0s autopkgtest [21:58:38]: starting date and time: 2025-03-15 21:58:38+0000 0s autopkgtest [21:58:38]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [21:58:38]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rzb9jzb4/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-genomicranges --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-30.secgroup --name adt-plucky-amd64-r-bioc-genomicranges-20250315-215838-juju-7f2275-prod-proposed-migration-environment-20-f74068c6-98f3-4006-863f-7054c4ee97c3 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 46s autopkgtest [21:59:24]: testbed dpkg architecture: amd64 46s autopkgtest [21:59:24]: testbed apt version: 2.9.31ubuntu1 47s autopkgtest [21:59:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 47s autopkgtest [21:59:25]: testbed release detected to be: None 47s autopkgtest [21:59:25]: updating testbed package index (apt update) 48s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 48s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 48s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 48s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 48s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 48s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 48s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 48s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 48s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 48s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 48s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 48s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 48s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 49s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 49s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 49s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 49s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 49s Fetched 1265 kB in 1s (1554 kB/s) 50s Reading package lists... 50s Reading package lists... 50s Building dependency tree... 50s Reading state information... 51s Calculating upgrade... 51s Calculating upgrade... 51s The following package was automatically installed and is no longer required: 51s libnl-genl-3-200 51s Use 'sudo apt autoremove' to remove it. 51s The following NEW packages will be installed: 51s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 51s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 51s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 51s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 51s The following packages will be upgraded: 51s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 51s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 51s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 51s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 51s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 51s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 51s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 51s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 51s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 51s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 51s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 51s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 51s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 51s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 51s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 51s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 51s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 51s parted pci.ids pciutils pinentry-curses python-apt-common python3 51s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 51s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 51s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 51s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 51s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 51s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 51s xz-utils 51s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 51s Need to get 829 MB of archives. 51s After this operation, 325 MB of additional disk space will be used. 51s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 52s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 52s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 52s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 52s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 52s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 52s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 52s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 52s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 52s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 52s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 52s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 52s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 52s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 52s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 52s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 52s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 52s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 52s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 52s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 52s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 52s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 52s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 52s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 53s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 53s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 53s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 53s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 53s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 53s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 53s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 53s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 53s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 53s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 53s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 53s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 53s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 53s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 53s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 53s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 53s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 53s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 53s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 53s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 53s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 53s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 53s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 53s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 53s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 53s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 53s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 53s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 53s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 53s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 53s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 53s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 53s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 53s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 53s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 53s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 53s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 53s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 53s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 53s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 53s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 53s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 53s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 53s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 53s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 53s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 53s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 53s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 53s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 53s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 53s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 53s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 53s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 53s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 54s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 54s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 54s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 54s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 54s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 54s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 54s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 54s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 54s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 54s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 54s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 54s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 54s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 54s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 54s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 54s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 54s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 54s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 54s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 54s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 54s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 54s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 54s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 54s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 54s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 54s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 54s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 55s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 55s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 55s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 55s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 81s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 81s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 81s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 81s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 81s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 81s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 81s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 81s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 82s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 83s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 87s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 87s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 87s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 87s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 87s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 87s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 88s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 88s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 88s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 88s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 88s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 88s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 88s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 88s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 88s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 88s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 88s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 88s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 88s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 89s Preconfiguring packages ... 89s Fetched 829 MB in 37s (22.4 MB/s) 89s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 93s Preparing to unpack .../systemd_257.3-1ubuntu3_amd64.deb ... 93s Unpacking systemd (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 93s Preparing to unpack .../systemd-timesyncd_257.3-1ubuntu3_amd64.deb ... 93s Unpacking systemd-timesyncd (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 93s Preparing to unpack .../systemd-cryptsetup_257.3-1ubuntu3_amd64.deb ... 93s Unpacking systemd-cryptsetup (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 93s Preparing to unpack .../udev_257.3-1ubuntu3_amd64.deb ... 93s Unpacking udev (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 93s Preparing to unpack .../libudev1_257.3-1ubuntu3_amd64.deb ... 93s Unpacking libudev1:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 93s Setting up libudev1:amd64 (257.3-1ubuntu3) ... 93s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 94s Preparing to unpack .../libaudit1_1%3a4.0.2-2ubuntu2_amd64.deb ... 94s Unpacking libaudit1:amd64 (1:4.0.2-2ubuntu2) over (1:4.0.2-2ubuntu1) ... 94s Setting up libaudit1:amd64 (1:4.0.2-2ubuntu2) ... 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 94s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu6_amd64.deb ... 94s Unpacking libseccomp2:amd64 (2.5.5-1ubuntu6) over (2.5.5-1ubuntu5) ... 94s Setting up libseccomp2:amd64 (2.5.5-1ubuntu6) ... 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 94s Preparing to unpack .../libselinux1_3.7-3ubuntu3_amd64.deb ... 94s Unpacking libselinux1:amd64 (3.7-3ubuntu3) over (3.7-3ubuntu2) ... 94s Setting up libselinux1:amd64 (3.7-3ubuntu3) ... 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 94s Preparing to unpack .../libapparmor1_4.1.0~beta5-0ubuntu8_amd64.deb ... 94s Unpacking libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) over (4.1.0~beta5-0ubuntu5) ... 94s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 94s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 94s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 94s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 94s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 94s Setting up apt (2.9.33) ... 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 95s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 95s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 95s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 95s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 95s Setting up python3-minimal (3.13.2-2) ... 95s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 96s Preparing to unpack .../0-libsqlite3-0_3.46.1-2_amd64.deb ... 96s Unpacking libsqlite3-0:amd64 (3.46.1-2) over (3.46.1-1) ... 96s Preparing to unpack .../1-python3.13_3.13.2-2_amd64.deb ... 96s Unpacking python3.13 (3.13.2-2) over (3.13.2-1) ... 96s Preparing to unpack .../2-python3.13-minimal_3.13.2-2_amd64.deb ... 96s Unpacking python3.13-minimal (3.13.2-2) over (3.13.2-1) ... 96s Preparing to unpack .../3-libpython3.13-minimal_3.13.2-2_amd64.deb ... 96s Unpacking libpython3.13-minimal:amd64 (3.13.2-2) over (3.13.2-1) ... 96s Preparing to unpack .../4-libpython3.13-stdlib_3.13.2-2_amd64.deb ... 96s Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 96s Preparing to unpack .../5-libpython3-stdlib_3.13.2-2_amd64.deb ... 96s Unpacking libpython3-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 96s Preparing to unpack .../6-rsync_3.4.1+ds1-3_amd64.deb ... 96s Unpacking rsync (3.4.1+ds1-3) over (3.4.1-0syncable1) ... 96s Selecting previously unselected package libdebuginfod-common. 96s Preparing to unpack .../7-libdebuginfod-common_0.192-4_all.deb ... 96s Unpacking libdebuginfod-common (0.192-4) ... 96s Preparing to unpack .../8-libsemanage-common_3.7-2.1build1_all.deb ... 96s Unpacking libsemanage-common (3.7-2.1build1) over (3.7-2.1) ... 96s Setting up libsemanage-common (3.7-2.1build1) ... 97s (Reading database ... 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unpack .../36-binutils_2.44-3ubuntu1_amd64.deb ... 100s Unpacking binutils (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 100s Preparing to unpack .../37-binutils-common_2.44-3ubuntu1_amd64.deb ... 100s Unpacking binutils-common:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 100s Preparing to unpack .../38-libsframe1_2.44-3ubuntu1_amd64.deb ... 100s Unpacking libsframe1:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 100s Preparing to unpack .../39-hwdata_0.393-3_all.deb ... 100s Unpacking hwdata (0.393-3) over (0.392-1) ... 100s Selecting previously unselected package pnp.ids. 100s Preparing to unpack .../40-pnp.ids_0.393-3_all.deb ... 100s Unpacking pnp.ids (0.393-3) ... 100s Preparing to unpack .../41-linux-tools-common_6.14.0-10.10_all.deb ... 100s Unpacking linux-tools-common (6.14.0-10.10) over (6.12.0-16.16) ... 100s Selecting previously unselected package bpftool. 100s Preparing to unpack .../42-bpftool_7.6.0+6.14.0-10.10_amd64.deb ... 100s Unpacking bpftool (7.6.0+6.14.0-10.10) ... 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.../79-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ... 112s Unpacking python3-rpds-py (0.21.0-2ubuntu2) over (0.21.0-2ubuntu1) ... 112s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 112s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 112s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 112s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 112s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 112s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 112s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 112s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 112s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 112s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 112s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 112s Setting up media-types (13.0.0) ... 112s Installing new version of config file /etc/mime.types ... 112s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 112s Setting up ubuntu-kernel-accessories (1.549) ... 112s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 112s Setting up pci.ids (0.0~2025.03.09-1) ... 112s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 112s Setting up apt-utils (2.9.33) ... 112s Setting up libdebuginfod-common (0.192-4) ... 112s Setting up exfatprogs (1.2.8-1) ... 112s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 112s Setting up bpftool (7.6.0+6.14.0-10.10) ... 112s Setting up libestr0:amd64 (0.1.11-2) ... 112s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 112s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 112s Setting up dosfstools (4.2-1.2) ... 112s Setting up rsyslog (8.2412.0-2ubuntu2) ... 113s info: The user `syslog' is already a member of `adm'. 114s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 114s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 114s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 114s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 114s Setting up systemd (257.3-1ubuntu3) ... 114s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 114s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 114s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 115s Setting up libparted2t64:amd64 (3.6-5) ... 115s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 115s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 115s Setting up linux-headers-generic (6.14.0-10.10) ... 115s Setting up libjemalloc2:amd64 (5.3.0-3) ... 115s Setting up locales (2.41-1ubuntu1) ... 115s Installing new version of config file /etc/locale.alias ... 115s Generating locales (this might take a while)... 117s en_US.UTF-8... done 117s Generation complete. 117s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 117s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 117s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 117s Installing new version of config file /etc/apparmor.d/fusermount3 ... 117s Installing new version of config file /etc/apparmor.d/lsusb ... 117s Installing new version of config file /etc/apparmor.d/openvpn ... 118s Reloading AppArmor profiles 119s Setting up libftdi1-2:amd64 (1.5-8build1) ... 119s Setting up libglib2.0-data (2.84.0-1) ... 119s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 119s Setting up libncurses6:amd64 (6.5+20250216-2) ... 119s Setting up strace (6.13+ds-1ubuntu1) ... 119s Setting up xz-utils (5.6.4-1) ... 119s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 120s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 120s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 120s Setting up udev (257.3-1ubuntu3) ... 121s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 123s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 123s Setting up libpci3:amd64 (1:3.13.0-2) ... 123s Setting up whiptail (0.52.24-4ubuntu2) ... 123s Setting up python-apt-common (2.9.9build1) ... 123s Setting up pnp.ids (0.393-3) ... 123s Setting up libnl-3-200:amd64 (3.7.0-1) ... 123s Setting up python3.13-minimal (3.13.2-2) ... 123s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 123s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 123s Setting up libc-dev-bin (2.41-1ubuntu1) ... 123s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 123s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 123s Setting up rsync (3.4.1+ds1-3) ... 124s rsync.service is a disabled or a static unit not running, not starting it. 124s Setting up python3.13-gdbm (3.13.2-2) ... 124s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 124s Setting up systemd-resolved (257.3-1ubuntu3) ... 125s Setting up initramfs-tools-bin (0.146ubuntu1) ... 125s Setting up ncurses-term (6.5+20250216-2) ... 125s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 125s Setting up libpython3.13:amd64 (3.13.2-2) ... 125s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 125s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 125s Setting up systemd-sysv (257.3-1ubuntu3) ... 125s Setting up linux-headers-virtual (6.14.0-10.10) ... 125s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 125s Setting up python3.13 (3.13.2-2) ... 126s Setting up htop (3.4.0-2) ... 126s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 128s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 128s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 128s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 128s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 128s Setting up parted (3.6-5) ... 128s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 128s Setting up python3 (3.13.2-2) ... 128s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 128s Setting up python3-markupsafe (2.1.5-1build4) ... 128s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 130s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 130s Setting up hwdata (0.393-3) ... 130s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 130s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 130s No schema files found: doing nothing. 130s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 130s Setting up linux-perf (6.14.0-10.10) ... 130s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 130s Setting up pciutils (1:3.13.0-2) ... 131s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 131s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 131s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 131s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 131s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 131s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 131s Setting up curl (8.12.1-3ubuntu1) ... 131s Setting up linux-image-virtual (6.14.0-10.10) ... 131s Setting up initramfs-tools-core (0.146ubuntu1) ... 131s Setting up linux-tools-common (6.14.0-10.10) ... 131s Setting up python3-systemd (235-1build6) ... 131s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 131s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 131s Setting up linux-image-generic (6.14.0-10.10) ... 131s Setting up python3-dbus (1.3.2-5build5) ... 131s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 131s Setting up initramfs-tools (0.146ubuntu1) ... 131s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 131s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 131s update-initramfs: deferring update (trigger activated) 131s Setting up linux-generic (6.14.0-10.10) ... 131s Setting up ubuntu-minimal (1.549) ... 131s Setting up python3-apt (2.9.9build1) ... 131s Setting up python3-bcrypt (4.2.0-2.1build1) ... 131s Setting up python3-yaml (6.0.2-1build2) ... 131s Setting up libfwupd3:amd64 (2.0.6-4) ... 131s Setting up python3-lazr.uri (1.0.6-6) ... 131s Setting up binutils (2.44-3ubuntu1) ... 131s Setting up ubuntu-standard (1.549) ... 131s Setting up cloud-init-base (25.1-0ubuntu3) ... 133s Setting up linux-virtual (6.14.0-10.10) ... 133s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 133s Setting up python3-gi (3.50.0-4build1) ... 133s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 133s Setting up fwupd (2.0.6-4) ... 134s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 134s Setting up cloud-init (25.1-0ubuntu3) ... 134s Processing triggers for man-db (2.13.0-1) ... 136s Processing triggers for dbus (1.16.2-1ubuntu1) ... 136s Processing triggers for shared-mime-info (2.4-5) ... 136s Warning: program compiled against libxml 212 using older 209 136s Processing triggers for libc-bin (2.41-1ubuntu1) ... 136s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 136s /etc/kernel/postinst.d/initramfs-tools: 136s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 136s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 147s /etc/kernel/postinst.d/zz-update-grub: 147s Sourcing file `/etc/default/grub' 147s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 147s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 147s Generating grub configuration file ... 147s Found linux image: /boot/vmlinuz-6.14.0-10-generic 147s Found initrd image: /boot/initrd.img-6.14.0-10-generic 148s Found linux image: /boot/vmlinuz-6.12.0-16-generic 148s Found initrd image: /boot/initrd.img-6.12.0-16-generic 148s Found linux image: /boot/vmlinuz-6.11.0-8-generic 148s Found initrd image: /boot/initrd.img-6.11.0-8-generic 148s Warning: os-prober will not be executed to detect other bootable partitions. 148s Systems on them will not be added to the GRUB boot configuration. 148s Check GRUB_DISABLE_OS_PROBER documentation entry. 148s Adding boot menu entry for UEFI Firmware Settings ... 148s done 148s Processing triggers for initramfs-tools (0.146ubuntu1) ... 148s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 148s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 160s Reading package lists... 161s Building dependency tree... 161s Reading state information... 161s Solving dependencies... 161s The following packages will be REMOVED: 161s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 161s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 161s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 161s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 161s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 161s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 161s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 161s linux-tools-6.12.0-16-generic* 161s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 161s After this operation, 545 MB disk space will be freed. 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 161s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 161s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 161s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 161s Removing libpython3.12t64:amd64 (3.12.9-1) ... 161s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 162s Removing libnsl2:amd64 (1.3.0-3build3) ... 162s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 162s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 162s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 165s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 165s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 167s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 168s /etc/kernel/postrm.d/initramfs-tools: 168s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 168s /etc/kernel/postrm.d/zz-update-grub: 168s Sourcing file `/etc/default/grub' 168s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 168s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 168s Generating grub configuration file ... 168s Found linux image: /boot/vmlinuz-6.14.0-10-generic 168s Found initrd image: /boot/initrd.img-6.14.0-10-generic 168s Found linux image: /boot/vmlinuz-6.12.0-16-generic 168s Found initrd image: /boot/initrd.img-6.12.0-16-generic 168s Warning: os-prober will not be executed to detect other bootable partitions. 168s Systems on them will not be added to the GRUB boot configuration. 168s Check GRUB_DISABLE_OS_PROBER documentation entry. 168s Adding boot menu entry for UEFI Firmware Settings ... 168s done 169s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 169s W: Removing the running kernel 169s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 169s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 169s /etc/kernel/postrm.d/initramfs-tools: 169s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 169s /etc/kernel/postrm.d/zz-update-grub: 169s Sourcing file `/etc/default/grub' 169s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 169s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 169s Generating grub configuration file ... 169s Found linux image: /boot/vmlinuz-6.14.0-10-generic 169s Found initrd image: /boot/initrd.img-6.14.0-10-generic 169s Warning: os-prober will not be executed to detect other bootable partitions. 169s Systems on them will not be added to the GRUB boot configuration. 169s Check GRUB_DISABLE_OS_PROBER documentation entry. 169s Adding boot menu entry for UEFI Firmware Settings ... 169s done 169s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 170s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 171s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 171s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 171s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 171s Processing triggers for libc-bin (2.41-1ubuntu1) ... 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 172s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 172s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 172s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 172s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 172s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 172s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 172s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 172s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 172s autopkgtest [22:01:30]: upgrading testbed (apt dist-upgrade and autopurge) 172s Reading package lists... 172s Building dependency tree... 172s Reading state information... 173s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 173s Starting 2 pkgProblemResolver with broken count: 0 173s Done 174s Entering ResolveByKeep 174s 174s Calculating upgrade... 174s The following packages will be upgraded: 174s libc-bin libc-dev-bin libc6 libc6-dev locales 174s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 174s Need to get 10.5 MB of archives. 174s After this operation, 1024 B of additional disk space will be used. 174s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 175s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 175s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 175s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 175s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 175s Preconfiguring packages ... 176s Fetched 10.5 MB in 1s (9551 kB/s) 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 176s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 176s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 176s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 176s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 176s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 176s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 176s Setting up libc6:amd64 (2.41-1ubuntu2) ... 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 176s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 176s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 177s Setting up libc-bin (2.41-1ubuntu2) ... 177s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 177s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 177s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 177s Setting up locales (2.41-1ubuntu2) ... 178s Generating locales (this might take a while)... 179s en_US.UTF-8... done 179s Generation complete. 179s Setting up libc-dev-bin (2.41-1ubuntu2) ... 179s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 179s Processing triggers for man-db (2.13.0-1) ... 179s Processing triggers for systemd (257.3-1ubuntu3) ... 180s Reading package lists... 181s Building dependency tree... 181s Reading state information... 181s Starting pkgProblemResolver with broken count: 0 181s Starting 2 pkgProblemResolver with broken count: 0 181s Done 181s Solving dependencies... 181s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 182s autopkgtest [22:01:40]: rebooting testbed after setup commands that affected boot 204s autopkgtest [22:02:02]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 207s autopkgtest [22:02:05]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomicranges 209s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-genomicranges 1.58.0+dfsg-2 (dsc) [2345 B] 209s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-genomicranges 1.58.0+dfsg-2 (tar) [1058 kB] 209s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-genomicranges 1.58.0+dfsg-2 (diff) [6392 B] 209s gpgv: Signature made Sun Jan 12 14:11:09 2025 UTC 209s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 209s gpgv: issuer "crusoe@debian.org" 209s gpgv: Can't check signature: No public key 209s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicranges_1.58.0+dfsg-2.dsc: no acceptable signature found 209s autopkgtest [22:02:07]: testing package r-bioc-genomicranges version 1.58.0+dfsg-2 210s autopkgtest [22:02:08]: build not needed 212s autopkgtest [22:02:10]: test pkg-r-autopkgtest: preparing testbed 212s Reading package lists... 212s Building dependency tree... 212s Reading state information... 212s Starting pkgProblemResolver with broken count: 0 212s Starting 2 pkgProblemResolver with broken count: 0 212s Done 213s The following NEW packages will be installed: 213s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 213s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 213s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 213s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 213s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 213s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 213s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 213s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 213s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 213s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 213s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 213s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 213s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 213s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 213s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 213s libjs-popper.js libjs-prettify libjs-sifter.js 213s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 213s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 213s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 213s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 213s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 213s libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev 213s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 213s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 213s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 213s libxss1 libxt6t64 libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv 213s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 213s r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi 213s r-bioc-annotationfilter r-bioc-annotationhub r-bioc-biobase 213s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 213s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 213s r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray r-bioc-deseq2 213s r-bioc-dexseq r-bioc-edger r-bioc-ensembldb r-bioc-genefilter 213s r-bioc-geneplotter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 213s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 213s r-bioc-gviz r-bioc-iranges r-bioc-keggrest r-bioc-limma 213s r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools 213s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 213s r-bioc-summarizedexperiment r-bioc-txdbmaker r-bioc-ucsc.utils 213s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 213s r-cran-acepack r-cran-askpass r-cran-backports r-cran-base64enc r-cran-bh 213s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 213s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-chron 213s r-cran-cli r-cran-cluster r-cran-codetools r-cran-colorspace 213s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table 213s r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-dichromat r-cran-digest 213s r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap 213s r-cran-filelock r-cran-fontawesome r-cran-foreign r-cran-formatr 213s r-cran-formula r-cran-fs r-cran-futile.logger r-cran-futile.options 213s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable 213s r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable r-cran-htmltools 213s r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-httr2 r-cran-hwriter 213s r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 213s r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice 213s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 213s r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 213s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 213s r-cran-nnet r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten 213s r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises 213s r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 213s r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcurl r-cran-restfulr 213s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rsqlite 213s r-cran-rstudioapi r-cran-runit r-cran-sass r-cran-scales r-cran-shiny 213s r-cran-snow r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr 213s r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect 213s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite 213s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 213s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 213s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 213s 0 upgraded, 329 newly installed, 0 to remove and 0 not upgraded. 213s Need to get 507 MB of archives. 213s After this operation, 1472 MB of additional disk space will be used. 213s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 214s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 214s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 215s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 215s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 215s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 215s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 215s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 215s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 215s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 215s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 215s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 215s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 216s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 216s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 216s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 216s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 218s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 218s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 218s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 218s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 218s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 218s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 218s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 218s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 218s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 218s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 218s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 218s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 218s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 218s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 218s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 219s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 219s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 219s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 219s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 219s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 219s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 219s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 219s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 219s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 219s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 219s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 219s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 219s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 219s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 219s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 219s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 219s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 219s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB] 220s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 220s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 220s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 220s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 220s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 220s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 220s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 220s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 220s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 220s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 220s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 220s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 220s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 220s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 220s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 220s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 220s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 220s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 220s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 220s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 220s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 220s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 220s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 220s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 220s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 220s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 220s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 220s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 220s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 220s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 220s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 220s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 220s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 220s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 220s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 220s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB] 220s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 220s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 220s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 220s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 220s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 220s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 220s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 220s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 220s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 220s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 220s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 220s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 221s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 221s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 221s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 221s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 221s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 221s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 221s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 221s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 221s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 221s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB] 221s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 221s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 221s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 221s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB] 221s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 221s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 221s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB] 221s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 221s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 221s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 221s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 221s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 221s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 221s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 221s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 221s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 221s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 221s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 221s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 221s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 221s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 221s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 221s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 223s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 223s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 223s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 223s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 223s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 223s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 223s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 224s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 224s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 224s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 224s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 224s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 224s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 224s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 224s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 224s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 224s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 224s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 225s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 225s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB] 225s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 225s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 225s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 225s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 225s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 225s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 225s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 225s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 225s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 225s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 225s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 225s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 225s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 225s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 225s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 225s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 225s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 225s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 225s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 225s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 225s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 225s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 225s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 225s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 225s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 225s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 226s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 226s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 226s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 226s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 226s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 227s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 227s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 227s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB] 227s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 227s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 227s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationfilter all 1.30.0+dfsg-2 [247 kB] 227s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 227s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 227s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 227s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 227s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 227s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 227s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 227s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 227s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 227s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 227s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 227s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 227s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 227s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbplyr all 2.5.0+dfsg-1 [1233 kB] 227s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 227s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 228s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 228s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 228s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 228s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 228s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationhub all 3.14.0+dfsg-2 [447 kB] 228s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 228s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 228s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 228s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 228s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 228s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 228s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 228s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 228s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 228s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 228s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 228s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 228s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 228s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 229s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 229s Get:225 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 229s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 230s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 230s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 230s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 230s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 230s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 230s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 230s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 230s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 230s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 230s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 230s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 230s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 230s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 230s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 230s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 230s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 231s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 231s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 231s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB] 231s Get:246 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 231s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB] 231s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB] 232s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB] 232s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 236s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 236s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 236s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 236s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 236s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr2 all 1.1.1-1 [752 kB] 236s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml2 amd64 1.3.7-1 [334 kB] 236s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biomart all 2.62.1+dfsg-1 [444 kB] 236s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 236s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 236s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 236s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 236s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 236s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 236s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 236s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 236s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 236s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 236s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 236s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB] 236s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 236s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 236s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 237s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cluster amd64 2.1.8.1-1 [579 kB] 237s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 237s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 237s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nnet amd64 7.3-20-1 [116 kB] 237s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-foreign amd64 0.8.88-1 [250 kB] 237s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 237s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-data.table amd64 1.17.0+dfsg-1 [2168 kB] 237s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-backports amd64 1.5.0-2 [121 kB] 237s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-checkmate amd64 2.3.2-1 [706 kB] 237s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 237s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rstudioapi all 0.17.1-1 [299 kB] 237s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltable all 2.4.3-1 [388 kB] 237s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 237s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 237s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-chron amd64 2.3-62-1 [189 kB] 237s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB] 237s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 237s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 237s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 237s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 237s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-acepack amd64 1.6.1-1 [91.2 kB] 237s Get:294 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hmisc amd64 5.2-2-1 [3584 kB] 237s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 237s Get:296 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 237s Get:297 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 237s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 237s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 238s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1392 kB] 238s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 238s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 238s Get:303 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB] 238s Get:304 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 238s Get:305 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 239s Get:306 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 239s Get:307 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 239s Get:308 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 239s Get:309 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 239s Get:310 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB] 239s Get:311 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 239s Get:312 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-bsgenome all 1.74.0-2 [7001 kB] 239s Get:313 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-variantannotation amd64 1.52.0-2 [3642 kB] 239s Get:314 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-protgenerics all 1.38.0-2 [239 kB] 239s Get:315 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ensembldb all 2.30.0+dfsg-3 [1520 kB] 239s Get:316 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biovizbase amd64 1.54.0-2 [2857 kB] 240s Get:317 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-locfit amd64 1.5-9.12-1 [552 kB] 240s Get:318 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpparmadillo amd64 14.2.3-1-1 [864 kB] 240s Get:319 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-deseq2 amd64 1.46.0+dfsg-2 [1250 kB] 240s Get:320 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 240s Get:321 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 240s Get:322 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-geneplotter all 1.84.0+dfsg-2 [1508 kB] 240s Get:323 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genefilter amd64 1.88.0-2 [1243 kB] 240s Get:324 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-dexseq all 1.52.0+dfsg-2 [453 kB] 240s Get:325 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB] 240s Get:326 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-edger amd64 4.4.2+dfsg-1 [1120 kB] 240s Get:327 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-gviz all 1.50.0+dfsg-2 [4881 kB] 240s Get:328 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-txdbmaker all 1.2.1+ds-2 [875 kB] 240s Get:329 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 241s Preconfiguring packages ... 241s Fetched 507 MB in 27s (18.6 MB/s) 241s Selecting previously unselected package libisl23:amd64. 241s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 241s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 241s Unpacking libisl23:amd64 (0.27-1) ... 241s Selecting previously unselected package libmpc3:amd64. 241s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 241s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 241s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 241s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 241s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 241s Selecting previously unselected package cpp-14. 241s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 241s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 241s Selecting previously unselected package cpp-x86-64-linux-gnu. 241s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 241s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 241s Selecting previously unselected package cpp. 241s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 241s Unpacking cpp (4:14.2.0-1ubuntu1) ... 241s Selecting previously unselected package libcc1-0:amd64. 241s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 241s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 241s Selecting previously unselected package libgomp1:amd64. 241s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 241s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 241s Selecting previously unselected package libitm1:amd64. 241s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 241s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 241s Selecting previously unselected package libasan8:amd64. 241s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 241s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 242s Selecting previously unselected package liblsan0:amd64. 242s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 242s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 242s Selecting previously unselected package libtsan2:amd64. 242s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 242s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 242s Selecting previously unselected package libubsan1:amd64. 242s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 242s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 242s Selecting previously unselected package libhwasan0:amd64. 242s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 242s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 242s Selecting previously unselected package libquadmath0:amd64. 242s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 242s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 242s Selecting previously unselected package libgcc-14-dev:amd64. 242s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 242s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 242s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 242s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 242s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 242s Selecting previously unselected package gcc-14. 242s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 242s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 242s Selecting previously unselected package gcc-x86-64-linux-gnu. 242s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 242s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 242s Selecting previously unselected package gcc. 242s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 242s Unpacking gcc (4:14.2.0-1ubuntu1) ... 242s Selecting previously unselected package libstdc++-14-dev:amd64. 242s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 242s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 243s Selecting previously unselected package g++-14-x86-64-linux-gnu. 243s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 243s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 243s Selecting previously unselected package g++-14. 243s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ... 243s Unpacking g++-14 (14.2.0-17ubuntu3) ... 243s Selecting previously unselected package g++-x86-64-linux-gnu. 243s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 243s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 243s Selecting previously unselected package g++. 243s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 243s Unpacking g++ (4:14.2.0-1ubuntu1) ... 243s Selecting previously unselected package build-essential. 243s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 243s Unpacking build-essential (12.10ubuntu1) ... 243s Selecting previously unselected package dctrl-tools. 243s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 243s Unpacking dctrl-tools (2.24-3build3) ... 243s Selecting previously unselected package fonts-dejavu-mono. 243s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 243s Unpacking fonts-dejavu-mono (2.37-8) ... 243s Selecting previously unselected package fonts-dejavu-core. 243s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 243s Unpacking fonts-dejavu-core (2.37-8) ... 243s Selecting previously unselected package fontconfig-config. 243s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 243s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 243s Selecting previously unselected package libfontconfig1:amd64. 243s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 243s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 243s Selecting previously unselected package fontconfig. 243s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 243s Unpacking fontconfig (2.15.0-2ubuntu1) ... 243s Selecting previously unselected package fonts-font-awesome. 243s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 243s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 243s Selecting previously unselected package fonts-glyphicons-halflings. 243s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 243s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 243s Selecting previously unselected package fonts-lmodern. 243s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ... 243s Unpacking fonts-lmodern (2.005-1) ... 243s Selecting previously unselected package fonts-mathjax. 243s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 243s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 244s Selecting previously unselected package libgfortran5:amd64. 244s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 244s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 244s Selecting previously unselected package libgfortran-14-dev:amd64. 244s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 244s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 244s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 244s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 244s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 244s Selecting previously unselected package gfortran-14. 244s Preparing to unpack .../039-gfortran-14_14.2.0-17ubuntu3_amd64.deb ... 244s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 244s Selecting previously unselected package gfortran-x86-64-linux-gnu. 244s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 244s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 244s Selecting previously unselected package gfortran. 244s Preparing to unpack .../041-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 244s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 244s Selecting previously unselected package icu-devtools. 244s Preparing to unpack .../042-icu-devtools_76.1-1ubuntu2_amd64.deb ... 244s Unpacking icu-devtools (76.1-1ubuntu2) ... 244s Selecting previously unselected package javascript-common. 244s Preparing to unpack .../043-javascript-common_12_all.deb ... 244s Unpacking javascript-common (12) ... 244s Selecting previously unselected package libio-string-perl. 244s Preparing to unpack .../044-libio-string-perl_1.08-4_all.deb ... 244s Unpacking libio-string-perl (1.08-4) ... 244s Selecting previously unselected package liblatex-tounicode-perl. 244s Preparing to unpack .../045-liblatex-tounicode-perl_0.55-1_all.deb ... 244s Unpacking liblatex-tounicode-perl (0.55-1) ... 244s Selecting previously unselected package libbibtex-parser-perl. 244s Preparing to unpack .../046-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 244s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 244s Selecting previously unselected package libblas3:amd64. 244s Preparing to unpack .../047-libblas3_3.12.1-2_amd64.deb ... 244s Unpacking libblas3:amd64 (3.12.1-2) ... 244s Selecting previously unselected package libblas-dev:amd64. 244s Preparing to unpack .../048-libblas-dev_3.12.1-2_amd64.deb ... 244s Unpacking libblas-dev:amd64 (3.12.1-2) ... 244s Selecting previously unselected package libboost1.83-dev:amd64. 244s Preparing to unpack .../049-libboost1.83-dev_1.83.0-4.1ubuntu2_amd64.deb ... 244s Unpacking libboost1.83-dev:amd64 (1.83.0-4.1ubuntu2) ... 246s Selecting previously unselected package libboost-dev:amd64. 246s Preparing to unpack .../050-libboost-dev_1.83.0.2ubuntu1_amd64.deb ... 246s Unpacking libboost-dev:amd64 (1.83.0.2ubuntu1) ... 246s Selecting previously unselected package libbz2-dev:amd64. 246s Preparing to unpack .../051-libbz2-dev_1.0.8-6_amd64.deb ... 246s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 246s Selecting previously unselected package libpixman-1-0:amd64. 246s Preparing to unpack .../052-libpixman-1-0_0.44.0-3_amd64.deb ... 246s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 246s Selecting previously unselected package libxcb-render0:amd64. 246s Preparing to unpack .../053-libxcb-render0_1.17.0-2_amd64.deb ... 246s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 246s Selecting previously unselected package libxcb-shm0:amd64. 246s Preparing to unpack .../054-libxcb-shm0_1.17.0-2_amd64.deb ... 246s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 246s Selecting previously unselected package libxrender1:amd64. 246s Preparing to unpack .../055-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 246s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 246s Selecting previously unselected package libcairo2:amd64. 246s Preparing to unpack .../056-libcairo2_1.18.2-2_amd64.deb ... 246s Unpacking libcairo2:amd64 (1.18.2-2) ... 246s Selecting previously unselected package libdatrie1:amd64. 246s Preparing to unpack .../057-libdatrie1_0.2.13-3build1_amd64.deb ... 246s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 246s Selecting previously unselected package libdeflate0:amd64. 246s Preparing to unpack .../058-libdeflate0_1.23-1_amd64.deb ... 246s Unpacking libdeflate0:amd64 (1.23-1) ... 246s Selecting previously unselected package libdeflate-dev:amd64. 246s Preparing to unpack .../059-libdeflate-dev_1.23-1_amd64.deb ... 246s Unpacking libdeflate-dev:amd64 (1.23-1) ... 246s Selecting previously unselected package libgraphite2-3:amd64. 246s Preparing to unpack .../060-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 246s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 247s Selecting previously unselected package libharfbuzz0b:amd64. 247s Preparing to unpack .../061-libharfbuzz0b_10.2.0-1_amd64.deb ... 247s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 247s Selecting previously unselected package x11-common. 247s Preparing to unpack .../062-x11-common_1%3a7.7+23ubuntu3_all.deb ... 247s Unpacking x11-common (1:7.7+23ubuntu3) ... 247s Selecting previously unselected package libice6:amd64. 247s Preparing to unpack .../063-libice6_2%3a1.1.1-1_amd64.deb ... 247s Unpacking libice6:amd64 (2:1.1.1-1) ... 247s Selecting previously unselected package 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libpcre2-32-0:amd64 (10.45-1) ... 248s Selecting previously unselected package libpcre2-posix3:amd64. 248s Preparing to unpack .../101-libpcre2-posix3_10.45-1_amd64.deb ... 248s Unpacking libpcre2-posix3:amd64 (10.45-1) ... 248s Selecting previously unselected package libpcre2-dev:amd64. 248s Preparing to unpack .../102-libpcre2-dev_10.45-1_amd64.deb ... 248s Unpacking libpcre2-dev:amd64 (10.45-1) ... 249s Selecting previously unselected package libpkgconf3:amd64. 249s Preparing to unpack .../103-libpkgconf3_1.8.1-4_amd64.deb ... 249s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 249s Selecting previously unselected package zlib1g-dev:amd64. 249s Preparing to unpack .../104-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 249s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 249s Selecting previously unselected package libpng-dev:amd64. 249s Preparing to unpack .../105-libpng-dev_1.6.47-1_amd64.deb ... 249s Unpacking libpng-dev:amd64 (1.6.47-1) ... 249s Selecting previously unselected package libpotrace0:amd64. 249s Preparing to unpack .../106-libpotrace0_1.16-2build1_amd64.deb ... 249s Unpacking libpotrace0:amd64 (1.16-2build1) ... 249s Selecting previously unselected package libptexenc1:amd64. 249s Preparing to unpack .../107-libptexenc1_2024.20240313.70630+ds-6_amd64.deb ... 249s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-6) ... 249s Selecting previously unselected package libreadline-dev:amd64. 249s Preparing to unpack .../108-libreadline-dev_8.2-6_amd64.deb ... 249s Unpacking libreadline-dev:amd64 (8.2-6) ... 249s Selecting previously unselected package libsharpyuv0:amd64. 249s Preparing to unpack .../109-libsharpyuv0_1.5.0-0.1_amd64.deb ... 249s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 249s Selecting previously unselected package libsm6:amd64. 249s Preparing to unpack .../110-libsm6_2%3a1.2.4-1_amd64.deb ... 249s Unpacking libsm6:amd64 (2:1.2.4-1) ... 249s Selecting previously unselected package libsynctex2:amd64. 249s 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(1:1.2.1-1.2build1) ... 249s Selecting previously unselected package libxmu6:amd64. 249s Preparing to unpack .../122-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 249s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 249s Selecting previously unselected package libxpm4:amd64. 249s Preparing to unpack .../123-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 249s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 249s Selecting previously unselected package libxaw7:amd64. 249s Preparing to unpack .../124-libxaw7_2%3a1.0.16-1_amd64.deb ... 249s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 249s Selecting previously unselected package libxi6:amd64. 249s Preparing to unpack .../125-libxi6_2%3a1.8.2-1_amd64.deb ... 249s Unpacking libxi6:amd64 (2:1.8.2-1) ... 249s Selecting previously unselected package libzzip-0-13t64:amd64. 249s Preparing to unpack .../126-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 249s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 249s Selecting previously unselected package zip. 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250s Preparing to unpack .../133-node-bootstrap-sass_3.4.3-2_all.deb ... 250s Unpacking node-bootstrap-sass (3.4.3-2) ... 250s Selecting previously unselected package node-html5shiv. 250s Preparing to unpack .../134-node-html5shiv_3.7.3+dfsg-5_all.deb ... 250s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 250s Selecting previously unselected package node-normalize.css. 250s Preparing to unpack .../135-node-normalize.css_8.0.1-5_all.deb ... 250s Unpacking node-normalize.css (8.0.1-5) ... 250s Selecting previously unselected package pandoc-data. 250s Preparing to unpack .../136-pandoc-data_3.1.11.1-3build1_all.deb ... 250s Unpacking pandoc-data (3.1.11.1-3build1) ... 250s Selecting previously unselected package pandoc. 250s Preparing to unpack .../137-pandoc_3.1.11.1+ds-2_amd64.deb ... 250s Unpacking pandoc (3.1.11.1+ds-2) ... 251s Selecting previously unselected package liblzma-dev:amd64. 251s Preparing to unpack .../138-liblzma-dev_5.6.4-1_amd64.deb ... 251s Unpacking liblzma-dev:amd64 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previously unselected package r-cran-bit64. 251s Preparing to unpack .../150-r-cran-bit64_4.6.0-1-1ubuntu2_amd64.deb ... 251s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 251s Selecting previously unselected package r-cran-rlang. 251s Preparing to unpack .../151-r-cran-rlang_1.1.5-1_amd64.deb ... 251s Unpacking r-cran-rlang (1.1.5-1) ... 251s Selecting previously unselected package r-cran-cli. 251s Preparing to unpack .../152-r-cran-cli_3.6.4-1_amd64.deb ... 251s Unpacking r-cran-cli (3.6.4-1) ... 252s Selecting previously unselected package r-cran-glue. 252s Preparing to unpack .../153-r-cran-glue_1.8.0-1_amd64.deb ... 252s Unpacking r-cran-glue (1.8.0-1) ... 252s Selecting previously unselected package r-cran-lifecycle. 252s Preparing to unpack .../154-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 252s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 252s Selecting previously unselected package r-cran-vctrs. 252s Preparing to unpack .../155-r-cran-vctrs_0.6.5-1_amd64.deb ... 252s Unpacking r-cran-vctrs (0.6.5-1) ... 252s Selecting previously unselected package r-cran-blob. 252s Preparing to unpack .../156-r-cran-blob_1.2.4-1_all.deb ... 252s Unpacking r-cran-blob (1.2.4-1) ... 252s Selecting previously unselected package r-cran-fastmap. 252s Preparing to unpack .../157-r-cran-fastmap_1.2.0-1_amd64.deb ... 252s Unpacking r-cran-fastmap (1.2.0-1) ... 252s Selecting previously unselected package r-cran-cachem. 252s Preparing to unpack .../158-r-cran-cachem_1.1.0-1_amd64.deb ... 252s Unpacking r-cran-cachem (1.1.0-1) ... 252s Selecting previously unselected package r-cran-memoise. 252s Preparing to unpack .../159-r-cran-memoise_2.0.1-1_all.deb ... 252s Unpacking r-cran-memoise (2.0.1-1) ... 252s Selecting previously unselected package r-cran-pkgconfig. 252s Preparing to unpack .../160-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 252s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 252s Selecting previously unselected package r-cran-plogr. 252s Preparing to unpack .../161-r-cran-plogr_0.2.0-3build1_all.deb ... 252s Unpacking r-cran-plogr (0.2.0-3build1) ... 252s Selecting previously unselected package r-cran-cpp11. 252s Preparing to unpack .../162-r-cran-cpp11_0.5.2-1_all.deb ... 252s Unpacking r-cran-cpp11 (0.5.2-1) ... 252s Selecting previously unselected package r-cran-rsqlite. 252s Preparing to unpack .../163-r-cran-rsqlite_2.3.9-1_amd64.deb ... 252s Unpacking r-cran-rsqlite (2.3.9-1) ... 252s Selecting previously unselected package r-cran-curl. 252s Preparing to unpack .../164-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 252s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 252s Selecting previously unselected package r-cran-jsonlite. 252s Preparing to unpack .../165-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 252s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 252s Selecting previously unselected package r-cran-mime. 252s Preparing to unpack .../166-r-cran-mime_0.12-2_amd64.deb ... 252s Unpacking r-cran-mime (0.12-2) ... 252s Selecting previously unselected package r-cran-sys. 252s Preparing to unpack .../167-r-cran-sys_3.4.3-1_amd64.deb ... 252s Unpacking r-cran-sys (3.4.3-1) ... 252s Selecting previously unselected package r-cran-askpass. 252s Preparing to unpack .../168-r-cran-askpass_1.2.1-1_amd64.deb ... 252s Unpacking r-cran-askpass (1.2.1-1) ... 252s Selecting previously unselected package r-cran-openssl. 252s Preparing to unpack .../169-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 252s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 252s Selecting previously unselected package r-cran-r6. 252s Preparing to unpack .../170-r-cran-r6_2.6.1-1_all.deb ... 252s Unpacking r-cran-r6 (2.6.1-1) ... 252s Selecting previously unselected package r-cran-httr. 252s Preparing to unpack .../171-r-cran-httr_1.4.7+dfsg-1_all.deb ... 252s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 252s Selecting previously unselected package r-cran-png. 252s Preparing to unpack .../172-r-cran-png_0.1-8-1build2_amd64.deb ... 252s Unpacking r-cran-png (0.1-8-1build2) ... 252s Selecting previously unselected package r-bioc-zlibbioc. 252s Preparing to unpack .../173-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 252s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 252s Selecting previously unselected package r-bioc-xvector. 252s Preparing to unpack .../174-r-bioc-xvector_0.46.0-2_amd64.deb ... 252s Unpacking r-bioc-xvector (0.46.0-2) ... 252s Selecting previously unselected package r-bioc-ucsc.utils. 252s Preparing to unpack .../175-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 252s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 253s Selecting previously unselected package r-bioc-genomeinfodbdata. 253s Preparing to unpack .../176-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 253s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 253s Selecting previously unselected package r-bioc-genomeinfodb. 253s Preparing to unpack .../177-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 253s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 253s Selecting previously unselected package r-cran-crayon. 253s Preparing to unpack .../178-r-cran-crayon_1.5.3-1_all.deb ... 253s Unpacking r-cran-crayon (1.5.3-1) ... 253s Selecting previously unselected package r-bioc-biostrings. 253s Preparing to unpack .../179-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 253s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 253s Selecting previously unselected package r-bioc-keggrest. 253s Preparing to unpack .../180-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 253s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 253s Selecting previously unselected package r-bioc-annotationdbi. 253s Preparing to unpack .../181-r-bioc-annotationdbi_1.68.0-2_all.deb ... 253s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 253s Selecting previously unselected package r-cran-xml. 253s Preparing to unpack .../182-r-cran-xml_3.99-0.18-1_amd64.deb ... 253s Unpacking r-cran-xml (3.99-0.18-1) ... 253s Selecting previously unselected package r-cran-xtable. 253s Preparing to unpack .../183-r-cran-xtable_1%3a1.8-4-2_all.deb ... 253s Unpacking r-cran-xtable (1:1.8-4-2) ... 253s Selecting previously unselected package r-bioc-annotate. 253s Preparing to unpack .../184-r-bioc-annotate_1.84.0+dfsg-2_all.deb ... 253s Unpacking r-bioc-annotate (1.84.0+dfsg-2) ... 253s Selecting previously unselected package r-bioc-genomicranges. 253s Preparing to unpack .../185-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 253s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 253s Selecting previously unselected package r-cran-lazyeval. 253s Preparing to unpack .../186-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 253s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 253s Selecting previously unselected package r-bioc-annotationfilter. 253s Preparing to unpack .../187-r-bioc-annotationfilter_1.30.0+dfsg-2_all.deb ... 253s Unpacking r-bioc-annotationfilter (1.30.0+dfsg-2) ... 253s Selecting previously unselected package r-cran-generics. 253s Preparing to unpack .../188-r-cran-generics_0.1.3-1_all.deb ... 253s Unpacking r-cran-generics (0.1.3-1) ... 253s Selecting previously unselected package r-cran-magrittr. 253s Preparing to unpack .../189-r-cran-magrittr_2.0.3-1_amd64.deb ... 253s Unpacking r-cran-magrittr (2.0.3-1) ... 253s Selecting previously unselected package r-cran-utf8. 253s Preparing to unpack .../190-r-cran-utf8_1.2.4-1_amd64.deb ... 253s Unpacking r-cran-utf8 (1.2.4-1) ... 253s Selecting previously unselected package r-cran-pillar. 253s Preparing to unpack .../191-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 253s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 253s Selecting previously unselected package r-cran-fansi. 253s Preparing to unpack .../192-r-cran-fansi_1.0.5-1_amd64.deb ... 253s Unpacking r-cran-fansi (1.0.5-1) ... 254s Selecting previously unselected package r-cran-tibble. 254s Preparing to unpack .../193-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 254s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 254s Selecting previously unselected package r-cran-withr. 254s Preparing to unpack .../194-r-cran-withr_3.0.2+dfsg-1_all.deb ... 254s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 254s Selecting previously unselected package r-cran-tidyselect. 254s Preparing to unpack .../195-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 254s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 254s Selecting previously unselected package r-cran-dplyr. 254s Preparing to unpack .../196-r-cran-dplyr_1.1.4-4_amd64.deb ... 254s Unpacking r-cran-dplyr (1.1.4-4) ... 254s Selecting previously unselected package r-cran-purrr. 254s Preparing to unpack .../197-r-cran-purrr_1.0.4-1_amd64.deb ... 254s Unpacking r-cran-purrr (1.0.4-1) ... 254s Selecting previously unselected package r-cran-stringi. 254s Preparing to unpack .../198-r-cran-stringi_1.8.4-1build1_amd64.deb ... 254s Unpacking r-cran-stringi (1.8.4-1build1) ... 254s Selecting previously unselected package r-cran-stringr. 254s Preparing to unpack .../199-r-cran-stringr_1.5.1-1_all.deb ... 254s Unpacking r-cran-stringr (1.5.1-1) ... 254s Selecting previously unselected package r-cran-tidyr. 254s Preparing to unpack .../200-r-cran-tidyr_1.3.1-1_amd64.deb ... 254s Unpacking r-cran-tidyr (1.3.1-1) ... 254s Selecting previously unselected package r-cran-dbplyr. 254s Preparing to unpack .../201-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ... 254s Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ... 254s Selecting previously unselected package r-cran-filelock. 254s Preparing to unpack .../202-r-cran-filelock_1.0.3-1_amd64.deb ... 254s Unpacking r-cran-filelock (1.0.3-1) ... 254s Selecting previously unselected package r-bioc-biocfilecache. 254s Preparing to unpack .../203-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 254s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 254s Selecting previously unselected package r-cran-biocmanager. 254s Preparing to unpack .../204-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 254s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 254s Selecting previously unselected package r-bioc-biocversion. 254s Preparing to unpack .../205-r-bioc-biocversion_3.20.0-2_all.deb ... 254s Unpacking r-bioc-biocversion (3.20.0-2) ... 254s Selecting previously unselected package r-cran-rappdirs. 254s Preparing to unpack .../206-r-cran-rappdirs_0.3.3-1_amd64.deb ... 254s Unpacking r-cran-rappdirs (0.3.3-1) ... 254s Selecting previously unselected package r-cran-yaml. 254s Preparing to unpack .../207-r-cran-yaml_2.3.10-1_amd64.deb ... 254s Unpacking r-cran-yaml (2.3.10-1) ... 254s Selecting previously unselected package r-bioc-annotationhub. 254s Preparing to unpack .../208-r-bioc-annotationhub_3.14.0+dfsg-2_all.deb ... 254s Unpacking r-bioc-annotationhub (3.14.0+dfsg-2) ... 254s Selecting previously unselected package r-bioc-biocio. 254s Preparing to unpack .../209-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 254s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 254s Selecting previously unselected package r-cran-formatr. 254s Preparing to unpack .../210-r-cran-formatr_1.14-2_all.deb ... 254s Unpacking r-cran-formatr (1.14-2) ... 254s Selecting previously unselected package r-cran-lambda.r. 254s Preparing to unpack .../211-r-cran-lambda.r_1.2.4-2build1_all.deb ... 254s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 254s Selecting previously unselected package r-cran-futile.options. 254s Preparing to unpack .../212-r-cran-futile.options_1.0.1-3build1_all.deb ... 254s Unpacking r-cran-futile.options (1.0.1-3build1) ... 254s Selecting previously unselected package r-cran-futile.logger. 254s Preparing to unpack .../213-r-cran-futile.logger_1.4.3-4build1_all.deb ... 254s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 254s Selecting previously unselected package r-cran-snow. 254s Preparing to unpack .../214-r-cran-snow_1%3a0.4.4-2_all.deb ... 254s Unpacking r-cran-snow (1:0.4.4-2) ... 254s Selecting previously unselected package r-cran-codetools. 254s Preparing to unpack .../215-r-cran-codetools_0.2-20-1_all.deb ... 254s Unpacking r-cran-codetools (0.2-20-1) ... 254s Selecting previously unselected package r-cran-bh. 254s Preparing to unpack .../216-r-cran-bh_1.84.0-1_all.deb ... 254s Unpacking r-cran-bh (1.84.0-1) ... 254s Selecting previously unselected package r-bioc-biocparallel. 254s Preparing to unpack .../217-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 254s Unpacking r-bioc-biocparallel (1.40.0-2) ... 254s Selecting previously unselected package r-cran-base64enc. 255s Preparing to unpack .../218-r-cran-base64enc_0.1-3-3_amd64.deb ... 255s Unpacking r-cran-base64enc (0.1-3-3) ... 255s Selecting previously unselected package r-cran-digest. 255s Preparing to unpack .../219-r-cran-digest_0.6.37-1_amd64.deb ... 255s Unpacking r-cran-digest (0.6.37-1) ... 255s Selecting previously unselected package r-cran-htmltools. 255s Preparing to unpack .../220-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 255s Unpacking r-cran-htmltools (0.5.8.1-1) ... 255s Selecting previously unselected package r-cran-evaluate. 255s Preparing to unpack .../221-r-cran-evaluate_1.0.3-1_all.deb ... 255s Unpacking r-cran-evaluate (1.0.3-1) ... 255s Selecting previously unselected package r-cran-xfun. 255s Preparing to unpack .../222-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 255s Unpacking r-cran-xfun (0.51+dfsg-1) ... 255s Selecting previously unselected package r-cran-highr. 255s Preparing to unpack .../223-r-cran-highr_0.11+dfsg-1_all.deb ... 255s Unpacking r-cran-highr (0.11+dfsg-1) ... 255s Selecting previously unselected package libjs-mathjax. 255s Preparing to unpack .../224-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 255s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 255s Selecting previously unselected package r-cran-knitr. 255s Preparing to unpack .../225-r-cran-knitr_1.49+dfsg-1_all.deb ... 255s Unpacking r-cran-knitr (1.49+dfsg-1) ... 256s Selecting previously unselected package r-cran-jquerylib. 256s Preparing to unpack .../226-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 256s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 256s Selecting previously unselected package r-cran-fs. 256s Preparing to unpack .../227-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 256s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 256s Selecting previously unselected package r-cran-sass. 256s Preparing to unpack .../228-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 256s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 256s Selecting previously unselected package r-cran-bslib. 256s Preparing to unpack .../229-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 256s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 256s Selecting previously unselected package r-cran-fontawesome. 256s Preparing to unpack .../230-r-cran-fontawesome_0.5.3-1_all.deb ... 256s Unpacking r-cran-fontawesome (0.5.3-1) ... 256s Selecting previously unselected package r-cran-tinytex. 256s Preparing to unpack .../231-r-cran-tinytex_0.56-1_all.deb ... 256s Unpacking r-cran-tinytex (0.56-1) ... 256s Selecting previously unselected package libjs-modernizr. 256s Preparing to unpack .../232-libjs-modernizr_3.13.0-0.1_all.deb ... 256s Unpacking libjs-modernizr (3.13.0-0.1) ... 256s Selecting previously unselected package r-cran-pkgkitten. 256s Preparing to unpack .../233-r-cran-pkgkitten_0.2.4-1_all.deb ... 256s Unpacking r-cran-pkgkitten (0.2.4-1) ... 256s Selecting previously unselected package r-cran-rcpp. 256s Preparing to unpack .../234-r-cran-rcpp_1.0.14-1_amd64.deb ... 256s Unpacking r-cran-rcpp (1.0.14-1) ... 256s Selecting previously unselected package r-cran-later. 256s Preparing to unpack .../235-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 256s Unpacking r-cran-later (1.4.1+dfsg-1) ... 256s Selecting previously unselected package r-cran-promises. 256s Preparing to unpack .../236-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 256s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 256s Selecting previously unselected package r-cran-httpuv. 256s Preparing to unpack .../237-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 256s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 256s Selecting previously unselected package r-cran-sourcetools. 256s Preparing to unpack .../238-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 256s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 256s Selecting previously unselected package r-cran-commonmark. 256s Preparing to unpack .../239-r-cran-commonmark_1.9.2-2_amd64.deb ... 256s Unpacking r-cran-commonmark (1.9.2-2) ... 256s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 256s Preparing to unpack .../240-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 256s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 256s Selecting previously unselected package r-cran-shiny. 256s Preparing to unpack .../241-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 256s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 257s Selecting previously unselected package r-cran-rmarkdown. 257s Preparing to unpack .../242-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 257s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 257s Selecting previously unselected package r-cran-bookdown. 257s Preparing to unpack .../243-r-cran-bookdown_0.42+dfsg-1_all.deb ... 257s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 257s Selecting previously unselected package tex-common. 257s Preparing to unpack .../244-tex-common_6.19_all.deb ... 257s Unpacking tex-common (6.19) ... 257s Selecting previously unselected package t1utils. 257s Preparing to unpack .../245-t1utils_1.41-4build3_amd64.deb ... 257s Unpacking t1utils (1.41-4build3) ... 257s Selecting previously unselected package texlive-binaries. 257s Preparing to unpack .../246-texlive-binaries_2024.20240313.70630+ds-6_amd64.deb ... 257s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ... 257s Selecting previously unselected package texlive-base. 257s Preparing to unpack .../247-texlive-base_2024.20250114-1_all.deb ... 257s Unpacking texlive-base (2024.20250114-1) ... 258s Selecting previously unselected package texlive-latex-base. 258s Preparing to unpack .../248-texlive-latex-base_2024.20250114-1_all.deb ... 258s Unpacking texlive-latex-base (2024.20250114-1) ... 258s Selecting previously unselected package texlive-bibtex-extra. 258s Preparing to unpack .../249-texlive-bibtex-extra_2024.20250114-1_all.deb ... 258s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 260s Selecting previously unselected package r-bioc-biocstyle. 260s Preparing to unpack .../250-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 260s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 260s Selecting previously unselected package r-cran-hms. 260s Preparing to unpack .../251-r-cran-hms_1.1.3-1_all.deb ... 260s Unpacking r-cran-hms (1.1.3-1) ... 260s Selecting previously unselected package r-cran-prettyunits. 260s Preparing to unpack .../252-r-cran-prettyunits_1.2.0-1_all.deb ... 260s Unpacking r-cran-prettyunits (1.2.0-1) ... 260s Selecting previously unselected package r-cran-progress. 260s Preparing to unpack .../253-r-cran-progress_1.2.3-1_all.deb ... 260s Unpacking r-cran-progress (1.2.3-1) ... 260s Selecting previously unselected package r-cran-httr2. 260s Preparing to unpack .../254-r-cran-httr2_1.1.1-1_all.deb ... 260s Unpacking r-cran-httr2 (1.1.1-1) ... 261s Selecting previously unselected package r-cran-xml2. 261s Preparing to unpack .../255-r-cran-xml2_1.3.7-1_amd64.deb ... 261s Unpacking r-cran-xml2 (1.3.7-1) ... 261s Selecting previously unselected package r-bioc-biomart. 261s Preparing to unpack .../256-r-bioc-biomart_2.62.1+dfsg-1_all.deb ... 261s Unpacking r-bioc-biomart (2.62.1+dfsg-1) ... 261s Selecting previously unselected package r-cran-farver. 261s Preparing to unpack .../257-r-cran-farver_2.1.2-1_amd64.deb ... 261s Unpacking r-cran-farver (2.1.2-1) ... 261s Selecting previously unselected package r-cran-labeling. 261s Preparing to unpack .../258-r-cran-labeling_0.4.3-1_all.deb ... 261s Unpacking r-cran-labeling (0.4.3-1) ... 261s Selecting previously unselected package r-cran-colorspace. 261s Preparing to unpack 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(0.3.6+dfsg-1) ... 261s Selecting previously unselected package r-cran-isoband. 261s Preparing to unpack .../265-r-cran-isoband_0.2.7-1_amd64.deb ... 261s Unpacking r-cran-isoband (0.2.7-1) ... 261s Selecting previously unselected package r-cran-mass. 261s Preparing to unpack .../266-r-cran-mass_7.3-64-1_amd64.deb ... 261s Unpacking r-cran-mass (7.3-64-1) ... 261s Selecting previously unselected package r-cran-lattice. 261s Preparing to unpack .../267-r-cran-lattice_0.22-6-1_amd64.deb ... 261s Unpacking r-cran-lattice (0.22-6-1) ... 261s Selecting previously unselected package r-cran-nlme. 261s Preparing to unpack .../268-r-cran-nlme_3.1.167-1_amd64.deb ... 261s Unpacking r-cran-nlme (3.1.167-1) ... 261s Selecting previously unselected package r-cran-matrix. 261s Preparing to unpack .../269-r-cran-matrix_1.7-3-1_amd64.deb ... 261s Unpacking r-cran-matrix (1.7-3-1) ... 261s Selecting previously unselected package r-cran-mgcv. 261s Preparing to unpack .../270-r-cran-mgcv_1.9-1-1_amd64.deb ... 261s Unpacking r-cran-mgcv (1.9-1-1) ... 261s Selecting previously unselected package r-cran-ggplot2. 261s Preparing to unpack .../271-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 261s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 261s Selecting previously unselected package r-cran-cluster. 261s Preparing to unpack .../272-r-cran-cluster_2.1.8.1-1_amd64.deb ... 261s Unpacking r-cran-cluster (2.1.8.1-1) ... 261s Selecting previously unselected package r-cran-survival. 262s Preparing to unpack .../273-r-cran-survival_3.8-3-1_amd64.deb ... 262s Unpacking r-cran-survival (3.8-3-1) ... 262s Selecting previously unselected package r-cran-rpart. 262s Preparing to unpack .../274-r-cran-rpart_4.1.24-1_amd64.deb ... 262s Unpacking r-cran-rpart (4.1.24-1) ... 262s Selecting previously unselected package r-cran-nnet. 262s Preparing to unpack .../275-r-cran-nnet_7.3-20-1_amd64.deb ... 262s Unpacking r-cran-nnet (7.3-20-1) ... 262s Selecting previously unselected package r-cran-foreign. 262s Preparing to unpack .../276-r-cran-foreign_0.8.88-1_amd64.deb ... 262s Unpacking r-cran-foreign (0.8.88-1) ... 262s Selecting previously unselected package r-cran-gridextra. 262s Preparing to unpack .../277-r-cran-gridextra_2.3-3build1_all.deb ... 262s Unpacking r-cran-gridextra (2.3-3build1) ... 262s Selecting previously unselected package r-cran-data.table. 262s Preparing to unpack .../278-r-cran-data.table_1.17.0+dfsg-1_amd64.deb ... 262s Unpacking r-cran-data.table (1.17.0+dfsg-1) ... 262s Selecting previously unselected package r-cran-backports. 262s Preparing to unpack .../279-r-cran-backports_1.5.0-2_amd64.deb ... 262s Unpacking r-cran-backports (1.5.0-2) ... 262s Selecting previously unselected package r-cran-checkmate. 262s Preparing to unpack .../280-r-cran-checkmate_2.3.2-1_amd64.deb ... 262s Unpacking r-cran-checkmate (2.3.2-1) ... 262s Selecting previously unselected package r-cran-htmlwidgets. 262s Preparing to unpack .../281-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 262s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 262s Selecting previously unselected package r-cran-rstudioapi. 262s Preparing to unpack .../282-r-cran-rstudioapi_0.17.1-1_all.deb ... 262s Unpacking r-cran-rstudioapi (0.17.1-1) ... 262s Selecting previously unselected package r-cran-htmltable. 262s Preparing to unpack .../283-r-cran-htmltable_2.4.3-1_all.deb ... 262s Unpacking r-cran-htmltable (2.4.3-1) ... 262s Selecting previously unselected package r-cran-viridis. 262s Preparing to unpack .../284-r-cran-viridis_0.6.5-1_all.deb ... 262s Unpacking r-cran-viridis (0.6.5-1) ... 262s Selecting previously unselected package r-cran-formula. 262s Preparing to unpack .../285-r-cran-formula_1.2-5-1_all.deb ... 262s Unpacking r-cran-formula (1.2-5-1) ... 262s Selecting previously unselected package r-cran-chron. 262s Preparing to unpack .../286-r-cran-chron_2.3-62-1_amd64.deb ... 262s Unpacking r-cran-chron (2.3-62-1) ... 262s Selecting previously unselected package r-cran-jpeg. 262s Preparing to unpack .../287-r-cran-jpeg_0.1-10-1_amd64.deb ... 262s Unpacking r-cran-jpeg (0.1-10-1) ... 262s Selecting previously unselected package r-cran-deldir. 262s Preparing to unpack .../288-r-cran-deldir_2.0-4-1build1_amd64.deb ... 262s Unpacking r-cran-deldir (2.0-4-1build1) ... 262s Selecting previously unselected package r-cran-rcppeigen. 262s Preparing to unpack .../289-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 262s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 262s Selecting previously unselected package r-cran-interp. 262s Preparing to unpack .../290-r-cran-interp_1.1-6-1_amd64.deb ... 262s Unpacking r-cran-interp (1.1-6-1) ... 262s Selecting previously unselected package r-cran-latticeextra. 262s Preparing to unpack .../291-r-cran-latticeextra_0.6-30-1_all.deb ... 262s Unpacking r-cran-latticeextra (0.6-30-1) ... 263s Selecting previously unselected package r-cran-acepack. 263s Preparing to unpack .../292-r-cran-acepack_1.6.1-1_amd64.deb ... 263s Unpacking r-cran-acepack (1.6.1-1) ... 263s Selecting previously unselected package r-cran-hmisc. 263s Preparing to unpack .../293-r-cran-hmisc_5.2-2-1_amd64.deb ... 263s Unpacking r-cran-hmisc (5.2-2-1) ... 263s Selecting previously unselected package r-cran-dichromat. 263s Preparing to unpack .../294-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 263s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 263s Selecting previously unselected package r-cran-matrixstats. 263s Preparing to unpack .../295-r-cran-matrixstats_1.5.0-1_amd64.deb ... 263s Unpacking r-cran-matrixstats (1.5.0-1) ... 263s Selecting previously unselected package r-bioc-matrixgenerics. 263s Preparing to unpack .../296-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 263s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 263s Selecting previously unselected package r-cran-abind. 263s Preparing to unpack .../297-r-cran-abind_1.4-8-1_all.deb ... 263s Unpacking r-cran-abind (1.4-8-1) ... 263s Selecting previously unselected package r-bioc-s4arrays. 263s Preparing to unpack .../298-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 263s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 263s Selecting previously unselected package r-bioc-sparsearray. 263s Preparing to unpack .../299-r-bioc-sparsearray_1.6.2+dfsg-1_amd64.deb ... 263s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 263s Selecting previously unselected package r-bioc-delayedarray. 263s Preparing to unpack .../300-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 263s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 263s Selecting previously unselected package r-bioc-summarizedexperiment. 263s Preparing to unpack .../301-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 263s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 263s Selecting previously unselected package r-cran-bitops. 263s Preparing to unpack .../302-r-cran-bitops_1.0-9-1_amd64.deb ... 263s Unpacking r-cran-bitops (1.0-9-1) ... 263s Selecting previously unselected package r-bioc-rhtslib. 263s Preparing to unpack .../303-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ... 263s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 263s Selecting previously unselected package r-bioc-rsamtools. 263s Preparing to unpack .../304-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ... 263s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 263s Selecting previously unselected package r-bioc-genomicalignments. 263s Preparing to unpack .../305-r-bioc-genomicalignments_1.42.0-2_amd64.deb ... 263s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 263s Selecting previously unselected package r-cran-rcurl. 263s Preparing to unpack .../306-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 263s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 263s Selecting previously unselected package r-cran-rjson. 263s Preparing to unpack .../307-r-cran-rjson_0.2.23-1_amd64.deb ... 263s Unpacking r-cran-rjson (0.2.23-1) ... 263s Selecting previously unselected package r-cran-restfulr. 263s 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Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 270s Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ... 270s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 270s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 270s Setting up r-bioc-annotationfilter (1.30.0+dfsg-2) ... 270s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 270s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 270s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 270s Setting up r-cran-bookdown (0.42+dfsg-1) ... 270s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 270s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 270s Setting up r-bioc-deseq2 (1.46.0+dfsg-2) ... 270s Setting up r-bioc-annotationdbi (1.68.0-2) ... 270s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 270s Setting up r-bioc-annotationhub (3.14.0+dfsg-2) ... 270s Setting up r-bioc-annotate (1.84.0+dfsg-2) ... 270s Setting up r-bioc-biomart (2.62.1+dfsg-1) ... 270s Setting up r-bioc-genefilter (1.88.0-2) ... 270s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 270s Setting up r-bioc-genomicalignments (1.42.0-2) ... 270s Setting up r-bioc-geneplotter (1.84.0+dfsg-2) ... 270s Setting up r-bioc-rtracklayer (1.66.0-2) ... 270s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 270s Setting up r-cran-htmltable (2.4.3-1) ... 270s Setting up r-bioc-dexseq (1.52.0+dfsg-2) ... 270s Setting up r-bioc-bsgenome (1.74.0-2) ... 270s Setting up r-bioc-txdbmaker (1.2.1+ds-2) ... 270s Setting up r-bioc-ensembldb (2.30.0+dfsg-3) ... 270s Setting up r-cran-hmisc (5.2-2-1) ... 270s Setting up r-bioc-variantannotation (1.52.0-2) ... 270s Setting up r-bioc-biovizbase (1.54.0-2) ... 270s Setting up r-bioc-gviz (1.50.0+dfsg-2) ... 270s Processing triggers for libc-bin (2.41-1ubuntu2) ... 270s Processing triggers for man-db (2.13.0-1) ... 272s Processing triggers for install-info (7.1.1-1) ... 272s Processing triggers for tex-common (6.19) ... 273s Running updmap-sys. This may take some time... done. 273s Running mktexlsr /var/lib/texmf ... done. 273s Building format(s) --all. 300s This may take some time... done. 301s autopkgtest [22:03:39]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 301s autopkgtest [22:03:39]: test pkg-r-autopkgtest: [----------------------- 301s Test: Try to load the R library GenomicRanges 301s 301s R version 4.4.3 (2025-02-28) -- "Trophy Case" 301s Copyright (C) 2025 The R Foundation for Statistical Computing 301s Platform: x86_64-pc-linux-gnu 301s 301s R is free software and comes with ABSOLUTELY NO WARRANTY. 301s You are welcome to redistribute it under certain conditions. 301s Type 'license()' or 'licence()' for distribution details. 301s 301s R is a collaborative project with many contributors. 301s Type 'contributors()' for more information and 301s 'citation()' on how to cite R or R packages in publications. 301s 301s Type 'demo()' for some demos, 'help()' for on-line help, or 301s 'help.start()' for an HTML browser interface to help. 301s Type 'q()' to quit R. 301s 301s > library('GenomicRanges') 301s Loading required package: stats4 302s Loading required package: BiocGenerics 302s 302s Attaching package: ‘BiocGenerics’ 302s 302s The following objects are masked from ‘package:stats’: 302s 302s IQR, mad, sd, var, xtabs 302s 302s The following objects are masked from ‘package:base’: 302s 302s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 302s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 302s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 302s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 302s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 302s table, tapply, union, unique, unsplit, which.max, which.min 302s 302s Loading required package: S4Vectors 302s 302s Attaching package: ‘S4Vectors’ 302s 302s The following object is masked from ‘package:utils’: 302s 302s findMatches 302s 302s The following objects are masked from ‘package:base’: 302s 302s expand.grid, I, unname 302s 302s Loading required package: IRanges 303s Loading required package: GenomeInfoDb 303s > 303s > 303s Other tests are currently unsupported! 303s They will be progressively added. 304s autopkgtest [22:03:42]: test pkg-r-autopkgtest: -----------------------] 304s pkg-r-autopkgtest PASS 304s autopkgtest [22:03:42]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 305s autopkgtest [22:03:43]: @@@@@@@@@@@@@@@@@@@@ summary 305s pkg-r-autopkgtest PASS 322s nova [W] Skipping flock for amd64 322s Creating nova instance adt-plucky-amd64-r-bioc-genomicranges-20250315-215838-juju-7f2275-prod-proposed-migration-environment-20-f74068c6-98f3-4006-863f-7054c4ee97c3 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 322s nova [W] Timed out waiting for 9767748b-7f71-4f3e-b525-2162db431154 to get deleted.