_amd64.deb ... 182s Unpacking libtk8.6:amd64 (8.6.16-1) ... 182s Selecting previously unselected package libxt6t64:amd64. 182s Preparing to unpack .../119-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 182s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 182s Selecting previously unselected package libxmu6:amd64. 182s Preparing to unpack .../120-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 182s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 182s Selecting previously unselected package libxpm4:amd64. 182s Preparing to unpack .../121-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 182s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 182s Selecting previously unselected package libxaw7:amd64. 182s Preparing to unpack .../122-libxaw7_2%3a1.0.16-1_amd64.deb ... 182s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 182s Selecting previously unselected package libxi6:amd64. 182s Preparing to unpack .../123-libxi6_2%3a1.8.2-1_amd64.deb ... 182s Unpacking libxi6:amd64 (2:1.8.2-1) ... 182s Selecting previously unselected package libzzip-0-13t64:amd64. 182s Preparing to unpack .../124-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 182s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 182s Selecting previously unselected package zip. 182s Preparing to unpack .../125-zip_3.0-14ubuntu2_amd64.deb ... 182s Unpacking zip (3.0-14ubuntu2) ... 182s Selecting previously unselected package unzip. 182s Preparing to unpack .../126-unzip_6.0-28ubuntu6_amd64.deb ... 182s Unpacking unzip (6.0-28ubuntu6) ... 182s Selecting previously unselected package xdg-utils. 182s Preparing to unpack .../127-xdg-utils_1.2.1-2ubuntu1_all.deb ... 182s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 182s Selecting previously unselected package r-base-core. 182s Preparing to unpack .../128-r-base-core_4.4.3-1_amd64.deb ... 182s Unpacking r-base-core (4.4.3-1) ... 183s Selecting previously unselected package r-cran-littler. 183s Preparing to unpack .../129-r-cran-littler_0.3.20-2_amd64.deb ... 183s Unpacking r-cran-littler (0.3.20-2) ... 183s Selecting previously unselected package littler. 183s Preparing to unpack .../130-littler_0.3.20-2_all.deb ... 183s Unpacking littler (0.3.20-2) ... 183s Selecting previously unselected package node-bootstrap-sass. 183s Preparing to unpack .../131-node-bootstrap-sass_3.4.3-2_all.deb ... 183s Unpacking node-bootstrap-sass (3.4.3-2) ... 183s Selecting previously unselected package node-html5shiv. 183s Preparing to unpack .../132-node-html5shiv_3.7.3+dfsg-5_all.deb ... 183s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 183s Selecting previously unselected package node-normalize.css. 183s Preparing to unpack .../133-node-normalize.css_8.0.1-5_all.deb ... 183s Unpacking node-normalize.css (8.0.1-5) ... 183s Selecting previously unselected package pandoc-data. 183s Preparing to unpack .../134-pandoc-data_3.1.11.1-3build1_all.deb ... 183s Unpacking pandoc-data (3.1.11.1-3build1) ... 183s Selecting previously unselected package pandoc. 183s Preparing to unpack .../135-pandoc_3.1.11.1+ds-2_amd64.deb ... 183s Unpacking pandoc (3.1.11.1+ds-2) ... 184s Selecting previously unselected package liblzma-dev:amd64. 184s Preparing to unpack .../136-liblzma-dev_5.6.4-1_amd64.deb ... 184s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 184s Selecting previously unselected package pkgconf-bin. 184s Preparing to unpack .../137-pkgconf-bin_1.8.1-4_amd64.deb ... 184s Unpacking pkgconf-bin (1.8.1-4) ... 184s Selecting previously unselected package pkgconf:amd64. 184s Preparing to unpack .../138-pkgconf_1.8.1-4_amd64.deb ... 184s Unpacking pkgconf:amd64 (1.8.1-4) ... 184s Selecting previously unselected package libtirpc-dev:amd64. 184s Preparing to unpack .../139-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 184s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 184s Selecting previously unselected package r-base-dev. 184s Preparing to unpack .../140-r-base-dev_4.4.3-1_all.deb ... 184s Unpacking r-base-dev (4.4.3-1) ... 184s Selecting previously unselected package pkg-r-autopkgtest. 184s Preparing to unpack .../141-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 184s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 184s Selecting previously unselected package r-bioc-biocgenerics. 184s Preparing to unpack .../142-r-bioc-biocgenerics_0.52.0-2_all.deb ... 184s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 184s Selecting previously unselected package r-bioc-biobase. 184s Preparing to unpack .../143-r-bioc-biobase_2.66.0-2_amd64.deb ... 184s Unpacking r-bioc-biobase (2.66.0-2) ... 184s Selecting previously unselected package r-bioc-zlibbioc. 184s Preparing to unpack .../144-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 184s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 184s Selecting previously unselected package r-bioc-affyio. 184s Preparing to unpack .../145-r-bioc-affyio_1.76.0-2_amd64.deb ... 184s Unpacking r-bioc-affyio (1.76.0-2) ... 184s Selecting previously unselected package r-cran-biocmanager. 184s Preparing to unpack .../146-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 184s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 184s Selecting previously unselected package r-bioc-preprocesscore. 184s Preparing to unpack .../147-r-bioc-preprocesscore_1.68.0+ds-2_amd64.deb ... 184s Unpacking r-bioc-preprocesscore (1.68.0+ds-2) ... 184s Selecting previously unselected package r-bioc-affy. 184s Preparing to unpack .../148-r-bioc-affy_1.84.0-2_amd64.deb ... 184s Unpacking r-bioc-affy (1.84.0-2) ... 184s Selecting previously unselected package r-bioc-s4vectors. 184s Preparing to unpack .../149-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 184s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 184s Selecting previously unselected package r-bioc-iranges. 184s Preparing to unpack .../150-r-bioc-iranges_2.40.1-2_amd64.deb ... 184s Unpacking r-bioc-iranges (2.40.1-2) ... 184s Selecting previously unselected package r-cran-dbi. 184s Preparing to unpack .../151-r-cran-dbi_1.2.3-1_all.deb ... 184s Unpacking r-cran-dbi (1.2.3-1) ... 184s Selecting previously unselected package r-cran-bit. 184s Preparing to unpack .../152-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 184s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 184s Selecting previously unselected package r-cran-bit64. 184s Preparing to unpack .../153-r-cran-bit64_4.6.0-1-1ubuntu2_amd64.deb ... 184s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 184s Selecting previously unselected package r-cran-rlang. 184s Preparing to unpack .../154-r-cran-rlang_1.1.5-1_amd64.deb ... 184s Unpacking r-cran-rlang (1.1.5-1) ... 184s Selecting previously unselected package r-cran-cli. 184s Preparing to unpack .../155-r-cran-cli_3.6.4-1_amd64.deb ... 184s Unpacking r-cran-cli (3.6.4-1) ... 184s Selecting previously unselected package r-cran-glue. 184s Preparing to unpack .../156-r-cran-glue_1.8.0-1_amd64.deb ... 184s Unpacking r-cran-glue (1.8.0-1) ... 185s Selecting previously unselected package r-cran-lifecycle. 185s Preparing to unpack .../157-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 185s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 185s Selecting previously unselected package r-cran-vctrs. 185s Preparing to unpack .../158-r-cran-vctrs_0.6.5-1_amd64.deb ... 185s Unpacking r-cran-vctrs (0.6.5-1) ... 185s Selecting previously unselected package r-cran-blob. 185s Preparing to unpack .../159-r-cran-blob_1.2.4-1_all.deb ... 185s Unpacking r-cran-blob (1.2.4-1) ... 185s Selecting previously unselected package r-cran-fastmap. 185s Preparing to unpack .../160-r-cran-fastmap_1.2.0-1_amd64.deb ... 185s Unpacking r-cran-fastmap (1.2.0-1) ... 185s Selecting previously unselected package r-cran-cachem. 185s Preparing to unpack .../161-r-cran-cachem_1.1.0-1_amd64.deb ... 185s Unpacking r-cran-cachem (1.1.0-1) ... 185s Selecting previously unselected package r-cran-memoise. 185s Preparing to unpack .../162-r-cran-memoise_2.0.1-1_all.deb ... 185s Unpacking r-cran-memoise (2.0.1-1) ... 185s Selecting previously unselected package r-cran-pkgconfig. 185s Preparing to unpack .../163-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 185s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 185s Selecting previously unselected package r-cran-plogr. 185s Preparing to unpack .../164-r-cran-plogr_0.2.0-3build1_all.deb ... 185s Unpacking r-cran-plogr (0.2.0-3build1) ... 185s Selecting previously unselected package r-cran-cpp11. 185s Preparing to unpack .../165-r-cran-cpp11_0.5.2-1_all.deb ... 185s Unpacking r-cran-cpp11 (0.5.2-1) ... 185s Selecting previously unselected package r-cran-rsqlite. 185s Preparing to unpack .../166-r-cran-rsqlite_2.3.9-1_amd64.deb ... 185s Unpacking r-cran-rsqlite (2.3.9-1) ... 185s Selecting previously unselected package r-cran-curl. 185s Preparing to unpack .../167-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 185s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 185s Selecting previously unselected package r-cran-jsonlite. 185s Preparing to unpack .../168-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 185s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 185s Selecting previously unselected package r-cran-mime. 185s Preparing to unpack .../169-r-cran-mime_0.12-2_amd64.deb ... 185s Unpacking r-cran-mime (0.12-2) ... 185s Selecting previously unselected package r-cran-sys. 185s Preparing to unpack .../170-r-cran-sys_3.4.3-1_amd64.deb ... 185s Unpacking r-cran-sys (3.4.3-1) ... 185s Selecting previously unselected package r-cran-askpass. 185s Preparing to unpack .../171-r-cran-askpass_1.2.1-1_amd64.deb ... 185s Unpacking r-cran-askpass (1.2.1-1) ... 185s Selecting previously unselected package r-cran-openssl. 185s Preparing to unpack .../172-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 185s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 185s Selecting previously unselected package r-cran-r6. 185s Preparing to unpack .../173-r-cran-r6_2.6.1-1_all.deb ... 185s Unpacking r-cran-r6 (2.6.1-1) ... 185s Selecting previously unselected package r-cran-httr. 185s Preparing to unpack .../174-r-cran-httr_1.4.7+dfsg-1_all.deb ... 185s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 185s Selecting previously unselected package r-cran-png. 185s Preparing to unpack .../175-r-cran-png_0.1-8-1build2_amd64.deb ... 185s Unpacking r-cran-png (0.1-8-1build2) ... 185s Selecting previously unselected package r-bioc-xvector. 185s Preparing to unpack .../176-r-bioc-xvector_0.46.0-2_amd64.deb ... 185s Unpacking r-bioc-xvector (0.46.0-2) ... 185s Selecting previously unselected package r-bioc-ucsc.utils. 185s Preparing to unpack .../177-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 185s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 185s Selecting previously unselected package r-bioc-genomeinfodbdata. 185s Preparing to unpack .../178-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 185s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 185s Selecting previously unselected package r-bioc-genomeinfodb. 185s Preparing to unpack .../179-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 185s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 185s Selecting previously unselected package r-cran-crayon. 185s Preparing to unpack .../180-r-cran-crayon_1.5.3-1_all.deb ... 185s Unpacking r-cran-crayon (1.5.3-1) ... 185s Selecting previously unselected package r-bioc-biostrings. 185s Preparing to unpack .../181-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 185s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 186s Selecting previously unselected package r-bioc-keggrest. 186s Preparing to unpack .../182-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 186s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 186s Selecting previously unselected package r-bioc-annotationdbi. 186s Preparing to unpack .../183-r-bioc-annotationdbi_1.68.0-2_all.deb ... 186s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 186s Selecting previously unselected package r-cran-base64enc. 186s Preparing to unpack .../184-r-cran-base64enc_0.1-3-3_amd64.deb ... 186s Unpacking r-cran-base64enc (0.1-3-3) ... 186s Selecting previously unselected package r-cran-digest. 186s Preparing to unpack .../185-r-cran-digest_0.6.37-1_amd64.deb ... 186s Unpacking r-cran-digest (0.6.37-1) ... 186s Selecting previously unselected package r-cran-htmltools. 186s Preparing to unpack .../186-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 186s Unpacking r-cran-htmltools (0.5.8.1-1) ... 186s Selecting previously unselected package r-cran-evaluate. 186s Preparing to unpack .../187-r-cran-evaluate_1.0.3-1_all.deb ... 186s Unpacking r-cran-evaluate (1.0.3-1) ... 186s Selecting previously unselected package r-cran-xfun. 186s Preparing to unpack .../188-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 186s Unpacking r-cran-xfun (0.51+dfsg-1) ... 186s Selecting previously unselected package r-cran-highr. 186s Preparing to unpack .../189-r-cran-highr_0.11+dfsg-1_all.deb ... 186s Unpacking r-cran-highr (0.11+dfsg-1) ... 186s Selecting previously unselected package r-cran-yaml. 186s Preparing to unpack .../190-r-cran-yaml_2.3.10-1_amd64.deb ... 186s Unpacking r-cran-yaml (2.3.10-1) ... 186s Selecting previously unselected package libjs-mathjax. 186s Preparing to unpack .../191-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 186s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 187s Selecting previously unselected package r-cran-knitr. 187s Preparing to unpack .../192-r-cran-knitr_1.49+dfsg-1_all.deb ... 187s Unpacking r-cran-knitr (1.49+dfsg-1) ... 187s Selecting previously unselected package r-cran-jquerylib. 187s Preparing to unpack .../193-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 187s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 187s Selecting previously unselected package r-cran-fs. 187s Preparing to unpack .../194-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 187s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 187s Selecting previously unselected package r-cran-rappdirs. 187s Preparing to unpack .../195-r-cran-rappdirs_0.3.3-1_amd64.deb ... 187s Unpacking r-cran-rappdirs (0.3.3-1) ... 187s Selecting previously unselected package r-cran-sass. 187s Preparing to unpack .../196-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 187s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 187s Selecting previously unselected package r-cran-bslib. 187s Preparing to unpack .../197-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 187s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 187s Selecting previously unselected package r-cran-fontawesome. 187s Preparing to unpack .../198-r-cran-fontawesome_0.5.3-1_all.deb ... 187s Unpacking r-cran-fontawesome (0.5.3-1) ... 187s Selecting previously unselected package r-cran-tinytex. 187s Preparing to unpack .../199-r-cran-tinytex_0.56-1_all.deb ... 187s Unpacking r-cran-tinytex (0.56-1) ... 187s Selecting previously unselected package libjs-modernizr. 187s Preparing to unpack .../200-libjs-modernizr_3.13.0-0.1_all.deb ... 187s Unpacking libjs-modernizr (3.13.0-0.1) ... 187s Selecting previously unselected package r-cran-pkgkitten. 187s Preparing to unpack .../201-r-cran-pkgkitten_0.2.4-1_all.deb ... 187s Unpacking r-cran-pkgkitten (0.2.4-1) ... 187s Selecting previously unselected package r-cran-rcpp. 187s Preparing to unpack .../202-r-cran-rcpp_1.0.14-1_amd64.deb ... 187s Unpacking r-cran-rcpp (1.0.14-1) ... 187s Selecting previously unselected package r-cran-later. 187s Preparing to unpack .../203-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 187s Unpacking r-cran-later (1.4.1+dfsg-1) ... 187s Selecting previously unselected package r-cran-magrittr. 187s Preparing to unpack .../204-r-cran-magrittr_2.0.3-1_amd64.deb ... 187s Unpacking r-cran-magrittr (2.0.3-1) ... 187s Selecting previously unselected package r-cran-promises. 187s Preparing to unpack .../205-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 187s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 187s Selecting previously unselected package r-cran-httpuv. 187s Preparing to unpack .../206-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 187s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 187s Selecting previously unselected package r-cran-xtable. 187s Preparing to unpack .../207-r-cran-xtable_1%3a1.8-4-2_all.deb ... 187s Unpacking r-cran-xtable (1:1.8-4-2) ... 187s Selecting previously unselected package r-cran-sourcetools. 187s Preparing to unpack .../208-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 187s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 188s Selecting previously unselected package r-cran-withr. 188s Preparing to unpack .../209-r-cran-withr_3.0.2+dfsg-1_all.deb ... 188s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 188s Selecting previously unselected package r-cran-commonmark. 188s Preparing to unpack .../210-r-cran-commonmark_1.9.2-2_amd64.deb ... 188s Unpacking r-cran-commonmark (1.9.2-2) ... 188s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 188s Preparing to unpack .../211-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 188s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 188s Selecting previously unselected package r-cran-shiny. 188s Preparing to unpack .../212-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 188s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 188s Selecting previously unselected package r-cran-rmarkdown. 188s Preparing to unpack .../213-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 188s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 188s Selecting previously unselected package r-cran-bookdown. 188s Preparing to unpack .../214-r-cran-bookdown_0.42+dfsg-1_all.deb ... 188s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 188s Selecting previously unselected package tex-common. 188s Preparing to unpack .../215-tex-common_6.19_all.deb ... 188s Unpacking tex-common (6.19) ... 188s Selecting previously unselected package t1utils. 188s Preparing to unpack .../216-t1utils_1.41-4build3_amd64.deb ... 188s Unpacking t1utils (1.41-4build3) ... 188s Selecting previously unselected package texlive-binaries. 188s Preparing to unpack .../217-texlive-binaries_2024.20240313.70630+ds-5build2_amd64.deb ... 188s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ... 188s Selecting previously unselected package texlive-base. 188s Preparing to unpack .../218-texlive-base_2024.20250114-1_all.deb ... 188s Unpacking texlive-base (2024.20250114-1) ... 189s Selecting previously unselected package texlive-latex-base. 189s Preparing to unpack .../219-texlive-latex-base_2024.20250114-1_all.deb ... 189s Unpacking texlive-latex-base (2024.20250114-1) ... 189s Selecting previously unselected package texlive-bibtex-extra. 189s Preparing to unpack .../220-texlive-bibtex-extra_2024.20250114-1_all.deb ... 189s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 191s Selecting previously unselected package r-bioc-biocversion. 191s Preparing to unpack .../221-r-bioc-biocversion_3.20.0-2_all.deb ... 191s Unpacking r-bioc-biocversion (3.20.0-2) ... 191s Selecting previously unselected package r-bioc-biocstyle. 191s Preparing to unpack .../222-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 191s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 191s Selecting previously unselected package r-bioc-go.db. 191s Preparing to unpack .../223-r-bioc-go.db_3.20.0-2_all.deb ... 191s Unpacking r-bioc-go.db (3.20.0-2) ... 192s Selecting previously unselected package r-cran-statmod. 192s Preparing to unpack .../224-r-cran-statmod_1.5.0-1_amd64.deb ... 192s Unpacking r-cran-statmod (1.5.0-1) ... 192s Selecting previously unselected package r-bioc-limma. 192s Preparing to unpack .../225-r-bioc-limma_3.62.2+dfsg-1_amd64.deb ... 192s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 192s Selecting previously unselected package r-bioc-org.hs.eg.db. 192s Preparing to unpack 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This may take some time... done. 202s Running mktexlsr /var/lib/texmf ... done. 202s Building format(s) --all. 230s This may take some time... done. 231s autopkgtest [20:24:02]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 231s autopkgtest [20:24:02]: test pkg-r-autopkgtest: [----------------------- 231s Test: Try to load the R library limma 231s 231s R version 4.4.3 (2025-02-28) -- "Trophy Case" 231s Copyright (C) 2025 The R Foundation for Statistical Computing 231s Platform: x86_64-pc-linux-gnu 231s 231s R is free software and comes with ABSOLUTELY NO WARRANTY. 231s You are welcome to redistribute it under certain conditions. 231s Type 'license()' or 'licence()' for distribution details. 231s 231s R is a collaborative project with many contributors. 231s Type 'contributors()' for more information and 231s 'citation()' on how to cite R or R packages in publications. 231s 231s Type 'demo()' for some demos, 'help()' for on-line help, or 231s 'help.start()' for an HTML browser interface to help. 231s Type 'q()' to quit R. 231s 232s > library('limma') 232s > 232s > 232s Other tests are currently unsupported! 232s They will be progressively added. 232s autopkgtest [20:24:03]: test pkg-r-autopkgtest: -----------------------] 232s pkg-r-autopkgtest PASS 232s autopkgtest [20:24:03]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 232s autopkgtest [20:24:03]: @@@@@@@@@@@@@@@@@@@@ summary 232s pkg-r-autopkgtest PASS 248s nova [W] Skipping flock for amd64 248s Creating nova instance adt-plucky-amd64-r-bioc-limma-20250315-202011-juju-7f2275-prod-proposed-migration-environment-2-f9f61dac-dfba-4a76-a937-021c20f01514 from image adt/ubuntu-plucky-amd64-server-20250306.img (UUID 60d877d7-b74c-4f24-920d-f4570db0a338)... 248s nova [W] Timed out waiting for 11833460-d153-406e-a0c3-1f65defc35c9 to get deleted.