0s autopkgtest [21:58:55]: starting date and time: 2025-03-15 21:58:55+0000 0s autopkgtest [21:58:55]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [21:58:55]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.maii076e/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-graph --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-20.secgroup --name adt-plucky-amd64-r-bioc-graph-20250315-215855-juju-7f2275-prod-proposed-migration-environment-2-9efaa0c3-cd2d-4c27-84be-33eb068e5871 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 48s autopkgtest [21:59:43]: testbed dpkg architecture: amd64 48s autopkgtest [21:59:43]: testbed apt version: 2.9.31ubuntu1 49s autopkgtest [21:59:44]: @@@@@@@@@@@@@@@@@@@@ test bed setup 49s autopkgtest [21:59:44]: testbed release detected to be: None 50s autopkgtest [21:59:45]: updating testbed package index (apt update) 50s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 50s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 51s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 51s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 51s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 51s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 51s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 51s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 51s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 51s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 51s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 51s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 51s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 51s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 51s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 51s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 51s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 51s Fetched 1265 kB in 1s (1432 kB/s) 52s Reading package lists... 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 54s Calculating upgrade... 54s Calculating upgrade... 54s The following package was automatically installed and is no longer required: 54s libnl-genl-3-200 54s Use 'sudo apt autoremove' to remove it. 54s The following NEW packages will be installed: 54s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 54s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 54s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 54s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 54s The following packages will be upgraded: 54s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 54s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 54s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 54s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 54s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 54s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 54s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 54s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 54s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 54s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 54s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 54s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 54s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 54s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 54s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 54s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 54s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 54s parted pci.ids pciutils pinentry-curses python-apt-common python3 54s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 54s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 54s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 54s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 54s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 54s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 54s xz-utils 54s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 54s Need to get 829 MB of archives. 54s After this operation, 325 MB of additional disk space will be used. 54s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 54s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 54s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 55s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 55s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 55s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 55s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 55s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 55s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 55s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 55s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 55s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 55s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 55s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 55s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 55s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 55s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 55s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 55s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 55s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 55s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 55s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 55s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 55s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 55s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 55s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 55s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 55s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 55s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 55s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 55s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 55s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 55s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 55s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 55s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 55s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 55s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 55s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 56s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 56s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 56s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 56s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 56s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 56s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 56s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 56s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 56s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 56s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 56s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 56s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 56s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 56s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 56s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 56s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 56s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 56s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 56s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 56s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 56s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 56s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 56s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 56s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 56s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 56s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 56s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 56s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 56s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 56s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 56s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 56s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 56s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 56s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 56s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 56s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 56s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 56s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 56s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 56s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 56s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 56s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 56s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 56s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 56s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 56s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 56s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 56s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 56s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 56s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 56s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 56s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 56s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 56s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 56s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 56s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 56s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 56s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 56s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 56s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 56s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 56s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 56s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 57s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 57s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 57s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 57s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 57s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 57s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 57s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 57s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 76s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 76s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 76s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 76s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 76s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 76s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 76s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 76s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 78s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 78s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 82s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 82s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 82s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 82s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 82s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 82s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 83s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 83s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 83s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 83s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 83s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 83s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 83s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 83s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 83s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 83s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 83s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 83s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 83s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 84s Preconfiguring packages ... 84s Fetched 829 MB in 29s (28.4 MB/s) 84s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 89s Preparing to unpack .../libaudit1_1%3a4.0.2-2ubuntu2_amd64.deb ... 89s Unpacking libaudit1:amd64 (1:4.0.2-2ubuntu2) over (1:4.0.2-2ubuntu1) ... 89s Setting up libaudit1:amd64 (1:4.0.2-2ubuntu2) ... 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 89s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu6_amd64.deb ... 89s Unpacking libseccomp2:amd64 (2.5.5-1ubuntu6) over (2.5.5-1ubuntu5) ... 89s Setting up libseccomp2:amd64 (2.5.5-1ubuntu6) ... 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 89s Preparing to unpack .../libselinux1_3.7-3ubuntu3_amd64.deb ... 89s Unpacking libselinux1:amd64 (3.7-3ubuntu3) over (3.7-3ubuntu2) ... 89s Setting up libselinux1:amd64 (3.7-3ubuntu3) ... 90s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 90s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 90s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 90s Setting up apt (2.9.33) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 91s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 91s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 91s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 91s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 91s Setting up python3-minimal (3.13.2-2) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 91s Preparing to unpack .../0-python3_3.13.2-2_amd64.deb ... 91s Unpacking python3 (3.13.2-2) over (3.13.2-1) ... 91s Preparing to unpack .../1-libpython3.13_3.13.2-2_amd64.deb ... 91s Unpacking libpython3.13:amd64 (3.13.2-2) over (3.13.2-1) ... 91s Preparing to unpack .../2-media-types_13.0.0_all.deb ... 91s Unpacking media-types (13.0.0) over (12.0.0) ... 91s Preparing to unpack .../3-libncurses6_6.5+20250216-2_amd64.deb ... 91s Unpacking libncurses6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 91s Preparing to unpack .../4-libncursesw6_6.5+20250216-2_amd64.deb ... 91s Unpacking libncursesw6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 91s Preparing to unpack .../5-libtinfo6_6.5+20250216-2_amd64.deb ... 91s Unpacking libtinfo6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 91s Setting up libtinfo6:amd64 (6.5+20250216-2) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 91s Preparing to unpack .../0-libsqlite3-0_3.46.1-2_amd64.deb ... 91s Unpacking libsqlite3-0:amd64 (3.46.1-2) over (3.46.1-1) ... 91s Preparing to unpack .../1-python3.13_3.13.2-2_amd64.deb ... 91s Unpacking python3.13 (3.13.2-2) over (3.13.2-1) ... 91s Preparing to unpack .../2-python3.13-minimal_3.13.2-2_amd64.deb ... 91s Unpacking python3.13-minimal (3.13.2-2) over (3.13.2-1) ... 91s Preparing to unpack .../3-libpython3.13-minimal_3.13.2-2_amd64.deb ... 91s Unpacking libpython3.13-minimal:amd64 (3.13.2-2) over (3.13.2-1) ... 92s Preparing to unpack .../4-libpython3.13-stdlib_3.13.2-2_amd64.deb ... 92s Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 92s Preparing to unpack .../5-libpython3-stdlib_3.13.2-2_amd64.deb ... 92s Unpacking libpython3-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 92s Preparing to unpack .../6-rsync_3.4.1+ds1-3_amd64.deb ... 92s Unpacking rsync (3.4.1+ds1-3) over (3.4.1-0syncable1) ... 92s Selecting previously unselected package libdebuginfod-common. 92s Preparing to unpack .../7-libdebuginfod-common_0.192-4_all.deb ... 92s Unpacking libdebuginfod-common (0.192-4) ... 92s Preparing to unpack .../8-libsemanage-common_3.7-2.1build1_all.deb ... 92s Unpacking libsemanage-common (3.7-2.1build1) over (3.7-2.1) ... 92s Setting up libsemanage-common (3.7-2.1build1) ... 92s (Reading database ... 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over (0.21.0-2ubuntu1) ... 107s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 107s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 107s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 107s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 107s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 107s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 107s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 107s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 108s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 108s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 108s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 108s Setting up media-types (13.0.0) ... 108s Installing new version of config file /etc/mime.types ... 108s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 108s Setting up ubuntu-kernel-accessories (1.549) ... 108s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 108s Setting up pci.ids (0.0~2025.03.09-1) ... 108s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 108s Setting up apt-utils (2.9.33) ... 108s Setting up libdebuginfod-common (0.192-4) ... 108s Setting up exfatprogs (1.2.8-1) ... 108s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 108s Setting up bpftool (7.6.0+6.14.0-10.10) ... 108s Setting up libestr0:amd64 (0.1.11-2) ... 108s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 108s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 108s Setting up dosfstools (4.2-1.2) ... 108s Setting up rsyslog (8.2412.0-2ubuntu2) ... 108s info: The user `syslog' is already a member of `adm'. 109s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 109s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 109s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 109s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 109s Setting up systemd (257.3-1ubuntu3) ... 109s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 109s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 110s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 110s Setting up libparted2t64:amd64 (3.6-5) ... 110s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 110s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 110s Setting up linux-headers-generic (6.14.0-10.10) ... 110s Setting up libjemalloc2:amd64 (5.3.0-3) ... 110s Setting up locales (2.41-1ubuntu1) ... 110s Installing new version of config file /etc/locale.alias ... 111s Generating locales (this might take a while)... 113s en_US.UTF-8... done 113s Generation complete. 113s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 113s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 113s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 113s Installing new version of config file /etc/apparmor.d/fusermount3 ... 113s Installing new version of config file /etc/apparmor.d/lsusb ... 113s Installing new version of config file /etc/apparmor.d/openvpn ... 114s Reloading AppArmor profiles 115s Setting up libftdi1-2:amd64 (1.5-8build1) ... 115s Setting up libglib2.0-data (2.84.0-1) ... 115s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 115s Setting up libncurses6:amd64 (6.5+20250216-2) ... 115s Setting up strace (6.13+ds-1ubuntu1) ... 115s Setting up xz-utils (5.6.4-1) ... 115s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 116s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 116s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 116s Setting up udev (257.3-1ubuntu3) ... 117s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 119s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 119s Setting up libpci3:amd64 (1:3.13.0-2) ... 119s Setting up whiptail (0.52.24-4ubuntu2) ... 119s Setting up python-apt-common (2.9.9build1) ... 119s Setting up pnp.ids (0.393-3) ... 119s Setting up libnl-3-200:amd64 (3.7.0-1) ... 119s Setting up python3.13-minimal (3.13.2-2) ... 120s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 120s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 120s Setting up libc-dev-bin (2.41-1ubuntu1) ... 120s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 120s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 120s Setting up rsync (3.4.1+ds1-3) ... 121s rsync.service is a disabled or a static unit not running, not starting it. 121s Setting up python3.13-gdbm (3.13.2-2) ... 121s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 121s Setting up systemd-resolved (257.3-1ubuntu3) ... 121s Setting up initramfs-tools-bin (0.146ubuntu1) ... 121s Setting up ncurses-term (6.5+20250216-2) ... 121s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 121s Setting up libpython3.13:amd64 (3.13.2-2) ... 121s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 121s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 121s Setting up systemd-sysv (257.3-1ubuntu3) ... 121s Setting up linux-headers-virtual (6.14.0-10.10) ... 121s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 121s Setting up python3.13 (3.13.2-2) ... 122s Setting up htop (3.4.0-2) ... 122s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 124s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 124s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 124s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 124s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 124s Setting up parted (3.6-5) ... 124s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 124s Setting up python3 (3.13.2-2) ... 125s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 125s Setting up python3-markupsafe (2.1.5-1build4) ... 125s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 127s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 127s Setting up hwdata (0.393-3) ... 127s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 127s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 127s No schema files found: doing nothing. 127s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 127s Setting up linux-perf (6.14.0-10.10) ... 127s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 127s Setting up pciutils (1:3.13.0-2) ... 127s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 127s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 127s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 127s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 128s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 128s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 128s Setting up curl (8.12.1-3ubuntu1) ... 128s Setting up linux-image-virtual (6.14.0-10.10) ... 128s Setting up initramfs-tools-core (0.146ubuntu1) ... 128s Setting up linux-tools-common (6.14.0-10.10) ... 128s Setting up python3-systemd (235-1build6) ... 128s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 128s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 128s Setting up linux-image-generic (6.14.0-10.10) ... 128s Setting up python3-dbus (1.3.2-5build5) ... 128s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 128s Setting up initramfs-tools (0.146ubuntu1) ... 128s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 128s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 128s update-initramfs: deferring update (trigger activated) 128s Setting up linux-generic (6.14.0-10.10) ... 128s Setting up ubuntu-minimal (1.549) ... 128s Setting up python3-apt (2.9.9build1) ... 128s Setting up python3-bcrypt (4.2.0-2.1build1) ... 128s Setting up python3-yaml (6.0.2-1build2) ... 128s Setting up libfwupd3:amd64 (2.0.6-4) ... 128s Setting up python3-lazr.uri (1.0.6-6) ... 128s Setting up binutils (2.44-3ubuntu1) ... 128s Setting up ubuntu-standard (1.549) ... 128s Setting up cloud-init-base (25.1-0ubuntu3) ... 130s Setting up linux-virtual (6.14.0-10.10) ... 130s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 130s Setting up python3-gi (3.50.0-4build1) ... 130s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 130s Setting up fwupd (2.0.6-4) ... 131s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 131s fwupd.service is a disabled or a static unit not running, not starting it. 131s Setting up cloud-init (25.1-0ubuntu3) ... 131s Processing triggers for man-db (2.13.0-1) ... 133s Processing triggers for dbus (1.16.2-1ubuntu1) ... 133s Processing triggers for shared-mime-info (2.4-5) ... 133s Warning: program compiled against libxml 212 using older 209 133s Processing triggers for libc-bin (2.41-1ubuntu1) ... 133s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 133s /etc/kernel/postinst.d/initramfs-tools: 133s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 133s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 144s /etc/kernel/postinst.d/zz-update-grub: 144s Sourcing file `/etc/default/grub' 144s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 144s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 144s Generating grub configuration file ... 144s Found linux image: /boot/vmlinuz-6.14.0-10-generic 144s Found initrd image: /boot/initrd.img-6.14.0-10-generic 145s Found linux image: /boot/vmlinuz-6.12.0-16-generic 145s Found initrd image: /boot/initrd.img-6.12.0-16-generic 145s Found linux image: /boot/vmlinuz-6.11.0-8-generic 145s Found initrd image: /boot/initrd.img-6.11.0-8-generic 145s Warning: os-prober will not be executed to detect other bootable partitions. 145s Systems on them will not be added to the GRUB boot configuration. 145s Check GRUB_DISABLE_OS_PROBER documentation entry. 145s Adding boot menu entry for UEFI Firmware Settings ... 145s done 145s Processing triggers for initramfs-tools (0.146ubuntu1) ... 145s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 145s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 157s Reading package lists... 157s Building dependency tree... 157s Reading state information... 158s Solving dependencies... 158s The following packages will be REMOVED: 158s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 158s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 158s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 158s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 158s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 158s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 158s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 158s linux-tools-6.12.0-16-generic* 158s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 158s After this operation, 545 MB disk space will be freed. 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 158s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 158s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 158s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 158s Removing libpython3.12t64:amd64 (3.12.9-1) ... 158s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 158s Removing libnsl2:amd64 (1.3.0-3build3) ... 158s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 158s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 159s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 161s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 162s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 164s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 164s /etc/kernel/postrm.d/initramfs-tools: 164s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 164s /etc/kernel/postrm.d/zz-update-grub: 164s Sourcing file `/etc/default/grub' 164s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 164s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 164s Generating grub configuration file ... 165s Found linux image: /boot/vmlinuz-6.14.0-10-generic 165s Found initrd image: /boot/initrd.img-6.14.0-10-generic 165s Found linux image: /boot/vmlinuz-6.12.0-16-generic 165s Found initrd image: /boot/initrd.img-6.12.0-16-generic 165s Warning: os-prober will not be executed to detect other bootable partitions. 165s Systems on them will not be added to the GRUB boot configuration. 165s Check GRUB_DISABLE_OS_PROBER documentation entry. 165s Adding boot menu entry for UEFI Firmware Settings ... 165s done 165s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 165s W: Removing the running kernel 165s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 165s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 165s /etc/kernel/postrm.d/initramfs-tools: 165s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 165s /etc/kernel/postrm.d/zz-update-grub: 165s Sourcing file `/etc/default/grub' 165s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 165s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 165s Generating grub configuration file ... 165s Found linux image: /boot/vmlinuz-6.14.0-10-generic 165s Found initrd image: /boot/initrd.img-6.14.0-10-generic 166s Warning: os-prober will not be executed to detect other bootable partitions. 166s Systems on them will not be added to the GRUB boot configuration. 166s Check GRUB_DISABLE_OS_PROBER documentation entry. 166s Adding boot menu entry for UEFI Firmware Settings ... 166s done 166s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 166s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 168s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 168s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 168s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 168s Processing triggers for libc-bin (2.41-1ubuntu1) ... 168s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 168s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 168s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 168s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 168s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 168s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 168s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 168s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 168s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 168s autopkgtest [22:01:43]: upgrading testbed (apt dist-upgrade and autopurge) 169s Reading package lists... 169s Building dependency tree... 169s Reading state information... 169s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 169s Starting 2 pkgProblemResolver with broken count: 0 169s Done 170s Entering ResolveByKeep 170s 170s Calculating upgrade... 170s The following packages will be upgraded: 170s libc-bin libc-dev-bin libc6 libc6-dev locales 171s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 171s Need to get 10.5 MB of archives. 171s After this operation, 1024 B of additional disk space will be used. 171s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 171s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 171s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 171s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 171s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 172s Preconfiguring packages ... 172s Fetched 10.5 MB in 1s (10.7 MB/s) 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 172s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 172s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 172s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 172s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 172s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 172s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 173s Setting up libc6:amd64 (2.41-1ubuntu2) ... 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 173s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 173s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 173s Setting up libc-bin (2.41-1ubuntu2) ... 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 173s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 173s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 173s Setting up locales (2.41-1ubuntu2) ... 174s Generating locales (this might take a while)... 175s en_US.UTF-8... done 175s Generation complete. 175s Setting up libc-dev-bin (2.41-1ubuntu2) ... 175s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 175s Processing triggers for man-db (2.13.0-1) ... 176s Processing triggers for systemd (257.3-1ubuntu3) ... 177s Reading package lists... 177s Building dependency tree... 177s Reading state information... 177s Starting pkgProblemResolver with broken count: 0 177s Starting 2 pkgProblemResolver with broken count: 0 177s Done 178s Solving dependencies... 178s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 178s autopkgtest [22:01:53]: rebooting testbed after setup commands that affected boot 201s autopkgtest [22:02:16]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 204s autopkgtest [22:02:19]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-graph 206s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-graph 1.84.1-1 (dsc) [2083 B] 206s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-graph 1.84.1-1 (tar) [1505 kB] 206s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-graph 1.84.1-1 (diff) [5492 B] 207s gpgv: Signature made Sun Jan 12 11:14:21 2025 UTC 207s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 207s gpgv: issuer "crusoe@debian.org" 207s gpgv: Can't check signature: No public key 207s dpkg-source: warning: cannot verify inline signature for ./r-bioc-graph_1.84.1-1.dsc: no acceptable signature found 207s autopkgtest [22:02:22]: testing package r-bioc-graph version 1.84.1-1 207s autopkgtest [22:02:22]: build not needed 211s autopkgtest [22:02:26]: test pkg-r-autopkgtest: preparing testbed 211s Reading package lists... 211s Building dependency tree... 211s Reading state information... 212s Starting pkgProblemResolver with broken count: 0 212s Starting 2 pkgProblemResolver with broken count: 0 212s Done 212s The following NEW packages will be installed: 212s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 212s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 212s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 212s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 212s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 212s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 212s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 212s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 212s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 212s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 212s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 212s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 212s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 212s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 212s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 212s libjs-popper.js libjs-prettify libjs-sifter.js 212s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 212s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 212s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 212s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 212s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 212s libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev 212s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 212s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 212s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 212s libxss1 libxt6t64 libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv 212s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 212s r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocstyle 212s r-bioc-biocversion r-bioc-graph r-bioc-rbgl r-cran-base64enc r-cran-bh 212s r-cran-biocmanager r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 212s r-cran-cluster r-cran-commonmark r-cran-crayon r-cran-digest r-cran-evaluate 212s r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr 212s r-cran-htmltools r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr 212s r-cran-later r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise 212s r-cran-mime r-cran-pkgkitten r-cran-promises r-cran-r6 r-cran-rappdirs 212s r-cran-rcpp r-cran-rlang r-cran-rmarkdown r-cran-runit r-cran-sass 212s r-cran-shiny r-cran-sourcetools r-cran-sparsem r-cran-tinytex r-cran-withr 212s r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml t1utils tex-common 212s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 212s x11-common xdg-utils zip zlib1g-dev 212s 0 upgraded, 203 newly installed, 0 to remove and 0 not upgraded. 212s Need to get 343 MB of archives. 212s After this operation, 1213 MB of additional disk space will be used. 212s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 213s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 213s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 213s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 213s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 213s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 213s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 213s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 213s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 213s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 214s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 214s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 214s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 214s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 214s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 214s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 214s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 215s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 215s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 215s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 215s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 216s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 216s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 216s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 216s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 216s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 216s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 216s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 216s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 216s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 216s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 216s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 217s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 217s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 217s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 217s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 217s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 217s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 217s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 218s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 218s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 218s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 218s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 218s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 218s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 218s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 218s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 218s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 218s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 218s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB] 218s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 218s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 218s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 218s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 218s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 218s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 218s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 218s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 218s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 218s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 218s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 218s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 218s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 218s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 218s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 219s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 219s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 219s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 219s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 219s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 219s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 219s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 219s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 219s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 219s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 219s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 219s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 219s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 219s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 219s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 219s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 219s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 219s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 219s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 219s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 219s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB] 219s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 220s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 220s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 220s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 220s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 220s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 220s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 220s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 220s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 220s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 220s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 220s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 220s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 220s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 220s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 220s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 220s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 220s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 221s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 221s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 221s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 221s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB] 221s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 221s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 221s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 221s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB] 221s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 221s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 221s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB] 221s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 221s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 221s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 221s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 221s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 221s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 221s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 221s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 221s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 221s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 221s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 221s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 221s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 221s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 221s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 221s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 222s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 222s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 222s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 222s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 222s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 222s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 222s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 223s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 223s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 223s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 223s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 223s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 223s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 223s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 223s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 223s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 223s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 223s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 223s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 223s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 223s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 223s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 223s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 223s Get:155 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 224s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 224s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 224s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 224s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 224s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 224s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 224s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 224s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 224s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 224s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 224s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 224s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 224s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 224s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 224s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 224s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 224s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 224s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 224s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 224s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 224s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 224s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 224s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 224s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 224s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 224s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 224s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 224s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 224s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 224s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 224s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 224s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 224s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 224s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB] 224s Get:190 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 224s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB] 225s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB] 226s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB] 226s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 229s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 229s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 229s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-graph amd64 1.84.1-1 [1298 kB] 229s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 229s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rbgl amd64 1.82.0+dfsg-2 [588 kB] 229s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cluster amd64 2.1.8.1-1 [579 kB] 229s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 229s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sparsem amd64 1.84-2-1 [813 kB] 229s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 230s Preconfiguring packages ... 230s Fetched 343 MB in 17s (20.0 MB/s) 230s Selecting previously unselected package libisl23:amd64. 230s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 230s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 230s Unpacking libisl23:amd64 (0.27-1) ... 230s Selecting previously unselected package libmpc3:amd64. 230s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 230s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 230s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 230s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 230s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 231s Selecting previously unselected package cpp-14. 231s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 231s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 231s Selecting previously unselected package cpp-x86-64-linux-gnu. 231s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 231s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 231s Selecting previously unselected package cpp. 231s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 231s Unpacking cpp (4:14.2.0-1ubuntu1) ... 231s Selecting previously unselected package libcc1-0:amd64. 231s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 231s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 231s Selecting previously unselected package libgomp1:amd64. 231s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 231s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 231s Selecting previously unselected package libitm1:amd64. 231s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 231s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 231s Selecting previously unselected package libasan8:amd64. 231s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 231s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 231s Selecting previously unselected package liblsan0:amd64. 231s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 231s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 231s Selecting previously unselected package libtsan2:amd64. 231s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 231s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 231s Selecting previously unselected package libubsan1:amd64. 231s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 231s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 231s Selecting previously unselected package libhwasan0:amd64. 231s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 231s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 231s Selecting previously unselected package libquadmath0:amd64. 231s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 231s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 231s Selecting previously unselected package libgcc-14-dev:amd64. 231s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 231s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 231s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 231s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 231s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 232s Selecting previously unselected package gcc-14. 232s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 232s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 232s Selecting previously unselected package gcc-x86-64-linux-gnu. 232s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 232s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 232s Selecting previously unselected package gcc. 232s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 232s Unpacking gcc (4:14.2.0-1ubuntu1) ... 232s Selecting previously unselected package libstdc++-14-dev:amd64. 232s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 232s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 232s Selecting previously unselected package g++-14-x86-64-linux-gnu. 232s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 232s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 232s Selecting previously unselected package g++-14. 232s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ... 232s Unpacking g++-14 (14.2.0-17ubuntu3) ... 232s Selecting previously unselected package g++-x86-64-linux-gnu. 232s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 232s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 232s Selecting previously unselected package g++. 232s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 232s Unpacking g++ (4:14.2.0-1ubuntu1) ... 232s Selecting previously unselected package build-essential. 232s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 232s Unpacking build-essential (12.10ubuntu1) ... 232s Selecting previously unselected package dctrl-tools. 232s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 232s Unpacking dctrl-tools (2.24-3build3) ... 232s Selecting previously unselected package fonts-dejavu-mono. 232s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 232s Unpacking fonts-dejavu-mono (2.37-8) ... 232s Selecting previously unselected package fonts-dejavu-core. 232s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 232s Unpacking fonts-dejavu-core (2.37-8) ... 232s Selecting previously unselected package fontconfig-config. 232s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 233s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 233s Selecting previously unselected package libfontconfig1:amd64. 233s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 233s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 233s Selecting previously unselected package fontconfig. 233s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 233s Unpacking fontconfig (2.15.0-2ubuntu1) ... 233s Selecting previously unselected package fonts-font-awesome. 233s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 233s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 233s Selecting previously unselected package fonts-glyphicons-halflings. 233s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 233s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 233s Selecting previously unselected package fonts-lmodern. 233s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ... 233s Unpacking fonts-lmodern (2.005-1) ... 233s Selecting previously unselected package fonts-mathjax. 233s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 233s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 233s Selecting previously unselected package libgfortran5:amd64. 233s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 233s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 233s Selecting previously unselected package libgfortran-14-dev:amd64. 233s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 233s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 233s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 233s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 233s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 233s Selecting previously unselected package gfortran-14. 233s Preparing to unpack .../039-gfortran-14_14.2.0-17ubuntu3_amd64.deb ... 233s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 233s Selecting previously unselected package gfortran-x86-64-linux-gnu. 233s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 233s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 234s Selecting previously unselected package gfortran. 234s Preparing to unpack .../041-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 234s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 234s Selecting previously unselected package icu-devtools. 234s Preparing to unpack .../042-icu-devtools_76.1-1ubuntu2_amd64.deb ... 234s Unpacking icu-devtools (76.1-1ubuntu2) ... 234s Selecting previously unselected package javascript-common. 234s Preparing to unpack .../043-javascript-common_12_all.deb ... 234s Unpacking javascript-common (12) ... 234s Selecting previously unselected package libio-string-perl. 234s Preparing to unpack .../044-libio-string-perl_1.08-4_all.deb ... 234s Unpacking libio-string-perl (1.08-4) ... 234s Selecting previously unselected package liblatex-tounicode-perl. 234s Preparing to unpack .../045-liblatex-tounicode-perl_0.55-1_all.deb ... 234s Unpacking liblatex-tounicode-perl (0.55-1) ... 234s Selecting previously unselected package libbibtex-parser-perl. 234s Preparing to unpack .../046-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 234s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 234s Selecting previously unselected package libblas3:amd64. 234s Preparing to unpack .../047-libblas3_3.12.1-2_amd64.deb ... 234s Unpacking libblas3:amd64 (3.12.1-2) ... 234s Selecting previously unselected package libblas-dev:amd64. 234s Preparing to unpack .../048-libblas-dev_3.12.1-2_amd64.deb ... 234s Unpacking libblas-dev:amd64 (3.12.1-2) ... 234s Selecting previously unselected package libboost1.83-dev:amd64. 234s Preparing to unpack .../049-libboost1.83-dev_1.83.0-4.1ubuntu2_amd64.deb ... 234s Unpacking libboost1.83-dev:amd64 (1.83.0-4.1ubuntu2) ... 236s Selecting previously unselected package libboost-dev:amd64. 236s Preparing to unpack .../050-libboost-dev_1.83.0.2ubuntu1_amd64.deb ... 236s Unpacking libboost-dev:amd64 (1.83.0.2ubuntu1) ... 236s Selecting previously unselected package libbz2-dev:amd64. 236s Preparing to unpack .../051-libbz2-dev_1.0.8-6_amd64.deb ... 236s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 236s Selecting previously unselected package libpixman-1-0:amd64. 236s Preparing to unpack .../052-libpixman-1-0_0.44.0-3_amd64.deb ... 236s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 236s Selecting previously unselected package libxcb-render0:amd64. 236s Preparing to unpack .../053-libxcb-render0_1.17.0-2_amd64.deb ... 236s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 236s Selecting previously unselected package libxcb-shm0:amd64. 236s Preparing to unpack .../054-libxcb-shm0_1.17.0-2_amd64.deb ... 236s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 236s Selecting previously unselected package libxrender1:amd64. 236s Preparing to unpack .../055-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 236s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 236s Selecting previously unselected package libcairo2:amd64. 236s Preparing to unpack .../056-libcairo2_1.18.2-2_amd64.deb ... 236s Unpacking libcairo2:amd64 (1.18.2-2) ... 236s Selecting previously unselected package libdatrie1:amd64. 236s Preparing to unpack .../057-libdatrie1_0.2.13-3build1_amd64.deb ... 236s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 236s Selecting previously unselected package libdeflate0:amd64. 236s Preparing to unpack .../058-libdeflate0_1.23-1_amd64.deb ... 236s Unpacking libdeflate0:amd64 (1.23-1) ... 236s Selecting previously unselected package libdeflate-dev:amd64. 236s Preparing to unpack .../059-libdeflate-dev_1.23-1_amd64.deb ... 236s Unpacking libdeflate-dev:amd64 (1.23-1) ... 236s Selecting previously unselected package libgraphite2-3:amd64. 236s Preparing to unpack .../060-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 236s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 236s Selecting previously unselected package libharfbuzz0b:amd64. 236s Preparing to unpack .../061-libharfbuzz0b_10.2.0-1_amd64.deb ... 236s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 236s Selecting previously unselected package x11-common. 236s Preparing to unpack .../062-x11-common_1%3a7.7+23ubuntu3_all.deb ... 236s Unpacking x11-common (1:7.7+23ubuntu3) ... 236s Selecting previously unselected package libice6:amd64. 236s Preparing to unpack .../063-libice6_2%3a1.1.1-1_amd64.deb ... 236s Unpacking libice6:amd64 (2:1.1.1-1) ... 236s Selecting previously unselected package 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previously unselected package libkpathsea6:amd64. 238s Preparing to unpack .../085-libkpathsea6_2024.20240313.70630+ds-6_amd64.deb ... 238s Unpacking libkpathsea6:amd64 (2024.20240313.70630+ds-6) ... 238s Selecting previously unselected package liblapack3:amd64. 238s Preparing to unpack .../086-liblapack3_3.12.1-2_amd64.deb ... 238s Unpacking liblapack3:amd64 (3.12.1-2) ... 238s Selecting previously unselected package liblapack-dev:amd64. 238s Preparing to unpack .../087-liblapack-dev_3.12.1-2_amd64.deb ... 238s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 238s Selecting previously unselected package liblerc4:amd64. 238s Preparing to unpack .../088-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 238s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 238s Selecting previously unselected package liblua5.4-0:amd64. 238s Preparing to unpack .../089-liblua5.4-0_5.4.7-1_amd64.deb ... 238s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 238s Selecting previously unselected package libmpfi0:amd64. 238s 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libpcre2-32-0:amd64 (10.45-1) ... 238s Selecting previously unselected package libpcre2-posix3:amd64. 238s Preparing to unpack .../101-libpcre2-posix3_10.45-1_amd64.deb ... 238s Unpacking libpcre2-posix3:amd64 (10.45-1) ... 238s Selecting previously unselected package libpcre2-dev:amd64. 238s Preparing to unpack .../102-libpcre2-dev_10.45-1_amd64.deb ... 238s Unpacking libpcre2-dev:amd64 (10.45-1) ... 238s Selecting previously unselected package libpkgconf3:amd64. 238s Preparing to unpack .../103-libpkgconf3_1.8.1-4_amd64.deb ... 238s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 238s Selecting previously unselected package zlib1g-dev:amd64. 238s Preparing to unpack .../104-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 238s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 238s Selecting previously unselected package libpng-dev:amd64. 238s Preparing to unpack .../105-libpng-dev_1.6.47-1_amd64.deb ... 238s Unpacking libpng-dev:amd64 (1.6.47-1) ... 238s Selecting previously unselected package libpotrace0:amd64. 239s Preparing to unpack .../106-libpotrace0_1.16-2build1_amd64.deb ... 239s Unpacking libpotrace0:amd64 (1.16-2build1) ... 239s Selecting previously unselected package libptexenc1:amd64. 239s Preparing to unpack .../107-libptexenc1_2024.20240313.70630+ds-6_amd64.deb ... 239s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-6) ... 239s Selecting previously unselected package libreadline-dev:amd64. 239s Preparing to unpack .../108-libreadline-dev_8.2-6_amd64.deb ... 239s Unpacking libreadline-dev:amd64 (8.2-6) ... 239s Selecting previously unselected package libsharpyuv0:amd64. 239s Preparing to unpack .../109-libsharpyuv0_1.5.0-0.1_amd64.deb ... 239s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 239s Selecting previously unselected package libsm6:amd64. 239s Preparing to unpack .../110-libsm6_2%3a1.2.4-1_amd64.deb ... 239s Unpacking libsm6:amd64 (2:1.2.4-1) ... 239s Selecting previously unselected package libsynctex2:amd64. 239s 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(1:1.2.1-1.2build1) ... 239s Selecting previously unselected package libxmu6:amd64. 239s Preparing to unpack .../122-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 239s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 239s Selecting previously unselected package libxpm4:amd64. 239s Preparing to unpack .../123-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 239s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 239s Selecting previously unselected package libxaw7:amd64. 239s Preparing to unpack .../124-libxaw7_2%3a1.0.16-1_amd64.deb ... 239s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 239s Selecting previously unselected package libxi6:amd64. 239s Preparing to unpack .../125-libxi6_2%3a1.8.2-1_amd64.deb ... 239s Unpacking libxi6:amd64 (2:1.8.2-1) ... 239s Selecting previously unselected package libzzip-0-13t64:amd64. 239s Preparing to unpack .../126-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 239s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 239s Selecting previously unselected package zip. 239s Preparing to unpack .../127-zip_3.0-14ubuntu2_amd64.deb ... 239s Unpacking zip (3.0-14ubuntu2) ... 239s Selecting previously unselected package unzip. 239s Preparing to unpack .../128-unzip_6.0-28ubuntu6_amd64.deb ... 239s Unpacking unzip (6.0-28ubuntu6) ... 239s Selecting previously unselected package xdg-utils. 239s Preparing to unpack .../129-xdg-utils_1.2.1-2ubuntu1_all.deb ... 239s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 239s Selecting previously unselected package r-base-core. 239s Preparing to unpack .../130-r-base-core_4.4.3-1_amd64.deb ... 239s Unpacking r-base-core (4.4.3-1) ... 240s Selecting previously unselected package r-cran-littler. 240s Preparing to unpack .../131-r-cran-littler_0.3.20-2_amd64.deb ... 240s Unpacking r-cran-littler (0.3.20-2) ... 240s Selecting previously unselected package littler. 240s Preparing to unpack .../132-littler_0.3.20-2_all.deb ... 240s Unpacking littler (0.3.20-2) ... 240s Selecting previously unselected package node-bootstrap-sass. 240s Preparing to unpack .../133-node-bootstrap-sass_3.4.3-2_all.deb ... 240s Unpacking node-bootstrap-sass (3.4.3-2) ... 240s Selecting previously unselected package node-html5shiv. 240s Preparing to unpack .../134-node-html5shiv_3.7.3+dfsg-5_all.deb ... 240s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 240s Selecting previously unselected package node-normalize.css. 240s Preparing to unpack .../135-node-normalize.css_8.0.1-5_all.deb ... 240s Unpacking node-normalize.css (8.0.1-5) ... 240s Selecting previously unselected package pandoc-data. 240s Preparing to unpack .../136-pandoc-data_3.1.11.1-3build1_all.deb ... 240s Unpacking pandoc-data (3.1.11.1-3build1) ... 240s Selecting previously unselected package pandoc. 240s Preparing to unpack .../137-pandoc_3.1.11.1+ds-2_amd64.deb ... 240s Unpacking pandoc (3.1.11.1+ds-2) ... 241s Selecting previously unselected package liblzma-dev:amd64. 241s Preparing to unpack .../138-liblzma-dev_5.6.4-1_amd64.deb ... 241s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 241s Selecting previously unselected package pkgconf-bin. 241s Preparing to unpack .../139-pkgconf-bin_1.8.1-4_amd64.deb ... 241s Unpacking pkgconf-bin (1.8.1-4) ... 241s Selecting previously unselected package pkgconf:amd64. 241s Preparing to unpack .../140-pkgconf_1.8.1-4_amd64.deb ... 241s Unpacking pkgconf:amd64 (1.8.1-4) ... 241s Selecting previously unselected package libtirpc-dev:amd64. 241s Preparing to unpack .../141-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 241s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 241s Selecting previously unselected package r-base-dev. 241s Preparing to unpack .../142-r-base-dev_4.4.3-1_all.deb ... 241s Unpacking r-base-dev (4.4.3-1) ... 241s Selecting previously unselected package pkg-r-autopkgtest. 241s Preparing to unpack .../143-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 241s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 241s Selecting previously unselected package r-bioc-biocgenerics. 241s Preparing to unpack .../144-r-bioc-biocgenerics_0.52.0-2_all.deb ... 241s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 241s Selecting previously unselected package r-cran-base64enc. 241s Preparing to unpack .../145-r-cran-base64enc_0.1-3-3_amd64.deb ... 241s Unpacking r-cran-base64enc (0.1-3-3) ... 241s Selecting previously unselected package r-cran-digest. 241s Preparing to unpack .../146-r-cran-digest_0.6.37-1_amd64.deb ... 241s Unpacking r-cran-digest (0.6.37-1) ... 241s Selecting previously unselected package r-cran-fastmap. 241s Preparing to unpack .../147-r-cran-fastmap_1.2.0-1_amd64.deb ... 241s Unpacking r-cran-fastmap (1.2.0-1) ... 241s Selecting previously unselected package r-cran-rlang. 241s Preparing to unpack .../148-r-cran-rlang_1.1.5-1_amd64.deb ... 241s Unpacking r-cran-rlang (1.1.5-1) ... 241s Selecting previously unselected package r-cran-htmltools. 241s Preparing to unpack .../149-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 241s Unpacking r-cran-htmltools (0.5.8.1-1) ... 241s Selecting previously unselected package r-cran-evaluate. 241s Preparing to unpack .../150-r-cran-evaluate_1.0.3-1_all.deb ... 241s Unpacking r-cran-evaluate (1.0.3-1) ... 241s Selecting previously unselected package r-cran-xfun. 241s Preparing to unpack .../151-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 241s Unpacking r-cran-xfun (0.51+dfsg-1) ... 241s Selecting previously unselected package r-cran-highr. 241s Preparing to unpack .../152-r-cran-highr_0.11+dfsg-1_all.deb ... 241s Unpacking r-cran-highr (0.11+dfsg-1) ... 241s Selecting previously unselected package r-cran-yaml. 241s Preparing to unpack .../153-r-cran-yaml_2.3.10-1_amd64.deb ... 241s Unpacking r-cran-yaml (2.3.10-1) ... 241s Selecting previously unselected package libjs-mathjax. 241s Preparing to unpack .../154-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 241s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 242s Selecting previously unselected package r-cran-knitr. 242s Preparing to unpack .../155-r-cran-knitr_1.49+dfsg-1_all.deb ... 242s Unpacking r-cran-knitr (1.49+dfsg-1) ... 242s Selecting previously unselected package r-cran-cachem. 242s Preparing to unpack .../156-r-cran-cachem_1.1.0-1_amd64.deb ... 242s Unpacking r-cran-cachem (1.1.0-1) ... 242s Selecting previously unselected package r-cran-jquerylib. 242s Preparing to unpack .../157-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 242s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 242s Selecting previously unselected package r-cran-jsonlite. 242s Preparing to unpack .../158-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 242s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 242s Selecting previously unselected package r-cran-cli. 242s Preparing to unpack .../159-r-cran-cli_3.6.4-1_amd64.deb ... 242s Unpacking r-cran-cli (3.6.4-1) ... 242s Selecting previously unselected package r-cran-glue. 242s Preparing to unpack .../160-r-cran-glue_1.8.0-1_amd64.deb ... 242s Unpacking r-cran-glue (1.8.0-1) ... 242s Selecting previously unselected package r-cran-lifecycle. 242s Preparing to 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r-cran-sass. 243s Preparing to unpack .../167-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 243s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 243s Selecting previously unselected package r-cran-bslib. 243s Preparing to unpack .../168-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 243s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 243s Selecting previously unselected package r-cran-fontawesome. 243s Preparing to unpack .../169-r-cran-fontawesome_0.5.3-1_all.deb ... 243s Unpacking r-cran-fontawesome (0.5.3-1) ... 243s Selecting previously unselected package r-cran-tinytex. 243s Preparing to unpack .../170-r-cran-tinytex_0.56-1_all.deb ... 243s Unpacking r-cran-tinytex (0.56-1) ... 243s Selecting previously unselected package libjs-modernizr. 243s Preparing to unpack .../171-libjs-modernizr_3.13.0-0.1_all.deb ... 243s Unpacking libjs-modernizr (3.13.0-0.1) ... 243s Selecting previously unselected package r-cran-pkgkitten. 243s Preparing to unpack .../172-r-cran-pkgkitten_0.2.4-1_all.deb ... 243s Unpacking r-cran-pkgkitten (0.2.4-1) ... 243s Selecting previously unselected package r-cran-rcpp. 243s Preparing to unpack .../173-r-cran-rcpp_1.0.14-1_amd64.deb ... 243s Unpacking r-cran-rcpp (1.0.14-1) ... 243s Selecting previously unselected package r-cran-later. 243s Preparing to unpack .../174-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 243s Unpacking r-cran-later (1.4.1+dfsg-1) ... 243s Selecting previously unselected package r-cran-magrittr. 243s Preparing to unpack .../175-r-cran-magrittr_2.0.3-1_amd64.deb ... 243s Unpacking r-cran-magrittr (2.0.3-1) ... 243s Selecting previously unselected package r-cran-promises. 243s Preparing to unpack .../176-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 243s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 243s Selecting previously unselected package r-cran-httpuv. 243s Preparing to unpack .../177-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 243s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 243s Selecting previously unselected package r-cran-xtable. 243s 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texlive-bibtex-extra (2024.20250114-1) ... 248s Selecting previously unselected package r-bioc-biocversion. 248s Preparing to unpack .../194-r-bioc-biocversion_3.20.0-2_all.deb ... 248s Unpacking r-bioc-biocversion (3.20.0-2) ... 248s Selecting previously unselected package r-bioc-biocstyle. 248s Preparing to unpack .../195-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 248s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 248s Selecting previously unselected package r-bioc-graph. 248s Preparing to unpack .../196-r-bioc-graph_1.84.1-1_amd64.deb ... 248s Unpacking r-bioc-graph (1.84.1-1) ... 248s Selecting previously unselected package r-cran-bh. 248s Preparing to unpack .../197-r-cran-bh_1.84.0-1_all.deb ... 248s Unpacking r-cran-bh (1.84.0-1) ... 248s Selecting previously unselected package r-bioc-rbgl. 248s Preparing to unpack .../198-r-bioc-rbgl_1.82.0+dfsg-2_amd64.deb ... 248s Unpacking r-bioc-rbgl (1.82.0+dfsg-2) ... 248s Selecting previously unselected package r-cran-cluster. 248s 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251s Setting up r-cran-xml (3.99-0.18-1) ... 251s Setting up texlive-binaries (2024.20240313.70630+ds-6) ... 251s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 251s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 251s Setting up r-cran-cluster (2.1.8.1-1) ... 251s Setting up r-cran-sparsem (1.84-2-1) ... 251s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 251s Setting up r-cran-commonmark (1.9.2-2) ... 251s Setting up g++-14 (14.2.0-17ubuntu3) ... 251s Setting up r-cran-r6 (2.6.1-1) ... 251s Setting up r-cran-pkgkitten (0.2.4-1) ... 251s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 251s Setting up texlive-base (2024.20250114-1) ... 252s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 252s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 252s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 253s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 253s Setting up r-cran-magrittr (2.0.3-1) ... 253s Setting up r-cran-rappdirs (0.3.3-1) ... 253s Setting up r-cran-littler (0.3.20-2) ... 253s Setting up r-cran-bh (1.84.0-1) ... 253s Setting up r-cran-fs (1.6.5+dfsg-1) ... 253s Setting up r-cran-rcpp (1.0.14-1) ... 253s Setting up r-bioc-biocgenerics (0.52.0-2) ... 253s Setting up r-cran-rlang (1.1.5-1) ... 253s Setting up littler (0.3.20-2) ... 253s Setting up r-cran-xfun (0.51+dfsg-1) ... 253s Setting up r-cran-withr (3.0.2+dfsg-1) ... 253s Setting up r-cran-mime (0.12-2) ... 253s Setting up r-cran-base64enc (0.1-3-3) ... 253s Setting up r-cran-digest (0.6.37-1) ... 253s Setting up r-cran-yaml (2.3.10-1) ... 253s Setting up r-cran-evaluate (1.0.3-1) ... 253s Setting up r-cran-highr (0.11+dfsg-1) ... 253s Setting up r-cran-glue (1.8.0-1) ... 253s Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 253s Setting up r-cran-xtable (1:1.8-4-2) ... 253s Setting up r-cran-cli (3.6.4-1) ... 253s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 253s Setting up r-bioc-biocversion (3.20.0-2) ... 253s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 253s Setting up gcc (4:14.2.0-1ubuntu1) ... 253s Setting up r-cran-fastmap (1.2.0-1) ... 253s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 253s Setting up texlive-latex-base (2024.20250114-1) ... 253s Setting up r-cran-runit (0.4.33-1) ... 253s Setting up r-cran-later (1.4.1+dfsg-1) ... 253s Setting up r-cran-htmltools (0.5.8.1-1) ... 253s Setting up r-cran-tinytex (0.56-1) ... 253s Setting up r-cran-knitr (1.49+dfsg-1) ... 253s Setting up g++ (4:14.2.0-1ubuntu1) ... 253s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 253s Setting up r-cran-cachem (1.1.0-1) ... 253s Setting up r-cran-sass (0.4.9+dfsg-1) ... 253s Setting up build-essential (12.10ubuntu1) ... 253s Setting up r-bioc-graph (1.84.1-1) ... 253s Setting up r-bioc-rbgl (1.82.0+dfsg-2) ... 253s Setting up r-cran-fontawesome (0.5.3-1) ... 253s Setting up gfortran (4:14.2.0-1ubuntu1) ... 253s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 253s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 253s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 253s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 253s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 253s Setting up texlive-bibtex-extra (2024.20250114-1) ... 253s Setting up r-cran-memoise (2.0.1-1) ... 253s Setting up r-cran-promises (1.3.2+dfsg-1) ... 253s Setting up r-base-dev (4.4.3-1) ... 253s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 253s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 253s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 253s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 253s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 253s Setting up r-cran-bookdown (0.42+dfsg-1) ... 253s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 253s Processing triggers for libc-bin (2.41-1ubuntu2) ... 253s Processing triggers for man-db (2.13.0-1) ... 255s Processing triggers for install-info (7.1.1-1) ... 255s Processing triggers for tex-common (6.19) ... 256s Running updmap-sys. This may take some time... done. 256s Running mktexlsr /var/lib/texmf ... done. 256s Building format(s) --all. 284s This may take some time... done. 285s autopkgtest [22:03:40]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 285s autopkgtest [22:03:40]: test pkg-r-autopkgtest: [----------------------- 286s Test: Try to load the R library graph 286s 286s R version 4.4.3 (2025-02-28) -- "Trophy Case" 286s Copyright (C) 2025 The R Foundation for Statistical Computing 286s Platform: x86_64-pc-linux-gnu 286s 286s R is free software and comes with ABSOLUTELY NO WARRANTY. 286s You are welcome to redistribute it under certain conditions. 286s Type 'license()' or 'licence()' for distribution details. 286s 286s R is a collaborative project with many contributors. 286s Type 'contributors()' for more information and 286s 'citation()' on how to cite R or R packages in publications. 286s 286s Type 'demo()' for some demos, 'help()' for on-line help, or 286s 'help.start()' for an HTML browser interface to help. 286s Type 'q()' to quit R. 286s 286s > library('graph') 286s Loading required package: BiocGenerics 286s 286s Attaching package: ‘BiocGenerics’ 286s 286s The following objects are masked from ‘package:stats’: 286s 286s IQR, mad, sd, var, xtabs 286s 286s The following objects are masked from ‘package:base’: 286s 286s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 286s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 286s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 286s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 286s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 286s table, tapply, union, unique, unsplit, which.max, which.min 286s 286s > 286s > 286s Other tests are currently unsupported! 286s They will be progressively added. 286s autopkgtest [22:03:41]: test pkg-r-autopkgtest: -----------------------] 287s autopkgtest [22:03:42]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 287s pkg-r-autopkgtest PASS 287s autopkgtest [22:03:42]: @@@@@@@@@@@@@@@@@@@@ summary 287s pkg-r-autopkgtest PASS 293s nova [W] Skipping flock for amd64 293s Creating nova instance adt-plucky-amd64-r-bioc-graph-20250315-215855-juju-7f2275-prod-proposed-migration-environment-2-9efaa0c3-cd2d-4c27-84be-33eb068e5871 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 293s nova [W] Timed out waiting for bf37b22e-32aa-4985-8311-e6bb099ea771 to get deleted.