0s autopkgtest [21:58:37]: starting date and time: 2025-03-15 21:58:37+0000 0s autopkgtest [21:58:37]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [21:58:37]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.9lorkr1g/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-genomicalignments --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-9.secgroup --name adt-plucky-amd64-r-bioc-genomicalignments-20250315-215836-juju-7f2275-prod-proposed-migration-environment-2-3666f58b-100f-4030-b290-e7421d6243ca --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 48s autopkgtest [21:59:25]: testbed dpkg architecture: amd64 48s autopkgtest [21:59:25]: testbed apt version: 2.9.31ubuntu1 48s autopkgtest [21:59:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 48s autopkgtest [21:59:25]: testbed release detected to be: None 49s autopkgtest [21:59:26]: updating testbed package index (apt update) 50s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 50s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 50s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 50s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 50s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 50s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 50s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 50s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 50s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 50s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 50s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 50s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 50s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 50s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 50s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 50s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 50s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 51s Fetched 1265 kB in 1s (1482 kB/s) 52s Reading package lists... 52s Reading package lists... 52s Building dependency tree... 52s Reading state information... 53s Calculating upgrade... 53s Calculating upgrade... 53s The following package was automatically installed and is no longer required: 53s libnl-genl-3-200 53s Use 'sudo apt autoremove' to remove it. 53s The following NEW packages will be installed: 53s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 53s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 53s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 53s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 53s The following packages will be upgraded: 53s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 53s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 53s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 53s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 53s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 53s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 53s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 53s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 53s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 53s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 53s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 53s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 53s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 53s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 53s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 53s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 53s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 53s parted pci.ids pciutils pinentry-curses python-apt-common python3 53s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 53s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 53s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 53s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 53s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 53s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 53s xz-utils 53s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 53s Need to get 829 MB of archives. 53s After this operation, 325 MB of additional disk space will be used. 53s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 54s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 54s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 54s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 54s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 54s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 54s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 54s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 54s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 54s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 54s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 54s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 54s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 54s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 54s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 54s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 54s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 54s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 54s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 54s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 54s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 55s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 55s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 55s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 55s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 55s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 55s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 55s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 55s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 55s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 55s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 55s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 55s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 55s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 55s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 55s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 55s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 55s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 55s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 55s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 55s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 55s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 55s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 55s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 55s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 55s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 55s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 55s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 55s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 55s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 55s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 55s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 55s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 55s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 55s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 55s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 55s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 55s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 55s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 55s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 55s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 55s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 55s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 55s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 55s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 55s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 55s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 55s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 55s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 55s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 55s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 55s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 55s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 55s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 55s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 56s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 56s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 56s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 56s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 56s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 56s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 56s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 56s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 56s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 56s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 56s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 56s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 56s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 56s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 56s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 56s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 56s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 56s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 56s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 56s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 56s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 56s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 56s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 56s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 56s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 56s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 56s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 56s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 56s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 57s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 58s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 58s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 58s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 58s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 79s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 79s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 79s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 79s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 79s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 79s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 79s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 79s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 80s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 81s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 84s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 84s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 84s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 84s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 84s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 84s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 85s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 85s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 85s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 85s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 85s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 85s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 85s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 85s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 85s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 85s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 85s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 85s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 85s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 86s Preconfiguring packages ... 86s Fetched 829 MB in 32s (26.1 MB/s) 86s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 90s Preparing to unpack .../libaudit1_1%3a4.0.2-2ubuntu2_amd64.deb ... 90s Unpacking libaudit1:amd64 (1:4.0.2-2ubuntu2) over (1:4.0.2-2ubuntu1) ... 90s Setting up libaudit1:amd64 (1:4.0.2-2ubuntu2) ... 90s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 92s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 92s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 92s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 92s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 92s Setting up python3-minimal (3.13.2-2) ... 92s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 92s Preparing to unpack .../0-libsqlite3-0_3.46.1-2_amd64.deb ... 92s Unpacking libsqlite3-0:amd64 (3.46.1-2) over (3.46.1-1) ... 92s Preparing to unpack .../1-python3.13_3.13.2-2_amd64.deb ... 92s Unpacking python3.13 (3.13.2-2) over (3.13.2-1) ... 93s Preparing to unpack .../2-python3.13-minimal_3.13.2-2_amd64.deb ... 93s Unpacking python3.13-minimal (3.13.2-2) over (3.13.2-1) ... 93s Preparing to unpack .../3-libpython3.13-minimal_3.13.2-2_amd64.deb ... 93s Unpacking libpython3.13-minimal:amd64 (3.13.2-2) over (3.13.2-1) ... 93s Preparing to unpack .../4-libpython3.13-stdlib_3.13.2-2_amd64.deb ... 93s Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 93s Preparing to unpack .../5-libpython3-stdlib_3.13.2-2_amd64.deb ... 93s Unpacking libpython3-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 93s Preparing to unpack .../6-rsync_3.4.1+ds1-3_amd64.deb ... 93s Unpacking rsync (3.4.1+ds1-3) over (3.4.1-0syncable1) ... 93s Selecting previously unselected package libdebuginfod-common. 93s Preparing to unpack .../7-libdebuginfod-common_0.192-4_all.deb ... 93s Unpacking libdebuginfod-common (0.192-4) ... 93s Preparing to unpack .../8-libsemanage-common_3.7-2.1build1_all.deb ... 93s Unpacking libsemanage-common (3.7-2.1build1) over (3.7-2.1) ... 93s Setting up libsemanage-common (3.7-2.1build1) ... 93s (Reading database ... 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over (0.21.0-2ubuntu1) ... 107s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 107s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 107s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 107s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 107s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 107s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 107s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 107s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 107s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 107s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 108s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 108s Setting up media-types (13.0.0) ... 108s Installing new version of config file /etc/mime.types ... 108s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 108s Setting up ubuntu-kernel-accessories (1.549) ... 108s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 108s Setting up pci.ids (0.0~2025.03.09-1) ... 108s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 108s Setting up apt-utils (2.9.33) ... 108s Setting up libdebuginfod-common (0.192-4) ... 108s Setting up exfatprogs (1.2.8-1) ... 108s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 108s Setting up bpftool (7.6.0+6.14.0-10.10) ... 108s Setting up libestr0:amd64 (0.1.11-2) ... 108s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 108s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 108s Setting up dosfstools (4.2-1.2) ... 108s Setting up rsyslog (8.2412.0-2ubuntu2) ... 108s info: The user `syslog' is already a member of `adm'. 109s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 109s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 109s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 109s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 109s Setting up systemd (257.3-1ubuntu3) ... 109s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 109s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 109s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 110s Setting up libparted2t64:amd64 (3.6-5) ... 110s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 110s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 110s Setting up linux-headers-generic (6.14.0-10.10) ... 110s Setting up libjemalloc2:amd64 (5.3.0-3) ... 110s Setting up locales (2.41-1ubuntu1) ... 110s Installing new version of config file /etc/locale.alias ... 110s Generating locales (this might take a while)... 112s en_US.UTF-8... done 112s Generation complete. 112s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 112s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 112s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 112s Installing new version of config file /etc/apparmor.d/fusermount3 ... 112s Installing new version of config file /etc/apparmor.d/lsusb ... 112s Installing new version of config file /etc/apparmor.d/openvpn ... 113s Reloading AppArmor profiles 114s Setting up libftdi1-2:amd64 (1.5-8build1) ... 114s Setting up libglib2.0-data (2.84.0-1) ... 114s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 114s Setting up libncurses6:amd64 (6.5+20250216-2) ... 114s Setting up strace (6.13+ds-1ubuntu1) ... 114s Setting up xz-utils (5.6.4-1) ... 114s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 115s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 115s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 115s Setting up udev (257.3-1ubuntu3) ... 115s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 117s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 117s Setting up libpci3:amd64 (1:3.13.0-2) ... 117s Setting up whiptail (0.52.24-4ubuntu2) ... 117s Setting up python-apt-common (2.9.9build1) ... 117s Setting up pnp.ids (0.393-3) ... 117s Setting up libnl-3-200:amd64 (3.7.0-1) ... 117s Setting up python3.13-minimal (3.13.2-2) ... 118s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 118s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 118s Setting up libc-dev-bin (2.41-1ubuntu1) ... 118s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 118s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 118s Setting up rsync (3.4.1+ds1-3) ... 118s rsync.service is a disabled or a static unit not running, not starting it. 118s Setting up python3.13-gdbm (3.13.2-2) ... 118s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 118s Setting up systemd-resolved (257.3-1ubuntu3) ... 119s Setting up initramfs-tools-bin (0.146ubuntu1) ... 119s Setting up ncurses-term (6.5+20250216-2) ... 119s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 119s Setting up libpython3.13:amd64 (3.13.2-2) ... 119s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 119s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 119s Setting up systemd-sysv (257.3-1ubuntu3) ... 119s Setting up linux-headers-virtual (6.14.0-10.10) ... 119s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 119s Setting up python3.13 (3.13.2-2) ... 120s Setting up htop (3.4.0-2) ... 120s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 122s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 122s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 122s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 122s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 122s Setting up parted (3.6-5) ... 122s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 122s Setting up python3 (3.13.2-2) ... 122s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 122s Setting up python3-markupsafe (2.1.5-1build4) ... 122s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 124s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 124s Setting up hwdata (0.393-3) ... 124s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 124s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 124s No schema files found: doing nothing. 124s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 124s Setting up linux-perf (6.14.0-10.10) ... 124s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 124s Setting up pciutils (1:3.13.0-2) ... 124s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 125s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 125s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 125s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 125s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 125s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 125s Setting up curl (8.12.1-3ubuntu1) ... 125s Setting up linux-image-virtual (6.14.0-10.10) ... 125s Setting up initramfs-tools-core (0.146ubuntu1) ... 125s Setting up linux-tools-common (6.14.0-10.10) ... 125s Setting up python3-systemd (235-1build6) ... 125s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 125s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 125s Setting up linux-image-generic (6.14.0-10.10) ... 125s Setting up python3-dbus (1.3.2-5build5) ... 125s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 125s Setting up initramfs-tools (0.146ubuntu1) ... 125s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 125s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 125s update-initramfs: deferring update (trigger activated) 125s Setting up linux-generic (6.14.0-10.10) ... 125s Setting up ubuntu-minimal (1.549) ... 125s Setting up python3-apt (2.9.9build1) ... 125s Setting up python3-bcrypt (4.2.0-2.1build1) ... 125s Setting up python3-yaml (6.0.2-1build2) ... 125s Setting up libfwupd3:amd64 (2.0.6-4) ... 125s Setting up python3-lazr.uri (1.0.6-6) ... 126s Setting up binutils (2.44-3ubuntu1) ... 126s Setting up ubuntu-standard (1.549) ... 126s Setting up cloud-init-base (25.1-0ubuntu3) ... 127s Setting up linux-virtual (6.14.0-10.10) ... 127s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 127s Setting up python3-gi (3.50.0-4build1) ... 127s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 127s Setting up fwupd (2.0.6-4) ... 128s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 128s fwupd.service is a disabled or a static unit not running, not starting it. 128s Setting up cloud-init (25.1-0ubuntu3) ... 128s Processing triggers for man-db (2.13.0-1) ... 130s Processing triggers for dbus (1.16.2-1ubuntu1) ... 130s Processing triggers for shared-mime-info (2.4-5) ... 130s Warning: program compiled against libxml 212 using older 209 130s Processing triggers for libc-bin (2.41-1ubuntu1) ... 130s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 130s /etc/kernel/postinst.d/initramfs-tools: 130s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 130s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 140s /etc/kernel/postinst.d/zz-update-grub: 140s Sourcing file `/etc/default/grub' 140s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 140s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 140s Generating grub configuration file ... 141s Found linux image: /boot/vmlinuz-6.14.0-10-generic 141s Found initrd image: /boot/initrd.img-6.14.0-10-generic 141s Found linux image: /boot/vmlinuz-6.12.0-16-generic 141s Found initrd image: /boot/initrd.img-6.12.0-16-generic 141s Found linux image: /boot/vmlinuz-6.11.0-8-generic 141s Found initrd image: /boot/initrd.img-6.11.0-8-generic 141s Warning: os-prober will not be executed to detect other bootable partitions. 141s Systems on them will not be added to the GRUB boot configuration. 141s Check GRUB_DISABLE_OS_PROBER documentation entry. 141s Adding boot menu entry for UEFI Firmware Settings ... 141s done 141s Processing triggers for initramfs-tools (0.146ubuntu1) ... 141s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 141s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 153s Reading package lists... 153s Building dependency tree... 153s Reading state information... 153s Solving dependencies... 154s The following packages will be REMOVED: 154s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 154s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 154s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 154s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 154s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 154s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 154s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 154s linux-tools-6.12.0-16-generic* 154s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 154s After this operation, 545 MB disk space will be freed. 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 154s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 154s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 154s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 154s Removing libpython3.12t64:amd64 (3.12.9-1) ... 154s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 154s Removing libnsl2:amd64 (1.3.0-3build3) ... 154s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 154s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 155s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 157s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 157s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 160s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 160s /etc/kernel/postrm.d/initramfs-tools: 160s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 160s /etc/kernel/postrm.d/zz-update-grub: 160s Sourcing file `/etc/default/grub' 160s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 160s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 160s Generating grub configuration file ... 160s Found linux image: /boot/vmlinuz-6.14.0-10-generic 160s Found initrd image: /boot/initrd.img-6.14.0-10-generic 160s Found linux image: /boot/vmlinuz-6.12.0-16-generic 160s Found initrd image: /boot/initrd.img-6.12.0-16-generic 161s Warning: os-prober will not be executed to detect other bootable partitions. 161s Systems on them will not be added to the GRUB boot configuration. 161s Check GRUB_DISABLE_OS_PROBER documentation entry. 161s Adding boot menu entry for UEFI Firmware Settings ... 161s done 161s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 161s W: Removing the running kernel 161s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 161s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 161s /etc/kernel/postrm.d/initramfs-tools: 161s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 161s /etc/kernel/postrm.d/zz-update-grub: 161s Sourcing file `/etc/default/grub' 161s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 161s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 161s Generating grub configuration file ... 161s Found linux image: /boot/vmlinuz-6.14.0-10-generic 161s Found initrd image: /boot/initrd.img-6.14.0-10-generic 161s Warning: os-prober will not be executed to detect other bootable partitions. 161s Systems on them will not be added to the GRUB boot configuration. 161s Check GRUB_DISABLE_OS_PROBER documentation entry. 161s Adding boot menu entry for UEFI Firmware Settings ... 161s done 161s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 162s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 163s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 163s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 163s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 164s Processing triggers for libc-bin (2.41-1ubuntu1) ... 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 164s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 164s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 164s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 164s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 164s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 164s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 164s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 164s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 164s autopkgtest [22:01:21]: upgrading testbed (apt dist-upgrade and autopurge) 164s Reading package lists... 164s Building dependency tree... 164s Reading state information... 165s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 165s Starting 2 pkgProblemResolver with broken count: 0 165s Done 165s Entering ResolveByKeep 166s 166s Calculating upgrade... 166s The following packages will be upgraded: 166s libc-bin libc-dev-bin libc6 libc6-dev locales 166s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 166s Need to get 10.5 MB of archives. 166s After this operation, 1024 B of additional disk space will be used. 166s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 167s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 167s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 167s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 167s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 168s Preconfiguring packages ... 168s Fetched 10.5 MB in 2s (4949 kB/s) 168s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 168s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 168s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 169s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 169s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 169s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 169s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 169s Setting up libc6:amd64 (2.41-1ubuntu2) ... 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 169s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 169s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 169s Setting up libc-bin (2.41-1ubuntu2) ... 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 169s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 169s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 170s Setting up locales (2.41-1ubuntu2) ... 170s Generating locales (this might take a while)... 172s en_US.UTF-8... done 172s Generation complete. 172s Setting up libc-dev-bin (2.41-1ubuntu2) ... 172s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 172s Processing triggers for man-db (2.13.0-1) ... 172s Processing triggers for systemd (257.3-1ubuntu3) ... 173s Reading package lists... 173s Building dependency tree... 173s Reading state information... 174s Starting pkgProblemResolver with broken count: 0 174s Starting 2 pkgProblemResolver with broken count: 0 174s Done 174s Solving dependencies... 174s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 174s autopkgtest [22:01:31]: rebooting testbed after setup commands that affected boot 198s autopkgtest [22:01:55]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 200s autopkgtest [22:01:57]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomicalignments 203s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-genomicalignments 1.42.0-2 (dsc) [2451 B] 203s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-genomicalignments 1.42.0-2 (tar) [2273 kB] 203s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-genomicalignments 1.42.0-2 (diff) [7800 B] 203s gpgv: Signature made Mon Jan 13 08:01:02 2025 UTC 203s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 203s gpgv: issuer "crusoe@debian.org" 203s gpgv: Can't check signature: No public key 203s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicalignments_1.42.0-2.dsc: no acceptable signature found 203s autopkgtest [22:02:00]: testing package r-bioc-genomicalignments version 1.42.0-2 204s autopkgtest [22:02:01]: build not needed 206s autopkgtest [22:02:03]: test pkg-r-autopkgtest: preparing testbed 206s Reading package lists... 206s Building dependency tree... 206s Reading state information... 207s Starting pkgProblemResolver with broken count: 0 207s Starting 2 pkgProblemResolver with broken count: 0 207s Done 207s The following NEW packages will be installed: 207s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 207s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 207s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 207s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 207s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 207s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 207s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 207s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 207s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 207s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 207s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 207s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 207s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 207s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 207s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 207s libjs-popper.js libjs-prettify libjs-sifter.js 207s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 207s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 207s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 207s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 207s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 207s libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev 207s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 207s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 207s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 207s libxss1 libxt6t64 libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv 207s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 207s r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase 207s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 207s r-bioc-biocversion r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray 207s r-bioc-deseq2 r-bioc-edger r-bioc-genomeinfodb r-bioc-genomeinfodbdata 207s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 207s r-bioc-iranges r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics 207s r-bioc-pwalign r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 207s r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 207s r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 207s r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager 207s r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown 207s r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools r-cran-colorspace 207s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 207s r-cran-deldir r-cran-digest r-cran-evaluate r-cran-fansi r-cran-farver 207s r-cran-fastmap r-cran-fontawesome r-cran-formatr r-cran-fs 207s r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue 207s r-cran-gtable r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 207s r-cran-hwriter r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jquerylib 207s r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 207s r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler 207s r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 207s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 207s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 207s r-cran-png r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer 207s r-cran-rcpp r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcurl 207s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 207s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 207s r-cran-sourcetools r-cran-statmod r-cran-sys r-cran-tibble r-cran-tinytex 207s r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun 207s r-cran-xml r-cran-xtable r-cran-yaml t1utils tex-common texlive-base 207s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 207s xdg-utils zip zlib1g-dev 207s 0 upgraded, 284 newly installed, 0 to remove and 0 not upgraded. 207s Need to get 463 MB of archives. 207s After this operation, 1404 MB of additional disk space will be used. 207s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 208s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 208s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 211s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 211s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 211s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 211s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 211s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 211s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 211s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 212s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 212s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 212s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 212s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 212s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 212s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 213s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 215s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 215s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 215s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 215s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 216s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 217s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 217s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 217s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 217s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 217s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 217s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 217s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 217s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 217s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 217s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 217s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 217s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 217s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 218s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 218s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 218s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 218s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 219s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 219s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 219s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 219s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 219s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 219s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 219s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 219s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 219s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 219s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 219s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB] 219s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 219s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 219s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 219s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 219s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 219s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 219s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 219s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 219s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 219s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 219s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 219s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 220s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 220s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 220s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 220s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 220s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 220s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 220s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 220s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 220s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 220s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 220s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 220s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 220s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 220s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 220s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 220s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 220s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 220s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 220s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 220s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 220s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 220s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 220s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 220s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB] 220s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 220s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 220s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 220s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 220s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 220s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 220s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 220s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 220s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 220s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 220s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 220s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 220s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 220s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 220s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 221s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 221s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 221s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 221s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 221s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 221s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 221s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB] 221s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 221s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 221s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 221s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB] 221s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 221s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 221s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB] 221s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 221s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 221s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 221s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 221s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 221s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 221s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 221s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 221s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 221s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 221s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 221s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 221s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 221s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 221s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 221s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 222s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 222s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 222s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 222s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 222s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 222s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 222s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 224s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 224s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 224s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 224s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 224s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 224s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 224s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 224s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 224s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 224s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 224s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 224s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 224s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB] 224s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 224s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 224s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 224s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 224s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 224s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 224s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 224s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 224s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 224s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 224s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 224s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 224s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 224s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 224s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 224s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 224s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 224s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 224s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 224s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 224s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 224s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 224s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 225s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 225s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 225s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 225s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 225s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 225s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 226s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 226s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 226s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 226s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 226s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 226s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 226s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 226s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 226s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 226s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 226s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 226s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 226s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 226s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 226s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 226s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 226s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 226s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 226s Get:199 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 227s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 227s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 227s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 227s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 227s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 227s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 227s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 228s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 228s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 228s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 228s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 228s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 228s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 228s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 228s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 228s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 228s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 228s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 228s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 228s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 228s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 228s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 228s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 228s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 228s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB] 228s Get:225 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 228s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB] 228s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB] 229s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB] 229s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 231s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 231s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 231s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 232s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 232s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB] 232s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 232s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 232s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 232s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 232s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 232s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 232s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 232s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 232s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1392 kB] 232s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 232s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 232s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 232s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 232s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 232s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 232s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB] 232s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-bsgenome all 1.74.0-2 [7001 kB] 233s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-locfit amd64 1.5-9.12-1 [552 kB] 233s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 233s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 233s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 233s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB] 233s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 233s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 233s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 233s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 233s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 233s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 233s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 233s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 233s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 233s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 233s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 233s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 233s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 234s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpparmadillo amd64 14.2.3-1-1 [864 kB] 234s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-deseq2 amd64 1.46.0+dfsg-2 [1250 kB] 234s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 234s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB] 234s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-edger amd64 4.4.2+dfsg-1 [1120 kB] 234s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 234s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-pwalign amd64 1.2.0-2 [757 kB] 234s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 234s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB] 234s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 234s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 234s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 234s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 234s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-shortread amd64 1.64.0-3 [5247 kB] 234s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 235s Preconfiguring packages ... 235s Fetched 463 MB in 27s (17.1 MB/s) 235s Selecting previously unselected package libisl23:amd64. 235s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 235s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 235s Unpacking libisl23:amd64 (0.27-1) ... 235s Selecting previously unselected package libmpc3:amd64. 235s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 235s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 235s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 235s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 235s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 236s Selecting previously unselected package cpp-14. 236s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 236s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 236s Selecting previously unselected package cpp-x86-64-linux-gnu. 236s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 236s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 236s Selecting previously unselected package cpp. 236s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 236s Unpacking cpp (4:14.2.0-1ubuntu1) ... 236s Selecting previously unselected package libcc1-0:amd64. 236s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 236s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 236s Selecting previously unselected package libgomp1:amd64. 236s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 236s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 236s Selecting previously unselected package libitm1:amd64. 236s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 236s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 236s Selecting previously unselected package libasan8:amd64. 236s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 236s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 236s Selecting previously unselected package liblsan0:amd64. 236s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 236s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 236s Selecting previously unselected package libtsan2:amd64. 236s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 236s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 236s Selecting previously unselected package libubsan1:amd64. 236s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 236s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 236s Selecting previously unselected package libhwasan0:amd64. 236s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 236s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 236s Selecting previously unselected package libquadmath0:amd64. 236s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 236s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 236s Selecting previously unselected package libgcc-14-dev:amd64. 236s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 236s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 236s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 236s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 236s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 237s Selecting previously unselected package gcc-14. 237s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 237s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 237s Selecting previously unselected package gcc-x86-64-linux-gnu. 237s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 237s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 237s Selecting previously unselected package gcc. 237s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 237s Unpacking gcc (4:14.2.0-1ubuntu1) ... 237s Selecting previously unselected package libstdc++-14-dev:amd64. 237s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 237s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 237s Selecting previously unselected package g++-14-x86-64-linux-gnu. 237s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 237s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 237s Selecting previously unselected package g++-14. 237s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ... 237s Unpacking g++-14 (14.2.0-17ubuntu3) ... 237s Selecting previously unselected package g++-x86-64-linux-gnu. 237s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 237s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 237s Selecting previously unselected package g++. 237s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 237s Unpacking g++ (4:14.2.0-1ubuntu1) ... 237s Selecting previously unselected package build-essential. 237s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 237s Unpacking build-essential (12.10ubuntu1) ... 237s Selecting previously unselected package dctrl-tools. 237s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 237s Unpacking dctrl-tools (2.24-3build3) ... 237s Selecting previously unselected package fonts-dejavu-mono. 237s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 237s Unpacking fonts-dejavu-mono (2.37-8) ... 237s Selecting previously unselected package fonts-dejavu-core. 237s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 237s Unpacking fonts-dejavu-core (2.37-8) ... 237s Selecting previously unselected package fontconfig-config. 237s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 237s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 237s Selecting previously unselected package libfontconfig1:amd64. 238s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 238s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 238s Selecting previously unselected package fontconfig. 238s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 238s Unpacking fontconfig (2.15.0-2ubuntu1) ... 238s Selecting previously unselected package fonts-font-awesome. 238s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 238s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 238s Selecting previously unselected package fonts-glyphicons-halflings. 238s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 238s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 238s Selecting previously unselected package fonts-lmodern. 238s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ... 238s Unpacking fonts-lmodern (2.005-1) ... 238s Selecting previously unselected package fonts-mathjax. 238s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 238s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 238s Selecting previously unselected package libgfortran5:amd64. 238s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 238s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 238s Selecting previously unselected package libgfortran-14-dev:amd64. 238s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 238s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 238s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 238s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 238s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 238s Selecting previously unselected package gfortran-14. 238s Preparing to unpack .../039-gfortran-14_14.2.0-17ubuntu3_amd64.deb ... 238s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 238s Selecting previously unselected package gfortran-x86-64-linux-gnu. 238s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 238s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 238s Selecting previously unselected package gfortran. 238s Preparing to unpack .../041-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 238s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 238s Selecting previously unselected package icu-devtools. 238s Preparing to unpack .../042-icu-devtools_76.1-1ubuntu2_amd64.deb ... 238s Unpacking icu-devtools (76.1-1ubuntu2) ... 238s Selecting previously unselected package javascript-common. 238s Preparing to unpack .../043-javascript-common_12_all.deb ... 238s Unpacking javascript-common (12) ... 238s Selecting previously unselected package libio-string-perl. 238s Preparing to unpack .../044-libio-string-perl_1.08-4_all.deb ... 238s Unpacking libio-string-perl (1.08-4) ... 238s Selecting previously unselected package liblatex-tounicode-perl. 238s Preparing to unpack .../045-liblatex-tounicode-perl_0.55-1_all.deb ... 238s Unpacking liblatex-tounicode-perl (0.55-1) ... 238s Selecting previously unselected package libbibtex-parser-perl. 238s Preparing to unpack .../046-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 238s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 238s Selecting previously unselected package libblas3:amd64. 238s Preparing to unpack .../047-libblas3_3.12.1-2_amd64.deb ... 238s Unpacking libblas3:amd64 (3.12.1-2) ... 238s Selecting previously unselected package libblas-dev:amd64. 238s Preparing to unpack .../048-libblas-dev_3.12.1-2_amd64.deb ... 238s Unpacking libblas-dev:amd64 (3.12.1-2) ... 238s Selecting previously unselected package libboost1.83-dev:amd64. 238s Preparing to unpack .../049-libboost1.83-dev_1.83.0-4.1ubuntu2_amd64.deb ... 238s Unpacking libboost1.83-dev:amd64 (1.83.0-4.1ubuntu2) ... 241s Selecting previously unselected package libboost-dev:amd64. 241s Preparing to unpack .../050-libboost-dev_1.83.0.2ubuntu1_amd64.deb ... 241s Unpacking libboost-dev:amd64 (1.83.0.2ubuntu1) ... 241s Selecting previously unselected package libbz2-dev:amd64. 241s Preparing to unpack .../051-libbz2-dev_1.0.8-6_amd64.deb ... 241s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 241s Selecting previously unselected package libpixman-1-0:amd64. 241s Preparing to unpack .../052-libpixman-1-0_0.44.0-3_amd64.deb ... 241s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 241s Selecting previously unselected package libxcb-render0:amd64. 241s Preparing to unpack .../053-libxcb-render0_1.17.0-2_amd64.deb ... 241s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 241s Selecting previously unselected package libxcb-shm0:amd64. 241s Preparing to unpack .../054-libxcb-shm0_1.17.0-2_amd64.deb ... 241s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 241s Selecting previously unselected package libxrender1:amd64. 241s Preparing to unpack .../055-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 241s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 241s Selecting previously unselected package libcairo2:amd64. 241s Preparing to unpack .../056-libcairo2_1.18.2-2_amd64.deb ... 241s Unpacking libcairo2:amd64 (1.18.2-2) ... 241s Selecting previously unselected package libdatrie1:amd64. 241s Preparing to unpack .../057-libdatrie1_0.2.13-3build1_amd64.deb ... 241s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 241s Selecting previously unselected package libdeflate0:amd64. 241s Preparing to unpack .../058-libdeflate0_1.23-1_amd64.deb ... 241s Unpacking libdeflate0:amd64 (1.23-1) ... 241s Selecting previously unselected package libdeflate-dev:amd64. 241s Preparing to unpack .../059-libdeflate-dev_1.23-1_amd64.deb ... 241s Unpacking libdeflate-dev:amd64 (1.23-1) ... 241s Selecting previously unselected package libgraphite2-3:amd64. 241s Preparing to unpack .../060-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 241s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 241s Selecting previously unselected package libharfbuzz0b:amd64. 241s Preparing to unpack .../061-libharfbuzz0b_10.2.0-1_amd64.deb ... 241s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 241s Selecting previously unselected package x11-common. 241s Preparing to unpack .../062-x11-common_1%3a7.7+23ubuntu3_all.deb ... 241s Unpacking x11-common (1:7.7+23ubuntu3) ... 241s Selecting previously unselected package libice6:amd64. 241s Preparing to unpack .../063-libice6_2%3a1.1.1-1_amd64.deb ... 241s Unpacking libice6:amd64 (2:1.1.1-1) ... 241s Selecting previously unselected package libicu-dev:amd64. 241s Preparing to unpack .../064-libicu-dev_76.1-1ubuntu2_amd64.deb ... 241s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 241s Selecting previously unselected package libjpeg-turbo8:amd64. 241s Preparing to unpack .../065-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 241s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 241s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 241s Preparing to unpack .../066-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ... 241s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 241s Selecting previously unselected package libjpeg8:amd64. 241s Preparing to unpack .../067-libjpeg8_8c-2ubuntu11_amd64.deb ... 241s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 241s Selecting previously unselected package libjpeg8-dev:amd64. 241s Preparing to unpack .../068-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 241s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 241s Selecting previously unselected package libjpeg-dev:amd64. 241s Preparing to unpack .../069-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 241s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 241s Selecting previously unselected package libjs-bootstrap. 241s Preparing to unpack .../070-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 241s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 241s Selecting previously unselected package libjs-popper.js. 241s Preparing to unpack .../071-libjs-popper.js_1.16.1+ds-6_all.deb ... 242s Unpacking libjs-popper.js (1.16.1+ds-6) ... 242s Selecting previously unselected package libjs-bootstrap4. 242s Preparing to unpack .../072-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 242s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 242s Selecting previously unselected package libjs-d3. 242s Preparing to unpack .../073-libjs-d3_3.5.17-4_all.deb ... 242s Unpacking libjs-d3 (3.5.17-4) ... 242s Selecting previously unselected package libjs-es5-shim. 242s Preparing to unpack .../074-libjs-es5-shim_4.6.7-2_all.deb ... 242s Unpacking libjs-es5-shim (4.6.7-2) ... 242s Selecting previously unselected package libjs-highlight.js. 242s Preparing to unpack .../075-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 242s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 242s Selecting previously unselected package libjs-jquery. 242s Preparing to unpack .../076-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 242s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 242s Selecting previously unselected package libjs-jquery-datatables. 242s Preparing to unpack .../077-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 242s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 242s Selecting previously unselected package libjs-sifter.js. 242s Preparing to unpack .../078-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 242s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 242s Selecting previously unselected package libjs-microplugin.js. 242s Preparing to unpack .../079-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 242s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 242s Selecting previously unselected package libjs-jquery-selectize.js. 242s Preparing to unpack .../080-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 242s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 242s Selecting previously unselected package libjs-jquery-ui. 242s Preparing to unpack .../081-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 242s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 242s Selecting previously unselected package libjs-json. 242s Preparing to unpack .../082-libjs-json_0~20221030+~1.0.8-1_all.deb ... 242s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 242s Selecting previously unselected package libjs-lunr. 242s Preparing to unpack .../083-libjs-lunr_2.3.9~dfsg-2_all.deb ... 242s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 242s Selecting previously unselected package libjs-prettify. 242s Preparing to unpack .../084-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 242s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 242s Selecting previously unselected package libkpathsea6:amd64. 242s Preparing to unpack .../085-libkpathsea6_2024.20240313.70630+ds-6_amd64.deb ... 242s Unpacking libkpathsea6:amd64 (2024.20240313.70630+ds-6) ... 242s Selecting previously unselected package liblapack3:amd64. 242s Preparing to unpack .../086-liblapack3_3.12.1-2_amd64.deb ... 242s Unpacking liblapack3:amd64 (3.12.1-2) ... 242s Selecting previously unselected package liblapack-dev:amd64. 242s Preparing to unpack .../087-liblapack-dev_3.12.1-2_amd64.deb ... 242s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 242s Selecting previously unselected package liblerc4:amd64. 242s Preparing to unpack .../088-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 242s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 242s Selecting previously unselected package liblua5.4-0:amd64. 242s Preparing to unpack .../089-liblua5.4-0_5.4.7-1_amd64.deb ... 242s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 242s Selecting previously unselected package libmpfi0:amd64. 242s Preparing to unpack .../090-libmpfi0_1.5.4+ds-4_amd64.deb ... 242s Unpacking libmpfi0:amd64 (1.5.4+ds-4) ... 242s Selecting previously unselected package libncurses-dev:amd64. 242s Preparing to unpack .../091-libncurses-dev_6.5+20250216-2_amd64.deb ... 242s Unpacking libncurses-dev:amd64 (6.5+20250216-2) ... 242s Selecting previously unselected package libthai-data. 242s Preparing to unpack .../092-libthai-data_0.1.29-2build1_all.deb ... 242s Unpacking libthai-data (0.1.29-2build1) ... 242s Selecting previously unselected package libthai0:amd64. 242s Preparing to unpack .../093-libthai0_0.1.29-2build1_amd64.deb ... 242s Unpacking libthai0:amd64 (0.1.29-2build1) ... 242s Selecting previously unselected package libpango-1.0-0:amd64. 242s Preparing to unpack .../094-libpango-1.0-0_1.56.2-1_amd64.deb ... 242s Unpacking libpango-1.0-0:amd64 (1.56.2-1) ... 243s Selecting previously unselected package libpangoft2-1.0-0:amd64. 243s Preparing to unpack .../095-libpangoft2-1.0-0_1.56.2-1_amd64.deb ... 243s Unpacking libpangoft2-1.0-0:amd64 (1.56.2-1) ... 243s Selecting previously unselected package libpangocairo-1.0-0:amd64. 243s Preparing to unpack .../096-libpangocairo-1.0-0_1.56.2-1_amd64.deb ... 243s Unpacking libpangocairo-1.0-0:amd64 (1.56.2-1) ... 243s Selecting previously unselected package libpaper2:amd64. 243s Preparing to unpack .../097-libpaper2_2.2.5-0.3_amd64.deb ... 243s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 243s Selecting previously unselected package libpaper-utils. 243s Preparing to unpack .../098-libpaper-utils_2.2.5-0.3_amd64.deb ... 243s Unpacking libpaper-utils (2.2.5-0.3) ... 243s Selecting previously unselected package libpcre2-16-0:amd64. 243s Preparing to unpack .../099-libpcre2-16-0_10.45-1_amd64.deb ... 243s Unpacking libpcre2-16-0:amd64 (10.45-1) ... 243s Selecting previously unselected package libpcre2-32-0:amd64. 243s Preparing to unpack .../100-libpcre2-32-0_10.45-1_amd64.deb ... 243s Unpacking libpcre2-32-0:amd64 (10.45-1) ... 243s Selecting previously unselected package libpcre2-posix3:amd64. 243s Preparing to unpack .../101-libpcre2-posix3_10.45-1_amd64.deb ... 243s Unpacking libpcre2-posix3:amd64 (10.45-1) ... 243s Selecting previously unselected package libpcre2-dev:amd64. 243s Preparing to unpack .../102-libpcre2-dev_10.45-1_amd64.deb ... 243s Unpacking libpcre2-dev:amd64 (10.45-1) ... 243s Selecting previously unselected package libpkgconf3:amd64. 243s Preparing to unpack .../103-libpkgconf3_1.8.1-4_amd64.deb ... 243s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 243s Selecting previously unselected package zlib1g-dev:amd64. 243s Preparing to unpack .../104-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 243s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 243s Selecting previously unselected package libpng-dev:amd64. 243s Preparing to unpack .../105-libpng-dev_1.6.47-1_amd64.deb ... 243s Unpacking libpng-dev:amd64 (1.6.47-1) ... 243s Selecting previously unselected package libpotrace0:amd64. 243s Preparing to unpack .../106-libpotrace0_1.16-2build1_amd64.deb ... 243s Unpacking libpotrace0:amd64 (1.16-2build1) ... 243s Selecting previously unselected package libptexenc1:amd64. 243s Preparing to unpack .../107-libptexenc1_2024.20240313.70630+ds-6_amd64.deb ... 243s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-6) ... 243s Selecting previously unselected package libreadline-dev:amd64. 243s Preparing to unpack .../108-libreadline-dev_8.2-6_amd64.deb ... 243s Unpacking libreadline-dev:amd64 (8.2-6) ... 243s Selecting previously unselected package libsharpyuv0:amd64. 243s Preparing to unpack .../109-libsharpyuv0_1.5.0-0.1_amd64.deb ... 243s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 243s Selecting previously unselected package libsm6:amd64. 243s Preparing to unpack .../110-libsm6_2%3a1.2.4-1_amd64.deb ... 243s Unpacking libsm6:amd64 (2:1.2.4-1) ... 243s Selecting previously unselected package libsynctex2:amd64. 243s 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244s Preparing to unpack .../127-zip_3.0-14ubuntu2_amd64.deb ... 244s Unpacking zip (3.0-14ubuntu2) ... 244s Selecting previously unselected package unzip. 244s Preparing to unpack .../128-unzip_6.0-28ubuntu6_amd64.deb ... 244s Unpacking unzip (6.0-28ubuntu6) ... 244s Selecting previously unselected package xdg-utils. 244s Preparing to unpack .../129-xdg-utils_1.2.1-2ubuntu1_all.deb ... 244s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 244s Selecting previously unselected package r-base-core. 244s Preparing to unpack .../130-r-base-core_4.4.3-1_amd64.deb ... 244s Unpacking r-base-core (4.4.3-1) ... 244s Selecting previously unselected package r-cran-littler. 244s Preparing to unpack .../131-r-cran-littler_0.3.20-2_amd64.deb ... 244s Unpacking r-cran-littler (0.3.20-2) ... 244s Selecting previously unselected package littler. 244s Preparing to unpack .../132-littler_0.3.20-2_all.deb ... 244s Unpacking littler (0.3.20-2) ... 244s Selecting previously unselected package node-bootstrap-sass. 244s Preparing to unpack .../133-node-bootstrap-sass_3.4.3-2_all.deb ... 244s Unpacking node-bootstrap-sass (3.4.3-2) ... 244s Selecting previously unselected package node-html5shiv. 244s Preparing to unpack .../134-node-html5shiv_3.7.3+dfsg-5_all.deb ... 244s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 244s Selecting previously unselected package node-normalize.css. 244s Preparing to unpack .../135-node-normalize.css_8.0.1-5_all.deb ... 244s Unpacking node-normalize.css (8.0.1-5) ... 244s Selecting previously unselected package pandoc-data. 244s Preparing to unpack .../136-pandoc-data_3.1.11.1-3build1_all.deb ... 244s Unpacking pandoc-data (3.1.11.1-3build1) ... 244s Selecting previously unselected package pandoc. 244s Preparing to unpack .../137-pandoc_3.1.11.1+ds-2_amd64.deb ... 244s Unpacking pandoc (3.1.11.1+ds-2) ... 245s Selecting previously unselected package liblzma-dev:amd64. 245s Preparing to unpack .../138-liblzma-dev_5.6.4-1_amd64.deb ... 245s Unpacking liblzma-dev:amd64 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previously unselected package r-cran-bit64. 245s Preparing to unpack .../150-r-cran-bit64_4.6.0-1-1ubuntu2_amd64.deb ... 245s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 245s Selecting previously unselected package r-cran-rlang. 245s Preparing to unpack .../151-r-cran-rlang_1.1.5-1_amd64.deb ... 245s Unpacking r-cran-rlang (1.1.5-1) ... 246s Selecting previously unselected package r-cran-cli. 246s Preparing to unpack .../152-r-cran-cli_3.6.4-1_amd64.deb ... 246s Unpacking r-cran-cli (3.6.4-1) ... 246s Selecting previously unselected package r-cran-glue. 246s Preparing to unpack .../153-r-cran-glue_1.8.0-1_amd64.deb ... 246s Unpacking r-cran-glue (1.8.0-1) ... 246s Selecting previously unselected package r-cran-lifecycle. 246s Preparing to unpack .../154-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 246s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 246s Selecting previously unselected package r-cran-vctrs. 246s Preparing to unpack .../155-r-cran-vctrs_0.6.5-1_amd64.deb ... 246s Unpacking r-cran-vctrs (0.6.5-1) ... 246s Selecting previously unselected package r-cran-blob. 246s Preparing to unpack .../156-r-cran-blob_1.2.4-1_all.deb ... 246s Unpacking r-cran-blob (1.2.4-1) ... 246s Selecting previously unselected package r-cran-fastmap. 246s Preparing to unpack .../157-r-cran-fastmap_1.2.0-1_amd64.deb ... 246s Unpacking r-cran-fastmap (1.2.0-1) ... 246s Selecting previously unselected package r-cran-cachem. 246s Preparing to unpack .../158-r-cran-cachem_1.1.0-1_amd64.deb ... 246s Unpacking r-cran-cachem (1.1.0-1) ... 246s Selecting previously unselected package r-cran-memoise. 246s Preparing to unpack .../159-r-cran-memoise_2.0.1-1_all.deb ... 246s Unpacking r-cran-memoise (2.0.1-1) ... 246s Selecting previously unselected package r-cran-pkgconfig. 246s Preparing to unpack .../160-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 246s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 246s Selecting previously unselected package r-cran-plogr. 246s Preparing to unpack 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previously unselected package r-cran-sys. 246s Preparing to unpack .../167-r-cran-sys_3.4.3-1_amd64.deb ... 246s Unpacking r-cran-sys (3.4.3-1) ... 246s Selecting previously unselected package r-cran-askpass. 246s Preparing to unpack .../168-r-cran-askpass_1.2.1-1_amd64.deb ... 246s Unpacking r-cran-askpass (1.2.1-1) ... 246s Selecting previously unselected package r-cran-openssl. 246s Preparing to unpack .../169-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 246s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 246s Selecting previously unselected package r-cran-r6. 246s Preparing to unpack .../170-r-cran-r6_2.6.1-1_all.deb ... 246s Unpacking r-cran-r6 (2.6.1-1) ... 246s Selecting previously unselected package r-cran-httr. 246s Preparing to unpack .../171-r-cran-httr_1.4.7+dfsg-1_all.deb ... 246s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 246s Selecting previously unselected package r-cran-png. 246s Preparing to unpack .../172-r-cran-png_0.1-8-1build2_amd64.deb ... 246s Unpacking r-cran-png (0.1-8-1build2) ... 246s Selecting previously unselected package r-bioc-zlibbioc. 246s Preparing to unpack .../173-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 246s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 246s Selecting previously unselected package r-bioc-xvector. 246s Preparing to unpack .../174-r-bioc-xvector_0.46.0-2_amd64.deb ... 246s Unpacking r-bioc-xvector (0.46.0-2) ... 246s Selecting previously unselected package r-bioc-ucsc.utils. 246s Preparing to unpack .../175-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 246s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 246s Selecting previously unselected package r-bioc-genomeinfodbdata. 246s Preparing to unpack .../176-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 246s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 246s Selecting previously unselected package r-bioc-genomeinfodb. 246s Preparing to unpack .../177-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 246s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 247s Selecting previously unselected package r-cran-crayon. 247s Preparing to unpack .../178-r-cran-crayon_1.5.3-1_all.deb ... 247s Unpacking r-cran-crayon (1.5.3-1) ... 247s Selecting previously unselected package r-bioc-biostrings. 247s Preparing to unpack .../179-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 247s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 247s Selecting previously unselected package r-bioc-keggrest. 247s Preparing to unpack .../180-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 247s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 247s Selecting previously unselected package r-bioc-annotationdbi. 247s Preparing to unpack .../181-r-bioc-annotationdbi_1.68.0-2_all.deb ... 247s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 247s Selecting previously unselected package r-bioc-biocio. 247s Preparing to unpack .../182-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 247s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 247s Selecting previously unselected package r-cran-formatr. 247s Preparing to unpack .../183-r-cran-formatr_1.14-2_all.deb ... 247s Unpacking r-cran-formatr (1.14-2) ... 247s Selecting previously unselected package r-cran-lambda.r. 247s Preparing to unpack .../184-r-cran-lambda.r_1.2.4-2build1_all.deb ... 247s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 247s Selecting previously unselected package r-cran-futile.options. 247s Preparing to unpack .../185-r-cran-futile.options_1.0.1-3build1_all.deb ... 247s Unpacking r-cran-futile.options (1.0.1-3build1) ... 247s Selecting previously unselected package r-cran-futile.logger. 247s Preparing to unpack .../186-r-cran-futile.logger_1.4.3-4build1_all.deb ... 247s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 247s Selecting previously unselected package r-cran-snow. 247s Preparing to unpack .../187-r-cran-snow_1%3a0.4.4-2_all.deb ... 247s Unpacking r-cran-snow (1:0.4.4-2) ... 247s Selecting previously unselected package r-cran-codetools. 247s Preparing to unpack .../188-r-cran-codetools_0.2-20-1_all.deb ... 247s Unpacking r-cran-codetools (0.2-20-1) ... 247s Selecting previously unselected package r-cran-bh. 247s Preparing to unpack .../189-r-cran-bh_1.84.0-1_all.deb ... 247s Unpacking r-cran-bh (1.84.0-1) ... 247s Selecting previously unselected package r-bioc-biocparallel. 247s Preparing to unpack .../190-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 247s Unpacking r-bioc-biocparallel (1.40.0-2) ... 247s Selecting previously unselected package r-cran-base64enc. 247s Preparing to unpack .../191-r-cran-base64enc_0.1-3-3_amd64.deb ... 247s Unpacking r-cran-base64enc (0.1-3-3) ... 247s Selecting previously unselected package r-cran-digest. 247s Preparing to unpack .../192-r-cran-digest_0.6.37-1_amd64.deb ... 247s Unpacking r-cran-digest (0.6.37-1) ... 247s Selecting previously unselected package r-cran-htmltools. 247s Preparing to unpack .../193-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 247s Unpacking r-cran-htmltools (0.5.8.1-1) ... 247s Selecting previously unselected package r-cran-evaluate. 247s Preparing to unpack .../194-r-cran-evaluate_1.0.3-1_all.deb ... 247s Unpacking r-cran-evaluate (1.0.3-1) ... 247s Selecting previously unselected package r-cran-xfun. 247s Preparing to unpack .../195-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 247s Unpacking r-cran-xfun (0.51+dfsg-1) ... 247s Selecting previously unselected package r-cran-highr. 247s Preparing to unpack .../196-r-cran-highr_0.11+dfsg-1_all.deb ... 247s Unpacking r-cran-highr (0.11+dfsg-1) ... 247s Selecting previously unselected package r-cran-yaml. 247s Preparing to unpack .../197-r-cran-yaml_2.3.10-1_amd64.deb ... 247s Unpacking r-cran-yaml (2.3.10-1) ... 247s Selecting previously unselected package libjs-mathjax. 247s Preparing to unpack .../198-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 247s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 248s Selecting previously unselected package r-cran-knitr. 248s Preparing to unpack .../199-r-cran-knitr_1.49+dfsg-1_all.deb ... 248s Unpacking r-cran-knitr (1.49+dfsg-1) ... 248s Selecting previously unselected package r-cran-jquerylib. 248s Preparing to unpack .../200-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 248s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 248s Selecting previously unselected package r-cran-fs. 248s Preparing to unpack .../201-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 248s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 248s Selecting previously unselected package r-cran-rappdirs. 248s Preparing to unpack .../202-r-cran-rappdirs_0.3.3-1_amd64.deb ... 248s Unpacking r-cran-rappdirs (0.3.3-1) ... 248s Selecting previously unselected package r-cran-sass. 248s Preparing to unpack .../203-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 248s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 248s Selecting previously unselected package r-cran-bslib. 248s Preparing to unpack .../204-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 248s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 248s Selecting previously unselected package r-cran-fontawesome. 248s Preparing to unpack .../205-r-cran-fontawesome_0.5.3-1_all.deb ... 248s Unpacking r-cran-fontawesome (0.5.3-1) ... 248s Selecting previously unselected package r-cran-tinytex. 248s Preparing to unpack .../206-r-cran-tinytex_0.56-1_all.deb ... 248s Unpacking r-cran-tinytex (0.56-1) ... 248s Selecting previously unselected package libjs-modernizr. 248s Preparing to unpack .../207-libjs-modernizr_3.13.0-0.1_all.deb ... 248s Unpacking libjs-modernizr (3.13.0-0.1) ... 248s Selecting previously unselected package r-cran-pkgkitten. 248s Preparing to unpack .../208-r-cran-pkgkitten_0.2.4-1_all.deb ... 248s Unpacking r-cran-pkgkitten (0.2.4-1) ... 248s Selecting previously unselected package r-cran-rcpp. 248s Preparing to unpack .../209-r-cran-rcpp_1.0.14-1_amd64.deb ... 248s Unpacking r-cran-rcpp (1.0.14-1) ... 249s Selecting previously unselected package r-cran-later. 249s Preparing to unpack .../210-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 249s Unpacking r-cran-later (1.4.1+dfsg-1) ... 249s Selecting previously unselected package r-cran-magrittr. 249s Preparing to unpack .../211-r-cran-magrittr_2.0.3-1_amd64.deb ... 249s Unpacking r-cran-magrittr (2.0.3-1) ... 249s Selecting previously unselected package r-cran-promises. 249s Preparing to unpack .../212-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 249s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 249s Selecting previously unselected package r-cran-httpuv. 249s Preparing to unpack .../213-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 249s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 249s Selecting previously unselected package r-cran-xtable. 249s Preparing to unpack .../214-r-cran-xtable_1%3a1.8-4-2_all.deb ... 249s Unpacking r-cran-xtable (1:1.8-4-2) ... 249s Selecting previously unselected package r-cran-sourcetools. 249s Preparing to unpack .../215-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 249s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 249s Selecting previously unselected package r-cran-withr. 249s Preparing to unpack .../216-r-cran-withr_3.0.2+dfsg-1_all.deb ... 249s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 249s Selecting previously unselected package r-cran-commonmark. 249s Preparing to unpack .../217-r-cran-commonmark_1.9.2-2_amd64.deb ... 249s Unpacking r-cran-commonmark (1.9.2-2) ... 249s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 249s Preparing to unpack .../218-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 249s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 249s Selecting previously unselected package r-cran-shiny. 249s Preparing to unpack .../219-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 249s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 249s Selecting previously unselected package r-cran-rmarkdown. 249s Preparing to unpack .../220-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 249s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 249s Selecting previously unselected package r-cran-bookdown. 249s Preparing to unpack .../221-r-cran-bookdown_0.42+dfsg-1_all.deb ... 249s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 249s Selecting previously unselected package r-cran-biocmanager. 249s Preparing to unpack .../222-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 249s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 249s Selecting previously unselected package tex-common. 249s Preparing to unpack .../223-tex-common_6.19_all.deb ... 249s Unpacking tex-common (6.19) ... 249s Selecting previously unselected package t1utils. 249s Preparing to unpack .../224-t1utils_1.41-4build3_amd64.deb ... 249s Unpacking t1utils (1.41-4build3) ... 249s Selecting previously unselected package texlive-binaries. 249s Preparing to unpack .../225-texlive-binaries_2024.20240313.70630+ds-6_amd64.deb ... 249s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ... 250s Selecting previously unselected package texlive-base. 250s Preparing to unpack .../226-texlive-base_2024.20250114-1_all.deb ... 250s Unpacking texlive-base (2024.20250114-1) ... 250s Selecting previously unselected package texlive-latex-base. 250s Preparing to unpack .../227-texlive-latex-base_2024.20250114-1_all.deb ... 250s Unpacking texlive-latex-base (2024.20250114-1) ... 251s Selecting previously unselected package texlive-bibtex-extra. 251s Preparing to unpack .../228-texlive-bibtex-extra_2024.20250114-1_all.deb ... 251s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 252s Selecting previously unselected package r-bioc-biocversion. 252s Preparing to unpack .../229-r-bioc-biocversion_3.20.0-2_all.deb ... 252s Unpacking r-bioc-biocversion (3.20.0-2) ... 252s Selecting previously unselected package r-bioc-biocstyle. 252s Preparing to unpack .../230-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 252s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 252s Selecting previously unselected package r-bioc-genomicranges. 252s Preparing to unpack .../231-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 252s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 252s Selecting previously unselected package r-cran-xml. 252s Preparing to unpack .../232-r-cran-xml_3.99-0.18-1_amd64.deb ... 252s Unpacking r-cran-xml (3.99-0.18-1) ... 252s Selecting previously unselected package r-cran-bitops. 252s Preparing to unpack .../233-r-cran-bitops_1.0-9-1_amd64.deb ... 252s Unpacking r-cran-bitops (1.0-9-1) ... 252s Selecting previously unselected package r-bioc-rhtslib. 252s Preparing to unpack .../234-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ... 252s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 253s Selecting previously unselected package r-bioc-rsamtools. 253s Preparing to unpack .../235-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ... 253s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 253s Selecting previously unselected package r-cran-matrixstats. 253s Preparing to unpack .../236-r-cran-matrixstats_1.5.0-1_amd64.deb ... 253s Unpacking r-cran-matrixstats (1.5.0-1) ... 253s Selecting previously unselected package r-bioc-matrixgenerics. 253s Preparing to unpack .../237-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 253s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 253s Selecting previously unselected package r-cran-lattice. 253s Preparing to unpack .../238-r-cran-lattice_0.22-6-1_amd64.deb ... 253s Unpacking r-cran-lattice (0.22-6-1) ... 253s Selecting previously unselected package r-cran-matrix. 253s Preparing to unpack .../239-r-cran-matrix_1.7-3-1_amd64.deb ... 253s Unpacking r-cran-matrix (1.7-3-1) ... 253s Selecting previously unselected package r-cran-abind. 253s Preparing to unpack .../240-r-cran-abind_1.4-8-1_all.deb ... 253s Unpacking r-cran-abind (1.4-8-1) ... 253s Selecting previously unselected package r-bioc-s4arrays. 253s Preparing to unpack .../241-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 253s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 253s Selecting previously unselected package r-bioc-sparsearray. 253s Preparing to unpack .../242-r-bioc-sparsearray_1.6.2+dfsg-1_amd64.deb ... 253s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 253s Selecting previously unselected package r-bioc-delayedarray. 253s Preparing to unpack .../243-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 253s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 253s Selecting previously unselected package r-bioc-summarizedexperiment. 253s Preparing to unpack .../244-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 253s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 253s Selecting previously unselected package r-bioc-genomicalignments. 253s Preparing to unpack .../245-r-bioc-genomicalignments_1.42.0-2_amd64.deb ... 253s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 253s Selecting previously unselected package r-cran-rcurl. 253s Preparing to unpack .../246-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 253s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 253s Selecting previously unselected package r-cran-rjson. 253s Preparing to unpack .../247-r-cran-rjson_0.2.23-1_amd64.deb ... 253s Unpacking r-cran-rjson (0.2.23-1) ... 253s Selecting previously unselected package r-cran-restfulr. 253s Preparing to unpack .../248-r-cran-restfulr_0.0.15-1_amd64.deb ... 253s Unpacking r-cran-restfulr (0.0.15-1) ... 253s Selecting previously unselected package r-bioc-rtracklayer. 253s Preparing to unpack .../249-r-bioc-rtracklayer_1.66.0-2_amd64.deb ... 253s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 253s Selecting previously unselected package r-bioc-bsgenome. 253s Preparing to unpack .../250-r-bioc-bsgenome_1.74.0-2_all.deb ... 253s Unpacking r-bioc-bsgenome (1.74.0-2) ... 253s Selecting previously unselected package r-cran-locfit. 254s Preparing to unpack .../251-r-cran-locfit_1.5-9.12-1_amd64.deb ... 254s Unpacking r-cran-locfit (1.5-9.12-1) ... 254s Selecting previously unselected package r-cran-gtable. 254s Preparing to unpack .../252-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 254s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 254s Selecting previously unselected package r-cran-isoband. 254s Preparing to unpack .../253-r-cran-isoband_0.2.7-1_amd64.deb ... 254s Unpacking r-cran-isoband (0.2.7-1) ... 254s Selecting previously unselected package r-cran-mass. 254s Preparing to unpack .../254-r-cran-mass_7.3-64-1_amd64.deb ... 254s Unpacking r-cran-mass (7.3-64-1) ... 254s Selecting previously unselected package r-cran-nlme. 254s Preparing to unpack .../255-r-cran-nlme_3.1.167-1_amd64.deb ... 254s Unpacking r-cran-nlme (3.1.167-1) ... 254s Selecting previously unselected package r-cran-mgcv. 254s Preparing to unpack .../256-r-cran-mgcv_1.9-1-1_amd64.deb ... 254s Unpacking r-cran-mgcv (1.9-1-1) ... 254s Selecting previously unselected package r-cran-farver. 254s Preparing to unpack .../257-r-cran-farver_2.1.2-1_amd64.deb ... 254s Unpacking r-cran-farver (2.1.2-1) ... 254s Selecting previously unselected package r-cran-labeling. 254s Preparing to unpack .../258-r-cran-labeling_0.4.3-1_all.deb ... 254s Unpacking r-cran-labeling (0.4.3-1) ... 254s Selecting previously unselected package r-cran-colorspace. 254s Preparing to unpack .../259-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 254s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 254s Selecting previously unselected package r-cran-munsell. 254s Preparing to unpack .../260-r-cran-munsell_0.5.1-1_all.deb ... 254s Unpacking r-cran-munsell (0.5.1-1) ... 254s Selecting previously unselected package r-cran-rcolorbrewer. 254s Preparing to unpack .../261-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 254s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 254s Selecting previously unselected package r-cran-viridislite. 254s Preparing to unpack .../262-r-cran-viridislite_0.4.2-2_all.deb ... 254s Unpacking r-cran-viridislite (0.4.2-2) ... 254s Selecting previously unselected package r-cran-scales. 254s Preparing to unpack .../263-r-cran-scales_1.3.0-1_all.deb ... 254s Unpacking r-cran-scales (1.3.0-1) ... 254s Selecting previously unselected package r-cran-fansi. 254s Preparing to unpack .../264-r-cran-fansi_1.0.5-1_amd64.deb ... 254s Unpacking r-cran-fansi (1.0.5-1) ... 254s Selecting previously unselected package r-cran-utf8. 254s Preparing to unpack .../265-r-cran-utf8_1.2.4-1_amd64.deb ... 254s Unpacking r-cran-utf8 (1.2.4-1) ... 254s Selecting previously unselected package r-cran-pillar. 254s Preparing to unpack .../266-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 254s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 254s Selecting previously unselected package r-cran-tibble. 254s Preparing to unpack .../267-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 254s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 254s Selecting previously unselected package r-cran-ggplot2. 254s Preparing to unpack .../268-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 254s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 254s Selecting previously unselected package r-cran-rcpparmadillo. 254s Preparing to unpack .../269-r-cran-rcpparmadillo_14.2.3-1-1_amd64.deb ... 254s Unpacking r-cran-rcpparmadillo (14.2.3-1-1) ... 255s Selecting previously unselected package r-bioc-deseq2. 255s Preparing to unpack .../270-r-bioc-deseq2_1.46.0+dfsg-2_amd64.deb ... 255s Unpacking r-bioc-deseq2 (1.46.0+dfsg-2) ... 255s Selecting previously unselected package r-cran-statmod. 255s Preparing to unpack .../271-r-cran-statmod_1.5.0-1_amd64.deb ... 255s Unpacking r-cran-statmod (1.5.0-1) ... 255s Selecting previously unselected package r-bioc-limma. 255s Preparing to unpack .../272-r-bioc-limma_3.62.2+dfsg-1_amd64.deb ... 255s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 255s Selecting previously unselected package r-bioc-edger. 255s Preparing to unpack .../273-r-bioc-edger_4.4.2+dfsg-1_amd64.deb ... 255s Unpacking r-bioc-edger (4.4.2+dfsg-1) ... 255s Selecting previously unselected package r-bioc-genomicfeatures. 255s Preparing to unpack .../274-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ... 255s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 255s Selecting previously unselected package r-bioc-pwalign. 255s Preparing to unpack .../275-r-bioc-pwalign_1.2.0-2_amd64.deb ... 255s Unpacking r-bioc-pwalign (1.2.0-2) ... 255s Selecting previously unselected package r-cran-hwriter. 255s Preparing to unpack .../276-r-cran-hwriter_1.3.2.1-1_all.deb ... 255s Unpacking r-cran-hwriter (1.3.2.1-1) ... 255s Selecting previously unselected package r-cran-jpeg. 255s Preparing to unpack .../277-r-cran-jpeg_0.1-10-1_amd64.deb ... 255s Unpacking r-cran-jpeg (0.1-10-1) ... 255s Selecting previously unselected package r-cran-deldir. 255s Preparing to unpack .../278-r-cran-deldir_2.0-4-1build1_amd64.deb ... 255s Unpacking r-cran-deldir (2.0-4-1build1) ... 255s Selecting previously unselected package r-cran-rcppeigen. 255s Preparing to unpack .../279-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 255s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 255s Selecting previously unselected package r-cran-interp. 255s Preparing to unpack .../280-r-cran-interp_1.1-6-1_amd64.deb ... 255s Unpacking r-cran-interp (1.1-6-1) ... 255s Selecting previously unselected package r-cran-latticeextra. 255s Preparing to unpack .../281-r-cran-latticeextra_0.6-30-1_all.deb ... 255s Unpacking r-cran-latticeextra (0.6-30-1) ... 255s Selecting previously unselected package r-bioc-shortread. 255s Preparing to unpack .../282-r-bioc-shortread_1.64.0-3_amd64.deb ... 255s Unpacking r-bioc-shortread (1.64.0-3) ... 255s Selecting previously unselected package r-cran-runit. 255s Preparing to unpack .../283-r-cran-runit_0.4.33-1_all.deb ... 255s Unpacking r-cran-runit (0.4.33-1) ... 255s Setting up libjs-json (0~20221030+~1.0.8-1) ... 255s Setting up javascript-common (12) ... 255s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 255s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 255s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 255s Setting up libncurses-dev:amd64 (6.5+20250216-2) ... 255s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 255s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 255s Setting up libxpm4:amd64 (1:3.5.17-1build2) ... 255s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 255s Setting up 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r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 261s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 261s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 261s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 261s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 261s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 261s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 261s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 261s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 261s Setting up r-cran-bookdown (0.42+dfsg-1) ... 261s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 261s Setting up r-bioc-pwalign (1.2.0-2) ... 261s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 261s Setting up r-bioc-deseq2 (1.46.0+dfsg-2) ... 261s Setting up r-bioc-annotationdbi (1.68.0-2) ... 261s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 261s Setting up r-bioc-genomicalignments (1.42.0-2) ... 261s Setting up r-bioc-rtracklayer (1.66.0-2) ... 261s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 261s Setting up r-bioc-shortread (1.64.0-3) ... 261s Setting up r-bioc-bsgenome (1.74.0-2) ... 261s Processing triggers for libc-bin (2.41-1ubuntu2) ... 261s Processing triggers for man-db (2.13.0-1) ... 263s Processing triggers for install-info (7.1.1-1) ... 263s Processing triggers for tex-common (6.19) ... 263s Running updmap-sys. This may take some time... done. 263s Running mktexlsr /var/lib/texmf ... done. 263s Building format(s) --all. 287s This may take some time... done. 288s autopkgtest [22:03:25]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 288s autopkgtest [22:03:25]: test pkg-r-autopkgtest: [----------------------- 288s Test: Try to load the R library GenomicAlignments 288s 288s R version 4.4.3 (2025-02-28) -- "Trophy Case" 288s Copyright (C) 2025 The R Foundation for Statistical Computing 288s Platform: x86_64-pc-linux-gnu 288s 288s R is free software and comes with ABSOLUTELY NO WARRANTY. 288s You are welcome to redistribute it under certain conditions. 288s Type 'license()' or 'licence()' for distribution details. 288s 288s R is a collaborative project with many contributors. 288s Type 'contributors()' for more information and 288s 'citation()' on how to cite R or R packages in publications. 288s 288s Type 'demo()' for some demos, 'help()' for on-line help, or 288s 'help.start()' for an HTML browser interface to help. 288s Type 'q()' to quit R. 288s 289s > library('GenomicAlignments') 289s Loading required package: BiocGenerics 289s 289s Attaching package: ‘BiocGenerics’ 289s 289s The following objects are masked from ‘package:stats’: 289s 289s IQR, mad, sd, var, xtabs 289s 289s The following objects are masked from ‘package:base’: 289s 289s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 289s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 289s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 289s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 289s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 289s table, tapply, union, unique, unsplit, which.max, which.min 289s 289s Loading required package: S4Vectors 289s Loading required package: stats4 289s 289s Attaching package: ‘S4Vectors’ 289s 289s The following object is masked from ‘package:utils’: 289s 289s findMatches 289s 289s The following objects are masked from ‘package:base’: 289s 289s expand.grid, I, unname 289s 289s Loading required package: IRanges 290s Loading required package: GenomeInfoDb 290s Loading required package: GenomicRanges 291s Loading required package: SummarizedExperiment 291s Loading required package: MatrixGenerics 291s Loading required package: matrixStats 291s 291s Attaching package: ‘MatrixGenerics’ 291s 291s The following objects are masked from ‘package:matrixStats’: 291s 291s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 291s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 291s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 291s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 291s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 291s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 291s colWeightedMeans, colWeightedMedians, colWeightedSds, 291s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 291s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 291s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 291s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 291s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 291s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 291s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 291s rowWeightedSds, rowWeightedVars 291s 291s Loading required package: Biobase 291s Welcome to Bioconductor 291s 291s Vignettes contain introductory material; view with 291s 'browseVignettes()'. To cite Bioconductor, see 291s 'citation("Biobase")', and for packages 'citation("pkgname")'. 291s 291s 291s Attaching package: ‘Biobase’ 291s 291s The following object is masked from ‘package:MatrixGenerics’: 291s 291s rowMedians 291s 291s The following objects are masked from ‘package:matrixStats’: 291s 291s anyMissing, rowMedians 291s 294s Loading required package: Biostrings 294s Loading required package: XVector 294s 294s Attaching package: ‘Biostrings’ 294s 294s The following object is masked from ‘package:base’: 294s 294s strsplit 294s 294s Loading required package: Rsamtools 295s > 295s > 295s Other tests are currently unsupported! 295s They will be progressively added. 295s autopkgtest [22:03:32]: test pkg-r-autopkgtest: -----------------------] 296s autopkgtest [22:03:33]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 296s pkg-r-autopkgtest PASS 296s autopkgtest [22:03:33]: @@@@@@@@@@@@@@@@@@@@ summary 296s pkg-r-autopkgtest PASS 301s nova [W] Skipping flock for amd64 301s Creating nova instance adt-plucky-amd64-r-bioc-genomicalignments-20250315-215836-juju-7f2275-prod-proposed-migration-environment-2-3666f58b-100f-4030-b290-e7421d6243ca from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 301s nova [W] Timed out waiting for 5a12859a-7625-44c2-8844-55a377b96d97 to get deleted.