0s autopkgtest [21:59:18]: starting date and time: 2025-03-15 21:59:18+0000 0s autopkgtest [21:59:18]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [21:59:18]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.v604m1ih/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-hdf5array --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-3.secgroup --name adt-plucky-amd64-r-bioc-hdf5array-20250315-215918-juju-7f2275-prod-proposed-migration-environment-15-d1f31e89-063b-48c3-b6a3-41413f8f581b --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 52s autopkgtest [22:00:10]: testbed dpkg architecture: amd64 52s autopkgtest [22:00:10]: testbed apt version: 2.9.31ubuntu1 53s autopkgtest [22:00:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup 53s autopkgtest [22:00:11]: testbed release detected to be: None 54s autopkgtest [22:00:12]: updating testbed package index (apt update) 54s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 54s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 54s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 54s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 55s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 55s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 55s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 55s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 55s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 55s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 55s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 55s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 55s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 55s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 55s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 55s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 55s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 55s Fetched 1265 kB in 1s (1452 kB/s) 56s Reading package lists... 57s + lsb_release --codename --short 57s + RELEASE=plucky 57s + cat 57s + [ plucky != trusty ] 57s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 57s Reading package lists... 57s Building dependency tree... 57s Reading state information... 58s Calculating upgrade... 58s Calculating upgrade... 58s The following package was automatically installed and is no longer required: 58s libnl-genl-3-200 58s Use 'sudo apt autoremove' to remove it. 58s The following NEW packages will be installed: 58s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 58s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 58s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 58s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 58s The following packages will be upgraded: 58s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 58s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 58s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 58s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 58s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 58s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 58s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 58s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 58s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 58s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 58s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 58s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 58s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 58s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 58s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 58s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 58s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 58s parted pci.ids pciutils pinentry-curses python-apt-common python3 58s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 58s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 58s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 58s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 58s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 58s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 58s xz-utils 58s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 58s Need to get 829 MB of archives. 58s After this operation, 325 MB of additional disk space will be used. 58s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 59s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 59s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 59s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 59s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 59s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 59s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 59s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 59s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 59s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 59s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 59s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 59s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 59s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 59s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 59s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 59s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 59s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 59s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 59s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 59s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 59s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 59s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 59s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 59s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 59s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 59s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 59s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 59s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 59s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 59s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 60s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 60s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 60s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 60s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 60s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 60s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 60s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 60s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 60s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 60s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 60s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 60s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 60s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 60s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 60s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 60s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 60s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 60s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 60s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 60s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 60s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 60s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 60s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 60s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 60s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 60s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 60s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 60s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 60s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 60s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 60s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 60s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 60s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 60s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 60s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 60s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 60s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 60s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 60s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 60s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 60s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 60s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 60s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 60s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 60s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 60s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 60s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 60s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 60s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 60s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 60s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 60s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 60s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 60s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 60s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 60s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 60s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 60s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 60s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 60s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 60s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 60s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 60s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 60s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 61s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 61s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 61s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 61s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 61s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 61s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 61s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 61s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 61s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 61s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 61s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 61s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 61s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 61s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 87s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 87s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 87s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 87s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 87s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 87s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 87s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 87s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 89s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 89s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 94s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 94s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 94s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 94s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 94s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 94s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 94s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 94s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 94s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 95s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 95s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 95s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 95s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 95s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 95s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 95s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 95s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 95s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 95s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 95s Preconfiguring packages ... 95s Fetched 829 MB in 36s (22.8 MB/s) 96s (Reading database ... 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(1.0.6-6) over (1.0.6-5) ... 119s Preparing to unpack .../79-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ... 119s Unpacking python3-rpds-py (0.21.0-2ubuntu2) over (0.21.0-2ubuntu1) ... 119s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 119s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 119s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 119s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 119s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 119s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 119s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 119s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 119s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 119s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 119s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 119s Setting up media-types (13.0.0) ... 119s Installing new version of config file /etc/mime.types ... 119s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 119s Setting up ubuntu-kernel-accessories (1.549) ... 119s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 119s Setting up pci.ids (0.0~2025.03.09-1) ... 119s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 119s Setting up apt-utils (2.9.33) ... 119s Setting up libdebuginfod-common (0.192-4) ... 119s Setting up exfatprogs (1.2.8-1) ... 119s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 119s Setting up bpftool (7.6.0+6.14.0-10.10) ... 119s Setting up libestr0:amd64 (0.1.11-2) ... 119s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 119s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 119s Setting up dosfstools (4.2-1.2) ... 119s Setting up rsyslog (8.2412.0-2ubuntu2) ... 120s info: The user `syslog' is already a member of `adm'. 121s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 121s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 121s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 121s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 121s Setting up systemd (257.3-1ubuntu3) ... 121s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 121s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 121s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 122s Setting up libparted2t64:amd64 (3.6-5) ... 122s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 122s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 122s Setting up linux-headers-generic (6.14.0-10.10) ... 122s Setting up libjemalloc2:amd64 (5.3.0-3) ... 122s Setting up locales (2.41-1ubuntu1) ... 122s Installing new version of config file /etc/locale.alias ... 122s Generating locales (this might take a while)... 124s en_US.UTF-8... done 124s Generation complete. 124s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 124s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 124s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 124s Installing new version of config file /etc/apparmor.d/fusermount3 ... 124s Installing new version of config file /etc/apparmor.d/lsusb ... 124s Installing new version of config file /etc/apparmor.d/openvpn ... 125s Reloading AppArmor profiles 127s Setting up libftdi1-2:amd64 (1.5-8build1) ... 127s Setting up libglib2.0-data (2.84.0-1) ... 127s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 127s Setting up libncurses6:amd64 (6.5+20250216-2) ... 127s Setting up strace (6.13+ds-1ubuntu1) ... 127s Setting up xz-utils (5.6.4-1) ... 127s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 127s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 127s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 127s Setting up udev (257.3-1ubuntu3) ... 128s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 131s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 131s Setting up libpci3:amd64 (1:3.13.0-2) ... 131s Setting up whiptail (0.52.24-4ubuntu2) ... 131s Setting up python-apt-common (2.9.9build1) ... 131s Setting up pnp.ids (0.393-3) ... 131s Setting up libnl-3-200:amd64 (3.7.0-1) ... 131s Setting up python3.13-minimal (3.13.2-2) ... 131s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 131s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 131s Setting up libc-dev-bin (2.41-1ubuntu1) ... 131s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 131s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 131s Setting up rsync (3.4.1+ds1-3) ... 132s rsync.service is a disabled or a static unit not running, not starting it. 132s Setting up python3.13-gdbm (3.13.2-2) ... 132s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 132s Setting up systemd-resolved (257.3-1ubuntu3) ... 133s Setting up initramfs-tools-bin (0.146ubuntu1) ... 133s Setting up ncurses-term (6.5+20250216-2) ... 133s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 133s Setting up libpython3.13:amd64 (3.13.2-2) ... 133s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 133s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 133s Setting up systemd-sysv (257.3-1ubuntu3) ... 133s Setting up linux-headers-virtual (6.14.0-10.10) ... 133s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 133s Setting up python3.13 (3.13.2-2) ... 134s Setting up htop (3.4.0-2) ... 134s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 136s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 136s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 136s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 136s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 136s Setting up parted (3.6-5) ... 136s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 136s Setting up python3 (3.13.2-2) ... 136s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 136s Setting up python3-markupsafe (2.1.5-1build4) ... 136s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 139s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 139s Setting up hwdata (0.393-3) ... 139s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 139s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 139s No schema files found: doing nothing. 139s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 139s Setting up linux-perf (6.14.0-10.10) ... 139s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 139s Setting up pciutils (1:3.13.0-2) ... 139s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 139s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 139s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 139s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 139s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 139s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 139s Setting up curl (8.12.1-3ubuntu1) ... 139s Setting up linux-image-virtual (6.14.0-10.10) ... 139s Setting up initramfs-tools-core (0.146ubuntu1) ... 139s Setting up linux-tools-common (6.14.0-10.10) ... 139s Setting up python3-systemd (235-1build6) ... 139s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 139s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 139s Setting up linux-image-generic (6.14.0-10.10) ... 139s Setting up python3-dbus (1.3.2-5build5) ... 140s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 140s Setting up initramfs-tools (0.146ubuntu1) ... 140s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 140s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 140s update-initramfs: deferring update (trigger activated) 140s Setting up linux-generic (6.14.0-10.10) ... 140s Setting up ubuntu-minimal (1.549) ... 140s Setting up python3-apt (2.9.9build1) ... 140s Setting up python3-bcrypt (4.2.0-2.1build1) ... 140s Setting up python3-yaml (6.0.2-1build2) ... 140s Setting up libfwupd3:amd64 (2.0.6-4) ... 140s Setting up python3-lazr.uri (1.0.6-6) ... 140s Setting up binutils (2.44-3ubuntu1) ... 140s Setting up ubuntu-standard (1.549) ... 140s Setting up cloud-init-base (25.1-0ubuntu3) ... 142s Setting up linux-virtual (6.14.0-10.10) ... 142s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 142s Setting up python3-gi (3.50.0-4build1) ... 142s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 142s Setting up fwupd (2.0.6-4) ... 143s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 143s fwupd.service is a disabled or a static unit not running, not starting it. 143s Setting up cloud-init (25.1-0ubuntu3) ... 143s Processing triggers for man-db (2.13.0-1) ... 144s Processing triggers for dbus (1.16.2-1ubuntu1) ... 144s Processing triggers for shared-mime-info (2.4-5) ... 144s Warning: program compiled against libxml 212 using older 209 145s Processing triggers for libc-bin (2.41-1ubuntu1) ... 145s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 145s /etc/kernel/postinst.d/initramfs-tools: 145s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 145s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 156s /etc/kernel/postinst.d/zz-update-grub: 156s Sourcing file `/etc/default/grub' 156s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 156s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 156s Generating grub configuration file ... 156s Found linux image: /boot/vmlinuz-6.14.0-10-generic 156s Found initrd image: /boot/initrd.img-6.14.0-10-generic 156s Found linux image: /boot/vmlinuz-6.12.0-16-generic 156s Found initrd image: /boot/initrd.img-6.12.0-16-generic 157s Found linux image: /boot/vmlinuz-6.11.0-8-generic 157s Found initrd image: /boot/initrd.img-6.11.0-8-generic 157s Warning: os-prober will not be executed to detect other bootable partitions. 157s Systems on them will not be added to the GRUB boot configuration. 157s Check GRUB_DISABLE_OS_PROBER documentation entry. 157s Adding boot menu entry for UEFI Firmware Settings ... 157s done 157s Processing triggers for initramfs-tools (0.146ubuntu1) ... 157s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 157s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 168s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 168s + /usr/lib/apt/apt-helper analyze-pattern ?true 168s + uname -r 168s + sed s/\./\\./g 168s + running_kernel_pattern=^linux-.*6\.12\.0-16-generic.* 168s + apt list ?obsolete 168s + tail -n+2 168s + cut -d/ -f1 168s + grep -v ^linux-.*6\.12\.0-16-generic.* 170s + obsolete_pkgs=linux-headers-6.11.0-8-generic 170s linux-headers-6.11.0-8 170s linux-headers-6.12.0-16 170s linux-image-6.11.0-8-generic 170s linux-modules-6.11.0-8-generic 170s linux-tools-6.11.0-8-generic 170s linux-tools-6.11.0-8 170s linux-tools-6.12.0-16 170s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-headers-6.12.0-16Reading package lists... 170s Building dependency tree... linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 linux-tools-6.12.0-16 170s 170s Reading state information... 170s Solving dependencies... 170s The following packages will be REMOVED: 170s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 170s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 170s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 170s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 170s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 170s linux-tools-6.12.0-16-generic* 170s 0 upgraded, 0 newly installed, 15 to remove and 5 not upgraded. 170s After this operation, 371 MB disk space will be freed. 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 171s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 171s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 171s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 171s Removing libpython3.12t64:amd64 (3.12.9-1) ... 171s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 171s Removing libnsl2:amd64 (1.3.0-3build3) ... 171s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 171s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 171s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 173s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 174s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 176s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 176s /etc/kernel/postrm.d/initramfs-tools: 176s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 176s /etc/kernel/postrm.d/zz-update-grub: 176s Sourcing file `/etc/default/grub' 176s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 176s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 176s Generating grub configuration file ... 176s Found linux image: /boot/vmlinuz-6.14.0-10-generic 176s Found initrd image: /boot/initrd.img-6.14.0-10-generic 177s Found linux image: /boot/vmlinuz-6.12.0-16-generic 177s Found initrd image: /boot/initrd.img-6.12.0-16-generic 177s Warning: os-prober will not be executed to detect other bootable partitions. 177s Systems on them will not be added to the GRUB boot configuration. 177s Check GRUB_DISABLE_OS_PROBER documentation entry. 177s Adding boot menu entry for UEFI Firmware Settings ... 177s done 177s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 177s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 177s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 177s Processing triggers for libc-bin (2.41-1ubuntu1) ... 177s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84830 files and directories currently installed.) 177s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 177s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 177s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 178s + grep -q trusty /etc/lsb-release 178s + [ ! -d /usr/share/doc/unattended-upgrades ] 178s + [ ! -d /usr/share/doc/lxd ] 178s + [ ! -d /usr/share/doc/lxd-client ] 178s + [ ! -d /usr/share/doc/snapd ] 178s + type iptables 178s + cat 178s + chmod 755 /etc/rc.local 178s + . /etc/rc.local 178s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 178s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 178s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 178s + uname -m 178s + [ x86_64 = ppc64le ] 178s + [ -d /run/systemd/system ] 178s + systemd-detect-virt --quiet --vm 178s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 178s + cat 178s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 178s + echo COMPRESS=lz4 178s autopkgtest [22:02:16]: upgrading testbed (apt dist-upgrade and autopurge) 178s Reading package lists... 178s Building dependency tree... 178s Reading state information... 178s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 178s Starting 2 pkgProblemResolver with broken count: 0 178s Done 179s Entering ResolveByKeep 179s 179s Calculating upgrade... 179s The following packages will be upgraded: 179s libc-bin libc-dev-bin libc6 libc6-dev locales 180s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 180s Need to get 10.5 MB of archives. 180s After this operation, 1024 B of additional disk space will be used. 180s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 180s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 180s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 180s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 180s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 181s Preconfiguring packages ... 181s Fetched 10.5 MB in 1s (10.2 MB/s) 181s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 181s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 181s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 181s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 181s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 181s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 181s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 181s Setting up libc6:amd64 (2.41-1ubuntu2) ... 182s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 182s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 182s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 182s Setting up libc-bin (2.41-1ubuntu2) ... 182s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 182s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 182s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 182s Setting up locales (2.41-1ubuntu2) ... 183s Generating locales (this might take a while)... 184s en_US.UTF-8... done 184s Generation complete. 184s Setting up libc-dev-bin (2.41-1ubuntu2) ... 184s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 184s Processing triggers for man-db (2.13.0-1) ... 185s Processing triggers for systemd (257.3-1ubuntu3) ... 186s Reading package lists... 186s Building dependency tree... 186s Reading state information... 187s Starting pkgProblemResolver with broken count: 0 187s Starting 2 pkgProblemResolver with broken count: 0 187s Done 187s Solving dependencies... 187s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 187s autopkgtest [22:02:25]: rebooting testbed after setup commands that affected boot 210s autopkgtest [22:02:48]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 213s autopkgtest [22:02:51]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-hdf5array 215s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-hdf5array 1.34.0-2build1 (dsc) [2379 B] 215s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-hdf5array 1.34.0-2build1 (tar) [8107 kB] 215s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-hdf5array 1.34.0-2build1 (diff) [6648 B] 216s gpgv: Signature made Tue Jan 28 09:40:27 2025 UTC 216s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 216s gpgv: Can't check signature: No public key 216s dpkg-source: warning: cannot verify inline signature for ./r-bioc-hdf5array_1.34.0-2build1.dsc: no acceptable signature found 216s autopkgtest [22:02:54]: testing package r-bioc-hdf5array version 1.34.0-2build1 218s autopkgtest [22:02:56]: build not needed 221s autopkgtest [22:02:59]: test pkg-r-autopkgtest: preparing testbed 221s Reading package lists... 222s Building dependency tree... 222s Reading state information... 222s Starting pkgProblemResolver with broken count: 0 222s Starting 2 pkgProblemResolver with broken count: 0 222s Done 223s The following NEW packages will be installed: 223s build-essential comerr-dev cpp cpp-14 cpp-14-x86-64-linux-gnu 223s cpp-x86-64-linux-gnu dctrl-tools fontconfig fontconfig-config 223s fonts-dejavu-core fonts-dejavu-mono g++ g++-14 g++-14-x86-64-linux-gnu 223s g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu 223s gfortran gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu 223s hdf5-helpers icu-devtools krb5-multidev libaec-dev libaec0 libasan8 223s libblas-dev libblas3 libblosc1 libboost-dev libboost1.83-dev libbrotli-dev 223s libbz2-dev libcairo2 libcc1-0 libcurl4-openssl-dev libdatrie1 libdeflate-dev 223s libdeflate0 libevent-2.1-7t64 libfontconfig1 libgcc-14-dev 223s libgfortran-14-dev libgfortran5 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 223s libgnutls-openssl27t64 libgnutls28-dev libgomp1 libgraphite2-3 libgssrpc4t64 223s libharfbuzz0b libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 223s libhdf5-hl-310 libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libhwasan0 libice6 223s libicu-dev libidn2-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 223s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkadm5clnt-mit12 223s libkadm5srv-mit12 libkdb5-10t64 libkrb5-dev liblapack-dev liblapack3 223s libldap-dev liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev 223s libnghttp2-dev libp11-kit-dev libpango-1.0-0 libpangocairo-1.0-0 223s libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 223s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpsl-dev 223s libquadmath0 libreadline-dev librtmp-dev libsharpyuv0 libsm6 libsnappy1v5 223s libssh2-1-dev libssl-dev libstdc++-14-dev libsz2 libtasn1-6-dev libtcl8.6 223s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 223s libunbound8 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 223s libxt6t64 libzstd-dev littler nettle-dev pkg-r-autopkgtest pkgconf 223s pkgconf-bin r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi 223s r-bioc-annotationhub r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 223s r-bioc-biocio r-bioc-biocparallel r-bioc-biocversion r-bioc-biostrings 223s r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-experimenthub 223s r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 223s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 223s r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 223s r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-rhtslib 223s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 223s r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats 223s r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 223s r-cran-abind r-cran-askpass r-cran-bh r-cran-biocmanager r-cran-bit 223s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli 223s r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 223s r-cran-dbplyr r-cran-dplyr r-cran-fansi r-cran-fastmap r-cran-filelock 223s r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics 223s r-cran-glue r-cran-httr r-cran-jsonlite r-cran-lambda.r r-cran-lattice 223s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix 223s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 223s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-purrr 223s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 223s r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-runit r-cran-snow 223s r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble 223s r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr 223s r-cran-xml r-cran-xtable r-cran-yaml unzip x11-common xdg-utils zip 223s zlib1g-dev 223s 0 upgraded, 246 newly installed, 0 to remove and 0 not upgraded. 223s Need to get 292 MB of archives. 223s After this operation, 864 MB of additional disk space will be used. 223s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 223s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 223s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 224s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 224s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 224s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 224s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 224s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 224s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 224s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 224s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 224s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 224s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 224s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 224s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 224s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 224s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 226s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 226s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 226s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 226s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 226s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 226s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 226s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 226s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 226s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 226s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 226s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 226s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 226s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 226s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 226s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 226s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 226s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 226s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 227s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 227s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 227s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 227s Get:39 http://ftpmaster.internal/ubuntu plucky/universe amd64 hdf5-helpers amd64 1.14.5+repack-3 [17.0 kB] 227s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 227s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 comerr-dev amd64 2.1-1.47.2-1ubuntu1 [44.9 kB] 227s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libgssrpc4t64 amd64 1.21.3-4ubuntu2 [58.1 kB] 227s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libkadm5clnt-mit12 amd64 1.21.3-4ubuntu2 [41.3 kB] 227s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libkdb5-10t64 amd64 1.21.3-4ubuntu2 [42.0 kB] 227s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libkadm5srv-mit12 amd64 1.21.3-4ubuntu2 [55.5 kB] 227s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 krb5-multidev amd64 1.21.3-4ubuntu2 [125 kB] 227s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 227s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 227s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 227s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB] 227s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB] 227s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB] 228s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 228s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli-dev amd64 1.1.0-2build4 [381 kB] 228s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 228s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 228s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 228s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 228s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 228s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 228s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libidn2-dev amd64 2.3.7-2build2 [120 kB] 228s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libkrb5-dev amd64 1.21.3-4ubuntu2 [11.9 kB] 228s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libldap-dev amd64 2.6.9+dfsg-1~exp2ubuntu1 [335 kB] 228s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 228s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 228s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 228s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libnghttp2-dev amd64 1.64.0-1 [123 kB] 228s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libpsl-dev amd64 0.21.2-1.1build1 [76.4 kB] 228s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3ubuntu1 [10.0 kB] 228s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3ubuntu1 [341 kB] 228s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10 [144 kB] 228s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libunbound8 amd64 1.22.0-1ubuntu1 [519 kB] 228s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-dane0t64 amd64 3.8.9-2ubuntu2 [24.4 kB] 228s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2ubuntu2 [24.6 kB] 228s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libp11-kit-dev amd64 0.25.5-2ubuntu3 [23.5 kB] 228s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libtasn1-6-dev amd64 4.20.0-2 [98.1 kB] 228s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 nettle-dev amd64 3.10.1-1 [1187 kB] 228s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls28-dev amd64 3.8.9-2ubuntu2 [1118 kB] 228s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 228s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2build7 [66.7 kB] 228s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libssl-dev amd64 3.4.1-1ubuntu1 [2873 kB] 228s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libssh2-1-dev amd64 1.11.1-1 [292 kB] 228s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [444 kB] 228s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4-openssl-dev amd64 8.12.1-3ubuntu1 [522 kB] 228s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 228s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 228s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 228s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 228s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 228s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 228s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 228s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-cpp-310 amd64 1.14.5+repack-3 [129 kB] 228s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-fortran-310 amd64 1.14.5+repack-3 [108 kB] 228s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 228s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-3 [32.4 kB] 228s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-3 [11.7 kB] 228s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 228s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 228s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 228s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 228s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 228s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec-dev amd64 1.1.3-1 [19.8 kB] 228s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-dev amd64 1.14.5+repack-3 [3505 kB] 229s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 229s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 229s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 230s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 230s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 230s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 230s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 230s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 230s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 230s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 230s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 230s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 230s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 230s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 230s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 230s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 230s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 230s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 230s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 230s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 230s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 230s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 230s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 230s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 230s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 230s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 230s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 230s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 230s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 230s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 230s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 230s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 230s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 230s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 231s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 231s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 231s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 231s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 231s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 231s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 231s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 231s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 231s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 231s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 231s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 231s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 231s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB] 231s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 231s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 231s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 231s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 231s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 231s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 231s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 231s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 231s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 231s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 231s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 231s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 231s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 231s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 231s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 231s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 231s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 231s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 231s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 231s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 231s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 231s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 231s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 231s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 231s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 231s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 232s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 232s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 232s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 232s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 232s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 232s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 232s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 232s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB] 232s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 232s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 232s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 232s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 232s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 232s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 232s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 232s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 232s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 233s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 233s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 233s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 233s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 233s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbplyr all 2.5.0+dfsg-1 [1233 kB] 233s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 233s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 233s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 233s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 233s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 233s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 233s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationhub all 3.14.0+dfsg-2 [447 kB] 233s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 233s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 233s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 233s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 233s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 233s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 233s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 233s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 233s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 233s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 233s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 234s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 234s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 234s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 234s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 234s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1392 kB] 234s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 234s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 234s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 234s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsematrixstats amd64 1.18.0+dfsg-2 [877 kB] 234s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedmatrixstats all 1.28.1+ds-1 [502 kB] 234s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-experimenthub all 2.14.0+ds-2 [84.6 kB] 234s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 234s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genefilter amd64 1.88.0-2 [1243 kB] 235s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 235s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 235s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB] 235s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 235s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 235s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 235s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 235s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 235s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 235s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB] 235s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 235s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5lib amd64 1.28.0+dfsg-2build1 [97.4 kB] 235s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5filters amd64 1.18.0+dfsg-2 [137 kB] 235s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5 amd64 2.50.2+dfsg-1build1 [822 kB] 235s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-hdf5array amd64 1.34.0-2build1 [8792 kB] 236s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-singlecellexperiment all 1.28.1+ds-2 [829 kB] 236s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 236s Preconfiguring packages ... 237s Fetched 292 MB in 13s (22.1 MB/s) 237s Selecting previously unselected package libisl23:amd64. 237s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 237s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 237s Unpacking libisl23:amd64 (0.27-1) ... 237s Selecting previously unselected package libmpc3:amd64. 237s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 237s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 237s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 237s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 237s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 237s Selecting previously unselected package cpp-14. 237s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 237s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 237s Selecting previously unselected package cpp-x86-64-linux-gnu. 237s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 237s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 237s Selecting previously unselected package cpp. 237s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 237s Unpacking cpp (4:14.2.0-1ubuntu1) ... 237s Selecting previously unselected package libcc1-0:amd64. 237s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 237s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 237s Selecting previously unselected package libgomp1:amd64. 237s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 237s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 237s Selecting previously unselected package libitm1:amd64. 237s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 237s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 237s Selecting previously unselected package libasan8:amd64. 237s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 237s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 237s Selecting previously unselected package liblsan0:amd64. 237s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 237s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 237s Selecting previously unselected package libtsan2:amd64. 237s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 237s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 237s Selecting previously unselected package libubsan1:amd64. 237s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 237s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 238s Selecting previously unselected package libhwasan0:amd64. 238s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 238s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 238s Selecting previously unselected package libquadmath0:amd64. 238s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 238s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 238s Selecting previously unselected package libgcc-14-dev:amd64. 238s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 238s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 238s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 238s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 238s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 238s Selecting previously unselected package gcc-14. 238s 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previously unselected package libgfortran-14-dev:amd64. 239s Preparing to unpack .../033-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 239s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 239s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 239s Preparing to unpack .../034-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 239s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 240s Selecting previously unselected package gfortran-14. 240s Preparing to unpack .../035-gfortran-14_14.2.0-17ubuntu3_amd64.deb ... 240s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 240s Selecting previously unselected package gfortran-x86-64-linux-gnu. 240s Preparing to unpack .../036-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 240s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 240s Selecting previously unselected package gfortran. 240s Preparing to unpack .../037-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 240s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 240s Selecting previously unselected package hdf5-helpers. 240s Preparing to unpack .../038-hdf5-helpers_1.14.5+repack-3_amd64.deb ... 240s Unpacking hdf5-helpers (1.14.5+repack-3) ... 240s Selecting previously unselected package icu-devtools. 240s Preparing to unpack .../039-icu-devtools_76.1-1ubuntu2_amd64.deb ... 240s Unpacking icu-devtools (76.1-1ubuntu2) ... 240s Selecting previously unselected package comerr-dev:amd64. 240s Preparing to unpack .../040-comerr-dev_2.1-1.47.2-1ubuntu1_amd64.deb ... 240s Unpacking comerr-dev:amd64 (2.1-1.47.2-1ubuntu1) ... 240s Selecting previously unselected package libgssrpc4t64:amd64. 240s Preparing to unpack .../041-libgssrpc4t64_1.21.3-4ubuntu2_amd64.deb ... 240s Unpacking libgssrpc4t64:amd64 (1.21.3-4ubuntu2) ... 240s Selecting previously unselected package libkadm5clnt-mit12:amd64. 240s Preparing to unpack .../042-libkadm5clnt-mit12_1.21.3-4ubuntu2_amd64.deb ... 240s Unpacking libkadm5clnt-mit12:amd64 (1.21.3-4ubuntu2) ... 240s Selecting previously unselected package libkdb5-10t64:amd64. 240s Preparing to unpack .../043-libkdb5-10t64_1.21.3-4ubuntu2_amd64.deb ... 240s Unpacking libkdb5-10t64:amd64 (1.21.3-4ubuntu2) ... 240s Selecting previously unselected package libkadm5srv-mit12:amd64. 240s Preparing to unpack .../044-libkadm5srv-mit12_1.21.3-4ubuntu2_amd64.deb ... 240s Unpacking libkadm5srv-mit12:amd64 (1.21.3-4ubuntu2) ... 240s Selecting previously unselected package krb5-multidev:amd64. 240s Preparing to unpack .../045-krb5-multidev_1.21.3-4ubuntu2_amd64.deb ... 240s Unpacking krb5-multidev:amd64 (1.21.3-4ubuntu2) ... 240s Selecting previously unselected package libaec0:amd64. 240s Preparing to unpack .../046-libaec0_1.1.3-1_amd64.deb ... 240s Unpacking libaec0:amd64 (1.1.3-1) ... 240s Selecting previously unselected package libblas3:amd64. 240s Preparing to unpack .../047-libblas3_3.12.1-2_amd64.deb ... 240s Unpacking libblas3:amd64 (3.12.1-2) ... 240s Selecting previously unselected package libblas-dev:amd64. 240s Preparing to unpack .../048-libblas-dev_3.12.1-2_amd64.deb ... 240s Unpacking libblas-dev:amd64 (3.12.1-2) ... 240s Selecting previously unselected package libsnappy1v5:amd64. 240s Preparing to unpack .../049-libsnappy1v5_1.2.1-1_amd64.deb ... 240s Unpacking libsnappy1v5:amd64 (1.2.1-1) ... 240s Selecting previously unselected package libblosc1:amd64. 240s Preparing to unpack .../050-libblosc1_1.21.5+ds-1build1_amd64.deb ... 240s Unpacking libblosc1:amd64 (1.21.5+ds-1build1) ... 240s Selecting previously unselected package libboost1.83-dev:amd64. 240s Preparing to unpack .../051-libboost1.83-dev_1.83.0-4.1ubuntu2_amd64.deb ... 240s Unpacking libboost1.83-dev:amd64 (1.83.0-4.1ubuntu2) ... 242s Selecting previously unselected package libboost-dev:amd64. 242s Preparing to unpack .../052-libboost-dev_1.83.0.2ubuntu1_amd64.deb ... 242s Unpacking libboost-dev:amd64 (1.83.0.2ubuntu1) ... 242s Selecting previously unselected package 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(2:6.3.0+dfsg-3ubuntu1) ... 243s Selecting previously unselected package libgmp-dev:amd64. 243s Preparing to unpack .../069-libgmp-dev_2%3a6.3.0+dfsg-3ubuntu1_amd64.deb ... 243s Unpacking libgmp-dev:amd64 (2:6.3.0+dfsg-3ubuntu1) ... 243s Selecting previously unselected package libevent-2.1-7t64:amd64. 243s Preparing to unpack .../070-libevent-2.1-7t64_2.1.12-stable-10_amd64.deb ... 243s Unpacking libevent-2.1-7t64:amd64 (2.1.12-stable-10) ... 243s Selecting previously unselected package libunbound8:amd64. 243s Preparing to unpack .../071-libunbound8_1.22.0-1ubuntu1_amd64.deb ... 243s Unpacking libunbound8:amd64 (1.22.0-1ubuntu1) ... 243s Selecting previously unselected package libgnutls-dane0t64:amd64. 243s Preparing to unpack .../072-libgnutls-dane0t64_3.8.9-2ubuntu2_amd64.deb ... 243s Unpacking libgnutls-dane0t64:amd64 (3.8.9-2ubuntu2) ... 243s Selecting previously unselected package libgnutls-openssl27t64:amd64. 243s Preparing to unpack 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.../078-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 243s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 243s Selecting previously unselected package librtmp-dev:amd64. 243s Preparing to unpack .../079-librtmp-dev_2.4+20151223.gitfa8646d.1-2build7_amd64.deb ... 243s Unpacking librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2build7) ... 243s Selecting previously unselected package libssl-dev:amd64. 243s Preparing to unpack .../080-libssl-dev_3.4.1-1ubuntu1_amd64.deb ... 243s Unpacking libssl-dev:amd64 (3.4.1-1ubuntu1) ... 244s Selecting previously unselected package libssh2-1-dev:amd64. 244s Preparing to unpack .../081-libssh2-1-dev_1.11.1-1_amd64.deb ... 244s Unpacking libssh2-1-dev:amd64 (1.11.1-1) ... 244s Selecting previously unselected package libzstd-dev:amd64. 244s Preparing to unpack .../082-libzstd-dev_1.5.6+dfsg-2_amd64.deb ... 244s Unpacking libzstd-dev:amd64 (1.5.6+dfsg-2) ... 244s Selecting previously unselected package libcurl4-openssl-dev:amd64. 244s Preparing to unpack .../083-libcurl4-openssl-dev_8.12.1-3ubuntu1_amd64.deb ... 244s Unpacking libcurl4-openssl-dev:amd64 (8.12.1-3ubuntu1) ... 244s Selecting previously unselected package libdatrie1:amd64. 244s Preparing to unpack .../084-libdatrie1_0.2.13-3build1_amd64.deb ... 244s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 244s Selecting previously unselected package libdeflate0:amd64. 244s Preparing to unpack .../085-libdeflate0_1.23-1_amd64.deb ... 244s Unpacking libdeflate0:amd64 (1.23-1) ... 244s Selecting previously unselected package libdeflate-dev:amd64. 244s Preparing to unpack .../086-libdeflate-dev_1.23-1_amd64.deb ... 244s Unpacking libdeflate-dev:amd64 (1.23-1) ... 244s Selecting previously unselected package libgraphite2-3:amd64. 244s Preparing to unpack .../087-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 244s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 244s Selecting previously unselected package libharfbuzz0b:amd64. 244s Preparing to unpack .../088-libharfbuzz0b_10.2.0-1_amd64.deb ... 244s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 244s Selecting previously unselected package libsz2:amd64. 244s Preparing to unpack .../089-libsz2_1.1.3-1_amd64.deb ... 244s Unpacking libsz2:amd64 (1.1.3-1) ... 244s Selecting previously unselected package libhdf5-310:amd64. 244s Preparing to unpack .../090-libhdf5-310_1.14.5+repack-3_amd64.deb ... 244s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... 244s Selecting previously unselected package libhdf5-cpp-310:amd64. 244s Preparing to unpack .../091-libhdf5-cpp-310_1.14.5+repack-3_amd64.deb ... 244s Unpacking libhdf5-cpp-310:amd64 (1.14.5+repack-3) ... 244s Selecting previously unselected package libhdf5-fortran-310:amd64. 244s Preparing to unpack .../092-libhdf5-fortran-310_1.14.5+repack-3_amd64.deb ... 244s Unpacking libhdf5-fortran-310:amd64 (1.14.5+repack-3) ... 244s Selecting previously unselected package libhdf5-hl-310:amd64. 244s Preparing to unpack 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unselected package libjpeg8:amd64. 244s Preparing to unpack .../098-libjpeg8_8c-2ubuntu11_amd64.deb ... 244s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 244s Selecting previously unselected package libjpeg8-dev:amd64. 244s Preparing to unpack .../099-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 244s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 244s Selecting previously unselected package libjpeg-dev:amd64. 244s Preparing to unpack .../100-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 244s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 244s Selecting previously unselected package libaec-dev:amd64. 244s Preparing to unpack .../101-libaec-dev_1.1.3-1_amd64.deb ... 244s Unpacking libaec-dev:amd64 (1.1.3-1) ... 244s Selecting previously unselected package libhdf5-dev. 244s Preparing to unpack .../102-libhdf5-dev_1.14.5+repack-3_amd64.deb ... 244s Unpacking libhdf5-dev (1.14.5+repack-3) ... 244s Selecting previously unselected package x11-common. 244s Preparing to unpack .../103-x11-common_1%3a7.7+23ubuntu3_all.deb ... 244s Unpacking x11-common (1:7.7+23ubuntu3) ... 244s Selecting previously unselected package libice6:amd64. 244s Preparing to unpack .../104-libice6_2%3a1.1.1-1_amd64.deb ... 244s Unpacking libice6:amd64 (2:1.1.1-1) ... 245s Selecting previously unselected package libicu-dev:amd64. 245s Preparing to unpack .../105-libicu-dev_76.1-1ubuntu2_amd64.deb ... 245s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 245s Selecting previously unselected package liblapack3:amd64. 245s Preparing to unpack .../106-liblapack3_3.12.1-2_amd64.deb ... 245s Unpacking liblapack3:amd64 (3.12.1-2) ... 245s Selecting previously unselected package liblapack-dev:amd64. 245s Preparing to unpack .../107-liblapack-dev_3.12.1-2_amd64.deb ... 245s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 245s Selecting previously unselected package liblerc4:amd64. 245s Preparing to unpack .../108-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 245s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 245s Selecting previously unselected package libncurses-dev:amd64. 245s Preparing to unpack .../109-libncurses-dev_6.5+20250216-2_amd64.deb ... 245s Unpacking libncurses-dev:amd64 (6.5+20250216-2) ... 245s Selecting previously unselected package libthai-data. 245s Preparing to unpack .../110-libthai-data_0.1.29-2build1_all.deb ... 245s Unpacking libthai-data (0.1.29-2build1) ... 245s Selecting previously unselected package libthai0:amd64. 245s Preparing to unpack .../111-libthai0_0.1.29-2build1_amd64.deb ... 245s Unpacking libthai0:amd64 (0.1.29-2build1) ... 245s Selecting previously unselected package libpango-1.0-0:amd64. 245s Preparing to unpack .../112-libpango-1.0-0_1.56.2-1_amd64.deb ... 245s Unpacking libpango-1.0-0:amd64 (1.56.2-1) ... 245s Selecting previously unselected package libpangoft2-1.0-0:amd64. 245s Preparing to unpack .../113-libpangoft2-1.0-0_1.56.2-1_amd64.deb ... 245s Unpacking libpangoft2-1.0-0:amd64 (1.56.2-1) ... 245s Selecting previously unselected package libpangocairo-1.0-0:amd64. 245s Preparing to unpack .../114-libpangocairo-1.0-0_1.56.2-1_amd64.deb ... 245s Unpacking libpangocairo-1.0-0:amd64 (1.56.2-1) ... 245s Selecting previously unselected package libpaper2:amd64. 245s Preparing to unpack .../115-libpaper2_2.2.5-0.3_amd64.deb ... 245s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 245s Selecting previously unselected package libpaper-utils. 245s Preparing to unpack .../116-libpaper-utils_2.2.5-0.3_amd64.deb ... 245s Unpacking libpaper-utils (2.2.5-0.3) ... 245s Selecting previously unselected package libpcre2-16-0:amd64. 245s Preparing to unpack .../117-libpcre2-16-0_10.45-1_amd64.deb ... 245s Unpacking libpcre2-16-0:amd64 (10.45-1) ... 245s Selecting previously unselected package libpcre2-32-0:amd64. 245s Preparing to unpack .../118-libpcre2-32-0_10.45-1_amd64.deb ... 245s Unpacking libpcre2-32-0:amd64 (10.45-1) ... 245s Selecting previously unselected package libpcre2-posix3:amd64. 245s Preparing to unpack .../119-libpcre2-posix3_10.45-1_amd64.deb ... 245s Unpacking libpcre2-posix3:amd64 (10.45-1) ... 245s Selecting previously unselected package libpcre2-dev:amd64. 245s Preparing to unpack .../120-libpcre2-dev_10.45-1_amd64.deb ... 245s Unpacking libpcre2-dev:amd64 (10.45-1) ... 246s Selecting previously unselected package libpng-dev:amd64. 246s Preparing to unpack .../121-libpng-dev_1.6.47-1_amd64.deb ... 246s Unpacking libpng-dev:amd64 (1.6.47-1) ... 246s Selecting previously unselected package libreadline-dev:amd64. 246s Preparing to unpack .../122-libreadline-dev_8.2-6_amd64.deb ... 246s Unpacking libreadline-dev:amd64 (8.2-6) ... 246s Selecting previously unselected package libsharpyuv0:amd64. 246s Preparing to unpack .../123-libsharpyuv0_1.5.0-0.1_amd64.deb ... 246s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 246s Selecting previously unselected package libsm6:amd64. 246s Preparing to unpack .../124-libsm6_2%3a1.2.4-1_amd64.deb ... 246s Unpacking libsm6:amd64 (2:1.2.4-1) ... 246s Selecting previously unselected package libtcl8.6:amd64. 246s Preparing to unpack .../125-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 246s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 246s Selecting previously unselected package libjbig0:amd64. 246s Preparing to unpack .../126-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 246s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 246s Selecting previously unselected package libwebp7:amd64. 246s Preparing to unpack .../127-libwebp7_1.5.0-0.1_amd64.deb ... 246s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 246s Selecting previously unselected package libtiff6:amd64. 246s Preparing to unpack .../128-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 246s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 246s Selecting previously unselected package libxft2:amd64. 246s Preparing to unpack .../129-libxft2_2.3.6-1build1_amd64.deb ... 246s Unpacking libxft2:amd64 (2.3.6-1build1) ... 246s Selecting previously unselected package libxss1:amd64. 246s Preparing to unpack .../130-libxss1_1%3a1.2.3-1build3_amd64.deb ... 246s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 246s Selecting previously unselected package libtk8.6:amd64. 246s Preparing to unpack .../131-libtk8.6_8.6.16-1_amd64.deb ... 246s Unpacking libtk8.6:amd64 (8.6.16-1) ... 246s Selecting previously unselected package libxt6t64:amd64. 246s Preparing to unpack .../132-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 246s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 246s Selecting previously unselected package zip. 246s Preparing to unpack .../133-zip_3.0-14ubuntu2_amd64.deb ... 246s Unpacking zip (3.0-14ubuntu2) ... 246s Selecting previously unselected package unzip. 246s Preparing to unpack .../134-unzip_6.0-28ubuntu6_amd64.deb ... 246s Unpacking unzip (6.0-28ubuntu6) ... 246s Selecting previously unselected package xdg-utils. 246s Preparing to unpack .../135-xdg-utils_1.2.1-2ubuntu1_all.deb ... 246s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 246s Selecting previously unselected package r-base-core. 246s Preparing to unpack .../136-r-base-core_4.4.3-1_amd64.deb ... 246s Unpacking r-base-core (4.4.3-1) ... 246s Selecting previously unselected package r-cran-littler. 246s Preparing to unpack .../137-r-cran-littler_0.3.20-2_amd64.deb ... 246s Unpacking r-cran-littler (0.3.20-2) ... 247s Selecting previously unselected package littler. 247s Preparing to unpack .../138-littler_0.3.20-2_all.deb ... 247s Unpacking littler (0.3.20-2) ... 247s Selecting previously unselected package liblzma-dev:amd64. 247s Preparing to unpack .../139-liblzma-dev_5.6.4-1_amd64.deb ... 247s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 247s Selecting previously unselected package libtirpc-dev:amd64. 247s Preparing to unpack .../140-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 247s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 247s Selecting previously unselected package r-base-dev. 247s Preparing to unpack .../141-r-base-dev_4.4.3-1_all.deb ... 247s Unpacking r-base-dev (4.4.3-1) ... 247s Selecting previously unselected package pkg-r-autopkgtest. 247s Preparing to unpack .../142-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 247s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 247s Selecting previously unselected package r-bioc-biocgenerics. 247s Preparing to unpack .../143-r-bioc-biocgenerics_0.52.0-2_all.deb ... 247s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 247s Selecting previously unselected package r-bioc-biobase. 247s Preparing to unpack .../144-r-bioc-biobase_2.66.0-2_amd64.deb ... 247s Unpacking r-bioc-biobase (2.66.0-2) ... 247s Selecting previously unselected package r-bioc-s4vectors. 247s Preparing to unpack .../145-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 247s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 247s Selecting previously unselected package r-bioc-iranges. 247s Preparing to unpack .../146-r-bioc-iranges_2.40.1-2_amd64.deb ... 247s Unpacking r-bioc-iranges (2.40.1-2) ... 247s Selecting previously unselected package r-cran-dbi. 247s Preparing to unpack .../147-r-cran-dbi_1.2.3-1_all.deb ... 247s Unpacking r-cran-dbi (1.2.3-1) ... 247s Selecting previously unselected package r-cran-bit. 247s Preparing to unpack .../148-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 247s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 247s Selecting previously unselected package r-cran-bit64. 247s Preparing to unpack .../149-r-cran-bit64_4.6.0-1-1ubuntu2_amd64.deb ... 247s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 247s Selecting previously unselected package r-cran-rlang. 247s Preparing to unpack .../150-r-cran-rlang_1.1.5-1_amd64.deb ... 247s Unpacking r-cran-rlang (1.1.5-1) ... 247s Selecting previously unselected package r-cran-cli. 247s Preparing to unpack .../151-r-cran-cli_3.6.4-1_amd64.deb ... 247s Unpacking r-cran-cli (3.6.4-1) ... 247s Selecting previously unselected package r-cran-glue. 247s Preparing to unpack .../152-r-cran-glue_1.8.0-1_amd64.deb ... 247s Unpacking r-cran-glue (1.8.0-1) ... 247s Selecting previously unselected package r-cran-lifecycle. 247s Preparing to unpack .../153-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 247s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 247s Selecting previously unselected package r-cran-vctrs. 247s Preparing to unpack .../154-r-cran-vctrs_0.6.5-1_amd64.deb ... 247s Unpacking r-cran-vctrs (0.6.5-1) ... 247s Selecting previously unselected package r-cran-blob. 247s Preparing to unpack .../155-r-cran-blob_1.2.4-1_all.deb ... 247s Unpacking r-cran-blob (1.2.4-1) ... 247s Selecting previously unselected package r-cran-fastmap. 247s Preparing to unpack .../156-r-cran-fastmap_1.2.0-1_amd64.deb ... 247s Unpacking r-cran-fastmap (1.2.0-1) ... 247s Selecting previously unselected package r-cran-cachem. 247s Preparing to unpack .../157-r-cran-cachem_1.1.0-1_amd64.deb ... 247s Unpacking r-cran-cachem (1.1.0-1) ... 247s Selecting previously unselected package r-cran-memoise. 247s Preparing to unpack .../158-r-cran-memoise_2.0.1-1_all.deb ... 247s Unpacking r-cran-memoise (2.0.1-1) ... 247s Selecting previously unselected package r-cran-pkgconfig. 247s Preparing to unpack .../159-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 247s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 247s Selecting previously unselected package r-cran-plogr. 247s Preparing to unpack .../160-r-cran-plogr_0.2.0-3build1_all.deb ... 247s Unpacking r-cran-plogr (0.2.0-3build1) ... 247s Selecting previously unselected package r-cran-cpp11. 248s Preparing to unpack .../161-r-cran-cpp11_0.5.2-1_all.deb ... 248s Unpacking r-cran-cpp11 (0.5.2-1) ... 248s Selecting previously unselected package r-cran-rsqlite. 248s Preparing to unpack .../162-r-cran-rsqlite_2.3.9-1_amd64.deb ... 248s Unpacking r-cran-rsqlite (2.3.9-1) ... 248s Selecting previously unselected package r-cran-curl. 248s Preparing to unpack .../163-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 248s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 248s Selecting previously unselected package r-cran-jsonlite. 248s Preparing to unpack .../164-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 248s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 248s Selecting previously unselected package r-cran-mime. 248s Preparing to unpack .../165-r-cran-mime_0.12-2_amd64.deb ... 248s Unpacking r-cran-mime (0.12-2) ... 248s Selecting previously unselected package r-cran-sys. 248s Preparing to unpack .../166-r-cran-sys_3.4.3-1_amd64.deb ... 248s Unpacking r-cran-sys (3.4.3-1) ... 248s Selecting previously unselected package r-cran-askpass. 248s Preparing to unpack .../167-r-cran-askpass_1.2.1-1_amd64.deb ... 248s Unpacking r-cran-askpass (1.2.1-1) ... 248s Selecting previously unselected package r-cran-openssl. 248s Preparing to unpack .../168-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 248s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 248s Selecting previously unselected package r-cran-r6. 248s Preparing to unpack .../169-r-cran-r6_2.6.1-1_all.deb ... 248s Unpacking r-cran-r6 (2.6.1-1) ... 248s Selecting previously unselected package r-cran-httr. 248s Preparing to unpack .../170-r-cran-httr_1.4.7+dfsg-1_all.deb ... 248s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 248s Selecting previously unselected package r-cran-png. 248s Preparing to unpack .../171-r-cran-png_0.1-8-1build2_amd64.deb ... 248s Unpacking r-cran-png (0.1-8-1build2) ... 248s Selecting previously unselected package r-bioc-zlibbioc. 248s Preparing to unpack .../172-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 248s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 248s Selecting previously unselected package r-bioc-xvector. 248s Preparing to unpack .../173-r-bioc-xvector_0.46.0-2_amd64.deb ... 248s Unpacking r-bioc-xvector (0.46.0-2) ... 248s Selecting previously unselected package r-bioc-ucsc.utils. 248s Preparing to unpack .../174-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 248s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 248s Selecting previously unselected package r-bioc-genomeinfodbdata. 248s Preparing to unpack .../175-r-bioc-genomeinfodbdata_1.2.13-2_all.deb 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... 249s Selecting previously unselected package r-cran-xml. 249s Preparing to unpack .../181-r-cran-xml_3.99-0.18-1_amd64.deb ... 249s Unpacking r-cran-xml (3.99-0.18-1) ... 249s Selecting previously unselected package r-cran-xtable. 249s Preparing to unpack .../182-r-cran-xtable_1%3a1.8-4-2_all.deb ... 249s Unpacking r-cran-xtable (1:1.8-4-2) ... 249s Selecting previously unselected package r-bioc-annotate. 249s Preparing to unpack .../183-r-bioc-annotate_1.84.0+dfsg-2_all.deb ... 249s Unpacking r-bioc-annotate (1.84.0+dfsg-2) ... 249s Selecting previously unselected package r-cran-generics. 249s Preparing to unpack .../184-r-cran-generics_0.1.3-1_all.deb ... 249s Unpacking r-cran-generics (0.1.3-1) ... 249s Selecting previously unselected package r-cran-magrittr. 249s Preparing to unpack .../185-r-cran-magrittr_2.0.3-1_amd64.deb ... 249s Unpacking r-cran-magrittr (2.0.3-1) ... 249s Selecting previously unselected package r-cran-utf8. 249s Preparing to unpack .../186-r-cran-utf8_1.2.4-1_amd64.deb ... 249s Unpacking r-cran-utf8 (1.2.4-1) ... 249s Selecting previously unselected package r-cran-pillar. 249s Preparing to unpack .../187-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 249s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 249s Selecting previously unselected package r-cran-fansi. 249s Preparing to unpack .../188-r-cran-fansi_1.0.5-1_amd64.deb ... 249s Unpacking r-cran-fansi (1.0.5-1) ... 249s Selecting previously unselected package r-cran-tibble. 249s Preparing to unpack .../189-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 249s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 249s Selecting previously unselected package r-cran-withr. 249s Preparing to unpack .../190-r-cran-withr_3.0.2+dfsg-1_all.deb ... 249s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 249s Selecting previously unselected package r-cran-tidyselect. 249s Preparing to unpack .../191-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 249s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 249s Selecting previously unselected package r-cran-dplyr. 249s Preparing to unpack .../192-r-cran-dplyr_1.1.4-4_amd64.deb ... 249s Unpacking r-cran-dplyr (1.1.4-4) ... 249s Selecting previously unselected package r-cran-purrr. 249s Preparing to unpack .../193-r-cran-purrr_1.0.4-1_amd64.deb ... 249s Unpacking r-cran-purrr (1.0.4-1) ... 249s Selecting previously unselected package r-cran-stringi. 249s Preparing to unpack .../194-r-cran-stringi_1.8.4-1build1_amd64.deb ... 249s Unpacking r-cran-stringi (1.8.4-1build1) ... 249s Selecting previously unselected package r-cran-stringr. 249s Preparing to unpack .../195-r-cran-stringr_1.5.1-1_all.deb ... 249s Unpacking r-cran-stringr (1.5.1-1) ... 249s Selecting previously unselected package r-cran-tidyr. 249s Preparing to unpack .../196-r-cran-tidyr_1.3.1-1_amd64.deb ... 249s Unpacking r-cran-tidyr (1.3.1-1) ... 249s Selecting previously unselected package r-cran-dbplyr. 249s Preparing to unpack .../197-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ... 249s Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ... 249s Selecting previously unselected package r-cran-filelock. 249s Preparing to unpack .../198-r-cran-filelock_1.0.3-1_amd64.deb ... 249s Unpacking r-cran-filelock (1.0.3-1) ... 249s Selecting previously unselected package r-bioc-biocfilecache. 249s Preparing to unpack .../199-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 249s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 250s Selecting previously unselected package r-cran-biocmanager. 250s Preparing to unpack .../200-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 250s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 250s Selecting previously unselected package r-bioc-biocversion. 250s Preparing to unpack .../201-r-bioc-biocversion_3.20.0-2_all.deb ... 250s Unpacking r-bioc-biocversion (3.20.0-2) ... 250s Selecting previously unselected package r-cran-rappdirs. 250s Preparing to unpack .../202-r-cran-rappdirs_0.3.3-1_amd64.deb ... 250s Unpacking r-cran-rappdirs (0.3.3-1) ... 250s Selecting previously unselected package r-cran-yaml. 250s Preparing to unpack .../203-r-cran-yaml_2.3.10-1_amd64.deb ... 250s Unpacking r-cran-yaml (2.3.10-1) ... 250s Selecting previously unselected package r-bioc-annotationhub. 250s Preparing to unpack .../204-r-bioc-annotationhub_3.14.0+dfsg-2_all.deb ... 250s Unpacking r-bioc-annotationhub (3.14.0+dfsg-2) ... 250s Selecting previously unselected package r-bioc-biocio. 250s Preparing to unpack .../205-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 250s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 250s Selecting previously unselected package r-cran-formatr. 250s Preparing to unpack .../206-r-cran-formatr_1.14-2_all.deb ... 250s Unpacking r-cran-formatr (1.14-2) ... 250s Selecting previously unselected package r-cran-lambda.r. 250s Preparing to unpack .../207-r-cran-lambda.r_1.2.4-2build1_all.deb ... 250s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 250s Selecting previously unselected package r-cran-futile.options. 250s Preparing to unpack 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Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 252s Selecting previously unselected package r-bioc-rhdf5lib. 252s Preparing to unpack .../240-r-bioc-rhdf5lib_1.28.0+dfsg-2build1_amd64.deb ... 252s Unpacking r-bioc-rhdf5lib (1.28.0+dfsg-2build1) ... 252s Selecting previously unselected package r-bioc-rhdf5filters. 252s Preparing to unpack .../241-r-bioc-rhdf5filters_1.18.0+dfsg-2_amd64.deb ... 252s Unpacking r-bioc-rhdf5filters (1.18.0+dfsg-2) ... 252s Selecting previously unselected package r-bioc-rhdf5. 252s Preparing to unpack .../242-r-bioc-rhdf5_2.50.2+dfsg-1build1_amd64.deb ... 252s Unpacking r-bioc-rhdf5 (2.50.2+dfsg-1build1) ... 252s Selecting previously unselected package r-bioc-hdf5array. 252s Preparing to unpack .../243-r-bioc-hdf5array_1.34.0-2build1_amd64.deb ... 252s Unpacking r-bioc-hdf5array (1.34.0-2build1) ... 252s Selecting previously unselected package r-bioc-singlecellexperiment. 252s Preparing to unpack .../244-r-bioc-singlecellexperiment_1.28.1+ds-2_all.deb 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Setting up r-cran-rappdirs (0.3.3-1) ... 255s Setting up r-cran-filelock (1.0.3-1) ... 255s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 255s Setting up r-cran-littler (0.3.20-2) ... 255s Setting up r-cran-bh (1.84.0-1) ... 255s Setting up r-cran-rcpp (1.0.14-1) ... 255s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 255s Setting up r-cran-codetools (0.2-20-1) ... 255s Setting up r-bioc-biocgenerics (0.52.0-2) ... 255s Setting up r-cran-rlang (1.1.5-1) ... 255s Setting up r-cran-matrixstats (1.5.0-1) ... 255s Setting up littler (0.3.20-2) ... 255s Setting up r-bioc-matrixgenerics (1.18.1-1) ... 255s Setting up r-cran-sys (3.4.3-1) ... 255s Setting up r-cran-plogr (0.2.0-3build1) ... 255s Setting up r-cran-withr (3.0.2+dfsg-1) ... 255s Setting up r-cran-mime (0.12-2) ... 255s Setting up r-cran-generics (0.1.3-1) ... 255s Setting up r-cran-abind (1.4-8-1) ... 255s Setting up r-cran-yaml (2.3.10-1) ... 255s Setting up r-cran-lambda.r (1.2.4-2build1) ... 255s Setting up r-cran-dbi 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Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 255s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 255s Setting up r-cran-utf8 (1.2.4-1) ... 255s Setting up r-cran-stringi (1.8.4-1build1) ... 255s Setting up r-cran-cpp11 (0.5.2-1) ... 255s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 255s Setting up r-cran-runit (0.4.33-1) ... 255s Setting up r-cran-futile.logger (1.4.3-4build1) ... 255s Setting up r-cran-matrix (1.7-3-1) ... 255s Setting up g++ (4:14.2.0-1ubuntu1) ... 255s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 255s Setting up r-cran-cachem (1.1.0-1) ... 255s Setting up build-essential (12.10ubuntu1) ... 255s Setting up r-bioc-iranges (2.40.1-2) ... 255s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 255s Setting up r-cran-restfulr (0.0.15-1) ... 255s Setting up r-bioc-sparsematrixstats (1.18.0+dfsg-2) ... 255s Setting up r-cran-vctrs (0.6.5-1) ... 255s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 255s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 255s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 255s Setting up r-cran-stringr (1.5.1-1) ... 255s Setting up r-bioc-biocparallel (1.40.0-2) ... 255s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 255s Setting up r-bioc-rhdf5 (2.50.2+dfsg-1build1) ... 255s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 255s Setting up r-cran-survival (3.8-3-1) ... 255s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 255s Setting up gfortran (4:14.2.0-1ubuntu1) ... 255s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 255s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 255s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 255s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 255s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 255s Setting up r-cran-httr (1.4.7+dfsg-1) ... 255s Setting up r-cran-memoise (2.0.1-1) ... 255s Setting up r-cran-purrr (1.0.4-1) ... 255s Setting up r-cran-blob (1.2.4-1) ... 255s Setting up r-bioc-xvector (0.46.0-2) ... 255s Setting up r-cran-dplyr (1.1.4-4) ... 255s Setting up r-cran-rsqlite (2.3.9-1) ... 255s Setting up r-base-dev (4.4.3-1) ... 255s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 255s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 255s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 255s Setting up r-cran-tidyr (1.3.1-1) ... 255s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 255s Setting up r-cran-dbplyr (2.5.0+dfsg-1) ... 255s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 255s Setting up r-bioc-hdf5array (1.34.0-2build1) ... 255s Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ... 255s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 255s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 255s Setting up r-bioc-delayedmatrixstats (1.28.1+ds-1) ... 255s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 255s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 255s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 255s Setting up r-bioc-annotationdbi (1.68.0-2) ... 255s Setting up r-bioc-annotationhub (3.14.0+dfsg-2) ... 255s Setting up r-bioc-annotate (1.84.0+dfsg-2) ... 255s Setting up r-bioc-genefilter (1.88.0-2) ... 255s Setting up r-bioc-genomicalignments (1.42.0-2) ... 255s Setting up r-bioc-rtracklayer (1.66.0-2) ... 255s Setting up r-bioc-singlecellexperiment (1.28.1+ds-2) ... 255s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 255s Setting up r-bioc-experimenthub (2.14.0+ds-2) ... 255s Processing triggers for man-db (2.13.0-1) ... 258s Processing triggers for install-info (7.1.1-1) ... 258s Processing triggers for libc-bin (2.41-1ubuntu2) ... 258s autopkgtest [22:03:36]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 258s autopkgtest [22:03:36]: test pkg-r-autopkgtest: [----------------------- 259s Test: Try to load the R library HDF5Array 259s 259s R version 4.4.3 (2025-02-28) -- "Trophy Case" 259s Copyright (C) 2025 The R Foundation for Statistical Computing 259s Platform: x86_64-pc-linux-gnu 259s 259s R is free software and comes with ABSOLUTELY NO WARRANTY. 259s You are welcome to redistribute it under certain conditions. 259s Type 'license()' or 'licence()' for distribution details. 259s 259s R is a collaborative project with many contributors. 259s Type 'contributors()' for more information and 259s 'citation()' on how to cite R or R packages in publications. 259s 259s Type 'demo()' for some demos, 'help()' for on-line help, or 259s 'help.start()' for an HTML browser interface to help. 259s Type 'q()' to quit R. 259s 259s > library('HDF5Array') 259s Loading required package: SparseArray 259s Loading required package: Matrix 260s Loading required package: BiocGenerics 260s 260s Attaching package: ‘BiocGenerics’ 260s 260s The following objects are masked from ‘package:stats’: 260s 260s IQR, mad, sd, var, xtabs 260s 260s The following objects are masked from ‘package:base’: 260s 260s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 260s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 260s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 260s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 260s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 260s table, tapply, union, unique, unsplit, which.max, which.min 260s 260s Loading required package: MatrixGenerics 260s Loading required package: matrixStats 260s 260s Attaching package: ‘MatrixGenerics’ 260s 260s The following objects are masked from ‘package:matrixStats’: 260s 260s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 260s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 260s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 260s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 260s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 260s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 260s colWeightedMeans, colWeightedMedians, colWeightedSds, 260s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 260s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 260s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 260s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 260s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 260s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 260s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 260s rowWeightedSds, rowWeightedVars 260s 260s Loading required package: S4Vectors 260s Loading required package: stats4 260s 260s Attaching package: ‘S4Vectors’ 260s 260s The following objects are masked from ‘package:Matrix’: 260s 260s expand, unname 260s 260s The following object is masked from ‘package:utils’: 260s 260s findMatches 260s 260s The following objects are masked from ‘package:base’: 260s 260s expand.grid, I, unname 260s 260s Loading required package: S4Arrays 260s Loading required package: abind 260s Loading required package: IRanges 261s 261s Attaching package: ‘S4Arrays’ 261s 261s The following object is masked from ‘package:abind’: 261s 261s abind 261s 261s The following object is masked from ‘package:base’: 261s 261s rowsum 261s 262s Loading required package: DelayedArray 263s 263s Attaching package: ‘DelayedArray’ 263s 263s The following objects are masked from ‘package:base’: 263s 263s apply, scale, sweep 263s 263s Loading required package: rhdf5 263s > 263s > 263s 263s Attaching package: ‘HDF5Array’ 263s 263s The following object is masked from ‘package:rhdf5’: 263s 263s h5ls 263s 263s Other tests are currently unsupported! 263s They will be progressively added. 264s autopkgtest [22:03:42]: test pkg-r-autopkgtest: -----------------------] 264s autopkgtest [22:03:42]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 264s pkg-r-autopkgtest PASS 264s autopkgtest [22:03:42]: @@@@@@@@@@@@@@@@@@@@ summary 264s pkg-r-autopkgtest PASS 282s nova [W] Skipping flock for amd64 282s Creating nova instance adt-plucky-amd64-r-bioc-hdf5array-20250315-215918-juju-7f2275-prod-proposed-migration-environment-15-d1f31e89-063b-48c3-b6a3-41413f8f581b from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 282s nova [W] Timed out waiting for 94ae503e-3550-4e3f-ad93-b907e8c73726 to get deleted.