0s autopkgtest [12:15:19]: starting date and time: 2025-03-15 12:15:19+0000 0s autopkgtest [12:15:19]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [12:15:19]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.40oahm6c/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-dropletutils --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-20.secgroup --name adt-plucky-amd64-r-bioc-dropletutils-20250315-121519-juju-7f2275-prod-proposed-migration-environment-20-622f1d00-5c19-463a-866c-328257ba08f1 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 81s autopkgtest [12:16:40]: testbed dpkg architecture: amd64 82s autopkgtest [12:16:41]: testbed apt version: 2.9.31ubuntu1 82s autopkgtest [12:16:41]: @@@@@@@@@@@@@@@@@@@@ test bed setup 82s autopkgtest [12:16:41]: testbed release detected to be: None 83s autopkgtest [12:16:42]: updating testbed package index (apt update) 83s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 84s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 84s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 84s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 84s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [46.2 kB] 84s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 84s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [410 kB] 84s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [90.3 kB] 84s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [64.9 kB] 84s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1916 B] 84s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 84s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [181 kB] 84s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [364 kB] 84s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [17.0 kB] 84s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8452 B] 84s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [17.0 kB] 84s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [912 B] 85s Fetched 1345 kB in 1s (1103 kB/s) 85s Reading package lists... 86s Reading package lists... 86s Building dependency tree... 86s Reading state information... 86s Calculating upgrade... 87s Calculating upgrade... 87s The following package was automatically installed and is no longer required: 87s libnl-genl-3-200 87s Use 'sudo apt autoremove' to remove it. 87s The following NEW packages will be installed: 87s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 87s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 87s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 87s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 87s The following packages will be upgraded: 87s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 87s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 87s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 87s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 87s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 87s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 87s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 87s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 87s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 87s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 87s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 87s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 87s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 87s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 87s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 87s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 87s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 87s parted pci.ids pciutils python-apt-common python3 python3-apt python3-bcrypt 87s python3-cffi-backend python3-dbus python3-gi python3-jinja2 python3-lazr.uri 87s python3-markupsafe python3-minimal python3-newt python3-rpds-py 87s python3-systemd python3-yaml python3.13 python3.13-gdbm python3.13-minimal 87s rsync rsyslog strace systemd systemd-cryptsetup systemd-resolved 87s systemd-sysv systemd-timesyncd ubuntu-kernel-accessories ubuntu-minimal 87s ubuntu-standard udev whiptail xz-utils 87s 125 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 87s Need to get 829 MB of archives. 87s After this operation, 325 MB of additional disk space will be used. 87s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 87s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 87s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 88s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 90s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 91s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 91s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 92s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 92s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 92s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 92s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 92s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 92s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 92s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 92s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 92s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 93s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 93s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 93s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 93s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 93s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 94s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 95s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 95s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 95s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 96s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 96s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 96s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 96s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 96s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 96s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 96s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 96s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 97s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 97s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 97s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 97s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 97s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 98s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 98s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 98s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 99s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 99s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 99s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 99s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 100s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 101s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 102s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 102s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 102s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 102s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 102s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 102s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 102s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 102s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 102s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 103s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 103s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 103s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 103s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 103s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 103s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 104s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 104s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 104s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 104s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 104s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 104s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 104s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 104s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 104s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 104s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 105s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 105s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 105s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 105s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 105s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 105s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 105s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 105s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 105s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 105s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 106s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 106s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 106s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 106s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 106s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 106s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 107s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 107s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 107s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 107s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 107s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 107s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 107s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 107s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 108s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 108s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 108s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 108s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 108s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 109s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 109s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 109s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 110s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 115s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 115s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 115s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 115s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 700s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 700s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 700s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 700s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 700s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 700s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 700s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 701s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 744s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 760s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 901s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 901s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 901s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 901s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 901s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 901s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 916s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 920s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 920s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 925s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 927s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 927s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 927s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 927s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 927s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 927s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 927s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 927s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 928s Preconfiguring packages ... 928s Fetched 829 MB in 14min 0s (986 kB/s) 928s (Reading database ... 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.../23-parted_3.6-5_amd64.deb ... 937s Unpacking parted (3.6-5) over (3.6-4build1) ... 937s Preparing to unpack .../24-libparted2t64_3.6-5_amd64.deb ... 937s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 937s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 937s Unpacking libparted2t64:amd64 (3.6-5) over (3.6-4build1) ... 937s Preparing to unpack .../25-pci.ids_0.0~2025.03.09-1_all.deb ... 937s Unpacking pci.ids (0.0~2025.03.09-1) over (0.0~2025.02.12-1) ... 937s Preparing to unpack .../26-pciutils_1%3a3.13.0-2_amd64.deb ... 937s Unpacking pciutils (1:3.13.0-2) over (1:3.13.0-1) ... 937s Preparing to unpack .../27-libpci3_1%3a3.13.0-2_amd64.deb ... 937s Unpacking libpci3:amd64 (1:3.13.0-2) over (1:3.13.0-1) ... 937s Preparing to unpack .../28-strace_6.13+ds-1ubuntu1_amd64.deb ... 937s Unpacking strace 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(1.549) ... 947s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 947s Setting up pci.ids (0.0~2025.03.09-1) ... 947s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 947s Setting up apt-utils (2.9.33) ... 947s Setting up libdebuginfod-common (0.192-4) ... 948s Setting up exfatprogs (1.2.8-1) ... 948s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 948s Setting up bpftool (7.6.0+6.14.0-10.10) ... 948s Setting up libestr0:amd64 (0.1.11-2) ... 948s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 948s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 948s Setting up dosfstools (4.2-1.2) ... 948s Setting up rsyslog (8.2412.0-2ubuntu2) ... 948s info: The user `syslog' is already a member of `adm'. 949s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 949s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 949s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 949s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 949s Setting up systemd (257.3-1ubuntu3) ... 949s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 949s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 949s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 949s Setting up libparted2t64:amd64 (3.6-5) ... 949s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 949s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 949s Setting up linux-headers-generic (6.14.0-10.10) ... 949s Setting up libjemalloc2:amd64 (5.3.0-3) ... 949s Setting up locales (2.41-1ubuntu1) ... 949s Installing new version of config file /etc/locale.alias ... 950s Generating locales (this might take a while)... 951s en_US.UTF-8... done 951s Generation complete. 951s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 951s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 951s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 951s Installing new version of config file /etc/apparmor.d/fusermount3 ... 951s Installing new version of config file /etc/apparmor.d/lsusb ... 951s Installing new version of config file /etc/apparmor.d/openvpn ... 952s Reloading AppArmor profiles 954s Setting up libftdi1-2:amd64 (1.5-8build1) ... 954s Setting up libglib2.0-data (2.84.0-1) ... 954s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 954s Setting up libncurses6:amd64 (6.5+20250216-2) ... 954s Setting up strace (6.13+ds-1ubuntu1) ... 954s Setting up xz-utils (5.6.4-1) ... 954s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 954s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 954s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 954s Setting up udev (257.3-1ubuntu3) ... 955s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 956s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 956s Setting up libpci3:amd64 (1:3.13.0-2) ... 956s Setting up whiptail (0.52.24-4ubuntu2) ... 956s Setting up python-apt-common (2.9.9build1) ... 956s Setting up pnp.ids (0.393-3) ... 956s Setting up libnl-3-200:amd64 (3.7.0-1) ... 957s Setting up python3.13-minimal (3.13.2-2) ... 957s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 957s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 957s Setting up libc-dev-bin (2.41-1ubuntu1) ... 957s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 957s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 957s Setting up rsync (3.4.1+ds1-3) ... 958s rsync.service is a disabled or a static unit not running, not starting it. 958s Setting up python3.13-gdbm (3.13.2-2) ... 958s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 958s Setting up systemd-resolved (257.3-1ubuntu3) ... 958s Setting up initramfs-tools-bin (0.146ubuntu1) ... 958s Setting up ncurses-term (6.5+20250216-2) ... 958s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 958s Setting up libpython3.13:amd64 (3.13.2-2) ... 958s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 958s Setting up systemd-sysv (257.3-1ubuntu3) ... 958s Setting up linux-headers-virtual (6.14.0-10.10) ... 958s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 958s Setting up python3.13 (3.13.2-2) ... 959s Setting up htop (3.4.0-2) ... 959s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 961s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 961s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 961s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 961s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 961s Setting up parted (3.6-5) ... 961s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 961s Setting up python3 (3.13.2-2) ... 961s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 962s Setting up python3-markupsafe (2.1.5-1build4) ... 962s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 963s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 963s Setting up hwdata (0.393-3) ... 963s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 964s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 964s No schema files found: doing nothing. 964s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 964s Setting up linux-perf (6.14.0-10.10) ... 964s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 964s Setting up pciutils (1:3.13.0-2) ... 964s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 964s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 964s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 964s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 964s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 964s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 964s Setting up curl (8.12.1-3ubuntu1) ... 964s Setting up linux-image-virtual (6.14.0-10.10) ... 964s Setting up initramfs-tools-core (0.146ubuntu1) ... 964s Setting up linux-tools-common (6.14.0-10.10) ... 964s Setting up python3-systemd (235-1build6) ... 964s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 964s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 964s Setting up linux-image-generic (6.14.0-10.10) ... 964s Setting up python3-dbus (1.3.2-5build5) ... 964s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 964s Setting up initramfs-tools (0.146ubuntu1) ... 964s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 964s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 964s update-initramfs: deferring update (trigger activated) 964s Setting up linux-generic (6.14.0-10.10) ... 964s Setting up ubuntu-minimal (1.549) ... 964s Setting up python3-apt (2.9.9build1) ... 964s Setting up python3-bcrypt (4.2.0-2.1build1) ... 964s Setting up python3-yaml (6.0.2-1build2) ... 964s Setting up libfwupd3:amd64 (2.0.6-4) ... 964s Setting up python3-lazr.uri (1.0.6-6) ... 964s Setting up binutils (2.44-3ubuntu1) ... 964s Setting up ubuntu-standard (1.549) ... 964s Setting up cloud-init-base (25.1-0ubuntu3) ... 966s Setting up linux-virtual (6.14.0-10.10) ... 966s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 966s Setting up python3-gi (3.50.0-4build1) ... 966s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 966s Setting up fwupd (2.0.6-4) ... 966s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 967s Setting up cloud-init (25.1-0ubuntu3) ... 967s Processing triggers for man-db (2.13.0-1) ... 968s Processing triggers for dbus (1.16.2-1ubuntu1) ... 968s Processing triggers for shared-mime-info (2.4-5) ... 968s Warning: program compiled against libxml 212 using older 209 968s Processing triggers for libc-bin (2.41-1ubuntu1) ... 968s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 968s /etc/kernel/postinst.d/initramfs-tools: 968s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 968s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 977s /etc/kernel/postinst.d/zz-update-grub: 977s Sourcing file `/etc/default/grub' 977s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 977s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 977s Generating grub configuration file ... 977s Found linux image: /boot/vmlinuz-6.14.0-10-generic 977s Found initrd image: /boot/initrd.img-6.14.0-10-generic 978s Found linux image: /boot/vmlinuz-6.12.0-16-generic 978s Found initrd image: /boot/initrd.img-6.12.0-16-generic 978s Found linux image: /boot/vmlinuz-6.11.0-8-generic 978s Found initrd image: /boot/initrd.img-6.11.0-8-generic 978s Warning: os-prober will not be executed to detect other bootable partitions. 978s Systems on them will not be added to the GRUB boot configuration. 978s Check GRUB_DISABLE_OS_PROBER documentation entry. 978s Adding boot menu entry for UEFI Firmware Settings ... 978s done 978s Processing triggers for initramfs-tools (0.146ubuntu1) ... 978s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 978s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 988s Reading package lists... 988s Building dependency tree... 988s Reading state information... 988s Solving dependencies... 988s The following packages will be REMOVED: 988s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 988s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 988s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 988s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 988s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 988s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 988s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 988s linux-tools-6.12.0-16-generic* 989s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 989s After this operation, 545 MB disk space will be freed. 989s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 989s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 989s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 989s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 989s Removing libpython3.12t64:amd64 (3.12.9-1) ... 989s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 989s Removing libnsl2:amd64 (1.3.0-3build3) ... 989s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 989s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 989s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 991s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 992s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 993s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 994s /etc/kernel/postrm.d/initramfs-tools: 994s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 994s /etc/kernel/postrm.d/zz-update-grub: 994s Sourcing file `/etc/default/grub' 994s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 994s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 994s Generating grub configuration file ... 994s Found linux image: /boot/vmlinuz-6.14.0-10-generic 994s Found initrd image: /boot/initrd.img-6.14.0-10-generic 994s Found linux image: /boot/vmlinuz-6.12.0-16-generic 994s Found initrd image: /boot/initrd.img-6.12.0-16-generic 994s Warning: os-prober will not be executed to detect other bootable partitions. 994s Systems on them will not be added to the GRUB boot configuration. 994s Check GRUB_DISABLE_OS_PROBER documentation entry. 994s Adding boot menu entry for UEFI Firmware Settings ... 994s done 994s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 994s W: Removing the running kernel 994s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 994s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 994s /etc/kernel/postrm.d/initramfs-tools: 994s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 994s /etc/kernel/postrm.d/zz-update-grub: 994s Sourcing file `/etc/default/grub' 994s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 994s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 994s Generating grub configuration file ... 995s Found linux image: /boot/vmlinuz-6.14.0-10-generic 995s Found initrd image: /boot/initrd.img-6.14.0-10-generic 995s Warning: os-prober will not be executed to detect other bootable partitions. 995s Systems on them will not be added to the GRUB boot configuration. 995s Check GRUB_DISABLE_OS_PROBER documentation entry. 995s Adding boot menu entry for UEFI Firmware Settings ... 995s done 995s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 995s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 996s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 996s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 997s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 997s Processing triggers for libc-bin (2.41-1ubuntu1) ... 997s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 997s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 997s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 997s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 997s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 997s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 997s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 997s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 997s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 997s autopkgtest [12:31:56]: upgrading testbed (apt dist-upgrade and autopurge) 997s Reading package lists... 998s Building dependency tree... 998s Reading state information... 998s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 998s Starting 2 pkgProblemResolver with broken count: 0 998s Done 999s Entering ResolveByKeep 999s 999s Calculating upgrade... 999s The following packages will be upgraded: 999s libc-bin libc-dev-bin libc6 libc6-dev locales 1000s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1000s Need to get 10.5 MB of archives. 1000s After this operation, 1024 B of additional disk space will be used. 1000s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 1002s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 1002s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 1006s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 1007s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 1012s Preconfiguring packages ... 1012s Fetched 10.5 MB in 12s (853 kB/s) 1012s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 1012s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 1012s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1012s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 1012s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1012s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 1012s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1013s Setting up libc6:amd64 (2.41-1ubuntu2) ... 1013s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 1013s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 1013s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1013s Setting up libc-bin (2.41-1ubuntu2) ... 1013s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 1013s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 1013s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1013s Setting up locales (2.41-1ubuntu2) ... 1014s Generating locales (this might take a while)... 1015s en_US.UTF-8... done 1015s Generation complete. 1015s Setting up libc-dev-bin (2.41-1ubuntu2) ... 1015s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 1015s Processing triggers for man-db (2.13.0-1) ... 1015s Processing triggers for systemd (257.3-1ubuntu3) ... 1016s Reading package lists... 1017s Building dependency tree... 1017s Reading state information... 1017s Starting pkgProblemResolver with broken count: 0 1017s Starting 2 pkgProblemResolver with broken count: 0 1017s Done 1017s Solving dependencies... 1017s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1018s autopkgtest [12:32:17]: rebooting testbed after setup commands that affected boot 1041s autopkgtest [12:32:40]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 1044s autopkgtest [12:32:43]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-dropletutils 1046s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-dropletutils 1.26.0+ds-2build1 (dsc) [2607 B] 1046s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-dropletutils 1.26.0+ds-2build1 (tar) [85.5 kB] 1046s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-dropletutils 1.26.0+ds-2build1 (diff) [3908 B] 1046s gpgv: Signature made Tue Jan 28 12:35:24 2025 UTC 1046s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 1046s gpgv: Can't check signature: No public key 1046s dpkg-source: warning: cannot verify inline signature for ./r-bioc-dropletutils_1.26.0+ds-2build1.dsc: no acceptable signature found 1046s autopkgtest [12:32:45]: testing package r-bioc-dropletutils version 1.26.0+ds-2build1 1047s autopkgtest [12:32:46]: build not needed 1052s autopkgtest [12:32:51]: test pkg-r-autopkgtest: preparing testbed 1052s Reading package lists... 1052s Building dependency tree... 1052s Reading state information... 1053s Starting pkgProblemResolver with broken count: 0 1053s Starting 2 pkgProblemResolver with broken count: 0 1053s Done 1053s The following NEW packages will be installed: 1053s build-essential comerr-dev cpp cpp-14 cpp-14-x86-64-linux-gnu 1053s cpp-x86-64-linux-gnu dctrl-tools fontconfig fontconfig-config 1053s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 1053s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-14 1053s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 1053s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 1053s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu hdf5-helpers 1053s icu-devtools javascript-common krb5-multidev libaec-dev libaec0 libasan8 1053s libbibtex-parser-perl libblas-dev libblas3 libblosc1 libboost-dev 1053s libboost1.83-dev libbrotli-dev libbz2-dev libcairo2 libcc1-0 1053s libcurl4-openssl-dev libdatrie1 libdeflate-dev libdeflate0 libevent-2.1-7t64 1053s libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 libgmp-dev 1053s libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev 1053s libgomp1 libgraphite2-3 libgssrpc4t64 libharfbuzz0b libhdf5-310 1053s libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 1053s libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libhnswlib-dev libhwasan0 libice6 1053s libicu-dev libidn2-dev libio-string-perl libisl23 libitm1 libjbig0 1053s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 1053s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 1053s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 1053s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 1053s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 1053s libjs-twitter-bootstrap-datepicker libkadm5clnt-mit12 libkadm5srv-mit12 1053s libkdb5-10t64 libkpathsea6 libkrb5-dev liblapack-dev liblapack3 1053s liblatex-tounicode-perl libldap-dev liblerc4 liblsan0 liblua5.4-0 1053s liblzma-dev libmpc3 libmpfi0 libncurses-dev libnghttp2-dev libp11-kit-dev 1053s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 1053s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 1053s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl-dev libptexenc1 1053s libquadmath0 libreadline-dev librtmp-dev libsharpyuv0 libsm6 libsnappy1v5 1053s libssh2-1-dev libssl-dev libstdc++-14-dev libsynctex2 libsz2 libtasn1-6-dev 1053s libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 1053s libtirpc-dev libtk8.6 libtsan2 libubsan1 libunbound8 libwebp7 libxaw7 1053s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 1053s libxss1 libxt6t64 libzstd-dev libzzip-0-13t64 littler nettle-dev 1053s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 1053s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 1053s r-bioc-assorthead r-bioc-beachmat r-bioc-biobase r-bioc-biocgenerics 1053s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-delayedarray 1053s r-bioc-delayedmatrixstats r-bioc-dropletutils r-bioc-edger 1053s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges 1053s r-bioc-hdf5array r-bioc-iranges r-bioc-limma r-bioc-matrixgenerics 1053s r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays 1053s r-bioc-s4vectors r-bioc-scuttle r-bioc-singlecellexperiment 1053s r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-summarizedexperiment 1053s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass 1053s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bookdown r-cran-brio 1053s r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-codetools 1053s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-desc 1053s r-cran-diffobj r-cran-digest r-cran-dqrng r-cran-evaluate r-cran-fastmap 1053s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 1053s r-cran-futile.options r-cran-glue r-cran-highr r-cran-htmltools 1053s r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr 1053s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 1053s r-cran-locfit r-cran-magrittr r-cran-matrix r-cran-matrixstats 1053s r-cran-memoise r-cran-mime r-cran-openssl r-cran-pkgbuild r-cran-pkgkitten 1053s r-cran-pkgload r-cran-praise r-cran-processx r-cran-promises r-cran-ps 1053s r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs 1053s r-cran-rcpp r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-sass 1053s r-cran-shiny r-cran-sitmo r-cran-snow r-cran-sourcetools r-cran-statmod 1053s r-cran-sys r-cran-testthat r-cran-tinytex r-cran-waldo r-cran-withr 1053s r-cran-xfun r-cran-xtable r-cran-yaml t1utils tex-common texlive-base 1053s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 1053s xdg-utils zip zlib1g-dev 1053s 0 upgraded, 301 newly installed, 0 to remove and 0 not upgraded. 1053s Need to get 420 MB of archives. 1053s After this operation, 1369 MB of additional disk space will be used. 1053s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 1054s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 1054s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 1067s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 1067s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 1067s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 1067s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 1067s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 1067s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 1067s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 1070s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 1072s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 1075s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 1076s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 1078s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 1078s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 1081s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 1107s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 1107s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 1107s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 1107s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 1110s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 1124s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 1124s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 1124s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 1124s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 1124s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 1124s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 1125s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 1126s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 1126s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 1126s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 1126s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 1127s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 1127s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 1132s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 1134s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 1136s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 1137s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 1151s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 1151s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 1151s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 1151s Get:43 http://ftpmaster.internal/ubuntu plucky/universe amd64 hdf5-helpers amd64 1.14.5+repack-3 [17.0 kB] 1151s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 1151s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 1151s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 comerr-dev amd64 2.1-1.47.2-1ubuntu1 [44.9 kB] 1151s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libgssrpc4t64 amd64 1.21.3-4ubuntu2 [58.1 kB] 1151s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libkadm5clnt-mit12 amd64 1.21.3-4ubuntu2 [41.3 kB] 1151s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libkdb5-10t64 amd64 1.21.3-4ubuntu2 [42.0 kB] 1151s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libkadm5srv-mit12 amd64 1.21.3-4ubuntu2 [55.5 kB] 1151s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 krb5-multidev amd64 1.21.3-4ubuntu2 [125 kB] 1151s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 1151s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 1151s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 1151s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 1151s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 1152s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 1152s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB] 1152s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB] 1152s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB] 1165s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 1165s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli-dev amd64 1.1.0-2build4 [381 kB] 1165s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 1165s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 1166s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 1166s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 1166s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 1166s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 1167s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libidn2-dev amd64 2.3.7-2build2 [120 kB] 1167s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libkrb5-dev amd64 1.21.3-4ubuntu2 [11.9 kB] 1167s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libldap-dev amd64 2.6.9+dfsg-1~exp2ubuntu1 [335 kB] 1167s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 1167s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 1167s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 1167s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnghttp2-dev amd64 1.64.0-1 [123 kB] 1167s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libpsl-dev amd64 0.21.2-1.1build1 [76.4 kB] 1167s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3ubuntu1 [10.0 kB] 1167s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3ubuntu1 [341 kB] 1168s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10 [144 kB] 1168s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libunbound8 amd64 1.22.0-1ubuntu1 [519 kB] 1168s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-dane0t64 amd64 3.8.9-2ubuntu2 [24.4 kB] 1168s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2ubuntu2 [24.6 kB] 1168s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libp11-kit-dev amd64 0.25.5-2ubuntu3 [23.5 kB] 1168s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libtasn1-6-dev amd64 4.20.0-2 [98.1 kB] 1169s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 nettle-dev amd64 3.10.1-1 [1187 kB] 1170s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls28-dev amd64 3.8.9-2ubuntu2 [1118 kB] 1171s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 1172s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2build7 [66.7 kB] 1172s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libssl-dev amd64 3.4.1-1ubuntu1 [2873 kB] 1175s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libssh2-1-dev amd64 1.11.1-1 [292 kB] 1175s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [444 kB] 1176s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4-openssl-dev amd64 8.12.1-3ubuntu1 [522 kB] 1176s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 1176s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 1177s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 1177s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 1177s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 1177s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 1177s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 1179s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-cpp-310 amd64 1.14.5+repack-3 [129 kB] 1179s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-fortran-310 amd64 1.14.5+repack-3 [108 kB] 1179s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 1179s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-3 [32.4 kB] 1179s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-3 [11.7 kB] 1179s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 1180s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 1180s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 1180s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 1180s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 1180s Get:110 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec-dev amd64 1.1.3-1 [19.8 kB] 1180s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-dev amd64 1.14.5+repack-3 [3505 kB] 1184s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhnswlib-dev all 0.8.0-1build3 [24.4 kB] 1184s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 1184s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 1184s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 1197s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 1197s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 1198s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 1198s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 1198s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 1198s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 1199s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 1199s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 1199s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 1199s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 1199s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 1199s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 1200s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 1200s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 1200s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 1200s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-5build2 [67.0 kB] 1200s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 1203s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 1210s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 1210s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 1211s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 1211s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 1211s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 1211s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 1211s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.1-1 [255 kB] 1212s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.1-1 [52.6 kB] 1212s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.1-1 [29.1 kB] 1212s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 1212s Get:144 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 1212s Get:145 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 1212s Get:146 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 1212s Get:147 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 1212s Get:148 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 1213s Get:149 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 1214s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 1214s Get:151 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-5build2 [43.7 kB] 1214s Get:152 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 1214s Get:153 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 1214s Get:154 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 1214s Get:155 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-5build2 [62.5 kB] 1214s Get:156 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 1215s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 1216s Get:158 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-5build2 [145 kB] 1216s Get:159 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 1216s Get:160 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 1216s Get:161 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 1216s Get:162 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 1216s Get:163 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 1216s Get:164 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 1217s Get:165 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 1217s Get:166 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 1217s Get:167 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 1217s Get:168 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 1218s Get:169 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 1218s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 1218s Get:171 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 1218s Get:172 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 1218s Get:173 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 1218s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 1248s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 1248s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 1248s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 1249s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 1249s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 1249s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 1249s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 1279s Get:182 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 1279s Get:183 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 1279s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 1279s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 1279s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 1280s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-assorthead all 1.0.1+ds-2 [194 kB] 1280s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 1281s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 1286s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 1286s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 1287s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 1289s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 1291s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 1291s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 1291s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 1292s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 1292s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 1293s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1392 kB] 1294s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 1296s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 1297s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 1299s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-beachmat amd64 2.22.0+ds-2 [976 kB] 1300s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 1303s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 1303s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 1303s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 1303s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 1303s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 1303s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 1303s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 1303s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 1303s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 1305s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 1305s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 1305s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 1305s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 1307s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 1307s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 1308s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 1308s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 1308s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 1308s Get:223 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 1315s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 1316s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 1316s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 1316s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 1316s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 1318s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 1318s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 1318s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 1318s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 1318s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 1318s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 1318s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 1318s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 1320s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 1325s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 1326s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 1326s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 1326s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 1326s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 1327s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 1327s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 1327s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 1328s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 1328s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 1328s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 1329s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 1329s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 1332s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 1334s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 1335s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 1336s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB] 1336s Get:255 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 1336s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-5build2 [9799 kB] 1346s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB] 1370s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB] 1371s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 1432s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 1432s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 1433s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsematrixstats amd64 1.18.0+dfsg-2 [877 kB] 1433s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedmatrixstats all 1.28.1+ds-1 [502 kB] 1434s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 1434s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 1434s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 1434s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 1434s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 1435s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 1435s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 1444s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 1447s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 1448s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 1449s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-singlecellexperiment all 1.28.1+ds-2 [829 kB] 1450s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5lib amd64 1.28.0+dfsg-2build1 [97.4 kB] 1450s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5filters amd64 1.18.0+dfsg-2 [137 kB] 1450s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5 amd64 2.50.2+dfsg-1build1 [822 kB] 1451s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-hdf5array amd64 1.34.0-2build1 [8792 kB] 1458s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 1458s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB] 1460s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-locfit amd64 1.5-9.12-1 [552 kB] 1460s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-edger amd64 4.4.2+dfsg-1 [1120 kB] 1461s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 1461s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.oo all 1.27.0-1 [979 kB] 1462s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.utils all 2.13.0-1 [1423 kB] 1463s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sitmo amd64 2.0.2-1 [130 kB] 1463s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dqrng amd64 0.3.2+dfsg-1 [161 kB] 1463s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-scuttle amd64 1.16.0+dfsg-3 [459 kB] 1463s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-dropletutils amd64 1.26.0+ds-2build1 [430 kB] 1464s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 1464s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 1464s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 1465s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 1465s Get:294 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 1465s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 1466s Get:296 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 1466s Get:297 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] 1467s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 1467s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 1467s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-2 [150 kB] 1467s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 1469s Preconfiguring packages ... 1469s Fetched 420 MB in 6min 55s (1012 kB/s) 1469s Selecting previously unselected package libisl23:amd64. 1469s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 1469s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 1469s Unpacking libisl23:amd64 (0.27-1) ... 1469s Selecting previously unselected package libmpc3:amd64. 1469s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 1469s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 1469s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 1469s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 1469s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 1469s Selecting previously unselected package cpp-14. 1469s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 1469s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 1469s Selecting previously unselected package cpp-x86-64-linux-gnu. 1469s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 1469s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 1469s Selecting previously unselected package cpp. 1469s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 1469s Unpacking cpp (4:14.2.0-1ubuntu1) ... 1469s Selecting previously unselected package libcc1-0:amd64. 1469s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 1469s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 1469s Selecting previously unselected package libgomp1:amd64. 1469s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 1469s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 1470s Selecting previously unselected package libitm1:amd64. 1470s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 1470s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 1470s Selecting previously unselected package libasan8:amd64. 1470s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 1470s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 1470s Selecting previously unselected package liblsan0:amd64. 1470s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 1470s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 1470s Selecting previously unselected package libtsan2:amd64. 1470s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 1470s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 1470s Selecting previously unselected package libubsan1:amd64. 1470s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 1470s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 1470s Selecting previously unselected package libhwasan0:amd64. 1470s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 1470s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 1470s Selecting previously unselected package libquadmath0:amd64. 1470s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 1470s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 1470s Selecting previously unselected package libgcc-14-dev:amd64. 1470s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 1470s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 1470s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 1470s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 1470s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 1470s Selecting previously unselected package gcc-14. 1470s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 1470s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 1470s Selecting previously unselected package gcc-x86-64-linux-gnu. 1470s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 1470s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 1470s Selecting previously unselected package gcc. 1470s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 1470s Unpacking gcc (4:14.2.0-1ubuntu1) ... 1470s Selecting previously unselected package libstdc++-14-dev:amd64. 1470s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 1470s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 1471s Selecting previously unselected package g++-14-x86-64-linux-gnu. 1471s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 1471s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 1471s Selecting previously unselected package g++-14. 1471s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ... 1471s Unpacking g++-14 (14.2.0-17ubuntu3) ... 1471s Selecting previously unselected package g++-x86-64-linux-gnu. 1471s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 1471s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 1471s Selecting previously unselected package g++. 1471s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 1471s Unpacking g++ (4:14.2.0-1ubuntu1) ... 1471s Selecting previously unselected package build-essential. 1471s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 1471s Unpacking build-essential (12.10ubuntu1) ... 1471s Selecting previously unselected package dctrl-tools. 1471s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 1471s Unpacking dctrl-tools (2.24-3build3) ... 1471s Selecting previously unselected package fonts-dejavu-mono. 1471s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 1471s Unpacking fonts-dejavu-mono (2.37-8) ... 1471s Selecting previously unselected package fonts-dejavu-core. 1471s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 1471s Unpacking fonts-dejavu-core (2.37-8) ... 1471s Selecting previously unselected package fontconfig-config. 1471s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 1471s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 1471s Selecting previously unselected package libfontconfig1:amd64. 1471s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 1471s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 1471s Selecting previously unselected package fontconfig. 1471s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 1471s Unpacking fontconfig (2.15.0-2ubuntu1) ... 1471s Selecting previously unselected package fonts-font-awesome. 1471s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 1471s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 1471s Selecting previously unselected package fonts-glyphicons-halflings. 1471s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 1471s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 1471s Selecting previously unselected package fonts-lmodern. 1471s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ... 1471s Unpacking fonts-lmodern (2.005-1) ... 1471s Selecting previously unselected package fonts-mathjax. 1471s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 1471s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 1472s Selecting previously unselected package libgfortran5:amd64. 1472s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 1472s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 1472s Selecting previously unselected package libgfortran-14-dev:amd64. 1472s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 1472s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 1472s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 1472s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 1472s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 1472s Selecting previously unselected package gfortran-14. 1472s Preparing to unpack .../039-gfortran-14_14.2.0-17ubuntu3_amd64.deb ... 1472s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 1472s Selecting previously unselected package gfortran-x86-64-linux-gnu. 1472s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 1472s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 1472s Selecting previously unselected package gfortran. 1472s Preparing to unpack .../041-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 1472s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 1472s Selecting previously unselected package hdf5-helpers. 1472s Preparing to unpack .../042-hdf5-helpers_1.14.5+repack-3_amd64.deb ... 1472s Unpacking hdf5-helpers (1.14.5+repack-3) ... 1472s Selecting previously unselected package icu-devtools. 1472s Preparing to unpack .../043-icu-devtools_76.1-1ubuntu2_amd64.deb ... 1472s Unpacking icu-devtools (76.1-1ubuntu2) ... 1472s Selecting previously unselected package javascript-common. 1472s Preparing to unpack .../044-javascript-common_12_all.deb ... 1472s Unpacking javascript-common (12) ... 1472s Selecting previously unselected package comerr-dev:amd64. 1472s Preparing to unpack .../045-comerr-dev_2.1-1.47.2-1ubuntu1_amd64.deb ... 1472s Unpacking comerr-dev:amd64 (2.1-1.47.2-1ubuntu1) ... 1472s Selecting previously unselected package libgssrpc4t64:amd64. 1472s Preparing to unpack .../046-libgssrpc4t64_1.21.3-4ubuntu2_amd64.deb ... 1472s Unpacking libgssrpc4t64:amd64 (1.21.3-4ubuntu2) ... 1472s Selecting previously unselected package libkadm5clnt-mit12:amd64. 1472s Preparing to unpack .../047-libkadm5clnt-mit12_1.21.3-4ubuntu2_amd64.deb ... 1472s Unpacking libkadm5clnt-mit12:amd64 (1.21.3-4ubuntu2) ... 1472s Selecting previously unselected package libkdb5-10t64:amd64. 1472s Preparing to unpack .../048-libkdb5-10t64_1.21.3-4ubuntu2_amd64.deb ... 1472s Unpacking libkdb5-10t64:amd64 (1.21.3-4ubuntu2) ... 1472s Selecting previously unselected package libkadm5srv-mit12:amd64. 1472s Preparing to unpack .../049-libkadm5srv-mit12_1.21.3-4ubuntu2_amd64.deb ... 1472s Unpacking libkadm5srv-mit12:amd64 (1.21.3-4ubuntu2) ... 1472s Selecting previously unselected package krb5-multidev:amd64. 1472s Preparing to unpack .../050-krb5-multidev_1.21.3-4ubuntu2_amd64.deb ... 1472s Unpacking krb5-multidev:amd64 (1.21.3-4ubuntu2) ... 1472s Selecting previously unselected package libaec0:amd64. 1472s Preparing to unpack .../051-libaec0_1.1.3-1_amd64.deb ... 1472s Unpacking libaec0:amd64 (1.1.3-1) ... 1472s Selecting previously unselected package libio-string-perl. 1472s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 1472s Unpacking libio-string-perl (1.08-4) ... 1472s Selecting previously unselected package liblatex-tounicode-perl. 1472s Preparing to unpack .../053-liblatex-tounicode-perl_0.55-1_all.deb ... 1472s Unpacking liblatex-tounicode-perl (0.55-1) ... 1472s Selecting previously unselected package libbibtex-parser-perl. 1472s Preparing to unpack .../054-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 1472s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 1472s Selecting previously unselected package libblas3:amd64. 1472s Preparing to unpack .../055-libblas3_3.12.1-2_amd64.deb ... 1472s Unpacking libblas3:amd64 (3.12.1-2) ... 1472s Selecting previously unselected package libblas-dev:amd64. 1472s Preparing to unpack .../056-libblas-dev_3.12.1-2_amd64.deb ... 1472s Unpacking libblas-dev:amd64 (3.12.1-2) ... 1472s Selecting previously unselected package libsnappy1v5:amd64. 1472s Preparing to unpack .../057-libsnappy1v5_1.2.1-1_amd64.deb ... 1472s Unpacking libsnappy1v5:amd64 (1.2.1-1) ... 1472s Selecting previously unselected package libblosc1:amd64. 1472s Preparing to unpack .../058-libblosc1_1.21.5+ds-1build1_amd64.deb ... 1472s Unpacking libblosc1:amd64 (1.21.5+ds-1build1) ... 1472s Selecting previously unselected package libboost1.83-dev:amd64. 1472s Preparing to unpack .../059-libboost1.83-dev_1.83.0-4.1ubuntu2_amd64.deb ... 1472s Unpacking libboost1.83-dev:amd64 (1.83.0-4.1ubuntu2) ... 1475s Selecting previously unselected package libboost-dev:amd64. 1475s Preparing to unpack .../060-libboost-dev_1.83.0.2ubuntu1_amd64.deb ... 1475s Unpacking libboost-dev:amd64 (1.83.0.2ubuntu1) ... 1475s Selecting previously unselected package libbrotli-dev:amd64. 1475s Preparing to unpack .../061-libbrotli-dev_1.1.0-2build4_amd64.deb ... 1475s Unpacking libbrotli-dev:amd64 (1.1.0-2build4) ... 1475s Selecting previously unselected package libbz2-dev:amd64. 1475s Preparing to unpack .../062-libbz2-dev_1.0.8-6_amd64.deb ... 1475s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 1475s Selecting previously unselected package libpixman-1-0:amd64. 1475s Preparing to unpack .../063-libpixman-1-0_0.44.0-3_amd64.deb ... 1475s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 1475s Selecting previously unselected package libxcb-render0:amd64. 1475s Preparing to unpack .../064-libxcb-render0_1.17.0-2_amd64.deb ... 1475s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 1475s Selecting previously unselected package libxcb-shm0:amd64. 1475s Preparing to unpack .../065-libxcb-shm0_1.17.0-2_amd64.deb ... 1475s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 1475s Selecting previously unselected package libxrender1:amd64. 1475s Preparing to unpack .../066-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 1475s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 1475s Selecting previously unselected package libcairo2:amd64. 1475s Preparing to unpack .../067-libcairo2_1.18.2-2_amd64.deb ... 1475s Unpacking libcairo2:amd64 (1.18.2-2) ... 1475s Selecting previously unselected package libidn2-dev:amd64. 1475s Preparing to unpack .../068-libidn2-dev_2.3.7-2build2_amd64.deb ... 1475s Unpacking libidn2-dev:amd64 (2.3.7-2build2) ... 1475s Selecting previously unselected package libkrb5-dev:amd64. 1475s Preparing to unpack .../069-libkrb5-dev_1.21.3-4ubuntu2_amd64.deb ... 1475s Unpacking libkrb5-dev:amd64 (1.21.3-4ubuntu2) ... 1475s Selecting previously unselected package libldap-dev:amd64. 1475s Preparing to unpack .../070-libldap-dev_2.6.9+dfsg-1~exp2ubuntu1_amd64.deb ... 1475s Unpacking libldap-dev:amd64 (2.6.9+dfsg-1~exp2ubuntu1) ... 1475s Selecting previously unselected package libpkgconf3:amd64. 1475s Preparing to unpack .../071-libpkgconf3_1.8.1-4_amd64.deb ... 1475s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 1475s Selecting previously unselected package pkgconf-bin. 1475s Preparing to unpack .../072-pkgconf-bin_1.8.1-4_amd64.deb ... 1475s Unpacking pkgconf-bin (1.8.1-4) ... 1475s Selecting previously unselected package pkgconf:amd64. 1475s Preparing to unpack .../073-pkgconf_1.8.1-4_amd64.deb ... 1475s Unpacking pkgconf:amd64 (1.8.1-4) ... 1475s Selecting previously unselected package libnghttp2-dev:amd64. 1475s Preparing to unpack .../074-libnghttp2-dev_1.64.0-1_amd64.deb ... 1475s Unpacking libnghttp2-dev:amd64 (1.64.0-1) ... 1475s Selecting previously unselected package libpsl-dev:amd64. 1475s Preparing to unpack .../075-libpsl-dev_0.21.2-1.1build1_amd64.deb ... 1475s Unpacking libpsl-dev:amd64 (0.21.2-1.1build1) ... 1475s Selecting previously unselected package libgmpxx4ldbl:amd64. 1475s Preparing to unpack .../076-libgmpxx4ldbl_2%3a6.3.0+dfsg-3ubuntu1_amd64.deb ... 1475s Unpacking libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3ubuntu1) ... 1475s Selecting previously unselected package libgmp-dev:amd64. 1475s Preparing to unpack .../077-libgmp-dev_2%3a6.3.0+dfsg-3ubuntu1_amd64.deb ... 1475s Unpacking libgmp-dev:amd64 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to unpack .../087-librtmp-dev_2.4+20151223.gitfa8646d.1-2build7_amd64.deb ... 1476s Unpacking librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2build7) ... 1476s Selecting previously unselected package libssl-dev:amd64. 1476s Preparing to unpack .../088-libssl-dev_3.4.1-1ubuntu1_amd64.deb ... 1476s Unpacking libssl-dev:amd64 (3.4.1-1ubuntu1) ... 1476s Selecting previously unselected package libssh2-1-dev:amd64. 1476s Preparing to unpack .../089-libssh2-1-dev_1.11.1-1_amd64.deb ... 1476s Unpacking libssh2-1-dev:amd64 (1.11.1-1) ... 1476s Selecting previously unselected package libzstd-dev:amd64. 1476s Preparing to unpack .../090-libzstd-dev_1.5.6+dfsg-2_amd64.deb ... 1476s Unpacking libzstd-dev:amd64 (1.5.6+dfsg-2) ... 1476s Selecting previously unselected package libcurl4-openssl-dev:amd64. 1476s Preparing to unpack .../091-libcurl4-openssl-dev_8.12.1-3ubuntu1_amd64.deb ... 1476s Unpacking libcurl4-openssl-dev:amd64 (8.12.1-3ubuntu1) ... 1476s Selecting previously unselected package libdatrie1:amd64. 1476s Preparing to unpack .../092-libdatrie1_0.2.13-3build1_amd64.deb ... 1476s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 1476s Selecting previously unselected package libdeflate0:amd64. 1476s Preparing to unpack .../093-libdeflate0_1.23-1_amd64.deb ... 1476s Unpacking libdeflate0:amd64 (1.23-1) ... 1476s Selecting previously unselected package libdeflate-dev:amd64. 1476s Preparing to unpack .../094-libdeflate-dev_1.23-1_amd64.deb ... 1476s Unpacking libdeflate-dev:amd64 (1.23-1) ... 1476s Selecting previously unselected package libgraphite2-3:amd64. 1476s Preparing to unpack .../095-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 1476s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 1476s Selecting previously unselected package libharfbuzz0b:amd64. 1476s Preparing to unpack .../096-libharfbuzz0b_10.2.0-1_amd64.deb ... 1476s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 1476s Selecting previously unselected package libsz2:amd64. 1476s Preparing to unpack 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unselected package libjpeg8-dev:amd64. 1477s Preparing to unpack .../107-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 1477s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 1477s Selecting previously unselected package libjpeg-dev:amd64. 1477s Preparing to unpack .../108-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 1477s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 1477s Selecting previously unselected package libaec-dev:amd64. 1477s Preparing to unpack .../109-libaec-dev_1.1.3-1_amd64.deb ... 1477s Unpacking libaec-dev:amd64 (1.1.3-1) ... 1477s Selecting previously unselected package libhdf5-dev. 1477s Preparing to unpack .../110-libhdf5-dev_1.14.5+repack-3_amd64.deb ... 1477s Unpacking libhdf5-dev (1.14.5+repack-3) ... 1477s Selecting previously unselected package libhnswlib-dev. 1477s Preparing to unpack .../111-libhnswlib-dev_0.8.0-1build3_all.deb ... 1477s Unpacking libhnswlib-dev (0.8.0-1build3) ... 1477s Selecting previously unselected package x11-common. 1477s Preparing to unpack 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libjs-bootstrap4 (4.6.1+dfsg1-4) ... 1477s Selecting previously unselected package libjs-d3. 1478s Preparing to unpack .../118-libjs-d3_3.5.17-4_all.deb ... 1478s Unpacking libjs-d3 (3.5.17-4) ... 1478s Selecting previously unselected package libjs-es5-shim. 1478s Preparing to unpack .../119-libjs-es5-shim_4.6.7-2_all.deb ... 1478s Unpacking libjs-es5-shim (4.6.7-2) ... 1478s Selecting previously unselected package libjs-highlight.js. 1478s Preparing to unpack .../120-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 1478s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 1478s Selecting previously unselected package libjs-jquery. 1478s Preparing to unpack .../121-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 1478s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 1478s Selecting previously unselected package libjs-jquery-datatables. 1478s Preparing to unpack .../122-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 1478s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 1478s 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unselected package liblerc4:amd64. 1478s Preparing to unpack .../133-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 1478s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 1478s Selecting previously unselected package liblua5.4-0:amd64. 1478s Preparing to unpack .../134-liblua5.4-0_5.4.7-1_amd64.deb ... 1478s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 1478s Selecting previously unselected package libmpfi0:amd64. 1478s Preparing to unpack .../135-libmpfi0_1.5.4+ds-4_amd64.deb ... 1478s Unpacking libmpfi0:amd64 (1.5.4+ds-4) ... 1478s Selecting previously unselected package libncurses-dev:amd64. 1478s Preparing to unpack .../136-libncurses-dev_6.5+20250216-2_amd64.deb ... 1478s Unpacking libncurses-dev:amd64 (6.5+20250216-2) ... 1478s Selecting previously unselected package libthai-data. 1478s Preparing to unpack .../137-libthai-data_0.1.29-2build1_all.deb ... 1478s Unpacking libthai-data (0.1.29-2build1) ... 1478s Selecting previously unselected package libthai0:amd64. 1478s Preparing to unpack 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libpng-dev:amd64 (1.6.47-1) ... 1479s Selecting previously unselected package libpotrace0:amd64. 1479s Preparing to unpack .../149-libpotrace0_1.16-2build1_amd64.deb ... 1479s Unpacking libpotrace0:amd64 (1.16-2build1) ... 1479s Selecting previously unselected package libptexenc1:amd64. 1479s Preparing to unpack .../150-libptexenc1_2024.20240313.70630+ds-5build2_amd64.deb ... 1479s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-5build2) ... 1479s Selecting previously unselected package libreadline-dev:amd64. 1479s Preparing to unpack .../151-libreadline-dev_8.2-6_amd64.deb ... 1479s Unpacking libreadline-dev:amd64 (8.2-6) ... 1479s Selecting previously unselected package libsharpyuv0:amd64. 1479s Preparing to unpack .../152-libsharpyuv0_1.5.0-0.1_amd64.deb ... 1479s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 1479s Selecting previously unselected package libsm6:amd64. 1479s Preparing to unpack .../153-libsm6_2%3a1.2.4-1_amd64.deb ... 1479s Unpacking libsm6:amd64 (2:1.2.4-1) ... 1479s Selecting previously unselected package libsynctex2:amd64. 1479s Preparing to unpack .../154-libsynctex2_2024.20240313.70630+ds-5build2_amd64.deb ... 1479s Unpacking libsynctex2:amd64 (2024.20240313.70630+ds-5build2) ... 1479s Selecting previously unselected package libtcl8.6:amd64. 1479s Preparing to unpack .../155-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 1479s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 1479s Selecting previously unselected package libteckit0:amd64. 1479s Preparing to unpack .../156-libteckit0_2.5.12+ds1-1_amd64.deb ... 1479s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 1479s Selecting previously unselected package libtexlua53-5:amd64. 1479s Preparing to unpack .../157-libtexlua53-5_2024.20240313.70630+ds-5build2_amd64.deb ... 1479s Unpacking libtexlua53-5:amd64 (2024.20240313.70630+ds-5build2) ... 1479s Selecting previously unselected package libjbig0:amd64. 1479s Preparing to unpack .../158-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 1479s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 1479s Selecting previously unselected package libwebp7:amd64. 1479s Preparing to unpack .../159-libwebp7_1.5.0-0.1_amd64.deb ... 1479s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 1479s Selecting previously unselected package libtiff6:amd64. 1479s Preparing to unpack .../160-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 1479s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 1479s Selecting previously unselected package libxft2:amd64. 1479s Preparing to unpack .../161-libxft2_2.3.6-1build1_amd64.deb ... 1479s Unpacking libxft2:amd64 (2.3.6-1build1) ... 1479s Selecting previously unselected package libxss1:amd64. 1479s Preparing to unpack .../162-libxss1_1%3a1.2.3-1build3_amd64.deb ... 1479s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 1479s Selecting previously unselected package libtk8.6:amd64. 1479s Preparing to unpack .../163-libtk8.6_8.6.16-1_amd64.deb ... 1479s Unpacking libtk8.6:amd64 (8.6.16-1) ... 1479s Selecting previously unselected package libxt6t64:amd64. 1479s Preparing to unpack .../164-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 1479s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 1479s Selecting previously unselected package libxmu6:amd64. 1480s Preparing to unpack .../165-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 1480s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 1480s Selecting previously unselected package libxpm4:amd64. 1480s Preparing to unpack .../166-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 1480s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 1480s Selecting previously unselected package libxaw7:amd64. 1480s Preparing to unpack .../167-libxaw7_2%3a1.0.16-1_amd64.deb ... 1480s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 1480s Selecting previously unselected package libxi6:amd64. 1480s Preparing to unpack .../168-libxi6_2%3a1.8.2-1_amd64.deb ... 1480s Unpacking libxi6:amd64 (2:1.8.2-1) ... 1480s Selecting previously unselected package libzzip-0-13t64:amd64. 1480s Preparing to unpack .../169-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 1480s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 1480s Selecting previously unselected package zip. 1480s Preparing to unpack .../170-zip_3.0-14ubuntu2_amd64.deb ... 1480s Unpacking zip (3.0-14ubuntu2) ... 1480s Selecting previously unselected package unzip. 1480s Preparing to unpack .../171-unzip_6.0-28ubuntu6_amd64.deb ... 1480s Unpacking unzip (6.0-28ubuntu6) ... 1480s Selecting previously unselected package xdg-utils. 1480s Preparing to unpack .../172-xdg-utils_1.2.1-2ubuntu1_all.deb ... 1480s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 1480s Selecting previously unselected package r-base-core. 1480s Preparing to unpack .../173-r-base-core_4.4.3-1_amd64.deb ... 1480s Unpacking r-base-core (4.4.3-1) ... 1480s Selecting previously unselected package r-cran-littler. 1480s Preparing to unpack .../174-r-cran-littler_0.3.20-2_amd64.deb ... 1480s Unpacking r-cran-littler (0.3.20-2) ... 1480s Selecting previously unselected package littler. 1480s Preparing to unpack .../175-littler_0.3.20-2_all.deb ... 1480s Unpacking littler (0.3.20-2) ... 1480s Selecting previously unselected package node-bootstrap-sass. 1480s Preparing to unpack .../176-node-bootstrap-sass_3.4.3-2_all.deb ... 1480s Unpacking node-bootstrap-sass (3.4.3-2) ... 1480s Selecting previously unselected package node-html5shiv. 1480s Preparing to unpack .../177-node-html5shiv_3.7.3+dfsg-5_all.deb ... 1480s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 1480s Selecting previously unselected package node-normalize.css. 1480s Preparing to unpack .../178-node-normalize.css_8.0.1-5_all.deb ... 1480s Unpacking node-normalize.css (8.0.1-5) ... 1480s Selecting previously unselected package pandoc-data. 1480s Preparing to unpack .../179-pandoc-data_3.1.11.1-3build1_all.deb ... 1480s Unpacking pandoc-data (3.1.11.1-3build1) ... 1480s Selecting previously unselected package pandoc. 1480s Preparing to unpack .../180-pandoc_3.1.11.1+ds-2_amd64.deb ... 1480s Unpacking pandoc (3.1.11.1+ds-2) ... 1481s Selecting previously unselected package liblzma-dev:amd64. 1481s Preparing to unpack .../181-liblzma-dev_5.6.4-1_amd64.deb ... 1481s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 1481s Selecting previously unselected package libtirpc-dev:amd64. 1481s Preparing to unpack .../182-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 1481s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 1481s Selecting previously unselected package r-base-dev. 1481s Preparing to unpack .../183-r-base-dev_4.4.3-1_all.deb ... 1481s Unpacking r-base-dev (4.4.3-1) ... 1481s Selecting previously unselected package pkg-r-autopkgtest. 1481s Preparing to unpack .../184-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 1481s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 1481s Selecting previously unselected package r-bioc-biocgenerics. 1481s Preparing to unpack .../185-r-bioc-biocgenerics_0.52.0-2_all.deb ... 1481s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 1481s Selecting previously unselected package r-bioc-assorthead. 1481s Preparing to unpack .../186-r-bioc-assorthead_1.0.1+ds-2_all.deb ... 1481s Unpacking r-bioc-assorthead (1.0.1+ds-2) ... 1481s Selecting previously unselected package r-cran-lattice. 1481s Preparing to unpack .../187-r-cran-lattice_0.22-6-1_amd64.deb ... 1481s Unpacking r-cran-lattice (0.22-6-1) ... 1481s Selecting previously unselected package r-cran-matrix. 1481s Preparing to unpack .../188-r-cran-matrix_1.7-3-1_amd64.deb ... 1481s Unpacking r-cran-matrix (1.7-3-1) ... 1481s Selecting previously unselected package r-cran-matrixstats. 1481s Preparing to unpack .../189-r-cran-matrixstats_1.5.0-1_amd64.deb ... 1481s Unpacking r-cran-matrixstats (1.5.0-1) ... 1481s Selecting previously unselected package r-bioc-matrixgenerics. 1481s Preparing to unpack .../190-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 1481s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 1481s Selecting previously unselected package r-bioc-s4vectors. 1481s Preparing to unpack .../191-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 1481s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 1481s Selecting previously unselected package r-bioc-iranges. 1481s Preparing to unpack .../192-r-bioc-iranges_2.40.1-2_amd64.deb ... 1481s Unpacking r-bioc-iranges (2.40.1-2) ... 1482s Selecting previously unselected package r-cran-abind. 1482s Preparing to unpack .../193-r-cran-abind_1.4-8-1_all.deb ... 1482s Unpacking r-cran-abind (1.4-8-1) ... 1482s Selecting previously unselected package r-cran-crayon. 1482s Preparing to unpack .../194-r-cran-crayon_1.5.3-1_all.deb ... 1482s Unpacking r-cran-crayon (1.5.3-1) ... 1482s Selecting previously unselected package r-bioc-s4arrays. 1482s Preparing to unpack .../195-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 1482s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 1482s Selecting previously unselected package r-bioc-zlibbioc. 1482s Preparing to unpack .../196-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 1482s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 1482s Selecting previously unselected package r-bioc-xvector. 1482s Preparing to unpack .../197-r-bioc-xvector_0.46.0-2_amd64.deb ... 1482s Unpacking r-bioc-xvector (0.46.0-2) ... 1482s Selecting previously unselected package r-bioc-sparsearray. 1482s Preparing to unpack .../198-r-bioc-sparsearray_1.6.2+dfsg-1_amd64.deb ... 1482s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 1482s Selecting previously unselected package r-bioc-delayedarray. 1482s Preparing to unpack .../199-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 1482s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 1482s Selecting previously unselected package r-cran-pkgkitten. 1482s Preparing to unpack .../200-r-cran-pkgkitten_0.2.4-1_all.deb ... 1482s Unpacking r-cran-pkgkitten (0.2.4-1) ... 1482s Selecting previously unselected package r-cran-rcpp. 1482s Preparing to unpack .../201-r-cran-rcpp_1.0.14-1_amd64.deb ... 1482s Unpacking r-cran-rcpp (1.0.14-1) ... 1482s Selecting previously unselected package r-bioc-beachmat. 1482s Preparing to unpack .../202-r-bioc-beachmat_2.22.0+ds-2_amd64.deb ... 1482s Unpacking r-bioc-beachmat (2.22.0+ds-2) ... 1482s Selecting previously unselected package r-bioc-biobase. 1482s Preparing to unpack .../203-r-bioc-biobase_2.66.0-2_amd64.deb ... 1482s Unpacking r-bioc-biobase (2.66.0-2) ... 1482s Selecting previously unselected package r-cran-formatr. 1482s Preparing to unpack .../204-r-cran-formatr_1.14-2_all.deb ... 1482s Unpacking r-cran-formatr (1.14-2) ... 1482s Selecting previously unselected package r-cran-lambda.r. 1482s Preparing to unpack .../205-r-cran-lambda.r_1.2.4-2build1_all.deb ... 1482s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 1482s Selecting previously unselected package r-cran-futile.options. 1482s Preparing to unpack .../206-r-cran-futile.options_1.0.1-3build1_all.deb ... 1482s Unpacking r-cran-futile.options (1.0.1-3build1) ... 1482s Selecting previously unselected package r-cran-futile.logger. 1482s Preparing to unpack .../207-r-cran-futile.logger_1.4.3-4build1_all.deb ... 1482s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 1482s Selecting previously unselected package r-cran-snow. 1482s Preparing to unpack .../208-r-cran-snow_1%3a0.4.4-2_all.deb ... 1482s Unpacking r-cran-snow (1:0.4.4-2) ... 1482s Selecting previously unselected package r-cran-codetools. 1482s Preparing to unpack .../209-r-cran-codetools_0.2-20-1_all.deb ... 1482s Unpacking r-cran-codetools (0.2-20-1) ... 1482s Selecting previously unselected package r-cran-bh. 1482s Preparing to unpack .../210-r-cran-bh_1.84.0-1_all.deb ... 1482s Unpacking r-cran-bh (1.84.0-1) ... 1482s Selecting previously unselected package r-cran-cpp11. 1482s Preparing to unpack .../211-r-cran-cpp11_0.5.2-1_all.deb ... 1482s Unpacking r-cran-cpp11 (0.5.2-1) ... 1482s Selecting previously unselected package r-bioc-biocparallel. 1482s Preparing to unpack .../212-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 1482s Unpacking r-bioc-biocparallel (1.40.0-2) ... 1482s Selecting previously unselected package r-cran-base64enc. 1482s Preparing to unpack .../213-r-cran-base64enc_0.1-3-3_amd64.deb ... 1482s Unpacking r-cran-base64enc (0.1-3-3) ... 1482s Selecting previously unselected package r-cran-digest. 1483s Preparing to unpack .../214-r-cran-digest_0.6.37-1_amd64.deb ... 1483s Unpacking r-cran-digest (0.6.37-1) ... 1483s Selecting previously unselected package r-cran-fastmap. 1483s Preparing to unpack .../215-r-cran-fastmap_1.2.0-1_amd64.deb ... 1483s Unpacking r-cran-fastmap (1.2.0-1) ... 1483s Selecting previously unselected package r-cran-rlang. 1483s Preparing to unpack .../216-r-cran-rlang_1.1.5-1_amd64.deb ... 1483s Unpacking r-cran-rlang (1.1.5-1) ... 1483s Selecting previously unselected package r-cran-htmltools. 1483s Preparing to unpack .../217-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 1483s Unpacking r-cran-htmltools (0.5.8.1-1) ... 1483s Selecting previously unselected package r-cran-evaluate. 1483s Preparing to unpack .../218-r-cran-evaluate_1.0.3-1_all.deb ... 1483s Unpacking r-cran-evaluate (1.0.3-1) ... 1483s Selecting previously unselected package r-cran-xfun. 1483s Preparing to unpack .../219-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 1483s Unpacking r-cran-xfun (0.51+dfsg-1) ... 1483s Selecting previously unselected package r-cran-highr. 1483s Preparing to unpack .../220-r-cran-highr_0.11+dfsg-1_all.deb ... 1483s Unpacking r-cran-highr (0.11+dfsg-1) ... 1483s Selecting previously unselected package r-cran-yaml. 1483s Preparing to unpack .../221-r-cran-yaml_2.3.10-1_amd64.deb ... 1483s Unpacking r-cran-yaml (2.3.10-1) ... 1483s Selecting previously unselected package libjs-mathjax. 1483s Preparing to unpack .../222-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 1483s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 1484s Selecting previously unselected package r-cran-knitr. 1484s Preparing to unpack .../223-r-cran-knitr_1.49+dfsg-1_all.deb ... 1484s Unpacking r-cran-knitr (1.49+dfsg-1) ... 1484s Selecting previously unselected package r-cran-cachem. 1484s Preparing to unpack .../224-r-cran-cachem_1.1.0-1_amd64.deb ... 1484s Unpacking r-cran-cachem (1.1.0-1) ... 1484s Selecting previously unselected package r-cran-jquerylib. 1484s Preparing to unpack .../225-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 1484s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 1484s Selecting previously unselected package r-cran-jsonlite. 1484s Preparing to unpack .../226-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 1484s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 1484s Selecting previously unselected package r-cran-cli. 1484s Preparing to unpack .../227-r-cran-cli_3.6.4-1_amd64.deb ... 1484s Unpacking r-cran-cli (3.6.4-1) ... 1484s Selecting previously unselected package r-cran-glue. 1484s Preparing to unpack .../228-r-cran-glue_1.8.0-1_amd64.deb ... 1484s Unpacking r-cran-glue (1.8.0-1) ... 1484s Selecting previously unselected package r-cran-lifecycle. 1484s Preparing to unpack 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package r-cran-sass. 1484s Preparing to unpack .../235-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 1484s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 1484s Selecting previously unselected package r-cran-bslib. 1484s Preparing to unpack .../236-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 1484s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 1484s Selecting previously unselected package r-cran-fontawesome. 1484s Preparing to unpack .../237-r-cran-fontawesome_0.5.3-1_all.deb ... 1484s Unpacking r-cran-fontawesome (0.5.3-1) ... 1484s Selecting previously unselected package r-cran-tinytex. 1484s Preparing to unpack .../238-r-cran-tinytex_0.56-1_all.deb ... 1484s Unpacking r-cran-tinytex (0.56-1) ... 1484s Selecting previously unselected package libjs-modernizr. 1484s Preparing to unpack .../239-libjs-modernizr_3.13.0-0.1_all.deb ... 1484s Unpacking libjs-modernizr (3.13.0-0.1) ... 1484s Selecting previously unselected package r-cran-later. 1484s Preparing to unpack .../240-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 1484s Unpacking r-cran-later (1.4.1+dfsg-1) ... 1484s Selecting previously unselected package r-cran-magrittr. 1484s Preparing to unpack .../241-r-cran-magrittr_2.0.3-1_amd64.deb ... 1484s Unpacking r-cran-magrittr (2.0.3-1) ... 1484s Selecting previously unselected package r-cran-promises. 1484s Preparing to unpack .../242-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 1484s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 1485s Selecting previously unselected package r-cran-httpuv. 1485s Preparing to unpack .../243-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 1485s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 1485s Selecting previously unselected package r-cran-xtable. 1485s Preparing to unpack .../244-r-cran-xtable_1%3a1.8-4-2_all.deb ... 1485s Unpacking r-cran-xtable (1:1.8-4-2) ... 1485s Selecting previously unselected package r-cran-sourcetools. 1485s Preparing to unpack .../245-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 1485s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 1485s Selecting previously unselected package r-cran-withr. 1485s Preparing to unpack .../246-r-cran-withr_3.0.2+dfsg-1_all.deb ... 1485s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 1485s Selecting previously unselected package r-cran-commonmark. 1485s Preparing to unpack .../247-r-cran-commonmark_1.9.2-2_amd64.deb ... 1485s Unpacking r-cran-commonmark (1.9.2-2) ... 1485s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 1485s Preparing to unpack .../248-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 1485s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 1485s Selecting previously unselected package r-cran-shiny. 1485s Preparing to unpack .../249-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 1485s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 1485s Selecting previously unselected package r-cran-rmarkdown. 1485s Preparing to unpack .../250-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 1485s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 1485s Selecting previously unselected package r-cran-bookdown. 1485s Preparing to unpack .../251-r-cran-bookdown_0.42+dfsg-1_all.deb ... 1485s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 1485s Selecting previously unselected package r-cran-biocmanager. 1485s Preparing to unpack .../252-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 1485s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 1485s Selecting previously unselected package tex-common. 1485s Preparing to unpack .../253-tex-common_6.19_all.deb ... 1485s Unpacking tex-common (6.19) ... 1485s Selecting previously unselected package t1utils. 1485s Preparing to unpack .../254-t1utils_1.41-4build3_amd64.deb ... 1485s Unpacking t1utils (1.41-4build3) ... 1485s Selecting previously unselected package texlive-binaries. 1485s Preparing to unpack .../255-texlive-binaries_2024.20240313.70630+ds-5build2_amd64.deb ... 1485s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ... 1485s Selecting previously unselected package texlive-base. 1485s 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(14.2.0-17ubuntu3) ... 1493s Setting up libcurl4-openssl-dev:amd64 (8.12.1-3ubuntu1) ... 1493s Setting up r-base-core (4.4.3-1) ... 1493s Creating config file /etc/R/Renviron with new version 1493s Setting up r-cran-crayon (1.5.3-1) ... 1493s Setting up libhdf5-dev (1.14.5+repack-3) ... 1493s update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 1493s Setting up r-cran-sourcetools (0.1.7-1-1) ... 1493s Setting up r-cran-futile.options (1.0.1-3build1) ... 1493s Setting up r-cran-lattice (0.22-6-1) ... 1493s Setting up r-cran-ps (1.9.0-1) ... 1493s Setting up g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 1493s Setting up r-cran-formatr (1.14-2) ... 1493s Setting up r-cran-locfit (1.5-9.12-1) ... 1493s Setting up texlive-binaries (2024.20240313.70630+ds-5build2) ... 1493s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 1493s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 1493s Setting up r-cran-statmod (1.5.0-1) ... 1493s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 1493s Setting up r-cran-commonmark (1.9.2-2) ... 1493s Setting up g++-14 (14.2.0-17ubuntu3) ... 1493s Setting up r-cran-r6 (2.6.1-1) ... 1493s Setting up r-cran-pkgkitten (0.2.4-1) ... 1493s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 1493s Setting up texlive-base (2024.20250114-1) ... 1494s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 1494s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 1494s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 1494s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 1495s Setting up r-cran-magrittr (2.0.3-1) ... 1495s Setting up r-cran-rappdirs (0.3.3-1) ... 1495s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 1495s Setting up r-cran-littler (0.3.20-2) ... 1495s Setting up r-cran-bh (1.84.0-1) ... 1495s Setting up r-cran-fs (1.6.5+dfsg-1) ... 1495s Setting up r-cran-rcpp (1.0.14-1) ... 1495s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 1495s Setting up r-cran-codetools (0.2-20-1) ... 1495s Setting up r-cran-brio (1.1.5-1) ... 1495s Setting up r-cran-diffobj (0.3.5-1) ... 1495s Setting up r-bioc-biocgenerics (0.52.0-2) ... 1495s Setting up r-cran-rlang (1.1.5-1) ... 1495s Setting up r-cran-matrixstats (1.5.0-1) ... 1495s Setting up littler (0.3.20-2) ... 1495s Setting up r-bioc-matrixgenerics (1.18.1-1) ... 1495s Setting up r-cran-xfun (0.51+dfsg-1) ... 1495s Setting up r-cran-sys (3.4.3-1) ... 1495s Setting up r-cran-withr (3.0.2+dfsg-1) ... 1495s Setting up r-cran-processx (3.8.6-1) ... 1495s Setting up r-cran-mime (0.12-2) ... 1495s Setting up r-cran-praise (1.0.0-4build1) ... 1495s Setting up r-cran-base64enc (0.1-3-3) ... 1495s Setting up r-cran-abind (1.4-8-1) ... 1495s Setting up r-cran-digest (0.6.37-1) ... 1495s Setting up r-cran-yaml (2.3.10-1) ... 1495s Setting up r-cran-lambda.r (1.2.4-2build1) ... 1495s Setting up r-cran-evaluate (1.0.3-1) ... 1495s Setting up r-cran-highr (0.11+dfsg-1) ... 1495s Setting up r-bioc-rhdf5lib (1.28.0+dfsg-2build1) ... 1495s Setting up r-cran-snow (1:0.4.4-2) ... 1495s Setting up r-cran-glue (1.8.0-1) ... 1495s Setting up r-bioc-rhdf5filters (1.18.0+dfsg-2) ... 1495s Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 1495s Setting up r-cran-xtable (1:1.8-4-2) ... 1495s Setting up r-cran-cli (3.6.4-1) ... 1495s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 1495s Setting up r-bioc-biocversion (3.20.0-2) ... 1495s Setting up r-cran-rprojroot (2.0.4-2) ... 1495s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 1495s Setting up gcc (4:14.2.0-1ubuntu1) ... 1495s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 1495s Setting up r-cran-askpass (1.2.1-1) ... 1495s Setting up r-cran-fastmap (1.2.0-1) ... 1495s Setting up r-cran-r.methodss3 (1.8.2-1) ... 1495s Setting up r-bioc-biobase (2.66.0-2) ... 1495s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 1495s Setting up texlive-latex-base (2024.20250114-1) ... 1495s Setting up r-cran-cpp11 (0.5.2-1) ... 1495s Setting up r-cran-sitmo (2.0.2-1) ... 1495s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 1495s Setting up r-cran-futile.logger (1.4.3-4build1) ... 1495s Setting up r-cran-waldo (0.6.1-2) ... 1495s Setting up r-bioc-limma (3.62.2+dfsg-1) ... 1495s Setting up r-cran-later (1.4.1+dfsg-1) ... 1495s Setting up r-cran-matrix (1.7-3-1) ... 1495s Setting up r-cran-htmltools (0.5.8.1-1) ... 1495s Setting up r-cran-tinytex (0.56-1) ... 1495s Setting up r-cran-knitr (1.49+dfsg-1) ... 1495s Setting up g++ (4:14.2.0-1ubuntu1) ... 1495s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 1495s Setting up r-cran-cachem (1.1.0-1) ... 1495s Setting up r-cran-sass (0.4.9+dfsg-1) ... 1495s Setting up build-essential (12.10ubuntu1) ... 1495s Setting up r-bioc-iranges (2.40.1-2) ... 1495s Setting up r-cran-dqrng (0.3.2+dfsg-1) ... 1495s Setting up r-bioc-assorthead (1.0.1+ds-2) ... 1495s Setting up r-bioc-sparsematrixstats (1.18.0+dfsg-2) ... 1495s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 1495s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 1495s Setting up r-bioc-biocparallel (1.40.0-2) ... 1495s Setting up r-cran-callr (3.7.6-1) ... 1495s Setting up r-bioc-edger (4.4.2+dfsg-1) ... 1495s Setting up r-cran-desc (1.4.3-1) ... 1495s Setting up r-bioc-rhdf5 (2.50.2+dfsg-1build1) ... 1495s Setting up r-cran-fontawesome (0.5.3-1) ... 1495s Setting up r-cran-r.oo (1.27.0-1) ... 1495s Setting up gfortran (4:14.2.0-1ubuntu1) ... 1495s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 1495s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 1495s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 1495s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 1495s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 1495s Setting up texlive-bibtex-extra (2024.20250114-1) ... 1495s Setting up r-cran-httr (1.4.7+dfsg-1) ... 1495s Setting up r-cran-memoise (2.0.1-1) ... 1495s Setting up r-cran-promises (1.3.2+dfsg-1) ... 1495s Setting up r-bioc-xvector (0.46.0-2) ... 1495s Setting up r-cran-pkgbuild (1.4.6-1) ... 1495s Setting up r-cran-pkgload (1.4.0-1) ... 1495s Setting up r-cran-r.utils (2.13.0-1) ... 1495s Setting up r-base-dev (4.4.3-1) ... 1495s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 1495s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 1495s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 1495s Setting up r-cran-testthat (3.2.3-1) ... 1495s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 1495s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 1495s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 1495s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 1495s Setting up r-bioc-hdf5array (1.34.0-2build1) ... 1495s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 1495s Setting up r-bioc-delayedmatrixstats (1.28.1+ds-1) ... 1495s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 1495s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 1495s Setting up r-bioc-beachmat (2.22.0+ds-2) ... 1495s Setting up r-cran-bookdown (0.42+dfsg-1) ... 1495s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 1495s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 1495s Setting up r-bioc-singlecellexperiment (1.28.1+ds-2) ... 1495s Setting up r-bioc-scuttle (1.16.0+dfsg-3) ... 1495s Setting up r-bioc-dropletutils (1.26.0+ds-2build1) ... 1495s Processing triggers for install-info (7.1.1-1) ... 1495s Processing triggers for libc-bin (2.41-1ubuntu2) ... 1495s Processing triggers for man-db (2.13.0-1) ... 1497s Processing triggers for tex-common (6.19) ... 1497s Running updmap-sys. This may take some time... done. 1497s Running mktexlsr /var/lib/texmf ... done. 1497s Building format(s) --all. 1520s This may take some time... done. 1521s autopkgtest [12:40:40]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 1521s autopkgtest [12:40:40]: test pkg-r-autopkgtest: [----------------------- 1521s Test: Try to load the R library DropletUtils 1521s 1521s R version 4.4.3 (2025-02-28) -- "Trophy Case" 1521s Copyright (C) 2025 The R Foundation for Statistical Computing 1521s Platform: x86_64-pc-linux-gnu 1521s 1521s R is free software and comes with ABSOLUTELY NO WARRANTY. 1521s You are welcome to redistribute it under certain conditions. 1521s Type 'license()' or 'licence()' for distribution details. 1521s 1521s R is a collaborative project with many contributors. 1521s Type 'contributors()' for more information and 1521s 'citation()' on how to cite R or R packages in publications. 1521s 1521s Type 'demo()' for some demos, 'help()' for on-line help, or 1521s 'help.start()' for an HTML browser interface to help. 1521s Type 'q()' to quit R. 1521s 1521s > library('DropletUtils') 1521s Loading required package: SingleCellExperiment 1521s Loading required package: SummarizedExperiment 1521s Loading required package: MatrixGenerics 1521s Loading required package: matrixStats 1521s 1521s Attaching package: ‘MatrixGenerics’ 1521s 1521s The following objects are masked from ‘package:matrixStats’: 1521s 1521s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 1521s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 1521s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 1521s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 1521s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 1521s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 1521s colWeightedMeans, colWeightedMedians, colWeightedSds, 1521s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 1521s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 1521s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 1521s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 1521s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 1521s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 1521s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 1521s rowWeightedSds, rowWeightedVars 1521s 1521s Loading required package: GenomicRanges 1521s Loading required package: stats4 1521s Loading required package: BiocGenerics 1522s 1522s Attaching package: ‘BiocGenerics’ 1522s 1522s The following objects are masked from ‘package:stats’: 1522s 1522s IQR, mad, sd, var, xtabs 1522s 1522s The following objects are masked from ‘package:base’: 1522s 1522s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 1522s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 1522s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 1522s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 1522s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 1522s table, tapply, union, unique, unsplit, which.max, which.min 1522s 1522s Loading required package: S4Vectors 1522s 1522s Attaching package: ‘S4Vectors’ 1522s 1522s The following object is masked from ‘package:utils’: 1522s 1522s findMatches 1522s 1522s The following objects are masked from ‘package:base’: 1522s 1522s expand.grid, I, unname 1522s 1522s Loading required package: IRanges 1523s Loading required package: GenomeInfoDb 1523s Loading required package: Biobase 1523s Welcome to Bioconductor 1523s 1523s Vignettes contain introductory material; view with 1523s 'browseVignettes()'. To cite Bioconductor, see 1523s 'citation("Biobase")', and for packages 'citation("pkgname")'. 1523s 1523s 1523s Attaching package: ‘Biobase’ 1523s 1523s The following object is masked from ‘package:MatrixGenerics’: 1523s 1523s rowMedians 1523s 1523s The following objects are masked from ‘package:matrixStats’: 1523s 1523s anyMissing, rowMedians 1523s 1527s > 1527s > 1527s Other tests are currently unsupported! 1527s They will be progressively added. 1528s autopkgtest [12:40:47]: test pkg-r-autopkgtest: -----------------------] 1528s autopkgtest [12:40:47]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 1528s pkg-r-autopkgtest PASS 1528s autopkgtest [12:40:47]: @@@@@@@@@@@@@@@@@@@@ summary 1528s pkg-r-autopkgtest PASS 1534s nova [W] Skipping flock for amd64 1534s Creating nova instance adt-plucky-amd64-r-bioc-dropletutils-20250315-121519-juju-7f2275-prod-proposed-migration-environment-20-622f1d00-5c19-463a-866c-328257ba08f1 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 1534s nova [W] Timed out waiting for 4faa65fc-6761-49f3-8315-95845a8edc7b to get deleted.