0s autopkgtest [21:58:20]: starting date and time: 2025-03-15 21:58:20+0000 0s autopkgtest [21:58:20]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [21:58:20]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7p9gwcg8/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-ebseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-4.secgroup --name adt-plucky-amd64-r-bioc-ebseq-20250315-215820-juju-7f2275-prod-proposed-migration-environment-2-6b8fc445-f10b-4062-bc6d-b2efacf91cdb --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 51s autopkgtest [21:59:11]: testbed dpkg architecture: amd64 51s autopkgtest [21:59:11]: testbed apt version: 2.9.31ubuntu1 51s autopkgtest [21:59:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup 51s autopkgtest [21:59:11]: testbed release detected to be: None 51s autopkgtest [21:59:11]: updating testbed package index (apt update) 51s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 51s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 51s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 51s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 51s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 51s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 51s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 51s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 51s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 51s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 51s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 51s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 51s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 51s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 51s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 51s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 51s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 52s Fetched 1265 kB in 0s (6298 kB/s) 52s Reading package lists... 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 53s Calculating upgrade... 53s Calculating upgrade... 54s The following package was automatically installed and is no longer required: 54s libnl-genl-3-200 54s Use 'sudo apt autoremove' to remove it. 54s The following NEW packages will be installed: 54s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 54s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 54s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 54s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 54s The following packages will be upgraded: 54s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 54s cloud-init cloud-init-base curl dosfstools fwupd gir1.2-girepository-2.0 54s gir1.2-glib-2.0 htop hwdata libapparmor1 libapt-pkg7.0 libaudit-common 54s libaudit1 libbinutils libbrotli1 libcap-ng0 libctf-nobfd0 libctf0 54s libcurl3t64-gnutls libcurl4t64 libestr0 libfwupd3 libgirepository-1.0-1 54s libglib2.0-0t64 libglib2.0-data libgprofng0 libjemalloc2 liblz4-1 liblzma5 54s libmm-glib0 libncurses6 libncursesw6 libnl-3-200 libnl-genl-3-200 54s libnl-route-3-200 libpci3 libpython3-stdlib libpython3.13 54s libpython3.13-minimal libpython3.13-stdlib libselinux1 libsframe1 54s libsqlite3-0 libtinfo6 libxml2 linux-firmware linux-generic 54s linux-headers-generic linux-headers-virtual linux-image-generic 54s linux-image-virtual linux-libc-dev linux-tools-common linux-virtual 54s media-types ncurses-base ncurses-bin ncurses-term pci.ids pciutils 54s pinentry-curses python-apt-common python3 python3-apt python3-cffi-backend 54s python3-dbus python3-gi python3-jinja2 python3-lazr.uri python3-markupsafe 54s python3-minimal python3-systemd python3-yaml python3.13 python3.13-gdbm 54s python3.13-minimal rsync rsyslog strace xz-utils 54s 86 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 54s Need to get 807 MB of archives. 54s After this operation, 326 MB of additional disk space will be used. 54s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 54s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 54s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 54s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 54s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 54s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 54s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 54s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 54s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 54s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 54s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 54s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 54s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 54s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 54s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 54s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 54s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 54s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 54s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 54s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 54s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 54s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 54s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 54s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 54s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 54s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 54s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 54s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 54s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 54s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 54s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 54s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 54s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 54s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 54s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 54s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 54s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 54s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 54s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 54s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 54s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 54s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 54s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 54s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 54s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 54s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 54s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 54s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 54s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 54s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 54s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 54s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 54s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 54s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 54s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 54s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 54s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 54s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 54s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 54s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 54s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 54s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 54s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 54s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 54s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 54s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 54s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 54s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 54s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 54s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 54s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 54s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 54s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 54s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 54s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 54s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 54s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 54s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 60s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 60s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 60s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 61s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 61s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 61s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 61s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 61s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 61s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 61s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 61s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 61s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 61s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 61s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 61s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 61s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 61s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 61s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 61s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 61s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 62s Preconfiguring packages ... 62s Fetched 807 MB in 7s (110 MB/s) 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 62s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ... 62s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ... 62s Setting up ncurses-bin (6.5+20250216-2) ... 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 62s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... 62s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ... 62s Setting up ncurses-base (6.5+20250216-2) ... 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 62s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ... 62s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ... 63s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ... 63s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ... 63s Setting up liblz4-1:amd64 (1.10.0-4) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 63s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ... 63s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ... 63s Setting up liblzma5:amd64 (5.6.4-1) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 63s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 63s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 63s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 63s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 63s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 63s Setting up apt (2.9.33) ... 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 64s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 64s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 64s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 64s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 64s Setting up python3-minimal (3.13.2-2) ... 64s (Reading database ... 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67s Unpacking python3-apt (2.9.9build1) over (2.9.9) ... 67s Preparing to unpack .../10-python3-cffi-backend_1.17.1-2build2_amd64.deb ... 67s Unpacking python3-cffi-backend:amd64 (1.17.1-2build2) over (1.17.1-2build1) ... 67s Preparing to unpack .../11-python3-dbus_1.3.2-5build5_amd64.deb ... 67s Unpacking python3-dbus (1.3.2-5build5) over (1.3.2-5build4) ... 67s Preparing to unpack .../12-python3-gi_3.50.0-4build1_amd64.deb ... 67s Unpacking python3-gi (3.50.0-4build1) over (3.50.0-4) ... 67s Preparing to unpack .../13-python3-yaml_6.0.2-1build2_amd64.deb ... 67s Unpacking python3-yaml (6.0.2-1build2) over (6.0.2-1build1) ... 67s Preparing to unpack .../14-rsyslog_8.2412.0-2ubuntu2_amd64.deb ... 67s Unpacking rsyslog (8.2412.0-2ubuntu2) over (8.2412.0-2ubuntu1) ... 67s Preparing to unpack .../15-apparmor_4.1.0~beta5-0ubuntu8_amd64.deb ... 68s Unpacking apparmor (4.1.0~beta5-0ubuntu8) over (4.1.0~beta5-0ubuntu6) ... 68s Preparing to unpack .../16-dosfstools_4.2-1.2_amd64.deb ... 68s 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Preparing to unpack .../68-python3-systemd_235-1build6_amd64.deb ... 80s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 80s Preparing to unpack .../69-python3.13-gdbm_3.13.2-2_amd64.deb ... 80s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 80s Preparing to unpack .../70-cloud-init_25.1-0ubuntu3_all.deb ... 80s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 81s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 81s Setting up media-types (13.0.0) ... 81s Installing new version of config file /etc/mime.types ... 81s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 81s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 81s Setting up pci.ids (0.0~2025.03.09-1) ... 81s Setting up apt-utils (2.9.33) ... 81s Setting up libdebuginfod-common (0.192-4) ... 81s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 81s Setting up bpftool (7.6.0+6.14.0-10.10) ... 81s Setting up libestr0:amd64 (0.1.11-2) ... 81s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 81s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 81s Setting up dosfstools (4.2-1.2) ... 81s Setting up rsyslog (8.2412.0-2ubuntu2) ... 81s info: The user `syslog' is already a member of `adm'. 82s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 82s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 82s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 82s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 82s Setting up linux-headers-generic (6.14.0-10.10) ... 82s Setting up libjemalloc2:amd64 (5.3.0-3) ... 82s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 82s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 82s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 82s Installing new version of config file /etc/apparmor.d/openvpn ... 83s Reloading AppArmor profiles 84s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 84s No schema files found: doing nothing. 84s Setting up libglib2.0-data (2.84.0-1) ... 84s Setting up libncurses6:amd64 (6.5+20250216-2) ... 84s Setting up strace (6.13+ds-1ubuntu1) ... 84s Setting up xz-utils (5.6.4-1) ... 84s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 84s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 86s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 86s Setting up libpci3:amd64 (1:3.13.0-2) ... 86s Setting up python-apt-common (2.9.9build1) ... 86s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 86s Setting up pnp.ids (0.393-3) ... 86s Setting up libnl-3-200:amd64 (3.7.0-1) ... 86s Setting up python3.13-minimal (3.13.2-2) ... 87s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 87s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 87s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 87s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 87s Setting up rsync (3.4.1+ds1-3) ... 88s rsync.service is a disabled or a static unit not running, not starting it. 88s Setting up python3.13-gdbm (3.13.2-2) ... 88s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 88s Setting up ncurses-term (6.5+20250216-2) ... 88s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 88s Setting up libpython3.13:amd64 (3.13.2-2) ... 88s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 88s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 88s Setting up linux-headers-virtual (6.14.0-10.10) ... 88s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 88s Setting up python3.13 (3.13.2-2) ... 88s Setting up htop (3.4.0-2) ... 88s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 91s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 91s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 91s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 91s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 91s Setting up libfwupd3:amd64 (2.0.6-4) ... 91s Setting up python3 (3.13.2-2) ... 91s Setting up python3-markupsafe (2.1.5-1build4) ... 91s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 93s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 93s Setting up hwdata (0.393-3) ... 93s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 93s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 93s Setting up linux-perf (6.14.0-10.10) ... 93s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 93s Setting up python3-gi (3.50.0-4build1) ... 93s Setting up pciutils (1:3.13.0-2) ... 93s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 93s Setting up curl (8.12.1-3ubuntu1) ... 93s Setting up linux-image-virtual (6.14.0-10.10) ... 93s Setting up linux-tools-common (6.14.0-10.10) ... 93s Setting up fwupd (2.0.6-4) ... 94s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 94s fwupd.service is a disabled or a static unit not running, not starting it. 94s Setting up python3-systemd (235-1build6) ... 94s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 94s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 94s Setting up linux-image-generic (6.14.0-10.10) ... 94s Setting up python3-dbus (1.3.2-5build5) ... 94s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 94s Setting up linux-generic (6.14.0-10.10) ... 94s Setting up python3-apt (2.9.9build1) ... 94s Setting up python3-yaml (6.0.2-1build2) ... 94s Setting up python3-lazr.uri (1.0.6-6) ... 95s Setting up binutils (2.44-3ubuntu1) ... 95s Setting up cloud-init-base (25.1-0ubuntu3) ... 96s Setting up linux-virtual (6.14.0-10.10) ... 96s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 96s Setting up cloud-init (25.1-0ubuntu3) ... 96s Processing triggers for systemd (257.3-1ubuntu3) ... 96s Processing triggers for man-db (2.13.0-1) ... 98s Processing triggers for dbus (1.16.2-1ubuntu1) ... 98s Processing triggers for libc-bin (2.41-1ubuntu1) ... 98s Processing triggers for initramfs-tools (0.146ubuntu1) ... 98s update-initramfs: Generating /boot/initrd.img-6.12.0-16-generic 98s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 108s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 108s /etc/kernel/postinst.d/initramfs-tools: 108s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 108s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 118s /etc/kernel/postinst.d/zz-update-grub: 118s Sourcing file `/etc/default/grub' 118s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 118s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 118s Generating grub configuration file ... 118s Found linux image: /boot/vmlinuz-6.14.0-10-generic 118s Found initrd image: /boot/initrd.img-6.14.0-10-generic 119s Found linux image: /boot/vmlinuz-6.12.0-16-generic 119s Found initrd image: /boot/initrd.img-6.12.0-16-generic 119s Found linux image: /boot/vmlinuz-6.11.0-8-generic 119s Found initrd image: /boot/initrd.img-6.11.0-8-generic 119s Warning: os-prober will not be executed to detect other bootable partitions. 119s Systems on them will not be added to the GRUB boot configuration. 119s Check GRUB_DISABLE_OS_PROBER documentation entry. 119s Adding boot menu entry for UEFI Firmware Settings ... 119s done 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 121s Solving dependencies... 121s The following packages will be REMOVED: 121s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 121s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 121s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 121s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 121s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 121s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 121s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 121s linux-tools-6.12.0-16-generic* 121s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 121s After this operation, 545 MB disk space will be freed. 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 121s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 121s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 121s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 121s Removing libpython3.12t64:amd64 (3.12.9-1) ... 121s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 121s Removing libnsl2:amd64 (1.3.0-3build3) ... 121s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 121s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 122s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 124s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 125s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 126s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 127s /etc/kernel/postrm.d/initramfs-tools: 127s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 127s /etc/kernel/postrm.d/zz-update-grub: 127s Sourcing file `/etc/default/grub' 127s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 127s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 127s Generating grub configuration file ... 127s Found linux image: /boot/vmlinuz-6.14.0-10-generic 127s Found initrd image: /boot/initrd.img-6.14.0-10-generic 127s Found linux image: /boot/vmlinuz-6.12.0-16-generic 127s Found initrd image: /boot/initrd.img-6.12.0-16-generic 127s Warning: os-prober will not be executed to detect other bootable partitions. 127s Systems on them will not be added to the GRUB boot configuration. 127s Check GRUB_DISABLE_OS_PROBER documentation entry. 127s Adding boot menu entry for UEFI Firmware Settings ... 127s done 127s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 127s W: Removing the running kernel 127s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 127s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 127s /etc/kernel/postrm.d/initramfs-tools: 127s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 128s /etc/kernel/postrm.d/zz-update-grub: 128s Sourcing file `/etc/default/grub' 128s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 128s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 128s Generating grub configuration file ... 128s Found linux image: /boot/vmlinuz-6.14.0-10-generic 128s Found initrd image: /boot/initrd.img-6.14.0-10-generic 128s Warning: os-prober will not be executed to detect other bootable partitions. 128s Systems on them will not be added to the GRUB boot configuration. 128s Check GRUB_DISABLE_OS_PROBER documentation entry. 128s Adding boot menu entry for UEFI Firmware Settings ... 128s done 128s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 128s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 130s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 130s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 130s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 130s Processing triggers for libc-bin (2.41-1ubuntu1) ... 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 130s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 130s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 130s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 130s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 130s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 130s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 130s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 130s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 130s autopkgtest [22:00:30]: upgrading testbed (apt dist-upgrade and autopurge) 130s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 131s Starting 2 pkgProblemResolver with broken count: 0 131s Done 132s Entering ResolveByKeep 132s 132s Calculating upgrade... 132s The following packages will be upgraded: 132s libc-bin libc-dev-bin libc6 libc6-dev locales 132s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s Need to get 10.5 MB of archives. 132s After this operation, 1024 B of additional disk space will be used. 132s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 132s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 132s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 132s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 132s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 133s Preconfiguring packages ... 133s Fetched 10.5 MB in 0s (25.6 MB/s) 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 133s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 133s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 133s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 133s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 133s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 133s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 133s Setting up libc6:amd64 (2.41-1ubuntu2) ... 134s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 134s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 134s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 134s Setting up libc-bin (2.41-1ubuntu2) ... 134s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 134s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 134s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 134s Setting up locales (2.41-1ubuntu2) ... 135s Generating locales (this might take a while)... 136s en_US.UTF-8... done 136s Generation complete. 136s Setting up libc-dev-bin (2.41-1ubuntu2) ... 136s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 136s Processing triggers for man-db (2.13.0-1) ... 137s Processing triggers for systemd (257.3-1ubuntu3) ... 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 138s Starting pkgProblemResolver with broken count: 0 138s Starting 2 pkgProblemResolver with broken count: 0 138s Done 139s Solving dependencies... 139s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s autopkgtest [22:00:39]: rebooting testbed after setup commands that affected boot 142s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 154s autopkgtest [22:00:54]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 155s autopkgtest [22:00:55]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-ebseq 156s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-ebseq 2.4.0-2 (dsc) [2190 B] 156s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-ebseq 2.4.0-2 (tar) [1124 kB] 156s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-ebseq 2.4.0-2 (diff) [5148 B] 156s gpgv: Signature made Sat Jan 11 16:40:41 2025 UTC 156s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 156s gpgv: issuer "crusoe@debian.org" 156s gpgv: Can't check signature: No public key 156s dpkg-source: warning: cannot verify inline signature for ./r-bioc-ebseq_2.4.0-2.dsc: no acceptable signature found 156s autopkgtest [22:00:56]: testing package r-bioc-ebseq version 2.4.0-2 157s autopkgtest [22:00:57]: build not needed 158s autopkgtest [22:00:58]: test pkg-r-autopkgtest: preparing testbed 158s Reading package lists... 159s Building dependency tree... 159s Reading state information... 159s Starting pkgProblemResolver with broken count: 0 159s Starting 2 pkgProblemResolver with broken count: 0 159s Done 159s The following NEW packages will be installed: 159s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 159s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 159s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 159s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 159s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8 159s libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev libcairo2 159s libcc1-0 libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev 159s libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 159s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 159s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev 159s liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev 159s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 159s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 159s libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 libreadline-dev 159s libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0 159s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 159s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler pkg-r-autopkgtest 159s pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-biocgenerics r-bioc-ebseq 159s r-cran-bh r-cran-bitops r-cran-blockmodeling r-cran-brio r-cran-callr 159s r-cran-catools r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj 159s r-cran-digest r-cran-evaluate r-cran-fs r-cran-gdata r-cran-glue 159s r-cran-gplots r-cran-gtools r-cran-jsonlite r-cran-kernsmooth r-cran-lattice 159s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 159s r-cran-pkgbuild r-cran-pkgkitten r-cran-pkgload r-cran-praise 159s r-cran-processx r-cran-ps r-cran-r6 r-cran-rcpp r-cran-rcppeigen 159s r-cran-rlang r-cran-rprojroot r-cran-testthat r-cran-waldo r-cran-withr 159s unzip x11-common xdg-utils zip zlib1g-dev 160s 0 upgraded, 143 newly installed, 0 to remove and 0 not upgraded. 160s Need to get 179 MB of archives. 160s After this operation, 663 MB of additional disk space will be used. 160s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 160s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 160s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 160s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 160s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 160s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 160s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 160s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 160s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 160s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 160s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 160s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 160s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 160s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 160s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 160s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 160s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 160s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 160s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 160s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 160s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 160s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 161s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 161s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 161s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 161s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 161s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 161s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 161s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 161s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 161s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 161s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 161s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 161s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 161s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 161s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 161s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 161s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 161s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 161s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 161s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 161s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB] 161s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 161s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 161s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 161s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 161s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 161s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 161s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 161s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 161s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 161s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 161s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 161s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 161s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 161s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 161s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 161s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 161s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 161s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 161s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 161s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 161s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 161s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 161s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 161s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 161s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 161s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 161s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 161s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 161s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 161s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 161s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 161s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 161s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 161s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 161s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 161s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 161s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 161s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 161s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 161s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 161s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 161s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 161s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 161s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 161s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 161s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 161s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 161s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 161s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 161s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 161s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 161s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 161s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 161s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 161s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 161s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 161s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 161s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 161s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 161s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 161s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 161s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 161s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 161s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 162s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-blockmodeling amd64 1.1.5-1 [427 kB] 162s Get:108 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtools amd64 3.9.5-1 [340 kB] 162s Get:109 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB] 162s Get:110 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-catools amd64 1.18.3-1 [209 kB] 162s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 162s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernsmooth amd64 2.23-26-1 [94.5 kB] 162s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gdata all 3.0.1-1 [491 kB] 162s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gplots all 3.2.0-1 [484 kB] 162s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 162s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 162s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 162s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 162s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 162s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 162s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 162s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 162s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 162s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 162s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 162s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 162s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 162s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 162s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 162s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 162s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] 162s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 162s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 162s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 162s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 162s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 162s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-2 [150 kB] 162s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 162s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 162s Get:140 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 162s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 162s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 162s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ebseq amd64 2.4.0-2 [1292 kB] 162s Preconfiguring packages ... 162s Fetched 179 MB in 2s (80.6 MB/s) 162s Selecting previously unselected package libisl23:amd64. 163s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 163s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 163s Unpacking libisl23:amd64 (0.27-1) ... 163s Selecting previously unselected package libmpc3:amd64. 163s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 163s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 163s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 163s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 163s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 163s Selecting previously unselected package cpp-14. 163s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 163s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 163s Selecting previously unselected package cpp-x86-64-linux-gnu. 163s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 163s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 163s Selecting previously unselected package cpp. 163s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 163s Unpacking cpp (4:14.2.0-1ubuntu1) ... 163s Selecting previously unselected package libcc1-0:amd64. 163s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 163s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 163s Selecting previously unselected package libgomp1:amd64. 163s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 163s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 163s Selecting previously unselected package libitm1:amd64. 163s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 163s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 163s Selecting previously unselected package libasan8:amd64. 163s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 163s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 163s Selecting previously unselected package liblsan0:amd64. 163s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 163s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 163s Selecting previously unselected package libtsan2:amd64. 163s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 163s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 163s Selecting previously unselected package libubsan1:amd64. 163s Preparing to unpack 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previously unselected package libgfortran-14-dev:amd64. 165s Preparing to unpack .../033-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 165s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 165s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 165s Preparing to unpack .../034-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 165s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 165s Selecting previously unselected package gfortran-14. 165s Preparing to unpack .../035-gfortran-14_14.2.0-17ubuntu3_amd64.deb ... 165s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 165s Selecting previously unselected package gfortran-x86-64-linux-gnu. 165s Preparing to unpack .../036-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 165s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 165s Selecting previously unselected package gfortran. 165s Preparing to unpack .../037-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 165s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 165s Selecting previously unselected package icu-devtools. 165s Preparing to unpack .../038-icu-devtools_76.1-1ubuntu2_amd64.deb ... 165s Unpacking icu-devtools (76.1-1ubuntu2) ... 165s Selecting previously unselected package libblas3:amd64. 165s Preparing to unpack .../039-libblas3_3.12.1-2_amd64.deb ... 165s Unpacking libblas3:amd64 (3.12.1-2) ... 165s Selecting previously unselected package libblas-dev:amd64. 165s Preparing to unpack .../040-libblas-dev_3.12.1-2_amd64.deb ... 165s Unpacking libblas-dev:amd64 (3.12.1-2) ... 165s Selecting previously unselected package libboost1.83-dev:amd64. 165s Preparing to unpack .../041-libboost1.83-dev_1.83.0-4.1ubuntu2_amd64.deb ... 165s Unpacking libboost1.83-dev:amd64 (1.83.0-4.1ubuntu2) ... 167s Selecting previously unselected package libboost-dev:amd64. 167s Preparing to unpack .../042-libboost-dev_1.83.0.2ubuntu1_amd64.deb ... 167s Unpacking libboost-dev:amd64 (1.83.0.2ubuntu1) ... 168s Selecting previously unselected package libbz2-dev:amd64. 168s Preparing to unpack .../043-libbz2-dev_1.0.8-6_amd64.deb ... 168s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 168s Selecting previously unselected package libpixman-1-0:amd64. 168s Preparing to unpack .../044-libpixman-1-0_0.44.0-3_amd64.deb ... 168s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 168s Selecting previously unselected package libxcb-render0:amd64. 168s Preparing to unpack .../045-libxcb-render0_1.17.0-2_amd64.deb ... 168s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 168s Selecting previously unselected package libxcb-shm0:amd64. 168s Preparing to unpack .../046-libxcb-shm0_1.17.0-2_amd64.deb ... 168s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 168s Selecting previously unselected package libxrender1:amd64. 168s Preparing to unpack .../047-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 168s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 168s Selecting previously unselected package libcairo2:amd64. 168s Preparing to unpack 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unpack .../064-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 169s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 169s Selecting previously unselected package libncurses-dev:amd64. 169s Preparing to unpack .../065-libncurses-dev_6.5+20250216-2_amd64.deb ... 169s Unpacking libncurses-dev:amd64 (6.5+20250216-2) ... 169s Selecting previously unselected package libthai-data. 169s Preparing to unpack .../066-libthai-data_0.1.29-2build1_all.deb ... 169s Unpacking libthai-data (0.1.29-2build1) ... 169s Selecting previously unselected package libthai0:amd64. 169s Preparing to unpack .../067-libthai0_0.1.29-2build1_amd64.deb ... 169s Unpacking libthai0:amd64 (0.1.29-2build1) ... 169s Selecting previously unselected package libpango-1.0-0:amd64. 169s Preparing to unpack .../068-libpango-1.0-0_1.56.2-1_amd64.deb ... 169s Unpacking libpango-1.0-0:amd64 (1.56.2-1) ... 169s Selecting previously unselected package libpangoft2-1.0-0:amd64. 169s Preparing to unpack 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libpcre2-32-0:amd64 (10.45-1) ... 169s Selecting previously unselected package libpcre2-posix3:amd64. 169s Preparing to unpack .../075-libpcre2-posix3_10.45-1_amd64.deb ... 169s Unpacking libpcre2-posix3:amd64 (10.45-1) ... 169s Selecting previously unselected package libpcre2-dev:amd64. 169s Preparing to unpack .../076-libpcre2-dev_10.45-1_amd64.deb ... 169s Unpacking libpcre2-dev:amd64 (10.45-1) ... 169s Selecting previously unselected package libpkgconf3:amd64. 169s Preparing to unpack .../077-libpkgconf3_1.8.1-4_amd64.deb ... 169s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 169s Selecting previously unselected package zlib1g-dev:amd64. 169s Preparing to unpack .../078-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 169s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 169s Selecting previously unselected package libpng-dev:amd64. 169s Preparing to unpack .../079-libpng-dev_1.6.47-1_amd64.deb ... 169s Unpacking libpng-dev:amd64 (1.6.47-1) ... 169s Selecting previously unselected package libreadline-dev:amd64. 169s Preparing to unpack .../080-libreadline-dev_8.2-6_amd64.deb ... 169s Unpacking libreadline-dev:amd64 (8.2-6) ... 169s Selecting previously unselected package libsharpyuv0:amd64. 169s Preparing to unpack .../081-libsharpyuv0_1.5.0-0.1_amd64.deb ... 169s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 169s Selecting previously unselected package libsm6:amd64. 169s Preparing to unpack .../082-libsm6_2%3a1.2.4-1_amd64.deb ... 169s Unpacking libsm6:amd64 (2:1.2.4-1) ... 169s Selecting previously unselected package libtcl8.6:amd64. 169s Preparing to unpack .../083-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 169s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 169s Selecting previously unselected package libjbig0:amd64. 169s Preparing to unpack .../084-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 169s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 169s Selecting previously unselected package libwebp7:amd64. 169s Preparing to unpack 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(1:1.2.1-1.2build1) ... 170s Selecting previously unselected package zip. 170s Preparing to unpack .../091-zip_3.0-14ubuntu2_amd64.deb ... 170s Unpacking zip (3.0-14ubuntu2) ... 170s Selecting previously unselected package unzip. 170s Preparing to unpack .../092-unzip_6.0-28ubuntu6_amd64.deb ... 170s Unpacking unzip (6.0-28ubuntu6) ... 170s Selecting previously unselected package xdg-utils. 170s Preparing to unpack .../093-xdg-utils_1.2.1-2ubuntu1_all.deb ... 170s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 170s Selecting previously unselected package r-base-core. 170s Preparing to unpack .../094-r-base-core_4.4.3-1_amd64.deb ... 170s Unpacking r-base-core (4.4.3-1) ... 170s Selecting previously unselected package r-cran-littler. 170s Preparing to unpack .../095-r-cran-littler_0.3.20-2_amd64.deb ... 170s Unpacking r-cran-littler (0.3.20-2) ... 170s Selecting previously unselected package littler. 170s Preparing to unpack .../096-littler_0.3.20-2_all.deb ... 170s Unpacking littler 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.../102-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 170s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 170s Selecting previously unselected package r-bioc-biocgenerics. 170s Preparing to unpack .../103-r-bioc-biocgenerics_0.52.0-2_all.deb ... 170s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 170s Selecting previously unselected package r-cran-lattice. 170s Preparing to unpack .../104-r-cran-lattice_0.22-6-1_amd64.deb ... 170s Unpacking r-cran-lattice (0.22-6-1) ... 170s Selecting previously unselected package r-cran-matrix. 170s Preparing to unpack .../105-r-cran-matrix_1.7-3-1_amd64.deb ... 170s Unpacking r-cran-matrix (1.7-3-1) ... 170s Selecting previously unselected package r-cran-blockmodeling. 170s Preparing to unpack .../106-r-cran-blockmodeling_1.1.5-1_amd64.deb ... 170s Unpacking r-cran-blockmodeling (1.1.5-1) ... 170s Selecting previously unselected package r-cran-gtools. 170s Preparing to unpack .../107-r-cran-gtools_3.9.5-1_amd64.deb ... 170s Unpacking r-cran-gtools 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up gfortran (4:14.2.0-1ubuntu1) ... 175s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 175s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 175s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 175s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 175s Setting up r-cran-pkgbuild (1.4.6-1) ... 175s Setting up r-cran-gplots (3.2.0-1) ... 175s Setting up r-cran-pkgload (1.4.0-1) ... 175s Setting up r-base-dev (4.4.3-1) ... 175s Setting up r-cran-testthat (3.2.3-1) ... 175s Setting up r-bioc-ebseq (2.4.0-2) ... 175s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 175s Processing triggers for libc-bin (2.41-1ubuntu2) ... 175s Processing triggers for man-db (2.13.0-1) ... 177s Processing triggers for install-info (7.1.1-1) ... 178s autopkgtest [22:01:18]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 178s autopkgtest [22:01:18]: test pkg-r-autopkgtest: [----------------------- 178s Test: Try to load the R library EBSeq 178s 178s R version 4.4.3 (2025-02-28) -- "Trophy Case" 178s Copyright (C) 2025 The R Foundation for Statistical Computing 178s Platform: x86_64-pc-linux-gnu 178s 178s R is free software and comes with ABSOLUTELY NO WARRANTY. 178s You are welcome to redistribute it under certain conditions. 178s Type 'license()' or 'licence()' for distribution details. 178s 178s R is a collaborative project with many contributors. 178s Type 'contributors()' for more information and 178s 'citation()' on how to cite R or R packages in publications. 178s 178s Type 'demo()' for some demos, 'help()' for on-line help, or 178s 'help.start()' for an HTML browser interface to help. 178s Type 'q()' to quit R. 178s 178s > library('EBSeq') 178s Loading required package: blockmodeling 179s To cite package 'blockmodeling' in publications please use package 179s citation and (at least) one of the articles: 179s 179s Žiberna, Aleš (2007). Generalized blockmodeling of valued networks. 179s Social Networks 29(1), 105-126. 179s 179s Žiberna, Aleš (2008). Direct and indirect approaches to blockmodeling 179s of valued networks in terms of regular equivalence. Journal of 179s Mathematical Sociology 32(1), 57–84. 179s 179s Žiberna, Aleš (2014). Blockmodeling of multilevel networks. Social 179s Networks 39, 46–61. https://doi.org/10.1016/j.socnet.2014.04.002. 179s 179s Žiberna, Aleš (2023). Generalized and Classical Blockmodeling of 179s Valued Networks, R package version 1.1.5. 179s Cugmas, Marjan (2023). Generalized and Classical Blockmodeling of 179s Valued Networks, R package version 1.1.5. 179s 179s To see these entries in BibTeX format, use 'format(, 179s bibtex=TRUE)', or 'toBibtex(.)'. 179s Loading required package: gplots 179s 179s Attaching package: ‘gplots’ 179s 179s The following object is masked from ‘package:stats’: 179s 179s lowess 179s 179s Loading required package: testthat 179s > 179s > 179s Other tests are currently unsupported! 179s They will be progressively added. 180s autopkgtest [22:01:20]: test pkg-r-autopkgtest: -----------------------] 180s autopkgtest [22:01:20]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 180s pkg-r-autopkgtest PASS 180s autopkgtest [22:01:20]: @@@@@@@@@@@@@@@@@@@@ summary 180s pkg-r-autopkgtest PASS 197s nova [W] Skipping flock for amd64 197s Creating nova instance adt-plucky-amd64-r-bioc-ebseq-20250315-215820-juju-7f2275-prod-proposed-migration-environment-2-6b8fc445-f10b-4062-bc6d-b2efacf91cdb from image adt/ubuntu-plucky-amd64-server-20250306.img (UUID 60d877d7-b74c-4f24-920d-f4570db0a338)... 197s nova [W] Timed out waiting for a1b754d3-c756-437f-8bb4-e075efabc861 to get deleted.