0s autopkgtest [21:59:29]: starting date and time: 2025-03-15 21:59:29+0000
  0s autopkgtest [21:59:29]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [21:59:29]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.nvmq9dov/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-impute --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@lcy02-6.secgroup --name adt-plucky-amd64-r-bioc-impute-20250315-215929-juju-7f2275-prod-proposed-migration-environment-15-b531d737-9caa-4c36-bb6f-d30c55a24546 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 61s autopkgtest [22:00:30]: testbed dpkg architecture: amd64
 61s autopkgtest [22:00:30]: testbed apt version: 2.9.31ubuntu1
 61s autopkgtest [22:00:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 61s autopkgtest [22:00:30]: testbed release detected to be: None
 62s autopkgtest [22:00:31]: updating testbed package index (apt update)
 62s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
 62s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 62s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 62s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 62s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB]
 62s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB]
 62s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB]
 62s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB]
 62s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB]
 62s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B]
 62s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B]
 62s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB]
 62s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB]
 62s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB]
 62s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB]
 62s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B]
 62s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B]
 62s Fetched 1265 kB in 0s (5275 kB/s)
 63s Reading package lists...
 63s + lsb_release --codename --short
 63s + RELEASE=plucky
 63s + cat
 63s + [ plucky != trusty ]
 63s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade
 63s Reading package lists...
 64s Building dependency tree...
 64s Reading state information...
 64s Calculating upgrade...
 64s Calculating upgrade...
 65s The following package was automatically installed and is no longer required:
 65s   libnl-genl-3-200
 65s Use 'sudo apt autoremove' to remove it.
 65s The following NEW packages will be installed:
 65s   bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10
 65s   linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic
 65s   linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic
 65s   linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids
 65s The following packages will be upgraded:
 65s   apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu
 65s   cloud-init cloud-init-base curl dosfstools fwupd gir1.2-girepository-2.0
 65s   gir1.2-glib-2.0 htop hwdata libapparmor1 libapt-pkg7.0 libaudit-common
 65s   libaudit1 libbinutils libbrotli1 libcap-ng0 libctf-nobfd0 libctf0
 65s   libcurl3t64-gnutls libcurl4t64 libestr0 libfwupd3 libgirepository-1.0-1
 65s   libglib2.0-0t64 libglib2.0-data libgprofng0 libjemalloc2 liblz4-1 liblzma5
 65s   libmm-glib0 libncurses6 libncursesw6 libnl-3-200 libnl-genl-3-200
 65s   libnl-route-3-200 libpci3 libpython3-stdlib libpython3.13
 65s   libpython3.13-minimal libpython3.13-stdlib libselinux1 libsframe1
 65s   libsqlite3-0 libtinfo6 libxml2 linux-firmware linux-generic
 65s   linux-headers-generic linux-headers-virtual linux-image-generic
 65s   linux-image-virtual linux-libc-dev linux-tools-common linux-virtual
 65s   media-types ncurses-base ncurses-bin ncurses-term pci.ids pciutils
 65s   pinentry-curses python-apt-common python3 python3-apt python3-cffi-backend
 65s   python3-dbus python3-gi python3-jinja2 python3-lazr.uri python3-markupsafe
 65s   python3-minimal python3-systemd python3-yaml python3.13 python3.13-gdbm
 65s   python3.13-minimal rsync rsyslog strace xz-utils
 65s 86 upgraded, 12 newly installed, 0 to remove and 0 not upgraded.
 65s Need to get 807 MB of archives.
 65s After this operation, 326 MB of additional disk space will be used.
 65s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB]
 65s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB]
 65s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB]
 65s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB]
 65s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB]
 65s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB]
 65s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB]
 65s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB]
 65s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB]
 65s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB]
 65s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB]
 65s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB]
 65s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB]
 65s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB]
 65s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB]
 65s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB]
 65s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB]
 65s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB]
 65s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB]
 65s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB]
 65s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB]
 65s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB]
 65s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB]
 65s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B]
 65s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB]
 65s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB]
 65s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB]
 65s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB]
 65s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB]
 65s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB]
 65s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB]
 65s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB]
 65s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B]
 65s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB]
 65s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB]
 65s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB]
 65s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB]
 65s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB]
 65s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB]
 65s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB]
 65s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB]
 65s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB]
 65s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB]
 65s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB]
 65s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB]
 65s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB]
 65s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB]
 65s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB]
 65s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB]
 65s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB]
 65s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB]
 65s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB]
 65s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB]
 65s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB]
 65s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB]
 65s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB]
 65s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB]
 65s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB]
 65s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB]
 65s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB]
 65s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B]
 65s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB]
 65s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB]
 65s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB]
 65s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB]
 65s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
 65s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB]
 66s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB]
 66s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB]
 66s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB]
 66s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB]
 66s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB]
 66s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB]
 66s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB]
 66s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB]
 66s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB]
 66s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB]
 66s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB]
 70s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB]
 70s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB]
 70s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB]
 71s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B]
 71s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB]
 71s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B]
 71s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB]
 71s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B]
 71s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB]
 71s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB]
 71s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB]
 71s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB]
 71s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB]
 71s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB]
 71s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B]
 71s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB]
 71s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB]
 71s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB]
 71s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB]
 71s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B]
 72s Preconfiguring packages ...
 72s Fetched 807 MB in 7s (121 MB/s)
 72s (Reading database ... 
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(Reading database ... 109138 files and directories currently installed.)
 72s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ...
 72s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ...
 72s Setting up ncurses-bin (6.5+20250216-2) ...
 72s (Reading database ... 
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(Reading database ... 109138 files and directories currently installed.)
 72s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ...
 72s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ...
 72s Setting up ncurses-base (6.5+20250216-2) ...
 72s (Reading database ... 
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(Reading database ... 109138 files and directories currently installed.)
 72s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ...
 72s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ...
 73s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ...
 73s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ...
 73s Setting up liblz4-1:amd64 (1.10.0-4) ...
 73s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 109138 files and directories currently installed.)
 73s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ...
 73s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ...
 73s Setting up liblzma5:amd64 (5.6.4-1) ...
 73s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 109138 files and directories currently installed.)
 73s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ...
 73s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ...
 73s Setting up libapt-pkg7.0:amd64 (2.9.33) ...
 73s (Reading database ... 
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 90s Installing new version of config file /etc/mime.types ...
 90s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ...
 90s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ...
 90s Setting up pci.ids (0.0~2025.03.09-1) ...
 90s Setting up apt-utils (2.9.33) ...
 90s Setting up libdebuginfod-common (0.192-4) ...
 90s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ...
 90s Setting up bpftool (7.6.0+6.14.0-10.10) ...
 90s Setting up libestr0:amd64 (0.1.11-2) ...
 90s Setting up libbrotli1:amd64 (1.1.0-2build4) ...
 90s Setting up libsqlite3-0:amd64 (3.46.1-2) ...
 90s Setting up dosfstools (4.2-1.2) ...
 90s Setting up rsyslog (8.2412.0-2ubuntu2) ...
 90s info: The user `syslog' is already a member of `adm'.
 91s Setting up binutils-common:amd64 (2.44-3ubuntu1) ...
 91s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ...
 91s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ...
 91s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ...
 91s Setting up linux-headers-generic (6.14.0-10.10) ...
 91s Setting up libjemalloc2:amd64 (5.3.0-3) ...
 91s Setting up libsframe1:amd64 (2.44-3ubuntu1) ...
 91s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ...
 91s Setting up apparmor (4.1.0~beta5-0ubuntu8) ...
 92s Installing new version of config file /etc/apparmor.d/openvpn ...
 92s Reloading AppArmor profiles 
 94s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ...
 94s No schema files found: doing nothing.
 94s Setting up libglib2.0-data (2.84.0-1) ...
 94s Setting up libncurses6:amd64 (6.5+20250216-2) ...
 94s Setting up strace (6.13+ds-1ubuntu1) ...
 94s Setting up xz-utils (5.6.4-1) ...
 94s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ...
 94s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ...
 96s Setting up libncursesw6:amd64 (6.5+20250216-2) ...
 96s Setting up libpci3:amd64 (1:3.13.0-2) ...
 96s Setting up python-apt-common (2.9.9build1) ...
 96s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ...
 96s Setting up pnp.ids (0.393-3) ...
 96s Setting up libnl-3-200:amd64 (3.7.0-1) ...
 96s Setting up python3.13-minimal (3.13.2-2) ...
 97s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ...
 97s Setting up libbinutils:amd64 (2.44-3ubuntu1) ...
 97s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ...
 97s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ...
 97s Setting up rsync (3.4.1+ds1-3) ...
 98s rsync.service is a disabled or a static unit not running, not starting it.
 98s Setting up python3.13-gdbm (3.13.2-2) ...
 98s Setting up libpython3-stdlib:amd64 (3.13.2-2) ...
 98s Setting up ncurses-term (6.5+20250216-2) ...
 98s Setting up libctf0:amd64 (2.44-3ubuntu1) ...
 98s Setting up libpython3.13:amd64 (3.13.2-2) ...
 98s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
 98s Setting up libdebuginfod1t64:amd64 (0.192-4) ...
 98s Setting up linux-headers-virtual (6.14.0-10.10) ...
 98s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ...
 98s Setting up python3.13 (3.13.2-2) ...
 99s Setting up htop (3.4.0-2) ...
 99s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ...
101s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic
101s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic
101s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic
101s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic
101s Setting up libfwupd3:amd64 (2.0.6-4) ...
101s Setting up python3 (3.13.2-2) ...
101s Setting up python3-markupsafe (2.1.5-1build4) ...
101s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ...
103s Setting up libnl-route-3-200:amd64 (3.7.0-1) ...
103s Setting up hwdata (0.393-3) ...
103s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
104s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ...
104s Setting up linux-perf (6.14.0-10.10) ...
104s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ...
104s Setting up python3-gi (3.50.0-4build1) ...
104s Setting up pciutils (1:3.13.0-2) ...
104s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ...
104s Setting up curl (8.12.1-3ubuntu1) ...
104s Setting up linux-image-virtual (6.14.0-10.10) ...
104s Setting up linux-tools-common (6.14.0-10.10) ...
104s Setting up fwupd (2.0.6-4) ...
104s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
104s fwupd.service is a disabled or a static unit not running, not starting it.
105s Setting up python3-systemd (235-1build6) ...
105s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ...
105s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ...
105s Setting up linux-image-generic (6.14.0-10.10) ...
105s Setting up python3-dbus (1.3.2-5build5) ...
105s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ...
105s Setting up linux-generic (6.14.0-10.10) ...
105s Setting up python3-apt (2.9.9build1) ...
105s Setting up python3-yaml (6.0.2-1build2) ...
105s Setting up python3-lazr.uri (1.0.6-6) ...
105s Setting up binutils (2.44-3ubuntu1) ...
105s Setting up cloud-init-base (25.1-0ubuntu3) ...
107s Setting up linux-virtual (6.14.0-10.10) ...
107s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ...
107s Setting up cloud-init (25.1-0ubuntu3) ...
107s Processing triggers for systemd (257.3-1ubuntu3) ...
107s Processing triggers for man-db (2.13.0-1) ...
108s Processing triggers for dbus (1.16.2-1ubuntu1) ...
108s Processing triggers for libc-bin (2.41-1ubuntu1) ...
108s Processing triggers for initramfs-tools (0.146ubuntu1) ...
108s update-initramfs: Generating /boot/initrd.img-6.12.0-16-generic
108s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
120s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ...
120s /etc/kernel/postinst.d/initramfs-tools:
120s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic
120s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
130s /etc/kernel/postinst.d/zz-update-grub:
130s Sourcing file `/etc/default/grub'
130s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
130s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
130s Generating grub configuration file ...
130s Found linux image: /boot/vmlinuz-6.14.0-10-generic
130s Found initrd image: /boot/initrd.img-6.14.0-10-generic
131s Found linux image: /boot/vmlinuz-6.12.0-16-generic
131s Found initrd image: /boot/initrd.img-6.12.0-16-generic
131s Found linux image: /boot/vmlinuz-6.11.0-8-generic
131s Found initrd image: /boot/initrd.img-6.11.0-8-generic
131s Warning: os-prober will not be executed to detect other bootable partitions.
131s Systems on them will not be added to the GRUB boot configuration.
131s Check GRUB_DISABLE_OS_PROBER documentation entry.
131s Adding boot menu entry for UEFI Firmware Settings ...
131s done
131s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref
131s + /usr/lib/apt/apt-helper analyze-pattern ?true
131s + uname -r
131s + sed s/\./\\./g
131s + running_kernel_pattern=^linux-.*6\.12\.0-16-generic.*
131s + apt list ?obsolete
131s + tail -n+2
131s + cut -d/ -f1
131s + grep -v ^linux-.*6\.12\.0-16-generic.*
132s + obsolete_pkgs=linux-headers-6.11.0-8-generic
132s linux-headers-6.11.0-8
132s linux-headers-6.12.0-16
132s linux-image-6.11.0-8-generic
132s linux-modules-6.11.0-8-generic
132s linux-tools-6.11.0-8-generic
132s linux-tools-6.11.0-8
132s linux-tools-6.12.0-16
132s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-headers-6.12.0-16 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 linux-tools-6.12.0-16
133s Reading package lists...
133s Building dependency tree...
133s Reading state information...
133s Solving dependencies...
133s The following packages will be REMOVED:
133s   libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib*
133s   libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
133s   linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic*
133s   linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic*
133s   linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16*
133s   linux-tools-6.12.0-16-generic*
133s 0 upgraded, 0 newly installed, 15 to remove and 5 not upgraded.
133s After this operation, 371 MB disk space will be freed.
134s (Reading database ... 
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(Reading database ... 148643 files and directories currently installed.)
134s Removing libnl-genl-3-200:amd64 (3.7.0-1) ...
134s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
134s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
134s Removing libpython3.12t64:amd64 (3.12.9-1) ...
134s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ...
134s Removing libnsl2:amd64 (1.3.0-3build3) ...
134s Removing libpython3.12-minimal:amd64 (3.12.9-1) ...
134s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
135s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
137s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ...
137s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ...
139s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ...
139s /etc/kernel/postrm.d/initramfs-tools:
139s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic
140s /etc/kernel/postrm.d/zz-update-grub:
140s Sourcing file `/etc/default/grub'
140s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
140s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
140s Generating grub configuration file ...
140s Found linux image: /boot/vmlinuz-6.14.0-10-generic
140s Found initrd image: /boot/initrd.img-6.14.0-10-generic
140s Found linux image: /boot/vmlinuz-6.12.0-16-generic
140s Found initrd image: /boot/initrd.img-6.12.0-16-generic
140s Warning: os-prober will not be executed to detect other bootable partitions.
140s Systems on them will not be added to the GRUB boot configuration.
140s Check GRUB_DISABLE_OS_PROBER documentation entry.
140s Adding boot menu entry for UEFI Firmware Settings ...
140s done
140s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
140s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ...
140s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ...
140s Processing triggers for libc-bin (2.41-1ubuntu1) ...
141s (Reading database ... 
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(Reading database ... 84830 files and directories currently installed.)
141s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ...
141s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ...
141s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
141s + grep -q trusty /etc/lsb-release
141s + [ ! -d /usr/share/doc/unattended-upgrades ]
141s + [ ! -d /usr/share/doc/lxd ]
141s + [ ! -d /usr/share/doc/lxd-client ]
141s + [ ! -d /usr/share/doc/snapd ]
141s + type iptables
141s + cat
141s + chmod 755 /etc/rc.local
141s + . /etc/rc.local
141s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu
141s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP
141s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP
141s + uname -m
141s + [ x86_64 = ppc64le ]
141s + [ -d /run/systemd/system ]
141s + systemd-detect-virt --quiet --vm
141s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/
141s + cat
141s + grep -q lz4 /etc/initramfs-tools/initramfs.conf
141s + echo COMPRESS=lz4
141s autopkgtest [22:01:50]: upgrading testbed (apt dist-upgrade and autopurge)
141s Reading package lists...
141s Building dependency tree...
141s Reading state information...
142s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
142s Starting 2 pkgProblemResolver with broken count: 0
142s Done
142s Entering ResolveByKeep
143s 
143s Calculating upgrade...
143s The following packages will be upgraded:
143s   libc-bin libc-dev-bin libc6 libc6-dev locales
143s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
143s Need to get 10.5 MB of archives.
143s After this operation, 1024 B of additional disk space will be used.
143s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB]
143s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB]
143s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB]
143s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB]
143s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB]
144s Preconfiguring packages ...
144s Fetched 10.5 MB in 0s (52.1 MB/s)
144s (Reading database ... 
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(Reading database ... 84827 files and directories currently installed.)
144s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ...
144s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
144s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ...
144s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
144s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ...
144s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
144s Setting up libc6:amd64 (2.41-1ubuntu2) ...
144s (Reading database ... 
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(Reading database ... 84827 files and directories currently installed.)
144s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ...
144s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
145s Setting up libc-bin (2.41-1ubuntu2) ...
145s (Reading database ... 
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(Reading database ... 84827 files and directories currently installed.)
145s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
145s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
145s Setting up locales (2.41-1ubuntu2) ...
146s Generating locales (this might take a while)...
147s   en_US.UTF-8... done
147s Generation complete.
147s Setting up libc-dev-bin (2.41-1ubuntu2) ...
147s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ...
147s Processing triggers for man-db (2.13.0-1) ...
148s Processing triggers for systemd (257.3-1ubuntu3) ...
149s Reading package lists...
149s Building dependency tree...
149s Reading state information...
149s Starting pkgProblemResolver with broken count: 0
150s Starting 2 pkgProblemResolver with broken count: 0
150s Done
150s Solving dependencies...
150s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
150s autopkgtest [22:01:59]: rebooting testbed after setup commands that affected boot
154s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
166s autopkgtest [22:02:15]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025
167s autopkgtest [22:02:16]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-impute
167s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-impute 1.80.0-2 (dsc) [2047 B]
167s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-impute 1.80.0-2 (tar) [642 kB]
167s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-impute 1.80.0-2 (diff) [2800 B]
168s gpgv: Signature made Sat Jan 11 16:49:09 2025 UTC
168s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
168s gpgv:                issuer "crusoe@debian.org"
168s gpgv: Can't check signature: No public key
168s dpkg-source: warning: cannot verify inline signature for ./r-bioc-impute_1.80.0-2.dsc: no acceptable signature found
168s autopkgtest [22:02:17]: testing package r-bioc-impute version 1.80.0-2
168s autopkgtest [22:02:17]: build not needed
169s autopkgtest [22:02:18]: test pkg-r-autopkgtest: preparing testbed
169s Reading package lists...
170s Building dependency tree...
170s Reading state information...
170s Starting pkgProblemResolver with broken count: 0
170s Starting 2 pkgProblemResolver with broken count: 0
170s Done
170s The following NEW packages will be installed:
170s   build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu
170s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
170s   g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14
170s   gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14
170s   gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8
170s   libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev
170s   libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5
170s   libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23
170s   libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8
170s   libjpeg8-dev liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3
170s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
170s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
170s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libquadmath0
170s   libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data
170s   libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7
170s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64
170s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
170s   r-bioc-biocgenerics r-bioc-impute unzip x11-common xdg-utils zip zlib1g-dev
171s 0 upgraded, 101 newly installed, 0 to remove and 0 not upgraded.
171s Need to get 145 MB of archives.
171s After this operation, 450 MB of additional disk space will be used.
171s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB]
171s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB]
171s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB]
172s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B]
172s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B]
172s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB]
172s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB]
172s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB]
172s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB]
172s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB]
172s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB]
172s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB]
173s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB]
173s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB]
173s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB]
173s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB]
173s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB]
173s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB]
173s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B]
173s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B]
173s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB]
173s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB]
173s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB]
173s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B]
173s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B]
173s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
173s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB]
173s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
173s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
173s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB]
173s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB]
173s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB]
173s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB]
173s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB]
173s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB]
174s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB]
174s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B]
174s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B]
174s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB]
174s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB]
174s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB]
174s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB]
174s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
174s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
174s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
174s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
174s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB]
174s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB]
174s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB]
174s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB]
174s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
174s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB]
174s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
174s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB]
174s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB]
174s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB]
174s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB]
174s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
174s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
174s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
174s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB]
174s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB]
174s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB]
174s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB]
174s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB]
174s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB]
174s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB]
174s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB]
174s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB]
174s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB]
174s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB]
174s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB]
174s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB]
174s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B]
174s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB]
174s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB]
174s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB]
174s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB]
174s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB]
174s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB]
174s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB]
174s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB]
174s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
174s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB]
174s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB]
174s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
174s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
174s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB]
174s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB]
174s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB]
174s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB]
174s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
174s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB]
174s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB]
174s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB]
174s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB]
174s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB]
174s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B]
174s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
174s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
174s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-impute amd64 1.80.0-2 [664 kB]
175s Preconfiguring packages ...
175s Fetched 145 MB in 4s (39.3 MB/s)
175s Selecting previously unselected package libisl23:amd64.
175s (Reading database ... 
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(Reading database ... 65%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 84827 files and directories currently installed.)
175s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ...
175s Unpacking libisl23:amd64 (0.27-1) ...
175s Selecting previously unselected package libmpc3:amd64.
175s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ...
175s Unpacking libmpc3:amd64 (1.3.1-1build2) ...
175s Selecting previously unselected package cpp-14-x86-64-linux-gnu.
175s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ...
175s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
175s Selecting previously unselected package cpp-14.
175s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ...
175s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
175s Selecting previously unselected package cpp-x86-64-linux-gnu.
175s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
175s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
175s Selecting previously unselected package cpp.
175s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ...
175s Unpacking cpp (4:14.2.0-1ubuntu1) ...
175s Selecting previously unselected package libcc1-0:amd64.
175s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ...
175s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ...
175s Selecting previously unselected package libgomp1:amd64.
175s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ...
175s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ...
175s Selecting previously unselected package libitm1:amd64.
175s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ...
175s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ...
175s Selecting previously unselected package libasan8:amd64.
175s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ...
175s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ...
176s Selecting previously unselected package liblsan0:amd64.
176s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ...
176s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ...
176s Selecting previously unselected package libtsan2:amd64.
176s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ...
176s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ...
176s Selecting previously unselected package libubsan1:amd64.
176s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ...
176s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ...
176s Selecting previously unselected package libhwasan0:amd64.
176s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ...
176s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ...
176s Selecting previously unselected package libquadmath0:amd64.
176s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ...
176s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ...
176s Selecting previously unselected package libgcc-14-dev:amd64.
176s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ...
176s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ...
176s Selecting previously unselected package gcc-14-x86-64-linux-gnu.
176s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ...
176s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
176s Selecting previously unselected package gcc-14.
176s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ...
176s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
176s Selecting previously unselected package gcc-x86-64-linux-gnu.
176s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
176s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
176s Selecting previously unselected package gcc.
176s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ...
176s Unpacking gcc (4:14.2.0-1ubuntu1) ...
176s Selecting previously unselected package libstdc++-14-dev:amd64.
176s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ...
176s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ...
177s Selecting previously unselected package g++-14-x86-64-linux-gnu.
177s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ...
177s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
177s Selecting previously unselected package g++-14.
177s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ...
177s Unpacking g++-14 (14.2.0-17ubuntu3) ...
177s Selecting previously unselected package g++-x86-64-linux-gnu.
177s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
177s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
177s Selecting previously unselected package g++.
177s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ...
177s Unpacking g++ (4:14.2.0-1ubuntu1) ...
177s Selecting previously unselected package build-essential.
177s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ...
177s Unpacking build-essential (12.10ubuntu1) ...
177s Selecting previously unselected package dctrl-tools.
177s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ...
177s Unpacking dctrl-tools (2.24-3build3) ...
177s Selecting previously unselected package fonts-dejavu-mono.
177s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ...
177s Unpacking fonts-dejavu-mono (2.37-8) ...
177s Selecting previously unselected package fonts-dejavu-core.
177s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ...
177s Unpacking fonts-dejavu-core (2.37-8) ...
177s Selecting previously unselected package fontconfig-config.
177s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ...
177s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
177s Selecting previously unselected package libfontconfig1:amd64.
177s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ...
177s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ...
177s Selecting previously unselected package fontconfig.
177s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ...
177s Unpacking fontconfig (2.15.0-2ubuntu1) ...
177s Selecting previously unselected package libgfortran5:amd64.
177s Preparing to unpack .../032-libgfortran5_15-20250222-0ubuntu1_amd64.deb ...
177s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ...
177s Selecting previously unselected package libgfortran-14-dev:amd64.
177s Preparing to unpack .../033-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ...
177s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ...
177s Selecting previously unselected package gfortran-14-x86-64-linux-gnu.
177s Preparing to unpack .../034-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ...
177s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
178s Selecting previously unselected package gfortran-14.
178s Preparing to unpack .../035-gfortran-14_14.2.0-17ubuntu3_amd64.deb ...
178s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
178s Selecting previously unselected package gfortran-x86-64-linux-gnu.
178s Preparing to unpack .../036-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
178s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
178s Selecting previously unselected package gfortran.
178s Preparing to unpack .../037-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ...
178s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
178s Selecting previously unselected package icu-devtools.
178s Preparing to unpack .../038-icu-devtools_76.1-1ubuntu2_amd64.deb ...
178s Unpacking icu-devtools (76.1-1ubuntu2) ...
178s Selecting previously unselected package libblas3:amd64.
178s Preparing to unpack .../039-libblas3_3.12.1-2_amd64.deb ...
178s Unpacking libblas3:amd64 (3.12.1-2) ...
178s Selecting previously unselected package libblas-dev:amd64.
178s Preparing to unpack .../040-libblas-dev_3.12.1-2_amd64.deb ...
178s Unpacking libblas-dev:amd64 (3.12.1-2) ...
178s Selecting previously unselected package libbz2-dev:amd64.
178s Preparing to unpack .../041-libbz2-dev_1.0.8-6_amd64.deb ...
178s Unpacking libbz2-dev:amd64 (1.0.8-6) ...
178s Selecting previously unselected package libpixman-1-0:amd64.
178s Preparing to unpack .../042-libpixman-1-0_0.44.0-3_amd64.deb ...
178s Unpacking libpixman-1-0:amd64 (0.44.0-3) ...
178s Selecting previously unselected package libxcb-render0:amd64.
178s Preparing to unpack .../043-libxcb-render0_1.17.0-2_amd64.deb ...
178s Unpacking libxcb-render0:amd64 (1.17.0-2) ...
178s Selecting previously unselected package libxcb-shm0:amd64.
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178s Unpacking libxcb-shm0:amd64 (1.17.0-2) ...
178s Selecting previously unselected package libxrender1:amd64.
178s Preparing to unpack .../045-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ...
178s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ...
178s Selecting previously unselected package libcairo2:amd64.
178s Preparing to unpack .../046-libcairo2_1.18.2-2_amd64.deb ...
178s Unpacking libcairo2:amd64 (1.18.2-2) ...
178s Selecting previously unselected package libdatrie1:amd64.
178s Preparing to unpack .../047-libdatrie1_0.2.13-3build1_amd64.deb ...
178s Unpacking libdatrie1:amd64 (0.2.13-3build1) ...
178s Selecting previously unselected package libdeflate0:amd64.
178s Preparing to unpack .../048-libdeflate0_1.23-1_amd64.deb ...
178s Unpacking libdeflate0:amd64 (1.23-1) ...
178s Selecting previously unselected package libdeflate-dev:amd64.
178s Preparing to unpack .../049-libdeflate-dev_1.23-1_amd64.deb ...
178s Unpacking libdeflate-dev:amd64 (1.23-1) ...
178s Selecting previously unselected package libgraphite2-3:amd64.
178s Preparing to unpack .../050-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ...
178s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
178s Selecting previously unselected package libharfbuzz0b:amd64.
178s Preparing to unpack .../051-libharfbuzz0b_10.2.0-1_amd64.deb ...
178s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ...
178s Selecting previously unselected package x11-common.
178s Preparing to unpack .../052-x11-common_1%3a7.7+23ubuntu3_all.deb ...
178s Unpacking x11-common (1:7.7+23ubuntu3) ...
178s Selecting previously unselected package libice6:amd64.
178s Preparing to unpack .../053-libice6_2%3a1.1.1-1_amd64.deb ...
178s Unpacking libice6:amd64 (2:1.1.1-1) ...
178s Selecting previously unselected package libicu-dev:amd64.
178s Preparing to unpack .../054-libicu-dev_76.1-1ubuntu2_amd64.deb ...
178s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ...
179s Selecting previously unselected package libjpeg-turbo8:amd64.
179s Preparing to unpack .../055-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ...
179s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
179s Selecting previously unselected package libjpeg-turbo8-dev:amd64.
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179s Selecting previously unselected package libjpeg8:amd64.
179s Preparing to unpack .../057-libjpeg8_8c-2ubuntu11_amd64.deb ...
179s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
179s Selecting previously unselected package libjpeg8-dev:amd64.
179s Preparing to unpack .../058-libjpeg8-dev_8c-2ubuntu11_amd64.deb ...
179s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ...
179s Selecting previously unselected package libjpeg-dev:amd64.
179s Preparing to unpack .../059-libjpeg-dev_8c-2ubuntu11_amd64.deb ...
179s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ...
179s Selecting previously unselected package liblapack3:amd64.
179s Preparing to unpack .../060-liblapack3_3.12.1-2_amd64.deb ...
179s Unpacking liblapack3:amd64 (3.12.1-2) ...
179s Selecting previously unselected package liblapack-dev:amd64.
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179s Unpacking liblapack-dev:amd64 (3.12.1-2) ...
179s Selecting previously unselected package liblerc4:amd64.
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179s Selecting previously unselected package libncurses-dev:amd64.
179s Preparing to unpack .../063-libncurses-dev_6.5+20250216-2_amd64.deb ...
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179s Selecting previously unselected package libthai0:amd64.
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179s Selecting previously unselected package libpango-1.0-0:amd64.
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179s Selecting previously unselected package libpangoft2-1.0-0:amd64.
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179s Selecting previously unselected package libpangocairo-1.0-0:amd64.
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179s Selecting previously unselected package libpaper2:amd64.
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179s Selecting previously unselected package libpkgconf3:amd64.
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179s Selecting previously unselected package zlib1g-dev:amd64.
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180s Selecting previously unselected package libpng-dev:amd64.
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180s Unpacking libpng-dev:amd64 (1.6.47-1) ...
180s Selecting previously unselected package libreadline-dev:amd64.
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180s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ...
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180s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ...
180s Selecting previously unselected package libwebp7:amd64.
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180s Unpacking libxft2:amd64 (2.3.6-1build1) ...
180s Selecting previously unselected package libxss1:amd64.
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180s Selecting previously unselected package zip.
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180s Unpacking zip (3.0-14ubuntu2) ...
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180s Preparing to unpack .../090-unzip_6.0-28ubuntu6_amd64.deb ...
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180s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
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180s Unpacking r-base-core (4.4.3-1) ...
181s Selecting previously unselected package liblzma-dev:amd64.
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181s Unpacking pkgconf:amd64 (1.8.1-4) ...
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181s Selecting previously unselected package r-bioc-biocgenerics.
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181s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
181s Setting up libpixman-1-0:amd64 (0.44.0-3) ...
181s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ...
181s Setting up libncurses-dev:amd64 (6.5+20250216-2) ...
181s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ...
181s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ...
181s Setting up libdatrie1:amd64 (0.2.13-3build1) ...
181s Setting up libxcb-render0:amd64 (1.17.0-2) ...
181s Setting up unzip (6.0-28ubuntu6) ...
181s Setting up x11-common (1:7.7+23ubuntu3) ...
181s Setting up libdeflate0:amd64 (1.23-1) ...
181s Setting up libxcb-shm0:amd64 (1.17.0-2) ...
181s Setting up libreadline-dev:amd64 (8.2-6) ...
181s Setting up libgomp1:amd64 (15-20250222-0ubuntu1) ...
181s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ...
181s Setting up libpcre2-16-0:amd64 (10.45-1) ...
181s Setting up zip (3.0-14ubuntu2) ...
181s Setting up libpcre2-32-0:amd64 (10.45-1) ...
181s Setting up libblas3:amd64 (3.12.1-2) ...
181s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
181s Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3) ...
181s Setting up libpkgconf3:amd64 (1.8.1-4) ...
181s Setting up libquadmath0:amd64 (15-20250222-0ubuntu1) ...
181s Setting up fonts-dejavu-mono (2.37-8) ...
181s Setting up libmpc3:amd64 (1.3.1-1build2) ...
181s Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ...
181s Setting up icu-devtools (76.1-1ubuntu2) ...
181s Setting up fonts-dejavu-core (2.37-8) ...
181s Setting up pkgconf-bin (1.8.1-4) ...
181s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
181s Setting up libgfortran5:amd64 (15-20250222-0ubuntu1) ...
181s Setting up libwebp7:amd64 (1.5.0-0.1) ...
181s Setting up liblzma-dev:amd64 (5.6.4-1) ...
181s Setting up libubsan1:amd64 (15-20250222-0ubuntu1) ...
181s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
181s Setting up libpcre2-posix3:amd64 (10.45-1) ...
181s Setting up libhwasan0:amd64 (15-20250222-0ubuntu1) ...
181s Setting up libasan8:amd64 (15-20250222-0ubuntu1) ...
181s Setting up libharfbuzz0b:amd64 (10.2.0-1) ...
181s Setting up libthai-data (0.1.29-2build1) ...
181s Setting up libxss1:amd64 (1:1.2.3-1build3) ...
181s Setting up libpaper2:amd64 (2.2.5-0.3) ...
182s Setting up libtsan2:amd64 (15-20250222-0ubuntu1) ...
182s Setting up libisl23:amd64 (0.27-1) ...
182s Setting up libdeflate-dev:amd64 (1.23-1) ...
182s Setting up libicu-dev:amd64 (76.1-1ubuntu2) ...
182s Setting up xdg-utils (1.2.1-2ubuntu1) ...
182s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
182s Setting up libcc1-0:amd64 (15-20250222-0ubuntu1) ...
182s Setting up liblsan0:amd64 (15-20250222-0ubuntu1) ...
182s Setting up libblas-dev:amd64 (3.12.1-2) ...
182s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
182s Setting up dctrl-tools (2.24-3build3) ...
182s Setting up libitm1:amd64 (15-20250222-0ubuntu1) ...
182s Setting up libbz2-dev:amd64 (1.0.8-6) ...
182s Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
182s Setting up libice6:amd64 (2:1.1.1-1) ...
182s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ...
182s Setting up liblapack3:amd64 (3.12.1-2) ...
182s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
182s Setting up libpcre2-dev:amd64 (10.45-1) ...
182s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
182s Setting up libpng-dev:amd64 (1.6.47-1) ...
182s Setting up libpaper-utils (2.2.5-0.3) ...
182s Setting up pkgconf:amd64 (1.8.1-4) ...
182s Setting up libthai0:amd64 (0.1.29-2build1) ...
182s Setting up liblapack-dev:amd64 (3.12.1-2) ...
182s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
182s Setting up cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
182s Setting up cpp-14 (14.2.0-17ubuntu3) ...
182s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ...
182s Setting up libfontconfig1:amd64 (2.15.0-2ubuntu1) ...
182s Setting up libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ...
182s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ...
182s Setting up libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ...
182s Setting up libsm6:amd64 (2:1.2.4-1) ...
182s Setting up cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
182s Setting up libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ...
182s Setting up fontconfig (2.15.0-2ubuntu1) ...
184s Regenerating fonts cache... done.
184s Setting up libxft2:amd64 (2.3.6-1build1) ...
184s Setting up libtk8.6:amd64 (8.6.16-1) ...
184s Setting up libpango-1.0-0:amd64 (1.56.2-1) ...
184s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ...
184s Setting up libcairo2:amd64 (1.18.2-2) ...
184s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ...
184s Setting up cpp (4:14.2.0-1ubuntu1) ...
184s Setting up gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
184s Setting up libpangoft2-1.0-0:amd64 (1.56.2-1) ...
184s Setting up libpangocairo-1.0-0:amd64 (1.56.2-1) ...
184s Setting up gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
184s Setting up gcc-14 (14.2.0-17ubuntu3) ...
184s Setting up gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
184s Setting up r-base-core (4.4.3-1) ...
184s Creating config file /etc/R/Renviron with new version
184s Setting up g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
184s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
184s Setting up g++-14 (14.2.0-17ubuntu3) ...
184s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
184s Setting up r-bioc-biocgenerics (0.52.0-2) ...
184s Setting up r-bioc-impute (1.80.0-2) ...
184s Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
184s Setting up gcc (4:14.2.0-1ubuntu1) ...
184s Setting up g++ (4:14.2.0-1ubuntu1) ...
184s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
184s Setting up build-essential (12.10ubuntu1) ...
184s Setting up gfortran (4:14.2.0-1ubuntu1) ...
184s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
184s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
184s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
184s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
184s Setting up r-base-dev (4.4.3-1) ...
184s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
184s Processing triggers for libc-bin (2.41-1ubuntu2) ...
184s Processing triggers for man-db (2.13.0-1) ...
186s Processing triggers for install-info (7.1.1-1) ...
187s autopkgtest [22:02:36]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
187s autopkgtest [22:02:36]: test pkg-r-autopkgtest: [-----------------------
187s Test: Try to load the R library impute
187s 
187s R version 4.4.3 (2025-02-28) -- "Trophy Case"
187s Copyright (C) 2025 The R Foundation for Statistical Computing
187s Platform: x86_64-pc-linux-gnu
187s 
187s R is free software and comes with ABSOLUTELY NO WARRANTY.
187s You are welcome to redistribute it under certain conditions.
187s Type 'license()' or 'licence()' for distribution details.
187s 
187s R is a collaborative project with many contributors.
187s Type 'contributors()' for more information and
187s 'citation()' on how to cite R or R packages in publications.
187s 
187s Type 'demo()' for some demos, 'help()' for on-line help, or
187s 'help.start()' for an HTML browser interface to help.
187s Type 'q()' to quit R.
187s 
187s > library('impute')
187s > 
187s > 
187s Other tests are currently unsupported!
187s They will be progressively added.
187s autopkgtest [22:02:36]: test pkg-r-autopkgtest: -----------------------]
187s autopkgtest [22:02:36]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
187s pkg-r-autopkgtest    PASS
188s autopkgtest [22:02:37]: @@@@@@@@@@@@@@@@@@@@ summary
188s pkg-r-autopkgtest    PASS
204s nova [W] Skipping flock for amd64
204s Creating nova instance adt-plucky-amd64-r-bioc-impute-20250315-215929-juju-7f2275-prod-proposed-migration-environment-15-b531d737-9caa-4c36-bb6f-d30c55a24546 from image adt/ubuntu-plucky-amd64-server-20250306.img (UUID 60d877d7-b74c-4f24-920d-f4570db0a338)...
204s nova [W] Timed out waiting for d359cd67-b334-431f-a3f2-77001c1c3957 to get deleted.