0s autopkgtest [21:59:17]: starting date and time: 2025-03-15 21:59:17+0000 0s autopkgtest [21:59:17]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [21:59:17]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.gyqahd00/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-gsva --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@lcy02-1.secgroup --name adt-plucky-amd64-r-bioc-gsva-20250315-215917-juju-7f2275-prod-proposed-migration-environment-15-a97ac9d9-9c8c-4e9b-9793-1cbe92254883 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 51s autopkgtest [22:00:08]: testbed dpkg architecture: amd64 51s autopkgtest [22:00:08]: testbed apt version: 2.9.31ubuntu1 51s autopkgtest [22:00:08]: @@@@@@@@@@@@@@@@@@@@ test bed setup 51s autopkgtest [22:00:08]: testbed release detected to be: None 51s autopkgtest [22:00:08]: updating testbed package index (apt update) 51s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 51s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 51s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 51s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 51s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 51s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 51s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 51s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 51s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 51s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 51s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 51s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 51s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 51s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 51s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 51s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 51s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 52s Fetched 1265 kB in 0s (6614 kB/s) 52s Reading package lists... 53s + lsb_release --codename --short 53s + RELEASE=plucky 53s + cat 53s + [ plucky != trusty ] 53s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 53s Calculating upgrade... 53s Calculating upgrade... 54s The following package was automatically installed and is no longer required: 54s libnl-genl-3-200 54s Use 'sudo apt autoremove' to remove it. 54s The following NEW packages will be installed: 54s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 54s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 54s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 54s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 54s The following packages will be upgraded: 54s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 54s cloud-init cloud-init-base curl dosfstools fwupd gir1.2-girepository-2.0 54s gir1.2-glib-2.0 htop hwdata libapparmor1 libapt-pkg7.0 libaudit-common 54s libaudit1 libbinutils libbrotli1 libcap-ng0 libctf-nobfd0 libctf0 54s libcurl3t64-gnutls libcurl4t64 libestr0 libfwupd3 libgirepository-1.0-1 54s libglib2.0-0t64 libglib2.0-data libgprofng0 libjemalloc2 liblz4-1 liblzma5 54s libmm-glib0 libncurses6 libncursesw6 libnl-3-200 libnl-genl-3-200 54s libnl-route-3-200 libpci3 libpython3-stdlib libpython3.13 54s libpython3.13-minimal libpython3.13-stdlib libselinux1 libsframe1 54s libsqlite3-0 libtinfo6 libxml2 linux-firmware linux-generic 54s linux-headers-generic linux-headers-virtual linux-image-generic 54s linux-image-virtual linux-libc-dev linux-tools-common linux-virtual 54s media-types ncurses-base ncurses-bin ncurses-term pci.ids pciutils 54s pinentry-curses python-apt-common python3 python3-apt python3-cffi-backend 54s python3-dbus python3-gi python3-jinja2 python3-lazr.uri python3-markupsafe 54s python3-minimal python3-systemd python3-yaml python3.13 python3.13-gdbm 54s python3.13-minimal rsync rsyslog strace xz-utils 54s 86 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 54s Need to get 807 MB of archives. 54s After this operation, 326 MB of additional disk space will be used. 54s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 54s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 54s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 54s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 54s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 54s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 54s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 54s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 54s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 54s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 54s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 54s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 54s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 54s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 54s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 54s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 54s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 54s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 54s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 54s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 54s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 54s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 54s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 54s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 54s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 54s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 54s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 54s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 54s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 54s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 54s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 54s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 54s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 54s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 54s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 54s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 54s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 54s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 54s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 54s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 54s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 54s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 54s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 54s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 54s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 54s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 54s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 54s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 54s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 54s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 54s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 54s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 54s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 54s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 54s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 54s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 54s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 54s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 54s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 54s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 54s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 54s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 54s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 54s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 54s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 54s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 54s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 54s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 54s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 54s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 54s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 54s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 54s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 54s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 54s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 54s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 54s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 54s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 58s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 58s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 58s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 59s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 59s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 59s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 59s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 59s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 59s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 59s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 59s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 59s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 59s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 60s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 60s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 60s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 60s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 60s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 60s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 60s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 60s Preconfiguring packages ... 60s Fetched 807 MB in 6s (138 MB/s) 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 60s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ... 60s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ... 60s Setting up ncurses-bin (6.5+20250216-2) ... 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 60s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... 60s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ... 60s Setting up ncurses-base (6.5+20250216-2) ... 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 61s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ... 61s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ... 61s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ... 61s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ... 61s Setting up liblz4-1:amd64 (1.10.0-4) ... 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 61s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ... 61s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ... 61s Setting up liblzma5:amd64 (5.6.4-1) ... 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 62s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 62s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 62s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 62s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 62s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 62s Setting up apt (2.9.33) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 63s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 63s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 63s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 63s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 63s Setting up python3-minimal (3.13.2-2) ... 63s (Reading database ... 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Preparing to unpack .../68-python3-systemd_235-1build6_amd64.deb ... 80s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 80s Preparing to unpack .../69-python3.13-gdbm_3.13.2-2_amd64.deb ... 80s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 80s Preparing to unpack .../70-cloud-init_25.1-0ubuntu3_all.deb ... 80s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 80s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 80s Setting up media-types (13.0.0) ... 80s Installing new version of config file /etc/mime.types ... 80s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 80s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 80s Setting up pci.ids (0.0~2025.03.09-1) ... 80s Setting up apt-utils (2.9.33) ... 80s Setting up libdebuginfod-common (0.192-4) ... 80s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 80s Setting up bpftool (7.6.0+6.14.0-10.10) ... 80s Setting up libestr0:amd64 (0.1.11-2) ... 80s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 80s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 80s Setting up dosfstools (4.2-1.2) ... 80s Setting up rsyslog (8.2412.0-2ubuntu2) ... 80s info: The user `syslog' is already a member of `adm'. 81s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 81s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 81s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 81s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 81s Setting up linux-headers-generic (6.14.0-10.10) ... 81s Setting up libjemalloc2:amd64 (5.3.0-3) ... 81s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 81s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 82s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 82s Installing new version of config file /etc/apparmor.d/openvpn ... 83s Reloading AppArmor profiles 84s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 84s No schema files found: doing nothing. 84s Setting up libglib2.0-data (2.84.0-1) ... 84s Setting up libncurses6:amd64 (6.5+20250216-2) ... 84s Setting up strace (6.13+ds-1ubuntu1) ... 84s Setting up xz-utils (5.6.4-1) ... 84s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 84s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 87s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 87s Setting up libpci3:amd64 (1:3.13.0-2) ... 87s Setting up python-apt-common (2.9.9build1) ... 87s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 87s Setting up pnp.ids (0.393-3) ... 87s Setting up libnl-3-200:amd64 (3.7.0-1) ... 87s Setting up python3.13-minimal (3.13.2-2) ... 87s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 87s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 87s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 87s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 87s Setting up rsync (3.4.1+ds1-3) ... 88s rsync.service is a disabled or a static unit not running, not starting it. 88s Setting up python3.13-gdbm (3.13.2-2) ... 88s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 88s Setting up ncurses-term (6.5+20250216-2) ... 88s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 88s Setting up libpython3.13:amd64 (3.13.2-2) ... 88s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 88s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 88s Setting up linux-headers-virtual (6.14.0-10.10) ... 88s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 88s Setting up python3.13 (3.13.2-2) ... 89s Setting up htop (3.4.0-2) ... 89s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 92s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 92s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 92s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 92s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 92s Setting up libfwupd3:amd64 (2.0.6-4) ... 92s Setting up python3 (3.13.2-2) ... 92s Setting up python3-markupsafe (2.1.5-1build4) ... 92s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 94s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 94s Setting up hwdata (0.393-3) ... 94s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 95s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 95s Setting up linux-perf (6.14.0-10.10) ... 95s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 95s Setting up python3-gi (3.50.0-4build1) ... 95s Setting up pciutils (1:3.13.0-2) ... 95s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 95s Setting up curl (8.12.1-3ubuntu1) ... 95s Setting up linux-image-virtual (6.14.0-10.10) ... 95s Setting up linux-tools-common (6.14.0-10.10) ... 95s Setting up fwupd (2.0.6-4) ... 95s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 95s fwupd.service is a disabled or a static unit not running, not starting it. 95s Setting up python3-systemd (235-1build6) ... 95s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 95s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 95s Setting up linux-image-generic (6.14.0-10.10) ... 95s Setting up python3-dbus (1.3.2-5build5) ... 96s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 96s Setting up linux-generic (6.14.0-10.10) ... 96s Setting up python3-apt (2.9.9build1) ... 96s Setting up python3-yaml (6.0.2-1build2) ... 96s Setting up python3-lazr.uri (1.0.6-6) ... 96s Setting up binutils (2.44-3ubuntu1) ... 96s Setting up cloud-init-base (25.1-0ubuntu3) ... 98s Setting up linux-virtual (6.14.0-10.10) ... 98s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 98s Setting up cloud-init (25.1-0ubuntu3) ... 98s Processing triggers for systemd (257.3-1ubuntu3) ... 98s Processing triggers for man-db (2.13.0-1) ... 100s Processing triggers for dbus (1.16.2-1ubuntu1) ... 100s Processing triggers for libc-bin (2.41-1ubuntu1) ... 100s Processing triggers for initramfs-tools (0.146ubuntu1) ... 100s update-initramfs: Generating /boot/initrd.img-6.12.0-16-generic 100s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 112s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 112s /etc/kernel/postinst.d/initramfs-tools: 112s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 112s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 124s /etc/kernel/postinst.d/zz-update-grub: 124s Sourcing file `/etc/default/grub' 124s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 124s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 124s Generating grub configuration file ... 124s Found linux image: /boot/vmlinuz-6.14.0-10-generic 124s Found initrd image: /boot/initrd.img-6.14.0-10-generic 124s Found linux image: /boot/vmlinuz-6.12.0-16-generic 124s Found initrd image: /boot/initrd.img-6.12.0-16-generic 124s Found linux image: /boot/vmlinuz-6.11.0-8-generic 124s Found initrd image: /boot/initrd.img-6.11.0-8-generic 125s Warning: os-prober will not be executed to detect other bootable partitions. 125s Systems on them will not be added to the GRUB boot configuration. 125s Check GRUB_DISABLE_OS_PROBER documentation entry. 125s Adding boot menu entry for UEFI Firmware Settings ... 125s done 125s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 125s + /usr/lib/apt/apt-helper analyze-pattern ?true 125s + uname -r 125s + sed s/\./\\./g 125s + running_kernel_pattern=^linux-.*6\.12\.0-16-generic.* 125s + apt list ?obsolete 125s + tail -n+2 125s + cut -d/ -f1 125s + grep -v ^linux-.*6\.12\.0-16-generic.* 126s + obsolete_pkgs=linux-headers-6.11.0-8-generic 126s linux-headers-6.11.0-8 126s linux-headers-6.12.0-16 126s linux-image-6.11.0-8-generic 126s linux-modules-6.11.0-8-generic 126s linux-tools-6.11.0-8-generic 126s linux-tools-6.11.0-8 126s linux-tools-6.12.0-16 126s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-headers-6.12.0-16 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 linux-tools-6.12.0-16 126s Reading package lists... 127s Building dependency tree... 127s Reading state information... 127s Solving dependencies... 127s The following packages will be REMOVED: 127s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 127s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 127s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 127s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 127s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 127s linux-tools-6.12.0-16-generic* 127s 0 upgraded, 0 newly installed, 15 to remove and 5 not upgraded. 127s After this operation, 371 MB disk space will be freed. 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 128s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 128s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 128s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 128s Removing libpython3.12t64:amd64 (3.12.9-1) ... 128s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 128s Removing libnsl2:amd64 (1.3.0-3build3) ... 128s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 128s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 129s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 131s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 132s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 134s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 134s /etc/kernel/postrm.d/initramfs-tools: 134s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 134s /etc/kernel/postrm.d/zz-update-grub: 134s Sourcing file `/etc/default/grub' 134s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 134s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 134s Generating grub configuration file ... 134s Found linux image: /boot/vmlinuz-6.14.0-10-generic 134s Found initrd image: /boot/initrd.img-6.14.0-10-generic 135s Found linux image: /boot/vmlinuz-6.12.0-16-generic 135s Found initrd image: /boot/initrd.img-6.12.0-16-generic 135s Warning: os-prober will not be executed to detect other bootable partitions. 135s Systems on them will not be added to the GRUB boot configuration. 135s Check GRUB_DISABLE_OS_PROBER documentation entry. 135s Adding boot menu entry for UEFI Firmware Settings ... 135s done 135s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 135s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 135s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 135s Processing triggers for libc-bin (2.41-1ubuntu1) ... 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84830 files and directories currently installed.) 135s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 135s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 135s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 136s + grep -q trusty /etc/lsb-release 136s + [ ! -d /usr/share/doc/unattended-upgrades ] 136s + [ ! -d /usr/share/doc/lxd ] 136s + [ ! -d /usr/share/doc/lxd-client ] 136s + [ ! -d /usr/share/doc/snapd ] 136s + type iptables 136s + cat 136s + chmod 755 /etc/rc.local 136s + . /etc/rc.local 136s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 136s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 136s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 136s + uname -m 136s + [ x86_64 = ppc64le ] 136s + [ -d /run/systemd/system ] 136s + systemd-detect-virt --quiet --vm 136s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 136s + cat 136s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 136s + echo COMPRESS=lz4 136s autopkgtest [22:01:33]: upgrading testbed (apt dist-upgrade and autopurge) 136s Reading package lists... 136s Building dependency tree... 136s Reading state information... 136s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 137s Starting 2 pkgProblemResolver with broken count: 0 137s Done 137s Entering ResolveByKeep 137s 138s Calculating upgrade... 138s The following packages will be upgraded: 138s libc-bin libc-dev-bin libc6 libc6-dev locales 138s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 138s Need to get 10.5 MB of archives. 138s After this operation, 1024 B of additional disk space will be used. 138s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 138s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 138s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 138s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 138s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 138s Preconfiguring packages ... 138s Fetched 10.5 MB in 0s (51.0 MB/s) 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 138s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 138s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 139s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 139s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 139s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 139s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 139s Setting up libc6:amd64 (2.41-1ubuntu2) ... 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 139s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 139s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 139s Setting up libc-bin (2.41-1ubuntu2) ... 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 139s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 139s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 140s Setting up locales (2.41-1ubuntu2) ... 141s Generating locales (this might take a while)... 142s en_US.UTF-8... done 142s Generation complete. 142s Setting up libc-dev-bin (2.41-1ubuntu2) ... 142s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 142s Processing triggers for man-db (2.13.0-1) ... 143s Processing triggers for systemd (257.3-1ubuntu3) ... 144s Reading package lists... 144s Building dependency tree... 144s Reading state information... 145s Starting pkgProblemResolver with broken count: 0 145s Starting 2 pkgProblemResolver with broken count: 0 145s Done 145s Solving dependencies... 145s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 145s autopkgtest [22:01:42]: rebooting testbed after setup commands that affected boot 149s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 161s autopkgtest [22:01:58]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 162s autopkgtest [22:01:59]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-gsva 163s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-gsva 2.0.5+ds-1 (dsc) [2367 B] 163s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-gsva 2.0.5+ds-1 (tar) [1351 kB] 163s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-gsva 2.0.5+ds-1 (diff) [3736 B] 163s gpgv: Signature made Wed Jan 22 11:32:41 2025 UTC 163s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 163s gpgv: Can't check signature: No public key 163s dpkg-source: warning: cannot verify inline signature for ./r-bioc-gsva_2.0.5+ds-1.dsc: no acceptable signature found 163s autopkgtest [22:02:00]: testing package r-bioc-gsva version 2.0.5+ds-1 163s autopkgtest [22:02:00]: build not needed 165s autopkgtest [22:02:02]: test pkg-r-autopkgtest: preparing testbed 165s Reading package lists... 165s Building dependency tree... 166s Reading state information... 166s Starting pkgProblemResolver with broken count: 0 166s Starting 2 pkgProblemResolver with broken count: 0 166s Done 167s The following NEW packages will be installed: 167s build-essential comerr-dev cpp cpp-14 cpp-14-x86-64-linux-gnu 167s cpp-x86-64-linux-gnu dctrl-tools fontconfig fontconfig-config 167s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 167s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-14 167s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 167s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 167s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu hdf5-helpers 167s icu-devtools imagemagick-7-common javascript-common krb5-multidev libaec-dev 167s libaec0 libaom3 libasan8 libbibtex-parser-perl libblas-dev libblas3 167s libblosc1 libboost-dev libboost1.83-dev libbrotli-dev libbz2-dev libcairo2 167s libcc1-0 libcurl4-openssl-dev libdatrie1 libde265-0 libdeflate-dev 167s libdeflate0 libevent-2.1-7t64 libfftw3-double3 libfontconfig1 libgcc-14-dev 167s libgfortran-14-dev libgfortran5 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 167s libgnutls-openssl27t64 libgnutls28-dev libgomp1 libgraphite2-3 libgssrpc4t64 167s libharfbuzz0b libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 167s libhdf5-hl-310 libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 167s libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libhnswlib-dev 167s libhwasan0 libice6 libicu-dev libidn2-dev libio-string-perl libisl23 libitm1 167s libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 167s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 167s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 167s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 167s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 167s libjs-twitter-bootstrap-datepicker libkadm5clnt-mit12 libkadm5srv-mit12 167s libkdb5-10t64 libkpathsea6 libkrb5-dev liblapack-dev liblapack3 167s liblatex-tounicode-perl liblcms2-2 libldap-dev liblerc4 liblqr-1-0 liblsan0 167s libltdl7 liblua5.4-0 liblzma-dev libmagick++-7.q16-5 libmagickcore-7.q16-10 167s libmagickwand-7.q16-10 libmpc3 libmpfi0 libncurses-dev libnghttp2-dev 167s libopenjp2-7 libp11-kit-dev libpango-1.0-0 libpangocairo-1.0-0 167s libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 167s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 167s libpotrace0 libpsl-dev libptexenc1 libquadmath0 libraw23t64 libreadline-dev 167s librtmp-dev libsharpyuv0 libsm6 libsnappy1v5 libssh2-1-dev libssl-dev 167s libstdc++-14-dev libsynctex2 libsz2 libtasn1-6-dev libtcl8.6 libteckit0 167s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 167s libubsan1 libunbound8 libwebp7 libwebpdemux2 libwebpmux3 libxaw7 167s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 167s libxss1 libxt6t64 libzstd-dev libzzip-0-13t64 littler nettle-dev 167s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 167s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate 167s r-bioc-annotationdbi r-bioc-assorthead r-bioc-beachmat r-bioc-biobase 167s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocparallel 167s r-bioc-biocsingular r-bioc-biocstyle r-bioc-biocversion r-bioc-biostrings 167s r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-edger r-bioc-genefilter 167s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges 167s r-bioc-graph r-bioc-gseabase r-bioc-gsva r-bioc-gsvadata r-bioc-hdf5array 167s r-bioc-hgu95a.db r-bioc-iranges r-bioc-keggrest r-bioc-limma 167s r-bioc-matrixgenerics r-bioc-org.hs.eg.db r-bioc-rhdf5 r-bioc-rhdf5filters 167s r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-scaledmatrix 167s r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats 167s r-bioc-spatialexperiment r-bioc-summarizedexperiment r-bioc-ucsc.utils 167s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 167s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-blob 167s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools 167s r-cran-colorspace r-cran-colourpicker r-cran-commonmark r-cran-cpp11 167s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-dbi 167s r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi 167s r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 167s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 167s r-cran-future r-cran-generics r-cran-ggplot2 r-cran-globals r-cran-glue 167s r-cran-gtable r-cran-highr r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv 167s r-cran-httr r-cran-irlba r-cran-isoband r-cran-jquerylib r-cran-jsonlite 167s r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice 167s r-cran-lazyeval r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-locfit 167s r-cran-magick r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 167s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-miniui r-cran-munsell 167s r-cran-nlme r-cran-openssl r-cran-parallelly r-cran-pillar r-cran-pkgconfig 167s r-cran-pkgkitten r-cran-plogr r-cran-plotly r-cran-png r-cran-promises 167s r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 167s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-rsvd 167s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-shinydashboard 167s r-cran-shinyjs r-cran-snow r-cran-sourcetools r-cran-statmod r-cran-stringi 167s r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr 167s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridislite 167s r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml t1utils 167s tex-common texlive-base texlive-bibtex-extra texlive-binaries 167s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 167s 0 upgraded, 369 newly installed, 0 to remove and 0 not upgraded. 167s Need to get 582 MB of archives. 167s After this operation, 1927 MB of additional disk space will be used. 167s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 167s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libfftw3-double3 amd64 3.3.10-2fakesync1build1 [839 kB] 167s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 167s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 167s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 167s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 167s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 167s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libaom3 amd64 3.12.0-1 [2742 kB] 167s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-aomdec amd64 1.19.7-1 [11.6 kB] 167s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libde265-0 amd64 1.0.15-1build5 [285 kB] 167s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-libde265 amd64 1.19.7-1 [9060 B] 167s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif1 amd64 1.19.7-1 [428 kB] 167s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 167s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 167s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 167s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 167s Get:17 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblqr-1-0 amd64 0.4.2-2.1build2 [28.5 kB] 167s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libltdl7 amd64 2.5.4-4 [46.5 kB] 167s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.3-2 [218 kB] 167s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libraw23t64 amd64 0.21.3-1 [433 kB] 167s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 167s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 167s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 167s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 167s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 167s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 167s Get:27 http://ftpmaster.internal/ubuntu plucky/universe amd64 imagemagick-7-common all 8:7.1.1.43+dfsg1-1 [69.7 kB] 167s Get:28 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmagickcore-7.q16-10 amd64 8:7.1.1.43+dfsg1-1 [2306 kB] 167s Get:29 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmagickwand-7.q16-10 amd64 8:7.1.1.43+dfsg1-1 [347 kB] 167s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 167s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 167s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 168s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 168s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 168s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 168s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 168s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 168s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 168s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 168s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 168s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 168s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 168s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 168s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 168s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 169s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 169s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 169s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 169s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 169s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 169s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 169s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 169s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 169s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 169s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 169s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 169s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 169s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 169s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 169s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 169s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 169s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 169s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 169s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 169s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 169s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 169s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 hdf5-helpers amd64 1.14.5+repack-3 [17.0 kB] 169s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 169s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 169s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 comerr-dev amd64 2.1-1.47.2-1ubuntu1 [44.9 kB] 169s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libgssrpc4t64 amd64 1.21.3-4ubuntu2 [58.1 kB] 169s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libkadm5clnt-mit12 amd64 1.21.3-4ubuntu2 [41.3 kB] 169s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libkdb5-10t64 amd64 1.21.3-4ubuntu2 [42.0 kB] 169s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libkadm5srv-mit12 amd64 1.21.3-4ubuntu2 [55.5 kB] 169s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 krb5-multidev amd64 1.21.3-4ubuntu2 [125 kB] 169s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 169s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 169s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 169s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 169s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 169s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 169s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB] 169s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB] 169s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB] 169s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 169s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli-dev amd64 1.1.0-2build4 [381 kB] 169s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 169s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 169s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 169s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 169s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 169s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 169s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libidn2-dev amd64 2.3.7-2build2 [120 kB] 169s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libkrb5-dev amd64 1.21.3-4ubuntu2 [11.9 kB] 169s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libldap-dev amd64 2.6.9+dfsg-1~exp2ubuntu1 [335 kB] 169s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 169s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 169s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 169s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libnghttp2-dev amd64 1.64.0-1 [123 kB] 169s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpsl-dev amd64 0.21.2-1.1build1 [76.4 kB] 169s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3ubuntu1 [10.0 kB] 169s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3ubuntu1 [341 kB] 169s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10 [144 kB] 169s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libunbound8 amd64 1.22.0-1ubuntu1 [519 kB] 169s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-dane0t64 amd64 3.8.9-2ubuntu2 [24.4 kB] 169s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2ubuntu2 [24.6 kB] 169s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libp11-kit-dev amd64 0.25.5-2ubuntu3 [23.5 kB] 169s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libtasn1-6-dev amd64 4.20.0-2 [98.1 kB] 169s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 nettle-dev amd64 3.10.1-1 [1187 kB] 169s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls28-dev amd64 3.8.9-2ubuntu2 [1118 kB] 169s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 169s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2build7 [66.7 kB] 169s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libssl-dev amd64 3.4.1-1ubuntu1 [2873 kB] 169s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libssh2-1-dev amd64 1.11.1-1 [292 kB] 169s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [444 kB] 169s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4-openssl-dev amd64 8.12.1-3ubuntu1 [522 kB] 170s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 170s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 170s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 170s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 170s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 170s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 170s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-cpp-310 amd64 1.14.5+repack-3 [129 kB] 170s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-fortran-310 amd64 1.14.5+repack-3 [108 kB] 170s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 170s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-3 [32.4 kB] 170s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-3 [11.7 kB] 170s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 170s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 170s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 170s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec-dev amd64 1.1.3-1 [19.8 kB] 170s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-dev amd64 1.14.5+repack-3 [3505 kB] 170s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhnswlib-dev all 0.8.0-1build3 [24.4 kB] 170s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 170s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 170s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 170s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 170s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 170s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 170s Get:140 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 170s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 170s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 170s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 170s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 170s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 170s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 170s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 170s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 170s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 170s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 170s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 170s Get:152 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB] 170s Get:153 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 170s Get:154 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 170s Get:155 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 170s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmagick++-7.q16-5 amd64 8:7.1.1.43+dfsg1-1 [182 kB] 170s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 170s Get:158 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 170s Get:159 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 170s Get:160 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 170s Get:161 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 170s Get:162 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 170s Get:163 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 170s Get:164 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 170s Get:165 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 170s Get:166 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 170s Get:167 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 170s Get:168 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 170s Get:169 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 170s Get:170 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 170s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 170s Get:172 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB] 170s Get:173 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 170s Get:174 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 170s Get:175 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB] 170s Get:176 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 170s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 170s Get:178 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB] 170s Get:179 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 170s Get:180 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 170s Get:181 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 170s Get:182 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 170s Get:183 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 170s Get:184 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 170s Get:185 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 170s Get:186 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 170s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 170s Get:188 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 170s Get:189 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 170s Get:190 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 170s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 170s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 170s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 170s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 170s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 170s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 170s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 170s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 170s Get:199 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 170s Get:200 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 170s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 170s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 170s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 170s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 170s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 170s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 170s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 170s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 170s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB] 170s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 170s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 170s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 170s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 170s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 170s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 170s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 170s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 170s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 170s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 170s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 170s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 170s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 170s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 170s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 170s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 170s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 170s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 170s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 170s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 170s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 170s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 170s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 170s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 170s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 170s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 171s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 171s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 171s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 171s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 171s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 171s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 171s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 171s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB] 171s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-assorthead all 1.0.1+ds-2 [194 kB] 171s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 171s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 171s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 171s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 171s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 171s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 171s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1392 kB] 171s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 171s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 171s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 171s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-beachmat amd64 2.22.0+ds-2 [976 kB] 171s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 171s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 171s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 171s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 171s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 171s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 171s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 171s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 171s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 171s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 171s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 171s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 171s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 171s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbplyr all 2.5.0+dfsg-1 [1233 kB] 171s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 171s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 171s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 171s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 171s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 171s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 171s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 171s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 171s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 171s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 171s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-scaledmatrix all 1.14.0+dfsg-2 [324 kB] 171s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-irlba amd64 2.3.5.1-4 [295 kB] 171s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsvd all 1.0.5-1 [3589 kB] 171s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocsingular amd64 1.22.0+ds-2 [357 kB] 171s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 171s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 171s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 171s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 171s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 171s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 171s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 171s Get:291 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 171s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 171s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 171s Get:294 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 171s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 171s Get:296 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 171s Get:297 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 171s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 171s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 171s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 171s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 171s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 171s Get:303 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 171s Get:304 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 171s Get:305 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 171s Get:306 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 171s Get:307 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 171s Get:308 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 171s Get:309 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 171s Get:310 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 171s Get:311 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB] 171s Get:312 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 171s Get:313 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB] 171s Get:314 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB] 172s Get:315 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB] 172s Get:316 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 173s Get:317 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 173s Get:318 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 173s Get:319 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsematrixstats amd64 1.18.0+dfsg-2 [877 kB] 173s Get:320 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedmatrixstats all 1.28.1+ds-1 [502 kB] 173s Get:321 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 173s Get:322 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB] 173s Get:323 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-locfit amd64 1.5-9.12-1 [552 kB] 173s Get:324 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-edger amd64 4.4.2+dfsg-1 [1120 kB] 173s Get:325 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 173s Get:326 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genefilter amd64 1.88.0-2 [1243 kB] 173s Get:327 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 173s Get:328 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-graph amd64 1.84.1-1 [1298 kB] 173s Get:329 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-gseabase all 1.68.0+ds-2 [712 kB] 173s Get:330 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 173s Get:331 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-singlecellexperiment all 1.28.1+ds-2 [829 kB] 173s Get:332 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 173s Get:333 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magick amd64 2.8.5+dfsg-1build1 [534 kB] 173s Get:334 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-spatialexperiment all 1.16.0+ds-2 [947 kB] 173s Get:335 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5lib amd64 1.28.0+dfsg-2build1 [97.4 kB] 173s Get:336 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5filters amd64 1.18.0+dfsg-2 [137 kB] 173s Get:337 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5 amd64 2.50.2+dfsg-1build1 [822 kB] 173s Get:338 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-hdf5array amd64 1.34.0-2build1 [8792 kB] 173s Get:339 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-gsva amd64 2.0.5+ds-1 [1231 kB] 173s Get:340 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-org.hs.eg.db all 3.20.0-3 [63.1 MB] 174s Get:341 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-hgu95a.db all 3.13.0-2 [487 kB] 174s Get:342 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-gsvadata all 1.42.0-2 [17.9 MB] 175s Get:343 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 175s Get:344 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 175s Get:345 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 175s Get:346 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 175s Get:347 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB] 175s Get:348 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 175s Get:349 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 175s Get:350 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 175s Get:351 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 175s Get:352 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 175s Get:353 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 175s Get:354 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 175s Get:355 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 175s Get:356 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 175s Get:357 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-miniui all 0.1.1.1-3build1 [36.1 kB] 175s Get:358 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shinyjs all 2.1.0-1 [967 kB] 175s Get:359 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colourpicker all 1.3.0+dfsg-1 [1191 kB] 175s Get:360 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 175s Get:361 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 175s Get:362 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-data.table amd64 1.17.0+dfsg-1 [2168 kB] 175s Get:363 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-globals all 0.16.3-1 [120 kB] 175s Get:364 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 175s Get:365 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-parallelly amd64 1.42.0-1 [540 kB] 175s Get:366 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 175s Get:367 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plotly all 4.10.4+dfsg-2 [3666 kB] 175s Get:368 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 175s Get:369 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shinydashboard all 0.7.2-1 [269 kB] 176s Preconfiguring packages ... 176s Fetched 582 MB in 8s (70.6 MB/s) 176s Selecting previously unselected package libgomp1:amd64. 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 176s Preparing to unpack .../000-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 176s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 176s Selecting previously unselected package libfftw3-double3:amd64. 176s Preparing to unpack .../001-libfftw3-double3_3.3.10-2fakesync1build1_amd64.deb ... 176s Unpacking libfftw3-double3:amd64 (3.3.10-2fakesync1build1) ... 177s Selecting previously unselected package fonts-dejavu-mono. 177s Preparing to unpack .../002-fonts-dejavu-mono_2.37-8_all.deb ... 177s Unpacking fonts-dejavu-mono (2.37-8) ... 177s Selecting previously unselected package fonts-dejavu-core. 177s Preparing to unpack .../003-fonts-dejavu-core_2.37-8_all.deb ... 177s Unpacking fonts-dejavu-core (2.37-8) ... 177s Selecting previously unselected package fontconfig-config. 177s Preparing to unpack .../004-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 177s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 177s Selecting previously unselected package libfontconfig1:amd64. 177s Preparing to unpack .../005-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 177s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 177s Selecting previously unselected package libsharpyuv0:amd64. 177s Preparing to unpack .../006-libsharpyuv0_1.5.0-0.1_amd64.deb ... 177s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 177s Selecting previously unselected package libaom3:amd64. 177s Preparing to unpack .../007-libaom3_3.12.0-1_amd64.deb ... 177s Unpacking libaom3:amd64 (3.12.0-1) ... 177s Selecting previously unselected package libheif-plugin-aomdec:amd64. 177s Preparing to unpack .../008-libheif-plugin-aomdec_1.19.7-1_amd64.deb ... 177s Unpacking libheif-plugin-aomdec:amd64 (1.19.7-1) ... 177s Selecting previously unselected package libde265-0:amd64. 177s Preparing to unpack .../009-libde265-0_1.0.15-1build5_amd64.deb ... 177s Unpacking libde265-0:amd64 (1.0.15-1build5) ... 177s Selecting previously unselected package libheif-plugin-libde265:amd64. 177s Preparing to unpack .../010-libheif-plugin-libde265_1.19.7-1_amd64.deb ... 177s Unpacking libheif-plugin-libde265:amd64 (1.19.7-1) ... 177s Selecting previously unselected package libheif1:amd64. 177s Preparing to unpack .../011-libheif1_1.19.7-1_amd64.deb ... 177s Unpacking libheif1:amd64 (1.19.7-1) ... 177s Selecting previously unselected package libjbig0:amd64. 177s Preparing to unpack .../012-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 177s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 177s Selecting previously unselected package libjpeg-turbo8:amd64. 177s Preparing to unpack .../013-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 177s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 177s Selecting previously unselected package libjpeg8:amd64. 177s Preparing to unpack .../014-libjpeg8_8c-2ubuntu11_amd64.deb ... 177s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 177s Selecting previously unselected package liblcms2-2:amd64. 177s Preparing to unpack .../015-liblcms2-2_2.16-2_amd64.deb ... 177s Unpacking liblcms2-2:amd64 (2.16-2) ... 177s Selecting previously unselected package liblqr-1-0:amd64. 177s Preparing to unpack .../016-liblqr-1-0_0.4.2-2.1build2_amd64.deb ... 177s Unpacking liblqr-1-0:amd64 (0.4.2-2.1build2) ... 177s Selecting previously unselected package libltdl7:amd64. 177s Preparing to unpack .../017-libltdl7_2.5.4-4_amd64.deb ... 177s Unpacking libltdl7:amd64 (2.5.4-4) ... 177s Selecting previously unselected package libopenjp2-7:amd64. 177s Preparing to unpack .../018-libopenjp2-7_2.5.3-2_amd64.deb ... 177s Unpacking libopenjp2-7:amd64 (2.5.3-2) ... 177s Selecting previously unselected package libraw23t64:amd64. 177s Preparing to unpack .../019-libraw23t64_0.21.3-1_amd64.deb ... 177s Unpacking libraw23t64:amd64 (0.21.3-1) ... 177s Selecting previously unselected package libdeflate0:amd64. 177s Preparing to unpack .../020-libdeflate0_1.23-1_amd64.deb ... 177s Unpacking libdeflate0:amd64 (1.23-1) ... 177s Selecting previously unselected package liblerc4:amd64. 177s Preparing to unpack .../021-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 177s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 178s Selecting previously unselected package libwebp7:amd64. 178s Preparing to unpack .../022-libwebp7_1.5.0-0.1_amd64.deb ... 178s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 178s Selecting previously unselected package libtiff6:amd64. 178s Preparing to unpack .../023-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 178s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 178s Selecting previously unselected package libwebpdemux2:amd64. 178s Preparing to unpack .../024-libwebpdemux2_1.5.0-0.1_amd64.deb ... 178s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ... 178s Selecting previously unselected package libwebpmux3:amd64. 178s Preparing to unpack .../025-libwebpmux3_1.5.0-0.1_amd64.deb ... 178s Unpacking libwebpmux3:amd64 (1.5.0-0.1) ... 178s Selecting previously unselected package imagemagick-7-common. 178s Preparing to unpack .../026-imagemagick-7-common_8%3a7.1.1.43+dfsg1-1_all.deb ... 178s Unpacking imagemagick-7-common (8:7.1.1.43+dfsg1-1) ... 178s Selecting previously unselected package libmagickcore-7.q16-10:amd64. 178s Preparing to unpack .../027-libmagickcore-7.q16-10_8%3a7.1.1.43+dfsg1-1_amd64.deb ... 178s Unpacking libmagickcore-7.q16-10:amd64 (8:7.1.1.43+dfsg1-1) ... 178s Selecting previously unselected package libmagickwand-7.q16-10:amd64. 178s Preparing to unpack .../028-libmagickwand-7.q16-10_8%3a7.1.1.43+dfsg1-1_amd64.deb ... 178s Unpacking libmagickwand-7.q16-10:amd64 (8:7.1.1.43+dfsg1-1) ... 178s Selecting previously unselected package libisl23:amd64. 178s Preparing to unpack .../029-libisl23_0.27-1_amd64.deb ... 178s Unpacking libisl23:amd64 (0.27-1) ... 178s Selecting previously unselected package libmpc3:amd64. 178s Preparing to unpack .../030-libmpc3_1.3.1-1build2_amd64.deb ... 178s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 178s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 178s Preparing to unpack .../031-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 178s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 178s Selecting previously unselected package cpp-14. 178s Preparing to unpack .../032-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 178s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 178s Selecting previously unselected package cpp-x86-64-linux-gnu. 178s Preparing to unpack .../033-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 178s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 178s Selecting previously unselected package cpp. 178s Preparing to unpack .../034-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 178s Unpacking cpp (4:14.2.0-1ubuntu1) ... 178s Selecting previously unselected package libcc1-0:amd64. 178s Preparing to unpack .../035-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 178s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 178s Selecting previously unselected package libitm1:amd64. 178s Preparing to unpack .../036-libitm1_15-20250222-0ubuntu1_amd64.deb ... 178s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 178s Selecting previously unselected package libasan8:amd64. 178s Preparing to unpack .../037-libasan8_15-20250222-0ubuntu1_amd64.deb ... 178s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 178s Selecting previously unselected package liblsan0:amd64. 179s Preparing to unpack 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unpack .../063-gfortran-14_14.2.0-17ubuntu3_amd64.deb ... 181s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 181s Selecting previously unselected package gfortran-x86-64-linux-gnu. 181s Preparing to unpack .../064-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 181s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 181s Selecting previously unselected package gfortran. 181s Preparing to unpack .../065-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 181s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 181s Selecting previously unselected package hdf5-helpers. 181s Preparing to unpack .../066-hdf5-helpers_1.14.5+repack-3_amd64.deb ... 181s Unpacking hdf5-helpers (1.14.5+repack-3) ... 181s Selecting previously unselected package icu-devtools. 181s Preparing to unpack .../067-icu-devtools_76.1-1ubuntu2_amd64.deb ... 181s Unpacking icu-devtools (76.1-1ubuntu2) ... 181s Selecting previously unselected package javascript-common. 181s Preparing to unpack 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libboost1.83-dev:amd64 (1.83.0-4.1ubuntu2) ... 184s Selecting previously unselected package libboost-dev:amd64. 184s Preparing to unpack .../084-libboost-dev_1.83.0.2ubuntu1_amd64.deb ... 184s Unpacking libboost-dev:amd64 (1.83.0.2ubuntu1) ... 184s Selecting previously unselected package libbrotli-dev:amd64. 184s Preparing to unpack .../085-libbrotli-dev_1.1.0-2build4_amd64.deb ... 184s Unpacking libbrotli-dev:amd64 (1.1.0-2build4) ... 184s Selecting previously unselected package libbz2-dev:amd64. 184s Preparing to unpack .../086-libbz2-dev_1.0.8-6_amd64.deb ... 184s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 184s Selecting previously unselected package libpixman-1-0:amd64. 184s Preparing to unpack .../087-libpixman-1-0_0.44.0-3_amd64.deb ... 184s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 184s Selecting previously unselected package libxcb-render0:amd64. 184s Preparing to unpack .../088-libxcb-render0_1.17.0-2_amd64.deb ... 184s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 184s Selecting previously unselected package libxcb-shm0:amd64. 184s Preparing to unpack .../089-libxcb-shm0_1.17.0-2_amd64.deb ... 184s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 184s Selecting previously unselected package libxrender1:amd64. 184s Preparing to unpack .../090-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 184s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 184s Selecting previously unselected package libcairo2:amd64. 184s Preparing to unpack .../091-libcairo2_1.18.2-2_amd64.deb ... 184s Unpacking libcairo2:amd64 (1.18.2-2) ... 184s Selecting previously unselected package libidn2-dev:amd64. 184s Preparing to unpack .../092-libidn2-dev_2.3.7-2build2_amd64.deb ... 184s Unpacking libidn2-dev:amd64 (2.3.7-2build2) ... 185s Selecting previously unselected package libkrb5-dev:amd64. 185s Preparing to unpack .../093-libkrb5-dev_1.21.3-4ubuntu2_amd64.deb ... 185s Unpacking libkrb5-dev:amd64 (1.21.3-4ubuntu2) ... 185s Selecting previously unselected package libldap-dev:amd64. 185s Preparing to unpack .../094-libldap-dev_2.6.9+dfsg-1~exp2ubuntu1_amd64.deb ... 185s Unpacking libldap-dev:amd64 (2.6.9+dfsg-1~exp2ubuntu1) ... 185s Selecting previously unselected package libpkgconf3:amd64. 185s Preparing to unpack .../095-libpkgconf3_1.8.1-4_amd64.deb ... 185s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 185s Selecting previously unselected package pkgconf-bin. 185s Preparing to unpack .../096-pkgconf-bin_1.8.1-4_amd64.deb ... 185s Unpacking pkgconf-bin (1.8.1-4) ... 185s Selecting previously unselected package pkgconf:amd64. 185s Preparing to unpack .../097-pkgconf_1.8.1-4_amd64.deb ... 185s Unpacking pkgconf:amd64 (1.8.1-4) ... 185s Selecting previously unselected package libnghttp2-dev:amd64. 185s Preparing to unpack .../098-libnghttp2-dev_1.64.0-1_amd64.deb ... 185s Unpacking libnghttp2-dev:amd64 (1.64.0-1) ... 185s Selecting previously unselected package libpsl-dev:amd64. 185s Preparing to unpack .../099-libpsl-dev_0.21.2-1.1build1_amd64.deb ... 185s Unpacking libpsl-dev:amd64 (0.21.2-1.1build1) ... 185s Selecting previously unselected package libgmpxx4ldbl:amd64. 185s Preparing to unpack .../100-libgmpxx4ldbl_2%3a6.3.0+dfsg-3ubuntu1_amd64.deb ... 185s Unpacking libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3ubuntu1) ... 185s Selecting previously unselected package libgmp-dev:amd64. 185s Preparing to unpack .../101-libgmp-dev_2%3a6.3.0+dfsg-3ubuntu1_amd64.deb ... 185s Unpacking libgmp-dev:amd64 (2:6.3.0+dfsg-3ubuntu1) ... 185s Selecting previously unselected package libevent-2.1-7t64:amd64. 185s Preparing to unpack .../102-libevent-2.1-7t64_2.1.12-stable-10_amd64.deb ... 185s Unpacking libevent-2.1-7t64:amd64 (2.1.12-stable-10) ... 185s Selecting previously unselected package libunbound8:amd64. 185s Preparing to unpack .../103-libunbound8_1.22.0-1ubuntu1_amd64.deb ... 185s Unpacking libunbound8:amd64 (1.22.0-1ubuntu1) ... 185s Selecting previously unselected package libgnutls-dane0t64:amd64. 185s Preparing to unpack .../104-libgnutls-dane0t64_3.8.9-2ubuntu2_amd64.deb ... 185s Unpacking libgnutls-dane0t64:amd64 (3.8.9-2ubuntu2) ... 185s Selecting previously unselected package libgnutls-openssl27t64:amd64. 185s Preparing to unpack .../105-libgnutls-openssl27t64_3.8.9-2ubuntu2_amd64.deb ... 185s Unpacking libgnutls-openssl27t64:amd64 (3.8.9-2ubuntu2) ... 185s Selecting previously unselected package libp11-kit-dev:amd64. 185s Preparing to unpack .../106-libp11-kit-dev_0.25.5-2ubuntu3_amd64.deb ... 185s Unpacking libp11-kit-dev:amd64 (0.25.5-2ubuntu3) ... 185s Selecting previously unselected package libtasn1-6-dev:amd64. 185s Preparing to unpack .../107-libtasn1-6-dev_4.20.0-2_amd64.deb ... 185s Unpacking libtasn1-6-dev:amd64 (4.20.0-2) ... 185s Selecting previously unselected package nettle-dev:amd64. 185s Preparing to unpack .../108-nettle-dev_3.10.1-1_amd64.deb ... 185s Unpacking nettle-dev:amd64 (3.10.1-1) ... 185s Selecting previously unselected package libgnutls28-dev:amd64. 185s Preparing to unpack .../109-libgnutls28-dev_3.8.9-2ubuntu2_amd64.deb ... 185s Unpacking libgnutls28-dev:amd64 (3.8.9-2ubuntu2) ... 185s Selecting previously unselected package zlib1g-dev:amd64. 185s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 185s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 185s Selecting previously unselected package librtmp-dev:amd64. 185s Preparing to unpack .../111-librtmp-dev_2.4+20151223.gitfa8646d.1-2build7_amd64.deb ... 185s Unpacking librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2build7) ... 185s Selecting previously unselected package libssl-dev:amd64. 185s Preparing to unpack .../112-libssl-dev_3.4.1-1ubuntu1_amd64.deb ... 185s Unpacking libssl-dev:amd64 (3.4.1-1ubuntu1) ... 185s Selecting previously unselected package libssh2-1-dev:amd64. 185s Preparing to unpack .../113-libssh2-1-dev_1.11.1-1_amd64.deb ... 185s Unpacking libssh2-1-dev:amd64 (1.11.1-1) ... 186s Selecting previously unselected package libzstd-dev:amd64. 186s Preparing to unpack .../114-libzstd-dev_1.5.6+dfsg-2_amd64.deb ... 186s Unpacking libzstd-dev:amd64 (1.5.6+dfsg-2) ... 186s Selecting previously unselected package libcurl4-openssl-dev:amd64. 186s Preparing to unpack .../115-libcurl4-openssl-dev_8.12.1-3ubuntu1_amd64.deb ... 186s Unpacking libcurl4-openssl-dev:amd64 (8.12.1-3ubuntu1) ... 186s Selecting previously unselected package libdatrie1:amd64. 186s Preparing to unpack .../116-libdatrie1_0.2.13-3build1_amd64.deb ... 186s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 186s Selecting previously unselected package libdeflate-dev:amd64. 186s Preparing to unpack .../117-libdeflate-dev_1.23-1_amd64.deb ... 186s Unpacking libdeflate-dev:amd64 (1.23-1) ... 186s Selecting previously unselected package libgraphite2-3:amd64. 186s Preparing to unpack .../118-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 186s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 186s Selecting previously unselected package libharfbuzz0b:amd64. 186s Preparing to unpack .../119-libharfbuzz0b_10.2.0-1_amd64.deb ... 186s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 186s Selecting previously unselected package libsz2:amd64. 186s Preparing to unpack .../120-libsz2_1.1.3-1_amd64.deb ... 186s Unpacking libsz2:amd64 (1.1.3-1) ... 186s Selecting previously unselected package libhdf5-310:amd64. 186s Preparing to unpack .../121-libhdf5-310_1.14.5+repack-3_amd64.deb ... 186s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... 186s Selecting previously unselected package libhdf5-cpp-310:amd64. 186s Preparing to unpack .../122-libhdf5-cpp-310_1.14.5+repack-3_amd64.deb ... 186s Unpacking libhdf5-cpp-310:amd64 (1.14.5+repack-3) ... 186s Selecting previously unselected package libhdf5-fortran-310:amd64. 186s Preparing to unpack .../123-libhdf5-fortran-310_1.14.5+repack-3_amd64.deb ... 186s Unpacking libhdf5-fortran-310:amd64 (1.14.5+repack-3) ... 186s Selecting previously unselected package libhdf5-hl-310:amd64. 186s Preparing to unpack .../124-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ... 186s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 186s Selecting previously unselected package libhdf5-hl-fortran-310:amd64. 186s Preparing to unpack .../125-libhdf5-hl-fortran-310_1.14.5+repack-3_amd64.deb ... 186s Unpacking libhdf5-hl-fortran-310:amd64 (1.14.5+repack-3) ... 186s Selecting previously unselected package libhdf5-hl-cpp-310:amd64. 186s Preparing to unpack .../126-libhdf5-hl-cpp-310_1.14.5+repack-3_amd64.deb ... 186s Unpacking libhdf5-hl-cpp-310:amd64 (1.14.5+repack-3) ... 186s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 186s Preparing to unpack .../127-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ... 186s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 186s Selecting previously unselected package libjpeg8-dev:amd64. 186s Preparing to unpack .../128-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 186s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 186s Selecting previously unselected package libjpeg-dev:amd64. 186s Preparing to unpack .../129-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 186s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 186s Selecting previously unselected package libaec-dev:amd64. 186s Preparing to unpack .../130-libaec-dev_1.1.3-1_amd64.deb ... 186s Unpacking libaec-dev:amd64 (1.1.3-1) ... 186s Selecting previously unselected package libhdf5-dev. 186s Preparing to unpack .../131-libhdf5-dev_1.14.5+repack-3_amd64.deb ... 186s Unpacking libhdf5-dev (1.14.5+repack-3) ... 186s Selecting previously unselected package libhnswlib-dev. 186s Preparing to unpack .../132-libhnswlib-dev_0.8.0-1build3_all.deb ... 186s Unpacking libhnswlib-dev (0.8.0-1build3) ... 186s Selecting previously unselected package x11-common. 187s Preparing to unpack .../133-x11-common_1%3a7.7+23ubuntu3_all.deb ... 187s Unpacking x11-common (1:7.7+23ubuntu3) ... 187s Selecting previously unselected package libice6:amd64. 187s Preparing to unpack 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package libjs-microplugin.js. 187s Preparing to unpack .../145-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 187s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 187s Selecting previously unselected package libjs-jquery-selectize.js. 187s Preparing to unpack .../146-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 187s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 187s Selecting previously unselected package libjs-jquery-ui. 187s Preparing to unpack .../147-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 187s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 188s Selecting previously unselected package libjs-json. 188s Preparing to unpack .../148-libjs-json_0~20221030+~1.0.8-1_all.deb ... 188s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 188s Selecting previously unselected package libjs-lunr. 188s Preparing to unpack .../149-libjs-lunr_2.3.9~dfsg-2_all.deb ... 188s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 188s Selecting previously unselected package libjs-prettify. 188s 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package libptexenc1:amd64. 189s Preparing to unpack .../171-libptexenc1_2024.20240313.70630+ds-6_amd64.deb ... 189s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-6) ... 189s Selecting previously unselected package libreadline-dev:amd64. 189s Preparing to unpack .../172-libreadline-dev_8.2-6_amd64.deb ... 189s Unpacking libreadline-dev:amd64 (8.2-6) ... 189s Selecting previously unselected package libsm6:amd64. 189s Preparing to unpack .../173-libsm6_2%3a1.2.4-1_amd64.deb ... 189s Unpacking libsm6:amd64 (2:1.2.4-1) ... 189s Selecting previously unselected package libsynctex2:amd64. 189s Preparing to unpack .../174-libsynctex2_2024.20240313.70630+ds-6_amd64.deb ... 189s Unpacking libsynctex2:amd64 (2024.20240313.70630+ds-6) ... 189s Selecting previously unselected package libtcl8.6:amd64. 189s Preparing to unpack .../175-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 189s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 189s Selecting previously unselected package libteckit0:amd64. 189s 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libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 189s Selecting previously unselected package zip. 189s Preparing to unpack .../187-zip_3.0-14ubuntu2_amd64.deb ... 189s Unpacking zip (3.0-14ubuntu2) ... 189s Selecting previously unselected package unzip. 189s Preparing to unpack .../188-unzip_6.0-28ubuntu6_amd64.deb ... 189s Unpacking unzip (6.0-28ubuntu6) ... 189s Selecting previously unselected package xdg-utils. 189s Preparing to unpack .../189-xdg-utils_1.2.1-2ubuntu1_all.deb ... 189s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 190s Selecting previously unselected package r-base-core. 190s Preparing to unpack .../190-r-base-core_4.4.3-1_amd64.deb ... 190s Unpacking r-base-core (4.4.3-1) ... 190s Selecting previously unselected package r-cran-littler. 190s Preparing to unpack .../191-r-cran-littler_0.3.20-2_amd64.deb ... 190s Unpacking r-cran-littler (0.3.20-2) ... 190s Selecting previously unselected package littler. 190s Preparing to unpack .../192-littler_0.3.20-2_all.deb ... 190s 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191s Preparing to unpack .../198-liblzma-dev_5.6.4-1_amd64.deb ... 191s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 191s Selecting previously unselected package libtirpc-dev:amd64. 191s Preparing to unpack .../199-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 191s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 191s Selecting previously unselected package r-base-dev. 191s Preparing to unpack .../200-r-base-dev_4.4.3-1_all.deb ... 191s Unpacking r-base-dev (4.4.3-1) ... 191s Selecting previously unselected package pkg-r-autopkgtest. 191s Preparing to unpack .../201-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 191s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 191s Selecting previously unselected package r-bioc-biocgenerics. 191s Preparing to unpack .../202-r-bioc-biocgenerics_0.52.0-2_all.deb ... 191s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 191s Selecting previously unselected package r-bioc-biobase. 191s Preparing to unpack .../203-r-bioc-biobase_2.66.0-2_amd64.deb ... 191s Unpacking r-bioc-biobase (2.66.0-2) ... 191s Selecting previously unselected package r-bioc-s4vectors. 191s Preparing to unpack .../204-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 191s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 192s Selecting previously unselected package r-bioc-iranges. 192s Preparing to unpack .../205-r-bioc-iranges_2.40.1-2_amd64.deb ... 192s Unpacking r-bioc-iranges (2.40.1-2) ... 192s Selecting previously unselected package r-cran-dbi. 192s Preparing to unpack .../206-r-cran-dbi_1.2.3-1_all.deb ... 192s Unpacking r-cran-dbi (1.2.3-1) ... 192s Selecting previously unselected package r-cran-bit. 192s Preparing to unpack .../207-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 192s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 192s Selecting previously unselected package r-cran-bit64. 192s Preparing to unpack .../208-r-cran-bit64_4.6.0-1-1ubuntu2_amd64.deb ... 192s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 192s Selecting previously unselected package r-cran-rlang. 192s Preparing to unpack .../209-r-cran-rlang_1.1.5-1_amd64.deb ... 192s Unpacking r-cran-rlang (1.1.5-1) ... 192s Selecting previously unselected package r-cran-cli. 192s Preparing to unpack .../210-r-cran-cli_3.6.4-1_amd64.deb ... 192s Unpacking r-cran-cli (3.6.4-1) ... 192s Selecting previously unselected package r-cran-glue. 192s Preparing to unpack .../211-r-cran-glue_1.8.0-1_amd64.deb ... 192s Unpacking r-cran-glue (1.8.0-1) ... 192s Selecting previously unselected package r-cran-lifecycle. 192s Preparing to unpack .../212-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 192s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 192s Selecting previously unselected package r-cran-vctrs. 192s Preparing to unpack .../213-r-cran-vctrs_0.6.5-1_amd64.deb ... 192s Unpacking r-cran-vctrs (0.6.5-1) ... 192s Selecting previously unselected package r-cran-blob. 192s Preparing to unpack .../214-r-cran-blob_1.2.4-1_all.deb ... 192s Unpacking r-cran-blob (1.2.4-1) ... 192s Selecting previously unselected package r-cran-fastmap. 192s Preparing to unpack .../215-r-cran-fastmap_1.2.0-1_amd64.deb ... 192s Unpacking r-cran-fastmap (1.2.0-1) ... 192s Selecting previously unselected package r-cran-cachem. 192s Preparing to unpack .../216-r-cran-cachem_1.1.0-1_amd64.deb ... 192s Unpacking r-cran-cachem (1.1.0-1) ... 192s Selecting previously unselected package r-cran-memoise. 192s Preparing to unpack .../217-r-cran-memoise_2.0.1-1_all.deb ... 192s Unpacking r-cran-memoise (2.0.1-1) ... 192s Selecting previously unselected package r-cran-pkgconfig. 192s Preparing to unpack .../218-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 192s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 192s Selecting previously unselected package r-cran-plogr. 192s Preparing to unpack .../219-r-cran-plogr_0.2.0-3build1_all.deb ... 192s Unpacking r-cran-plogr (0.2.0-3build1) ... 192s Selecting previously unselected package r-cran-cpp11. 192s Preparing to unpack .../220-r-cran-cpp11_0.5.2-1_all.deb ... 192s Unpacking r-cran-cpp11 (0.5.2-1) ... 192s Selecting previously unselected package r-cran-rsqlite. 192s Preparing to unpack .../221-r-cran-rsqlite_2.3.9-1_amd64.deb ... 192s Unpacking r-cran-rsqlite (2.3.9-1) ... 192s Selecting previously unselected package r-cran-curl. 192s Preparing to unpack .../222-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 192s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 192s Selecting previously unselected package r-cran-jsonlite. 192s Preparing to unpack .../223-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 192s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 193s Selecting previously unselected package r-cran-mime. 193s Preparing to unpack .../224-r-cran-mime_0.12-2_amd64.deb ... 193s Unpacking r-cran-mime (0.12-2) ... 193s Selecting previously unselected package r-cran-sys. 193s Preparing to unpack .../225-r-cran-sys_3.4.3-1_amd64.deb ... 193s Unpacking r-cran-sys (3.4.3-1) ... 193s Selecting previously unselected package r-cran-askpass. 193s Preparing to unpack .../226-r-cran-askpass_1.2.1-1_amd64.deb ... 193s Unpacking r-cran-askpass (1.2.1-1) ... 193s Selecting previously unselected package r-cran-openssl. 193s Preparing to unpack .../227-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 193s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 193s Selecting previously unselected package r-cran-r6. 193s Preparing to unpack .../228-r-cran-r6_2.6.1-1_all.deb ... 193s Unpacking r-cran-r6 (2.6.1-1) ... 193s Selecting previously unselected package r-cran-httr. 193s Preparing to unpack .../229-r-cran-httr_1.4.7+dfsg-1_all.deb ... 193s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 193s Selecting previously unselected package r-cran-png. 193s Preparing to unpack .../230-r-cran-png_0.1-8-1build2_amd64.deb ... 193s Unpacking r-cran-png (0.1-8-1build2) ... 193s Selecting previously unselected package r-bioc-zlibbioc. 193s Preparing to unpack .../231-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 193s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 193s Selecting previously unselected package r-bioc-xvector. 193s Preparing to unpack .../232-r-bioc-xvector_0.46.0-2_amd64.deb ... 193s Unpacking r-bioc-xvector (0.46.0-2) ... 193s Selecting previously unselected package r-bioc-ucsc.utils. 193s Preparing to unpack .../233-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 193s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 193s Selecting previously unselected package r-bioc-genomeinfodbdata. 193s Preparing to unpack .../234-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 193s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 193s Selecting previously unselected package r-bioc-genomeinfodb. 193s Preparing to unpack .../235-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 193s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 193s Selecting previously unselected package r-cran-crayon. 193s Preparing to unpack .../236-r-cran-crayon_1.5.3-1_all.deb ... 193s Unpacking r-cran-crayon (1.5.3-1) ... 193s Selecting previously unselected package r-bioc-biostrings. 193s Preparing to unpack .../237-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 193s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 193s Selecting previously unselected package r-bioc-keggrest. 193s Preparing to unpack .../238-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 193s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 193s Selecting previously unselected package r-bioc-annotationdbi. 193s Preparing to unpack .../239-r-bioc-annotationdbi_1.68.0-2_all.deb ... 193s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 194s Selecting previously unselected package r-cran-xml. 194s Preparing to unpack .../240-r-cran-xml_3.99-0.18-1_amd64.deb ... 194s Unpacking r-cran-xml (3.99-0.18-1) ... 194s Selecting previously unselected package r-cran-xtable. 194s Preparing to unpack .../241-r-cran-xtable_1%3a1.8-4-2_all.deb ... 194s Unpacking r-cran-xtable (1:1.8-4-2) ... 194s Selecting previously unselected package r-bioc-annotate. 194s Preparing to unpack .../242-r-bioc-annotate_1.84.0+dfsg-2_all.deb ... 194s Unpacking r-bioc-annotate (1.84.0+dfsg-2) ... 194s Selecting previously unselected package r-bioc-assorthead. 194s Preparing to unpack .../243-r-bioc-assorthead_1.0.1+ds-2_all.deb ... 194s Unpacking r-bioc-assorthead (1.0.1+ds-2) ... 194s Selecting previously unselected package r-cran-lattice. 194s Preparing to unpack .../244-r-cran-lattice_0.22-6-1_amd64.deb ... 194s Unpacking r-cran-lattice (0.22-6-1) ... 194s Selecting previously unselected package r-cran-matrix. 194s Preparing to unpack .../245-r-cran-matrix_1.7-3-1_amd64.deb ... 194s Unpacking r-cran-matrix (1.7-3-1) ... 194s Selecting previously unselected package r-cran-matrixstats. 194s Preparing to unpack .../246-r-cran-matrixstats_1.5.0-1_amd64.deb ... 194s Unpacking r-cran-matrixstats (1.5.0-1) ... 194s Selecting previously unselected package r-bioc-matrixgenerics. 194s Preparing to unpack .../247-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 194s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 194s Selecting previously unselected package r-cran-abind. 194s Preparing to unpack .../248-r-cran-abind_1.4-8-1_all.deb ... 194s Unpacking r-cran-abind (1.4-8-1) ... 194s Selecting previously unselected package r-bioc-s4arrays. 194s Preparing to unpack .../249-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 194s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 194s Selecting previously unselected package r-bioc-sparsearray. 194s Preparing to unpack .../250-r-bioc-sparsearray_1.6.2+dfsg-1_amd64.deb ... 194s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 194s Selecting previously unselected package r-bioc-delayedarray. 194s Preparing to unpack .../251-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 194s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 194s Selecting previously unselected package r-cran-pkgkitten. 194s Preparing to unpack .../252-r-cran-pkgkitten_0.2.4-1_all.deb ... 194s Unpacking r-cran-pkgkitten (0.2.4-1) ... 194s Selecting previously unselected package r-cran-rcpp. 194s Preparing to unpack .../253-r-cran-rcpp_1.0.14-1_amd64.deb ... 194s Unpacking r-cran-rcpp (1.0.14-1) ... 195s Selecting previously unselected package r-bioc-beachmat. 195s Preparing to unpack .../254-r-bioc-beachmat_2.22.0+ds-2_amd64.deb ... 195s Unpacking r-bioc-beachmat (2.22.0+ds-2) ... 195s Selecting previously unselected package r-cran-generics. 195s Preparing to unpack .../255-r-cran-generics_0.1.3-1_all.deb ... 195s Unpacking r-cran-generics (0.1.3-1) ... 195s Selecting previously unselected package r-cran-magrittr. 195s Preparing to unpack .../256-r-cran-magrittr_2.0.3-1_amd64.deb ... 195s Unpacking r-cran-magrittr (2.0.3-1) ... 195s Selecting previously unselected package r-cran-utf8. 195s Preparing to unpack .../257-r-cran-utf8_1.2.4-1_amd64.deb ... 195s Unpacking r-cran-utf8 (1.2.4-1) ... 195s Selecting previously unselected package r-cran-pillar. 195s Preparing to unpack .../258-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 195s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 195s Selecting previously unselected package r-cran-fansi. 195s Preparing to unpack .../259-r-cran-fansi_1.0.5-1_amd64.deb ... 195s Unpacking r-cran-fansi (1.0.5-1) ... 195s Selecting previously unselected package r-cran-tibble. 195s Preparing to unpack .../260-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 195s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 195s Selecting previously unselected package r-cran-withr. 195s Preparing to unpack .../261-r-cran-withr_3.0.2+dfsg-1_all.deb ... 195s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 195s Selecting previously unselected package r-cran-tidyselect. 195s Preparing to unpack .../262-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 195s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 195s Selecting previously unselected package r-cran-dplyr. 195s Preparing to unpack .../263-r-cran-dplyr_1.1.4-4_amd64.deb ... 195s Unpacking r-cran-dplyr (1.1.4-4) ... 195s Selecting previously unselected package r-cran-purrr. 195s Preparing to unpack .../264-r-cran-purrr_1.0.4-1_amd64.deb ... 195s Unpacking r-cran-purrr (1.0.4-1) ... 195s Selecting previously unselected package r-cran-stringi. 195s Preparing to unpack .../265-r-cran-stringi_1.8.4-1build1_amd64.deb ... 195s Unpacking r-cran-stringi (1.8.4-1build1) ... 195s Selecting previously unselected package r-cran-stringr. 195s Preparing to unpack .../266-r-cran-stringr_1.5.1-1_all.deb ... 195s Unpacking r-cran-stringr (1.5.1-1) ... 195s Selecting previously unselected package r-cran-tidyr. 195s Preparing to unpack .../267-r-cran-tidyr_1.3.1-1_amd64.deb ... 195s Unpacking r-cran-tidyr (1.3.1-1) ... 195s Selecting previously unselected package r-cran-dbplyr. 195s Preparing to unpack .../268-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ... 195s Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ... 195s Selecting previously unselected package r-cran-filelock. 195s Preparing to unpack .../269-r-cran-filelock_1.0.3-1_amd64.deb ... 195s Unpacking r-cran-filelock (1.0.3-1) ... 195s Selecting previously unselected package r-bioc-biocfilecache. 196s Preparing to unpack .../270-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 196s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 196s Selecting previously unselected package r-cran-formatr. 196s Preparing to unpack .../271-r-cran-formatr_1.14-2_all.deb ... 196s Unpacking r-cran-formatr (1.14-2) ... 196s Selecting previously unselected package r-cran-lambda.r. 196s Preparing to unpack .../272-r-cran-lambda.r_1.2.4-2build1_all.deb ... 196s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 196s Selecting previously unselected package r-cran-futile.options. 196s Preparing to unpack .../273-r-cran-futile.options_1.0.1-3build1_all.deb ... 196s Unpacking r-cran-futile.options (1.0.1-3build1) ... 196s Selecting previously unselected package r-cran-futile.logger. 196s Preparing to unpack .../274-r-cran-futile.logger_1.4.3-4build1_all.deb ... 196s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 196s Selecting previously unselected package r-cran-snow. 196s Preparing to unpack .../275-r-cran-snow_1%3a0.4.4-2_all.deb ... 196s Unpacking r-cran-snow (1:0.4.4-2) ... 196s Selecting previously unselected package r-cran-codetools. 196s Preparing to unpack .../276-r-cran-codetools_0.2-20-1_all.deb ... 196s Unpacking r-cran-codetools (0.2-20-1) ... 196s Selecting previously unselected package r-cran-bh. 196s Preparing to unpack .../277-r-cran-bh_1.84.0-1_all.deb ... 196s Unpacking r-cran-bh (1.84.0-1) ... 196s Selecting previously unselected package r-bioc-biocparallel. 196s Preparing to unpack .../278-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 196s Unpacking r-bioc-biocparallel (1.40.0-2) ... 196s Selecting previously unselected package r-bioc-scaledmatrix. 196s Preparing to unpack .../279-r-bioc-scaledmatrix_1.14.0+dfsg-2_all.deb ... 196s Unpacking r-bioc-scaledmatrix (1.14.0+dfsg-2) ... 196s Selecting previously unselected package r-cran-irlba. 196s Preparing to unpack .../280-r-cran-irlba_2.3.5.1-4_amd64.deb ... 196s Unpacking r-cran-irlba (2.3.5.1-4) ... 196s Selecting previously unselected package r-cran-rsvd. 196s Preparing to unpack .../281-r-cran-rsvd_1.0.5-1_all.deb ... 196s Unpacking r-cran-rsvd (1.0.5-1) ... 196s Selecting previously unselected package r-bioc-biocsingular. 196s Preparing to unpack .../282-r-bioc-biocsingular_1.22.0+ds-2_amd64.deb ... 196s Unpacking r-bioc-biocsingular (1.22.0+ds-2) ... 196s Selecting previously unselected package r-cran-base64enc. 196s Preparing to unpack .../283-r-cran-base64enc_0.1-3-3_amd64.deb ... 196s Unpacking r-cran-base64enc (0.1-3-3) ... 196s Selecting previously unselected package r-cran-digest. 196s Preparing to unpack .../284-r-cran-digest_0.6.37-1_amd64.deb ... 196s Unpacking r-cran-digest (0.6.37-1) ... 196s Selecting previously unselected package r-cran-htmltools. 196s Preparing to unpack .../285-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 196s Unpacking r-cran-htmltools (0.5.8.1-1) ... 196s Selecting previously unselected package r-cran-evaluate. 196s Preparing to unpack .../286-r-cran-evaluate_1.0.3-1_all.deb ... 196s Unpacking r-cran-evaluate (1.0.3-1) ... 196s Selecting previously unselected package r-cran-xfun. 196s Preparing to unpack .../287-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 196s Unpacking r-cran-xfun (0.51+dfsg-1) ... 196s Selecting previously unselected package r-cran-highr. 196s Preparing to unpack .../288-r-cran-highr_0.11+dfsg-1_all.deb ... 196s Unpacking r-cran-highr (0.11+dfsg-1) ... 196s Selecting previously unselected package r-cran-yaml. 196s Preparing to unpack .../289-r-cran-yaml_2.3.10-1_amd64.deb ... 196s Unpacking r-cran-yaml (2.3.10-1) ... 196s Selecting previously unselected package libjs-mathjax. 196s Preparing to unpack .../290-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 196s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 198s Selecting previously unselected package r-cran-knitr. 198s Preparing to unpack .../291-r-cran-knitr_1.49+dfsg-1_all.deb ... 198s Unpacking r-cran-knitr (1.49+dfsg-1) ... 198s Selecting previously unselected package r-cran-jquerylib. 198s Preparing to unpack .../292-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 198s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 198s Selecting previously unselected package r-cran-fs. 198s Preparing to unpack .../293-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 198s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 198s Selecting previously unselected package r-cran-rappdirs. 198s Preparing to unpack .../294-r-cran-rappdirs_0.3.3-1_amd64.deb ... 198s Unpacking r-cran-rappdirs (0.3.3-1) ... 198s Selecting previously unselected package r-cran-sass. 198s Preparing to unpack .../295-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 198s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 198s Selecting previously unselected package r-cran-bslib. 198s Preparing to unpack .../296-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 198s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 198s Selecting previously unselected package r-cran-fontawesome. 198s Preparing to unpack .../297-r-cran-fontawesome_0.5.3-1_all.deb ... 198s Unpacking r-cran-fontawesome (0.5.3-1) ... 198s Selecting previously unselected package r-cran-tinytex. 198s Preparing to unpack .../298-r-cran-tinytex_0.56-1_all.deb ... 198s Unpacking r-cran-tinytex (0.56-1) ... 198s Selecting previously unselected package libjs-modernizr. 198s Preparing to unpack .../299-libjs-modernizr_3.13.0-0.1_all.deb ... 198s Unpacking libjs-modernizr (3.13.0-0.1) ... 198s Selecting previously unselected package r-cran-later. 198s Preparing to unpack .../300-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 198s Unpacking r-cran-later (1.4.1+dfsg-1) ... 198s Selecting previously unselected package r-cran-promises. 198s Preparing to unpack .../301-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 198s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 198s Selecting previously unselected package r-cran-httpuv. 198s Preparing to unpack .../302-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 198s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 198s Selecting previously unselected package r-cran-sourcetools. 198s Preparing to unpack .../303-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 198s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 198s Selecting previously unselected package r-cran-commonmark. 198s Preparing to unpack .../304-r-cran-commonmark_1.9.2-2_amd64.deb ... 198s Unpacking r-cran-commonmark (1.9.2-2) ... 198s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 198s Preparing to unpack .../305-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 198s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 198s Selecting previously unselected package r-cran-shiny. 198s Preparing to unpack .../306-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 198s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 198s Selecting previously unselected package r-cran-rmarkdown. 198s Preparing to unpack .../307-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 198s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 199s Selecting previously unselected package r-cran-bookdown. 199s Preparing to unpack .../308-r-cran-bookdown_0.42+dfsg-1_all.deb ... 199s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 199s Selecting previously unselected package r-cran-biocmanager. 199s Preparing to unpack .../309-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 199s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 199s Selecting previously unselected package tex-common. 199s Preparing to unpack .../310-tex-common_6.19_all.deb ... 199s Unpacking tex-common (6.19) ... 199s Selecting previously unselected package t1utils. 199s Preparing to unpack .../311-t1utils_1.41-4build3_amd64.deb ... 199s Unpacking t1utils (1.41-4build3) ... 199s Selecting previously unselected package texlive-binaries. 199s Preparing to unpack .../312-texlive-binaries_2024.20240313.70630+ds-6_amd64.deb ... 199s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ... 199s Selecting previously unselected package texlive-base. 199s Preparing to unpack .../313-texlive-base_2024.20250114-1_all.deb ... 199s Unpacking texlive-base (2024.20250114-1) ... 200s Selecting previously unselected package texlive-latex-base. 200s Preparing to unpack .../314-texlive-latex-base_2024.20250114-1_all.deb ... 200s Unpacking texlive-latex-base (2024.20250114-1) ... 201s Selecting previously unselected package texlive-bibtex-extra. 201s Preparing to unpack .../315-texlive-bibtex-extra_2024.20250114-1_all.deb ... 201s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 203s Selecting previously unselected package r-bioc-biocversion. 203s Preparing to unpack .../316-r-bioc-biocversion_3.20.0-2_all.deb ... 203s Unpacking r-bioc-biocversion (3.20.0-2) ... 203s Selecting previously unselected package r-bioc-biocstyle. 203s Preparing to unpack .../317-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 203s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 203s Selecting previously unselected package r-bioc-sparsematrixstats. 203s Preparing to unpack .../318-r-bioc-sparsematrixstats_1.18.0+dfsg-2_amd64.deb ... 203s Unpacking r-bioc-sparsematrixstats (1.18.0+dfsg-2) ... 203s Selecting previously unselected package r-bioc-delayedmatrixstats. 203s Preparing to unpack .../319-r-bioc-delayedmatrixstats_1.28.1+ds-1_all.deb ... 203s Unpacking r-bioc-delayedmatrixstats (1.28.1+ds-1) ... 203s Selecting previously unselected package r-cran-statmod. 203s Preparing to unpack .../320-r-cran-statmod_1.5.0-1_amd64.deb ... 203s Unpacking r-cran-statmod (1.5.0-1) ... 203s Selecting previously unselected package r-bioc-limma. 203s Preparing to unpack .../321-r-bioc-limma_3.62.2+dfsg-1_amd64.deb ... 203s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 203s Selecting previously unselected package r-cran-locfit. 203s Preparing to unpack .../322-r-cran-locfit_1.5-9.12-1_amd64.deb ... 203s Unpacking r-cran-locfit (1.5-9.12-1) ... 203s Selecting previously unselected package r-bioc-edger. 203s Preparing to unpack .../323-r-bioc-edger_4.4.2+dfsg-1_amd64.deb ... 203s Unpacking r-bioc-edger (4.4.2+dfsg-1) ... 203s Selecting previously unselected package r-cran-survival. 203s Preparing to unpack .../324-r-cran-survival_3.8-3-1_amd64.deb ... 203s Unpacking r-cran-survival (3.8-3-1) ... 203s Selecting previously unselected package r-bioc-genefilter. 203s Preparing to unpack .../325-r-bioc-genefilter_1.88.0-2_amd64.deb ... 203s Unpacking r-bioc-genefilter (1.88.0-2) ... 203s Selecting previously unselected package r-bioc-genomicranges. 203s Preparing to unpack .../326-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 203s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 203s Selecting previously unselected package r-bioc-graph. 203s Preparing to unpack .../327-r-bioc-graph_1.84.1-1_amd64.deb ... 203s Unpacking r-bioc-graph (1.84.1-1) ... 203s Selecting previously unselected package r-bioc-gseabase. 203s Preparing to unpack .../328-r-bioc-gseabase_1.68.0+ds-2_all.deb ... 203s Unpacking r-bioc-gseabase (1.68.0+ds-2) ... 203s Selecting previously unselected package r-bioc-summarizedexperiment. 203s 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r-bioc-rhdf5lib. 204s Preparing to unpack .../334-r-bioc-rhdf5lib_1.28.0+dfsg-2build1_amd64.deb ... 204s Unpacking r-bioc-rhdf5lib (1.28.0+dfsg-2build1) ... 204s Selecting previously unselected package r-bioc-rhdf5filters. 204s Preparing to unpack .../335-r-bioc-rhdf5filters_1.18.0+dfsg-2_amd64.deb ... 204s Unpacking r-bioc-rhdf5filters (1.18.0+dfsg-2) ... 204s Selecting previously unselected package r-bioc-rhdf5. 204s Preparing to unpack .../336-r-bioc-rhdf5_2.50.2+dfsg-1build1_amd64.deb ... 204s Unpacking r-bioc-rhdf5 (2.50.2+dfsg-1build1) ... 204s Selecting previously unselected package r-bioc-hdf5array. 204s Preparing to unpack .../337-r-bioc-hdf5array_1.34.0-2build1_amd64.deb ... 204s Unpacking r-bioc-hdf5array (1.34.0-2build1) ... 204s Selecting previously unselected package r-bioc-gsva. 204s Preparing to unpack .../338-r-bioc-gsva_2.0.5+ds-1_amd64.deb ... 204s Unpacking r-bioc-gsva (2.0.5+ds-1) ... 204s Selecting previously unselected package r-bioc-org.hs.eg.db. 204s Preparing 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triggers for libc-bin (2.41-1ubuntu2) ... 214s Processing triggers for man-db (2.13.0-1) ... 216s Processing triggers for install-info (7.1.1-1) ... 216s Processing triggers for tex-common (6.19) ... 216s Running updmap-sys. This may take some time... done. 216s Running mktexlsr /var/lib/texmf ... done. 216s Building format(s) --all. 249s This may take some time... done. 249s autopkgtest [22:03:26]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 249s autopkgtest [22:03:26]: test pkg-r-autopkgtest: [----------------------- 249s Test: Try to load the R library GSVA 249s 249s R version 4.4.3 (2025-02-28) -- "Trophy Case" 249s Copyright (C) 2025 The R Foundation for Statistical Computing 249s Platform: x86_64-pc-linux-gnu 249s 249s R is free software and comes with ABSOLUTELY NO WARRANTY. 249s You are welcome to redistribute it under certain conditions. 249s Type 'license()' or 'licence()' for distribution details. 249s 249s R is a collaborative project with many contributors. 249s Type 'contributors()' for more information and 249s 'citation()' on how to cite R or R packages in publications. 249s 249s Type 'demo()' for some demos, 'help()' for on-line help, or 249s 'help.start()' for an HTML browser interface to help. 249s Type 'q()' to quit R. 249s 249s > library('GSVA') 259s > 259s > 259s Other tests are currently unsupported! 259s They will be progressively added. 260s autopkgtest [22:03:37]: test pkg-r-autopkgtest: -----------------------] 260s pkg-r-autopkgtest PASS 260s autopkgtest [22:03:37]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 260s autopkgtest [22:03:37]: @@@@@@@@@@@@@@@@@@@@ summary 260s pkg-r-autopkgtest PASS 279s nova [W] Skipping flock for amd64 279s Creating nova instance adt-plucky-amd64-r-bioc-gsva-20250315-215917-juju-7f2275-prod-proposed-migration-environment-15-a97ac9d9-9c8c-4e9b-9793-1cbe92254883 from image adt/ubuntu-plucky-amd64-server-20250306.img (UUID 60d877d7-b74c-4f24-920d-f4570db0a338)... 279s nova [W] Timed out waiting for 2c17cbdd-b869-4033-a30e-5a2ad53a8275 to get deleted.