0s autopkgtest [21:59:29]: starting date and time: 2025-03-15 21:59:29+0000 0s autopkgtest [21:59:29]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [21:59:29]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.vjcoa5tx/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-iranges --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@lcy02-8.secgroup --name adt-plucky-amd64-r-bioc-iranges-20250315-215929-juju-7f2275-prod-proposed-migration-environment-15-7e26af13-18cb-4ddc-81f5-206d81d3c7f0 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 48s autopkgtest [22:00:17]: testbed dpkg architecture: amd64 49s autopkgtest [22:00:18]: testbed apt version: 2.9.31ubuntu1 49s autopkgtest [22:00:18]: @@@@@@@@@@@@@@@@@@@@ test bed setup 49s autopkgtest [22:00:18]: testbed release detected to be: None 49s autopkgtest [22:00:18]: updating testbed package index (apt update) 49s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 49s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 49s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 49s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 49s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 49s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 49s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 49s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 49s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 49s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 49s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 49s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 49s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 49s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 49s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 49s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 49s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 50s Fetched 1265 kB in 0s (5072 kB/s) 50s Reading package lists... 51s + lsb_release --codename --short 51s + RELEASE=plucky 51s + cat 51s + [ plucky != trusty ] 51s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 51s Reading package lists... 51s Building dependency tree... 51s Reading state information... 51s Calculating upgrade... 52s Calculating upgrade... 52s The following package was automatically installed and is no longer required: 52s libnl-genl-3-200 52s Use 'sudo apt autoremove' to remove it. 52s The following NEW packages will be installed: 52s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 52s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 52s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 52s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 52s The following packages will be upgraded: 52s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 52s cloud-init cloud-init-base curl dosfstools fwupd gir1.2-girepository-2.0 52s gir1.2-glib-2.0 htop hwdata libapparmor1 libapt-pkg7.0 libaudit-common 52s libaudit1 libbinutils libbrotli1 libcap-ng0 libctf-nobfd0 libctf0 52s libcurl3t64-gnutls libcurl4t64 libestr0 libfwupd3 libgirepository-1.0-1 52s libglib2.0-0t64 libglib2.0-data libgprofng0 libjemalloc2 liblz4-1 liblzma5 52s libmm-glib0 libncurses6 libncursesw6 libnl-3-200 libnl-genl-3-200 52s libnl-route-3-200 libpci3 libpython3-stdlib libpython3.13 52s libpython3.13-minimal libpython3.13-stdlib libselinux1 libsframe1 52s libsqlite3-0 libtinfo6 libxml2 linux-firmware linux-generic 52s linux-headers-generic linux-headers-virtual linux-image-generic 52s linux-image-virtual linux-libc-dev linux-tools-common linux-virtual 52s media-types ncurses-base ncurses-bin ncurses-term pci.ids pciutils 52s pinentry-curses python-apt-common python3 python3-apt python3-cffi-backend 52s python3-dbus python3-gi python3-jinja2 python3-lazr.uri python3-markupsafe 52s python3-minimal python3-systemd python3-yaml python3.13 python3.13-gdbm 52s python3.13-minimal rsync rsyslog strace xz-utils 52s 86 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 52s Need to get 807 MB of archives. 52s After this operation, 326 MB of additional disk space will be used. 52s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 52s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 52s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 52s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 52s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 52s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 52s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 52s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 52s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 52s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 52s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 52s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 52s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 52s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 52s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 52s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 52s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 52s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 52s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 52s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 53s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 53s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 53s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 53s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 53s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 53s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 53s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 53s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 53s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 53s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 53s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 53s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 53s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 53s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 53s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 53s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 53s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 53s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 53s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 53s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 53s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 53s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 53s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 53s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 53s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 53s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 53s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 53s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 53s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 53s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 53s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 53s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 53s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 53s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 53s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 53s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 53s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 53s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 53s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 53s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 53s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 53s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 53s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 53s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 53s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 53s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 53s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 53s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 53s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 53s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 53s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 53s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 53s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 53s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 53s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 53s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 53s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 53s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 58s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 59s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 59s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 60s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 60s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 60s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 60s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 60s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 60s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 60s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 60s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 60s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 60s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 60s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 60s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 60s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 60s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 60s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 60s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 60s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 60s Preconfiguring packages ... 60s Fetched 807 MB in 8s (101 MB/s) 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 61s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ... 61s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ... 61s Setting up ncurses-bin (6.5+20250216-2) ... 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 61s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... 61s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ... 61s Setting up ncurses-base (6.5+20250216-2) ... 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 61s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ... 61s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ... 62s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ... 62s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ... 62s Setting up liblz4-1:amd64 (1.10.0-4) ... 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 62s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ... 62s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ... 62s Setting up liblzma5:amd64 (5.6.4-1) ... 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 62s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 62s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 62s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 62s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 62s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 62s Setting up apt (2.9.33) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 63s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 63s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 63s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 63s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 63s Setting up python3-minimal (3.13.2-2) ... 63s (Reading database ... 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Preparing to unpack .../68-python3-systemd_235-1build6_amd64.deb ... 80s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 80s Preparing to unpack .../69-python3.13-gdbm_3.13.2-2_amd64.deb ... 80s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 80s Preparing to unpack .../70-cloud-init_25.1-0ubuntu3_all.deb ... 80s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 80s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 80s Setting up media-types (13.0.0) ... 80s Installing new version of config file /etc/mime.types ... 80s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 80s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 80s Setting up pci.ids (0.0~2025.03.09-1) ... 80s Setting up apt-utils (2.9.33) ... 80s Setting up libdebuginfod-common (0.192-4) ... 80s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 80s Setting up bpftool (7.6.0+6.14.0-10.10) ... 80s Setting up libestr0:amd64 (0.1.11-2) ... 80s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 80s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 80s Setting up dosfstools (4.2-1.2) ... 80s Setting up rsyslog (8.2412.0-2ubuntu2) ... 80s info: The user `syslog' is already a member of `adm'. 81s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 81s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 81s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 81s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 81s Setting up linux-headers-generic (6.14.0-10.10) ... 81s Setting up libjemalloc2:amd64 (5.3.0-3) ... 81s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 81s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 81s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 81s Installing new version of config file /etc/apparmor.d/openvpn ... 82s Reloading AppArmor profiles 84s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 84s No schema files found: doing nothing. 84s Setting up libglib2.0-data (2.84.0-1) ... 84s Setting up libncurses6:amd64 (6.5+20250216-2) ... 84s Setting up strace (6.13+ds-1ubuntu1) ... 84s Setting up xz-utils (5.6.4-1) ... 84s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 84s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 86s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 86s Setting up libpci3:amd64 (1:3.13.0-2) ... 86s Setting up python-apt-common (2.9.9build1) ... 86s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 86s Setting up pnp.ids (0.393-3) ... 86s Setting up libnl-3-200:amd64 (3.7.0-1) ... 86s Setting up python3.13-minimal (3.13.2-2) ... 87s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 87s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 87s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 87s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 87s Setting up rsync (3.4.1+ds1-3) ... 87s rsync.service is a disabled or a static unit not running, not starting it. 87s Setting up python3.13-gdbm (3.13.2-2) ... 87s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 87s Setting up ncurses-term (6.5+20250216-2) ... 87s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 87s Setting up libpython3.13:amd64 (3.13.2-2) ... 87s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 87s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 87s Setting up linux-headers-virtual (6.14.0-10.10) ... 87s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 87s Setting up python3.13 (3.13.2-2) ... 88s Setting up htop (3.4.0-2) ... 88s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 90s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 90s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 90s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 90s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 90s Setting up libfwupd3:amd64 (2.0.6-4) ... 90s Setting up python3 (3.13.2-2) ... 91s Setting up python3-markupsafe (2.1.5-1build4) ... 91s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 93s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 93s Setting up hwdata (0.393-3) ... 93s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 93s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 93s Setting up linux-perf (6.14.0-10.10) ... 93s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 93s Setting up python3-gi (3.50.0-4build1) ... 93s Setting up pciutils (1:3.13.0-2) ... 93s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 93s Setting up curl (8.12.1-3ubuntu1) ... 93s Setting up linux-image-virtual (6.14.0-10.10) ... 93s Setting up linux-tools-common (6.14.0-10.10) ... 93s Setting up fwupd (2.0.6-4) ... 94s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 94s fwupd.service is a disabled or a static unit not running, not starting it. 94s Setting up python3-systemd (235-1build6) ... 94s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 94s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 94s Setting up linux-image-generic (6.14.0-10.10) ... 94s Setting up python3-dbus (1.3.2-5build5) ... 94s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 94s Setting up linux-generic (6.14.0-10.10) ... 94s Setting up python3-apt (2.9.9build1) ... 94s Setting up python3-yaml (6.0.2-1build2) ... 95s Setting up python3-lazr.uri (1.0.6-6) ... 95s Setting up binutils (2.44-3ubuntu1) ... 95s Setting up cloud-init-base (25.1-0ubuntu3) ... 96s Setting up linux-virtual (6.14.0-10.10) ... 96s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 96s Setting up cloud-init (25.1-0ubuntu3) ... 96s Processing triggers for systemd (257.3-1ubuntu3) ... 96s Processing triggers for man-db (2.13.0-1) ... 98s Processing triggers for dbus (1.16.2-1ubuntu1) ... 98s Processing triggers for libc-bin (2.41-1ubuntu1) ... 98s Processing triggers for initramfs-tools (0.146ubuntu1) ... 98s update-initramfs: Generating /boot/initrd.img-6.12.0-16-generic 98s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 109s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 109s /etc/kernel/postinst.d/initramfs-tools: 109s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 109s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 119s /etc/kernel/postinst.d/zz-update-grub: 119s Sourcing file `/etc/default/grub' 119s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 119s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 119s Generating grub configuration file ... 120s Found linux image: /boot/vmlinuz-6.14.0-10-generic 120s Found initrd image: /boot/initrd.img-6.14.0-10-generic 120s Found linux image: /boot/vmlinuz-6.12.0-16-generic 120s Found initrd image: /boot/initrd.img-6.12.0-16-generic 120s Found linux image: /boot/vmlinuz-6.11.0-8-generic 120s Found initrd image: /boot/initrd.img-6.11.0-8-generic 120s Warning: os-prober will not be executed to detect other bootable partitions. 120s Systems on them will not be added to the GRUB boot configuration. 120s Check GRUB_DISABLE_OS_PROBER documentation entry. 120s Adding boot menu entry for UEFI Firmware Settings ... 120s done 120s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 120s + /usr/lib/apt/apt-helper analyze-pattern ?true 120s + uname -r 120s + sed s/\./\\./g 120s + running_kernel_pattern=^linux-.*6\.12\.0-16-generic.* 120s + apt list ?obsolete 120s + grep -v ^linux-.*6\.12\.0-16-generic.* 120s + tail -n+2 120s + cut -d/ -f1 122s + obsolete_pkgs=linux-headers-6.11.0-8-generic 122s linux-headers-6.11.0-8 122s linux-headers-6.12.0-16 122s linux-image-6.11.0-8-generic 122s linux-modules-6.11.0-8-generic 122s linux-tools-6.11.0-8-generic 122s linux-tools-6.11.0-8 122s linux-tools-6.12.0-16 122s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-headers-6.12.0-16 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 linux-tools-6.12.0-16 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 123s Solving dependencies... 123s The following packages will be REMOVED: 123s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 123s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 123s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 123s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 123s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 123s linux-tools-6.12.0-16-generic* 123s 0 upgraded, 0 newly installed, 15 to remove and 5 not upgraded. 123s After this operation, 371 MB disk space will be freed. 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 123s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 123s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 123s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 123s Removing libpython3.12t64:amd64 (3.12.9-1) ... 123s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 123s Removing libnsl2:amd64 (1.3.0-3build3) ... 123s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 124s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 124s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 126s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 127s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 129s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 129s /etc/kernel/postrm.d/initramfs-tools: 129s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 129s /etc/kernel/postrm.d/zz-update-grub: 129s Sourcing file `/etc/default/grub' 129s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 129s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 129s Generating grub configuration file ... 129s Found linux image: /boot/vmlinuz-6.14.0-10-generic 129s Found initrd image: /boot/initrd.img-6.14.0-10-generic 129s Found linux image: /boot/vmlinuz-6.12.0-16-generic 129s Found initrd image: /boot/initrd.img-6.12.0-16-generic 130s Warning: os-prober will not be executed to detect other bootable partitions. 130s Systems on them will not be added to the GRUB boot configuration. 130s Check GRUB_DISABLE_OS_PROBER documentation entry. 130s Adding boot menu entry for UEFI Firmware Settings ... 130s done 130s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 130s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 130s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 130s Processing triggers for libc-bin (2.41-1ubuntu1) ... 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84830 files and directories currently installed.) 130s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 130s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 130s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 130s + grep -q trusty /etc/lsb-release 130s + [ ! -d /usr/share/doc/unattended-upgrades ] 130s + [ ! -d /usr/share/doc/lxd ] 130s + [ ! -d /usr/share/doc/lxd-client ] 130s + [ ! -d /usr/share/doc/snapd ] 130s + type iptables 130s + cat 130s + chmod 755 /etc/rc.local 130s + . /etc/rc.local 130s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 130s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 130s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 130s + uname -m 130s + [ x86_64 = ppc64le ] 130s + [ -d /run/systemd/system ] 130s + systemd-detect-virt --quiet --vm 130s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 130s + cat 130s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 130s + echo COMPRESS=lz4 130s autopkgtest [22:01:39]: upgrading testbed (apt dist-upgrade and autopurge) 130s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 131s Starting 2 pkgProblemResolver with broken count: 0 131s Done 132s Entering ResolveByKeep 132s 132s Calculating upgrade... 132s The following packages will be upgraded: 132s libc-bin libc-dev-bin libc6 libc6-dev locales 132s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s Need to get 10.5 MB of archives. 132s After this operation, 1024 B of additional disk space will be used. 132s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 133s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 133s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 133s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 133s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 133s Preconfiguring packages ... 133s Fetched 10.5 MB in 0s (28.0 MB/s) 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 133s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 133s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 133s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 133s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 134s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 134s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 134s Setting up libc6:amd64 (2.41-1ubuntu2) ... 134s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 134s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 134s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 134s Setting up libc-bin (2.41-1ubuntu2) ... 134s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 134s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 134s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 135s Setting up locales (2.41-1ubuntu2) ... 135s Generating locales (this might take a while)... 137s en_US.UTF-8... done 137s Generation complete. 137s Setting up libc-dev-bin (2.41-1ubuntu2) ... 137s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 137s Processing triggers for man-db (2.13.0-1) ... 137s Processing triggers for systemd (257.3-1ubuntu3) ... 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 139s Starting pkgProblemResolver with broken count: 0 139s Starting 2 pkgProblemResolver with broken count: 0 139s Done 139s Solving dependencies... 139s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s autopkgtest [22:01:48]: rebooting testbed after setup commands that affected boot 143s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 155s autopkgtest [22:02:04]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 156s autopkgtest [22:02:05]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-iranges 157s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-iranges 2.40.1-2 (dsc) [2182 B] 157s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-iranges 2.40.1-2 (tar) [487 kB] 157s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-iranges 2.40.1-2 (diff) [5564 B] 157s gpgv: Signature made Sun Jan 12 02:44:20 2025 UTC 157s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 157s gpgv: issuer "crusoe@debian.org" 157s gpgv: Can't check signature: No public key 157s dpkg-source: warning: cannot verify inline signature for ./r-bioc-iranges_2.40.1-2.dsc: no acceptable signature found 157s autopkgtest [22:02:06]: testing package r-bioc-iranges version 2.40.1-2 157s autopkgtest [22:02:06]: build not needed 159s autopkgtest [22:02:08]: test pkg-r-autopkgtest: preparing testbed 159s Reading package lists... 159s Building dependency tree... 159s Reading state information... 159s Starting pkgProblemResolver with broken count: 0 159s Starting 2 pkgProblemResolver with broken count: 0 159s Done 160s The following NEW packages will be installed: 160s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 160s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 160s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 160s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 160s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 160s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 160s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 160s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 160s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 160s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 160s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 160s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 160s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 160s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 160s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 160s libjs-popper.js libjs-prettify libjs-sifter.js 160s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 160s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 160s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 160s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 160s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 160s libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev 160s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 160s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 160s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 160s libxss1 libxt6t64 libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv 160s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 160s r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase 160s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 160s r-bioc-biocversion r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb 160s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 160s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 160s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 160s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 160s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass 160s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 160s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem 160s r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon 160s r-cran-curl r-cran-dbi r-cran-digest r-cran-evaluate r-cran-fastmap 160s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 160s r-cran-futile.options r-cran-glue r-cran-highr r-cran-htmltools 160s r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr 160s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 160s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 160s r-cran-openssl r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png 160s r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl 160s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 160s r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 160s r-cran-sys r-cran-tinytex r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml 160s r-cran-xtable r-cran-yaml t1utils tex-common texlive-base 160s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 160s xdg-utils zip zlib1g-dev 160s 0 upgraded, 252 newly installed, 0 to remove and 0 not upgraded. 160s Need to get 420 MB of archives. 160s After this operation, 1329 MB of additional disk space will be used. 160s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 160s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 160s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 161s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 161s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 161s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 161s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 161s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 161s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 161s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 161s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 161s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 161s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 161s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 161s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 161s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 161s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 162s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 162s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 162s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 162s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 162s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 162s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 162s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 162s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 162s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 162s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 162s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 162s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 162s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 162s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 162s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 162s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 162s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 162s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 162s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 162s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 162s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 162s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 163s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 163s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 163s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 163s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 163s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 163s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 163s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 163s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 163s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 163s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 163s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB] 163s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 163s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 163s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 163s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 163s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 163s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 163s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 163s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 163s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 163s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 163s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 163s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 163s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 163s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 163s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 163s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 163s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 163s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 163s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 163s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 163s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 163s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 163s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 163s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 163s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 163s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 163s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 163s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 163s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 163s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 163s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 163s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 163s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 163s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 163s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 163s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB] 163s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 163s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 163s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 163s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 163s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 163s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 163s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 163s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 163s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 163s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 163s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 163s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 163s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 163s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 163s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 163s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 163s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 164s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 164s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 164s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 164s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 164s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB] 164s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 164s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 164s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 164s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB] 164s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 164s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 164s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB] 164s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 164s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 164s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 164s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 164s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 164s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 164s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 164s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 164s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 164s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 164s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 164s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 164s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 164s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 164s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 164s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 165s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 165s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 165s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 165s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 165s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 165s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 165s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 165s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 165s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 165s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 165s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 165s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 165s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 165s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 165s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 165s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 165s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 166s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 166s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 166s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB] 166s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 166s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 166s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 166s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 166s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 166s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 166s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 166s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 166s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 166s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 166s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 166s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 166s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 166s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 166s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 166s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 166s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 166s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 166s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 166s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 166s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 166s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 166s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 166s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 166s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 166s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 166s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 166s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 166s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 166s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 166s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 166s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 166s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 166s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 166s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 166s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 166s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 166s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 166s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 166s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 166s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 166s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 166s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 166s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 166s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 166s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 166s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 166s Get:199 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 166s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 166s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 166s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 166s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 166s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 166s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 167s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 167s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 167s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 167s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 167s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 167s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 167s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 167s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 167s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 167s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 167s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 167s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 167s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 167s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 167s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 167s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 167s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 167s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 167s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB] 167s Get:225 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 167s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB] 167s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB] 167s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB] 167s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 168s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 168s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 168s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 168s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 168s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 168s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 168s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 168s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 168s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1392 kB] 168s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 168s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 168s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 168s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB] 168s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 168s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 168s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 168s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 168s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 168s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 168s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 168s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB] 168s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 168s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 168s Preconfiguring packages ... 169s Fetched 420 MB in 8s (54.0 MB/s) 169s Selecting previously unselected package libisl23:amd64. 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 169s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 169s Unpacking libisl23:amd64 (0.27-1) ... 169s Selecting previously unselected package libmpc3:amd64. 169s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 169s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 169s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 169s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 169s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 169s Selecting previously unselected package cpp-14. 169s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 169s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 169s Selecting previously unselected package cpp-x86-64-linux-gnu. 169s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 169s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 169s Selecting previously unselected package cpp. 169s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 169s Unpacking cpp (4:14.2.0-1ubuntu1) ... 169s Selecting previously unselected package libcc1-0:amd64. 169s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 169s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 169s Selecting previously unselected package libgomp1:amd64. 169s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 169s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 169s Selecting previously unselected package libitm1:amd64. 169s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 169s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 169s Selecting previously unselected package libasan8:amd64. 169s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 169s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 169s Selecting previously unselected package liblsan0:amd64. 169s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 169s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 169s Selecting previously unselected package libtsan2:amd64. 169s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 169s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 170s Selecting previously unselected package libubsan1:amd64. 170s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 170s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 170s Selecting previously unselected package libhwasan0:amd64. 170s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 170s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 170s Selecting previously unselected package libquadmath0:amd64. 170s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 170s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 170s Selecting previously unselected package libgcc-14-dev:amd64. 170s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 170s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 170s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 170s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 170s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 170s Selecting previously unselected package gcc-14. 170s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 170s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 170s Selecting previously unselected package gcc-x86-64-linux-gnu. 170s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 170s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 170s Selecting previously unselected package gcc. 170s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 170s Unpacking gcc (4:14.2.0-1ubuntu1) ... 170s Selecting previously unselected package libstdc++-14-dev:amd64. 170s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 170s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 170s Selecting previously unselected package g++-14-x86-64-linux-gnu. 170s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 170s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 171s Selecting previously unselected package g++-14. 171s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ... 171s Unpacking g++-14 (14.2.0-17ubuntu3) ... 171s Selecting previously unselected package g++-x86-64-linux-gnu. 171s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 171s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 171s Selecting previously unselected package g++. 171s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 171s Unpacking g++ (4:14.2.0-1ubuntu1) ... 171s Selecting previously unselected package build-essential. 171s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 171s Unpacking build-essential (12.10ubuntu1) ... 171s Selecting previously unselected package dctrl-tools. 171s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 171s Unpacking dctrl-tools (2.24-3build3) ... 171s Selecting previously unselected package fonts-dejavu-mono. 171s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 171s Unpacking fonts-dejavu-mono 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171s Selecting previously unselected package fonts-glyphicons-halflings. 171s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 171s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 171s Selecting previously unselected package fonts-lmodern. 171s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ... 171s Unpacking fonts-lmodern (2.005-1) ... 171s Selecting previously unselected package fonts-mathjax. 171s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 171s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 171s Selecting previously unselected package libgfortran5:amd64. 171s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 171s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 172s Selecting previously unselected package libgfortran-14-dev:amd64. 172s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 172s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) 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libdeflate0:amd64 (1.23-1) ... 175s Selecting previously unselected package libdeflate-dev:amd64. 175s Preparing to unpack .../059-libdeflate-dev_1.23-1_amd64.deb ... 175s Unpacking libdeflate-dev:amd64 (1.23-1) ... 175s Selecting previously unselected package libgraphite2-3:amd64. 175s Preparing to unpack .../060-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 175s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 175s Selecting previously unselected package libharfbuzz0b:amd64. 175s Preparing to unpack .../061-libharfbuzz0b_10.2.0-1_amd64.deb ... 175s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 175s Selecting previously unselected package x11-common. 175s Preparing to unpack .../062-x11-common_1%3a7.7+23ubuntu3_all.deb ... 175s Unpacking x11-common (1:7.7+23ubuntu3) ... 175s Selecting previously unselected package libice6:amd64. 175s Preparing to unpack .../063-libice6_2%3a1.1.1-1_amd64.deb ... 175s Unpacking libice6:amd64 (2:1.1.1-1) ... 175s Selecting previously unselected package libicu-dev:amd64. 175s Preparing to unpack .../064-libicu-dev_76.1-1ubuntu2_amd64.deb ... 175s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 175s Selecting previously unselected package libjpeg-turbo8:amd64. 175s Preparing to unpack .../065-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 175s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 175s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 175s Preparing to unpack .../066-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ... 175s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 175s Selecting previously unselected package libjpeg8:amd64. 175s Preparing to unpack .../067-libjpeg8_8c-2ubuntu11_amd64.deb ... 175s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 175s Selecting previously unselected package libjpeg8-dev:amd64. 175s Preparing to unpack .../068-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 175s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 175s Selecting previously unselected package libjpeg-dev:amd64. 175s 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previously unselected package libkpathsea6:amd64. 176s Preparing to unpack .../085-libkpathsea6_2024.20240313.70630+ds-6_amd64.deb ... 176s Unpacking libkpathsea6:amd64 (2024.20240313.70630+ds-6) ... 176s Selecting previously unselected package liblapack3:amd64. 176s Preparing to unpack .../086-liblapack3_3.12.1-2_amd64.deb ... 176s Unpacking liblapack3:amd64 (3.12.1-2) ... 176s Selecting previously unselected package liblapack-dev:amd64. 176s Preparing to unpack .../087-liblapack-dev_3.12.1-2_amd64.deb ... 176s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 176s Selecting previously unselected package liblerc4:amd64. 176s Preparing to unpack .../088-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 176s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 176s Selecting previously unselected package liblua5.4-0:amd64. 176s Preparing to unpack .../089-liblua5.4-0_5.4.7-1_amd64.deb ... 176s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 176s Selecting previously unselected package libmpfi0:amd64. 176s 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libpcre2-32-0:amd64 (10.45-1) ... 177s Selecting previously unselected package libpcre2-posix3:amd64. 177s Preparing to unpack .../101-libpcre2-posix3_10.45-1_amd64.deb ... 177s Unpacking libpcre2-posix3:amd64 (10.45-1) ... 177s Selecting previously unselected package libpcre2-dev:amd64. 177s Preparing to unpack .../102-libpcre2-dev_10.45-1_amd64.deb ... 177s Unpacking libpcre2-dev:amd64 (10.45-1) ... 177s Selecting previously unselected package libpkgconf3:amd64. 177s Preparing to unpack .../103-libpkgconf3_1.8.1-4_amd64.deb ... 177s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 177s Selecting previously unselected package zlib1g-dev:amd64. 177s Preparing to unpack .../104-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 177s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 177s Selecting previously unselected package libpng-dev:amd64. 177s Preparing to unpack .../105-libpng-dev_1.6.47-1_amd64.deb ... 177s Unpacking libpng-dev:amd64 (1.6.47-1) ... 177s Selecting previously unselected package libpotrace0:amd64. 177s Preparing to unpack .../106-libpotrace0_1.16-2build1_amd64.deb ... 177s Unpacking libpotrace0:amd64 (1.16-2build1) ... 177s Selecting previously unselected package libptexenc1:amd64. 177s Preparing to unpack .../107-libptexenc1_2024.20240313.70630+ds-6_amd64.deb ... 177s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-6) ... 177s Selecting previously unselected package libreadline-dev:amd64. 177s Preparing to unpack .../108-libreadline-dev_8.2-6_amd64.deb ... 177s Unpacking libreadline-dev:amd64 (8.2-6) ... 177s Selecting previously unselected package libsharpyuv0:amd64. 177s Preparing to unpack .../109-libsharpyuv0_1.5.0-0.1_amd64.deb ... 177s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 177s Selecting previously unselected package libsm6:amd64. 177s Preparing to unpack .../110-libsm6_2%3a1.2.4-1_amd64.deb ... 177s Unpacking libsm6:amd64 (2:1.2.4-1) ... 177s Selecting previously unselected package libsynctex2:amd64. 177s 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.../116-libwebp7_1.5.0-0.1_amd64.deb ... 177s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 177s Selecting previously unselected package libtiff6:amd64. 177s Preparing to unpack .../117-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 177s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 177s Selecting previously unselected package libxft2:amd64. 177s Preparing to unpack .../118-libxft2_2.3.6-1build1_amd64.deb ... 177s Unpacking libxft2:amd64 (2.3.6-1build1) ... 178s Selecting previously unselected package libxss1:amd64. 178s Preparing to unpack .../119-libxss1_1%3a1.2.3-1build3_amd64.deb ... 178s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 178s Selecting previously unselected package libtk8.6:amd64. 178s Preparing to unpack .../120-libtk8.6_8.6.16-1_amd64.deb ... 178s Unpacking libtk8.6:amd64 (8.6.16-1) ... 178s Selecting previously unselected package libxt6t64:amd64. 178s Preparing to unpack .../121-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 178s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 178s Selecting previously unselected package libxmu6:amd64. 178s Preparing to unpack .../122-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 178s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 178s Selecting previously unselected package libxpm4:amd64. 178s Preparing to unpack .../123-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 178s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 178s Selecting previously unselected package libxaw7:amd64. 178s Preparing to unpack .../124-libxaw7_2%3a1.0.16-1_amd64.deb ... 178s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 178s Selecting previously unselected package libxi6:amd64. 178s Preparing to unpack .../125-libxi6_2%3a1.8.2-1_amd64.deb ... 178s Unpacking libxi6:amd64 (2:1.8.2-1) ... 178s Selecting previously unselected package libzzip-0-13t64:amd64. 178s Preparing to unpack .../126-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 178s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 178s Selecting previously unselected package zip. 178s Preparing to unpack .../127-zip_3.0-14ubuntu2_amd64.deb ... 178s Unpacking zip (3.0-14ubuntu2) ... 178s Selecting previously unselected package unzip. 178s Preparing to unpack .../128-unzip_6.0-28ubuntu6_amd64.deb ... 178s Unpacking unzip (6.0-28ubuntu6) ... 178s Selecting previously unselected package xdg-utils. 178s Preparing to unpack .../129-xdg-utils_1.2.1-2ubuntu1_all.deb ... 178s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 178s Selecting previously unselected package r-base-core. 178s Preparing to unpack .../130-r-base-core_4.4.3-1_amd64.deb ... 178s Unpacking r-base-core (4.4.3-1) ... 178s Selecting previously unselected package r-cran-littler. 178s Preparing to unpack .../131-r-cran-littler_0.3.20-2_amd64.deb ... 178s Unpacking r-cran-littler (0.3.20-2) ... 178s Selecting previously unselected package littler. 178s Preparing to unpack .../132-littler_0.3.20-2_all.deb ... 178s Unpacking littler (0.3.20-2) ... 178s Selecting previously unselected package node-bootstrap-sass. 178s Preparing to unpack .../133-node-bootstrap-sass_3.4.3-2_all.deb ... 178s Unpacking node-bootstrap-sass (3.4.3-2) ... 178s Selecting previously unselected package node-html5shiv. 178s Preparing to unpack .../134-node-html5shiv_3.7.3+dfsg-5_all.deb ... 178s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 179s Selecting previously unselected package node-normalize.css. 179s Preparing to unpack .../135-node-normalize.css_8.0.1-5_all.deb ... 179s Unpacking node-normalize.css (8.0.1-5) ... 179s Selecting previously unselected package pandoc-data. 179s Preparing to unpack .../136-pandoc-data_3.1.11.1-3build1_all.deb ... 179s Unpacking pandoc-data (3.1.11.1-3build1) ... 179s Selecting previously unselected package pandoc. 179s Preparing to unpack .../137-pandoc_3.1.11.1+ds-2_amd64.deb ... 179s Unpacking pandoc (3.1.11.1+ds-2) ... 179s Selecting previously unselected package liblzma-dev:amd64. 179s Preparing to unpack .../138-liblzma-dev_5.6.4-1_amd64.deb ... 179s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 179s Selecting previously unselected package pkgconf-bin. 179s Preparing to unpack .../139-pkgconf-bin_1.8.1-4_amd64.deb ... 179s Unpacking pkgconf-bin (1.8.1-4) ... 179s Selecting previously unselected package pkgconf:amd64. 179s Preparing to unpack .../140-pkgconf_1.8.1-4_amd64.deb ... 179s Unpacking pkgconf:amd64 (1.8.1-4) ... 180s Selecting previously unselected package libtirpc-dev:amd64. 180s Preparing to unpack .../141-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 180s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 180s Selecting previously unselected package r-base-dev. 180s Preparing to unpack .../142-r-base-dev_4.4.3-1_all.deb ... 180s Unpacking r-base-dev (4.4.3-1) ... 180s Selecting previously unselected package pkg-r-autopkgtest. 180s Preparing to unpack .../143-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 180s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 180s Selecting previously unselected package r-bioc-biocgenerics. 180s Preparing to unpack .../144-r-bioc-biocgenerics_0.52.0-2_all.deb ... 180s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 180s Selecting previously unselected package r-bioc-biobase. 180s Preparing to unpack .../145-r-bioc-biobase_2.66.0-2_amd64.deb ... 180s Unpacking r-bioc-biobase (2.66.0-2) ... 180s Selecting previously unselected package r-bioc-s4vectors. 180s Preparing to unpack .../146-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 180s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 180s Selecting previously unselected package r-bioc-iranges. 180s Preparing to unpack .../147-r-bioc-iranges_2.40.1-2_amd64.deb ... 180s Unpacking r-bioc-iranges (2.40.1-2) ... 180s Selecting previously unselected package r-cran-dbi. 180s Preparing to unpack .../148-r-cran-dbi_1.2.3-1_all.deb ... 180s Unpacking r-cran-dbi (1.2.3-1) ... 180s Selecting previously unselected package r-cran-bit. 180s Preparing to unpack .../149-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 180s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 180s Selecting previously unselected package r-cran-bit64. 180s Preparing to unpack .../150-r-cran-bit64_4.6.0-1-1ubuntu2_amd64.deb ... 180s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 180s Selecting previously unselected package r-cran-rlang. 180s Preparing to unpack .../151-r-cran-rlang_1.1.5-1_amd64.deb ... 180s Unpacking r-cran-rlang (1.1.5-1) ... 180s Selecting previously unselected package r-cran-cli. 180s Preparing to unpack .../152-r-cran-cli_3.6.4-1_amd64.deb ... 180s Unpacking r-cran-cli (3.6.4-1) ... 180s Selecting previously unselected package r-cran-glue. 180s Preparing to unpack .../153-r-cran-glue_1.8.0-1_amd64.deb ... 180s Unpacking r-cran-glue (1.8.0-1) ... 180s Selecting previously unselected package r-cran-lifecycle. 180s Preparing to unpack .../154-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 180s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 180s Selecting previously unselected package r-cran-vctrs. 180s Preparing to unpack .../155-r-cran-vctrs_0.6.5-1_amd64.deb ... 180s Unpacking r-cran-vctrs (0.6.5-1) ... 180s Selecting previously unselected package r-cran-blob. 180s Preparing to unpack .../156-r-cran-blob_1.2.4-1_all.deb ... 180s Unpacking r-cran-blob (1.2.4-1) ... 180s Selecting previously unselected package r-cran-fastmap. 180s Preparing to unpack .../157-r-cran-fastmap_1.2.0-1_amd64.deb ... 180s Unpacking r-cran-fastmap (1.2.0-1) ... 180s Selecting previously unselected package r-cran-cachem. 180s Preparing to unpack .../158-r-cran-cachem_1.1.0-1_amd64.deb ... 180s Unpacking r-cran-cachem (1.1.0-1) ... 180s Selecting previously unselected package r-cran-memoise. 180s Preparing to unpack .../159-r-cran-memoise_2.0.1-1_all.deb ... 180s Unpacking r-cran-memoise (2.0.1-1) ... 180s Selecting previously unselected package r-cran-pkgconfig. 180s Preparing to unpack .../160-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 180s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 180s Selecting previously unselected package r-cran-plogr. 180s Preparing to unpack .../161-r-cran-plogr_0.2.0-3build1_all.deb ... 180s Unpacking r-cran-plogr (0.2.0-3build1) ... 180s Selecting previously unselected package r-cran-cpp11. 180s Preparing to unpack .../162-r-cran-cpp11_0.5.2-1_all.deb ... 180s Unpacking r-cran-cpp11 (0.5.2-1) ... 181s Selecting previously unselected package r-cran-rsqlite. 181s Preparing to unpack .../163-r-cran-rsqlite_2.3.9-1_amd64.deb ... 181s Unpacking r-cran-rsqlite (2.3.9-1) ... 181s Selecting previously unselected package r-cran-curl. 181s Preparing to unpack .../164-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 181s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 181s Selecting previously unselected package r-cran-jsonlite. 181s Preparing to unpack .../165-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 181s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 181s Selecting previously unselected package r-cran-mime. 181s Preparing to unpack .../166-r-cran-mime_0.12-2_amd64.deb ... 181s Unpacking r-cran-mime (0.12-2) ... 181s Selecting previously unselected package r-cran-sys. 181s Preparing to unpack .../167-r-cran-sys_3.4.3-1_amd64.deb ... 181s Unpacking r-cran-sys (3.4.3-1) ... 181s Selecting previously unselected package r-cran-askpass. 181s Preparing to unpack .../168-r-cran-askpass_1.2.1-1_amd64.deb ... 181s Unpacking r-cran-askpass (1.2.1-1) ... 181s Selecting previously unselected package r-cran-openssl. 181s Preparing to unpack .../169-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 181s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 181s Selecting previously unselected package r-cran-r6. 181s Preparing to unpack .../170-r-cran-r6_2.6.1-1_all.deb ... 181s Unpacking r-cran-r6 (2.6.1-1) ... 181s Selecting previously unselected package r-cran-httr. 181s Preparing to unpack .../171-r-cran-httr_1.4.7+dfsg-1_all.deb ... 181s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 181s Selecting previously unselected package r-cran-png. 181s Preparing to unpack .../172-r-cran-png_0.1-8-1build2_amd64.deb ... 181s Unpacking r-cran-png (0.1-8-1build2) ... 181s Selecting previously unselected package r-bioc-zlibbioc. 181s Preparing to unpack .../173-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 181s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 181s Selecting previously unselected package r-bioc-xvector. 181s Preparing to unpack .../174-r-bioc-xvector_0.46.0-2_amd64.deb ... 181s Unpacking r-bioc-xvector (0.46.0-2) ... 181s Selecting previously unselected package r-bioc-ucsc.utils. 181s Preparing to unpack .../175-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 181s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 181s Selecting previously unselected package r-bioc-genomeinfodbdata. 181s Preparing to unpack .../176-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 181s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 181s Selecting previously unselected package r-bioc-genomeinfodb. 181s Preparing to unpack .../177-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 181s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 181s Selecting previously unselected package r-cran-crayon. 181s Preparing to unpack .../178-r-cran-crayon_1.5.3-1_all.deb ... 181s Unpacking r-cran-crayon (1.5.3-1) ... 181s Selecting previously unselected package r-bioc-biostrings. 181s Preparing to unpack .../179-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 181s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 181s Selecting previously unselected package r-bioc-keggrest. 181s Preparing to unpack .../180-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 181s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 181s Selecting previously unselected package r-bioc-annotationdbi. 181s Preparing to unpack .../181-r-bioc-annotationdbi_1.68.0-2_all.deb ... 181s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 182s Selecting previously unselected package r-bioc-biocio. 182s Preparing to unpack .../182-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 182s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 182s Selecting previously unselected package r-cran-formatr. 182s Preparing to unpack .../183-r-cran-formatr_1.14-2_all.deb ... 182s Unpacking r-cran-formatr (1.14-2) ... 182s Selecting previously unselected package r-cran-lambda.r. 182s Preparing to unpack .../184-r-cran-lambda.r_1.2.4-2build1_all.deb ... 182s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 182s Selecting previously unselected package r-cran-futile.options. 182s Preparing to unpack .../185-r-cran-futile.options_1.0.1-3build1_all.deb ... 182s Unpacking r-cran-futile.options (1.0.1-3build1) ... 182s Selecting previously unselected package r-cran-futile.logger. 182s Preparing to unpack .../186-r-cran-futile.logger_1.4.3-4build1_all.deb ... 182s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 182s Selecting previously unselected package r-cran-snow. 182s Preparing to unpack .../187-r-cran-snow_1%3a0.4.4-2_all.deb ... 182s Unpacking r-cran-snow (1:0.4.4-2) ... 182s Selecting previously unselected package r-cran-codetools. 182s Preparing to unpack .../188-r-cran-codetools_0.2-20-1_all.deb ... 182s Unpacking r-cran-codetools (0.2-20-1) ... 182s Selecting previously unselected package r-cran-bh. 182s Preparing to unpack .../189-r-cran-bh_1.84.0-1_all.deb ... 182s Unpacking r-cran-bh (1.84.0-1) ... 182s Selecting previously unselected package r-bioc-biocparallel. 182s Preparing to unpack .../190-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 182s Unpacking r-bioc-biocparallel (1.40.0-2) ... 182s Selecting previously unselected package r-cran-base64enc. 182s Preparing to unpack .../191-r-cran-base64enc_0.1-3-3_amd64.deb ... 182s Unpacking r-cran-base64enc (0.1-3-3) ... 182s Selecting previously unselected package r-cran-digest. 182s Preparing to unpack .../192-r-cran-digest_0.6.37-1_amd64.deb ... 182s Unpacking r-cran-digest (0.6.37-1) ... 182s Selecting previously unselected package r-cran-htmltools. 182s Preparing to unpack .../193-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 182s Unpacking r-cran-htmltools (0.5.8.1-1) ... 182s Selecting previously unselected package r-cran-evaluate. 182s Preparing to unpack .../194-r-cran-evaluate_1.0.3-1_all.deb ... 182s Unpacking r-cran-evaluate (1.0.3-1) ... 182s Selecting previously unselected package r-cran-xfun. 182s Preparing to unpack .../195-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 182s Unpacking r-cran-xfun (0.51+dfsg-1) ... 182s Selecting previously unselected package r-cran-highr. 182s Preparing to unpack .../196-r-cran-highr_0.11+dfsg-1_all.deb ... 182s Unpacking r-cran-highr (0.11+dfsg-1) ... 182s Selecting previously unselected package r-cran-yaml. 182s Preparing to unpack .../197-r-cran-yaml_2.3.10-1_amd64.deb ... 182s Unpacking r-cran-yaml (2.3.10-1) ... 182s Selecting previously unselected package libjs-mathjax. 182s Preparing to unpack .../198-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 182s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 183s Selecting previously unselected package r-cran-knitr. 183s Preparing to unpack .../199-r-cran-knitr_1.49+dfsg-1_all.deb ... 183s Unpacking r-cran-knitr (1.49+dfsg-1) ... 183s Selecting previously unselected package r-cran-jquerylib. 183s Preparing to unpack .../200-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 183s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 183s Selecting previously unselected package r-cran-fs. 183s Preparing to unpack .../201-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 183s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 183s Selecting previously unselected package r-cran-rappdirs. 183s Preparing to unpack .../202-r-cran-rappdirs_0.3.3-1_amd64.deb ... 183s Unpacking r-cran-rappdirs (0.3.3-1) ... 183s Selecting previously unselected package r-cran-sass. 183s Preparing to unpack .../203-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 183s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 183s Selecting previously unselected package r-cran-bslib. 183s Preparing to unpack .../204-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 183s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 183s Selecting previously unselected package r-cran-fontawesome. 183s Preparing to unpack .../205-r-cran-fontawesome_0.5.3-1_all.deb ... 183s Unpacking r-cran-fontawesome (0.5.3-1) ... 183s Selecting previously unselected package r-cran-tinytex. 183s Preparing to unpack .../206-r-cran-tinytex_0.56-1_all.deb ... 183s Unpacking r-cran-tinytex (0.56-1) ... 183s Selecting previously unselected package libjs-modernizr. 183s Preparing to unpack .../207-libjs-modernizr_3.13.0-0.1_all.deb ... 183s Unpacking libjs-modernizr (3.13.0-0.1) ... 183s Selecting previously unselected package r-cran-pkgkitten. 183s Preparing to unpack .../208-r-cran-pkgkitten_0.2.4-1_all.deb ... 183s Unpacking r-cran-pkgkitten (0.2.4-1) ... 183s Selecting previously unselected package r-cran-rcpp. 183s Preparing to unpack .../209-r-cran-rcpp_1.0.14-1_amd64.deb ... 183s Unpacking r-cran-rcpp (1.0.14-1) ... 184s Selecting previously unselected package r-cran-later. 184s Preparing to unpack .../210-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 184s Unpacking r-cran-later (1.4.1+dfsg-1) ... 184s Selecting previously unselected package r-cran-magrittr. 184s Preparing to unpack .../211-r-cran-magrittr_2.0.3-1_amd64.deb ... 184s Unpacking r-cran-magrittr (2.0.3-1) ... 184s Selecting previously unselected package r-cran-promises. 184s Preparing to unpack .../212-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 184s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 184s Selecting previously unselected package r-cran-httpuv. 184s Preparing to unpack .../213-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 184s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 184s Selecting previously unselected package r-cran-xtable. 184s Preparing to unpack .../214-r-cran-xtable_1%3a1.8-4-2_all.deb ... 184s Unpacking r-cran-xtable (1:1.8-4-2) ... 184s Selecting previously unselected package r-cran-sourcetools. 184s Preparing to unpack .../215-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 184s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 184s Selecting previously unselected package r-cran-withr. 184s Preparing to unpack .../216-r-cran-withr_3.0.2+dfsg-1_all.deb ... 184s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 184s Selecting previously unselected package r-cran-commonmark. 184s Preparing to unpack .../217-r-cran-commonmark_1.9.2-2_amd64.deb ... 184s Unpacking r-cran-commonmark (1.9.2-2) ... 184s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 184s Preparing to unpack .../218-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 184s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 184s Selecting previously unselected package r-cran-shiny. 184s Preparing to unpack .../219-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 184s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 184s Selecting previously unselected package r-cran-rmarkdown. 184s Preparing to unpack .../220-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 184s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 184s Selecting previously unselected package r-cran-bookdown. 184s Preparing to unpack .../221-r-cran-bookdown_0.42+dfsg-1_all.deb ... 184s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 184s Selecting previously unselected package r-cran-biocmanager. 184s Preparing to unpack .../222-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 184s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 184s Selecting previously unselected package tex-common. 184s Preparing to unpack .../223-tex-common_6.19_all.deb ... 184s Unpacking tex-common (6.19) ... 184s Selecting previously unselected package t1utils. 184s Preparing to unpack .../224-t1utils_1.41-4build3_amd64.deb ... 184s Unpacking t1utils (1.41-4build3) ... 185s Selecting previously unselected package texlive-binaries. 185s Preparing to unpack .../225-texlive-binaries_2024.20240313.70630+ds-6_amd64.deb ... 185s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ... 185s Selecting previously unselected package texlive-base. 185s Preparing to unpack .../226-texlive-base_2024.20250114-1_all.deb ... 185s Unpacking texlive-base (2024.20250114-1) ... 186s Selecting previously unselected package texlive-latex-base. 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Setting up g++ (4:14.2.0-1ubuntu1) ... 195s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 195s Setting up r-cran-cachem (1.1.0-1) ... 195s Setting up r-cran-sass (0.4.9+dfsg-1) ... 195s Setting up build-essential (12.10ubuntu1) ... 195s Setting up r-bioc-iranges (2.40.1-2) ... 195s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 195s Setting up r-cran-restfulr (0.0.15-1) ... 195s Setting up r-cran-vctrs (0.6.5-1) ... 195s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 195s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 195s Setting up r-bioc-biocparallel (1.40.0-2) ... 195s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 195s Setting up r-cran-fontawesome (0.5.3-1) ... 195s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 195s Setting up gfortran (4:14.2.0-1ubuntu1) ... 195s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 195s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 195s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 195s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 195s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 195s Setting up texlive-bibtex-extra (2024.20250114-1) ... 195s Setting up r-cran-httr (1.4.7+dfsg-1) ... 195s Setting up r-cran-memoise (2.0.1-1) ... 195s Setting up r-cran-promises (1.3.2+dfsg-1) ... 195s Setting up r-cran-blob (1.2.4-1) ... 195s Setting up r-bioc-xvector (0.46.0-2) ... 195s Setting up r-cran-rsqlite (2.3.9-1) ... 195s Setting up r-base-dev (4.4.3-1) ... 195s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 195s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 195s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 195s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 195s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 195s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 195s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 195s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 195s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 195s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 195s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 195s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 195s Setting up r-cran-bookdown (0.42+dfsg-1) ... 195s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 195s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 195s Setting up r-bioc-annotationdbi (1.68.0-2) ... 195s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 195s Setting up r-bioc-genomicalignments (1.42.0-2) ... 195s Setting up r-bioc-rtracklayer (1.66.0-2) ... 195s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 195s Processing triggers for man-db (2.13.0-1) ... 197s Processing triggers for install-info (7.1.1-1) ... 197s Processing triggers for libc-bin (2.41-1ubuntu2) ... 197s Processing triggers for tex-common (6.19) ... 197s Running updmap-sys. This may take some time... done. 197s Running mktexlsr /var/lib/texmf ... done. 197s Building format(s) --all. 229s This may take some time... done. 229s autopkgtest [22:03:18]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 229s autopkgtest [22:03:18]: test pkg-r-autopkgtest: [----------------------- 229s Test: Try to load the R library IRanges 230s 230s R version 4.4.3 (2025-02-28) -- "Trophy Case" 230s Copyright (C) 2025 The R Foundation for Statistical Computing 230s Platform: x86_64-pc-linux-gnu 230s 230s R is free software and comes with ABSOLUTELY NO WARRANTY. 230s You are welcome to redistribute it under certain conditions. 230s Type 'license()' or 'licence()' for distribution details. 230s 230s R is a collaborative project with many contributors. 230s Type 'contributors()' for more information and 230s 'citation()' on how to cite R or R packages in publications. 230s 230s Type 'demo()' for some demos, 'help()' for on-line help, or 230s 'help.start()' for an HTML browser interface to help. 230s Type 'q()' to quit R. 230s 230s > library('IRanges') 230s Loading required package: BiocGenerics 230s 230s Attaching package: ‘BiocGenerics’ 230s 230s The following objects are masked from ‘package:stats’: 230s 230s IQR, mad, sd, var, xtabs 230s 230s The following objects are masked from ‘package:base’: 230s 230s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 230s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 230s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 230s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 230s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 230s table, tapply, union, unique, unsplit, which.max, which.min 230s 230s Loading required package: S4Vectors 230s Loading required package: stats4 230s 230s Attaching package: ‘S4Vectors’ 230s 230s The following object is masked from ‘package:utils’: 230s 230s findMatches 230s 230s The following objects are masked from ‘package:base’: 230s 230s expand.grid, I, unname 230s 231s > 231s > 231s Other tests are currently unsupported! 231s They will be progressively added. 231s autopkgtest [22:03:20]: test pkg-r-autopkgtest: -----------------------] 232s autopkgtest [22:03:21]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 232s pkg-r-autopkgtest PASS 232s autopkgtest [22:03:21]: @@@@@@@@@@@@@@@@@@@@ summary 232s pkg-r-autopkgtest PASS 248s nova [W] Skipping flock for amd64 248s Creating nova instance adt-plucky-amd64-r-bioc-iranges-20250315-215929-juju-7f2275-prod-proposed-migration-environment-15-7e26af13-18cb-4ddc-81f5-206d81d3c7f0 from image adt/ubuntu-plucky-amd64-server-20250306.img (UUID 60d877d7-b74c-4f24-920d-f4570db0a338)... 248s nova [W] Timed out waiting for fe1d7fd7-1f08-483f-9694-058f0315cbb1 to get deleted.