0s autopkgtest [21:57:56]: starting date and time: 2025-03-15 21:57:56+0000 0s autopkgtest [21:57:56]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [21:57:56]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.dplo4n7n/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-deseq2 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-7.secgroup --name adt-plucky-amd64-r-bioc-deseq2-20250315-215756-juju-7f2275-prod-proposed-migration-environment-15-5a2c8923-5f62-470b-a8e0-b152fde8a3fa --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 52s autopkgtest [21:58:48]: testbed dpkg architecture: amd64 52s autopkgtest [21:58:48]: testbed apt version: 2.9.31ubuntu1 53s autopkgtest [21:58:49]: @@@@@@@@@@@@@@@@@@@@ test bed setup 53s autopkgtest [21:58:49]: testbed release detected to be: None 54s autopkgtest [21:58:50]: updating testbed package index (apt update) 54s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 54s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 54s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 54s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 55s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 55s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 55s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 55s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 55s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 55s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 55s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 55s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 55s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 55s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 55s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 55s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 55s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 55s Fetched 1265 kB in 1s (1417 kB/s) 56s Reading package lists... 57s + lsb_release --codename --short 57s + RELEASE=plucky 57s + cat 57s + [ plucky != trusty ] 57s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 57s Reading package lists... 57s Building dependency tree... 57s Reading state information... 57s Calculating upgrade... 57s Calculating upgrade... 58s The following package was automatically installed and is no longer required: 58s libnl-genl-3-200 58s Use 'sudo apt autoremove' to remove it. 58s The following NEW packages will be installed: 58s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 58s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 58s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 58s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 58s The following packages will be upgraded: 58s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 58s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 58s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 58s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 58s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 58s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 58s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 58s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 58s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 58s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 58s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 58s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 58s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 58s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 58s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 58s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 58s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 58s parted pci.ids pciutils pinentry-curses python-apt-common python3 58s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 58s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 58s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 58s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 58s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 58s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 58s xz-utils 58s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 58s Need to get 829 MB of archives. 58s After this operation, 325 MB of additional disk space will be used. 58s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 58s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 58s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 58s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 58s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 59s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 59s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 59s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 59s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 59s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 59s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 59s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 59s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 59s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 59s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 59s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 59s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 59s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 59s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 59s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 59s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 59s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 59s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 59s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 59s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 59s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 59s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 59s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 59s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 59s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 59s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 59s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 59s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 59s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 59s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 59s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 59s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 59s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 59s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 59s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 59s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 59s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 59s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 59s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 59s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 59s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 59s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 59s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 59s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 59s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 59s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 59s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 59s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 59s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 59s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 59s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 59s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 59s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 59s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 59s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 59s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 59s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 59s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 59s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 60s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 60s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 60s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 60s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 60s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 60s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 60s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 60s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 60s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 60s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 60s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 60s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 60s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 60s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 60s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 60s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 60s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 60s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 60s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 60s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 60s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 60s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 60s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 60s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 60s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 60s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 60s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 60s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 60s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 60s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 60s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 60s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 60s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 60s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 60s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 60s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 60s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 60s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 61s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 61s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 61s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 61s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 61s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 61s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 61s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 88s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 88s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 88s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 88s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 88s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 88s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 88s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 88s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 89s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 90s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 94s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 94s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 94s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 94s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 94s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 94s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 94s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 95s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 95s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 95s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 95s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 95s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 95s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 95s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 95s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 95s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 95s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 95s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 95s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 95s Preconfiguring packages ... 95s Fetched 829 MB in 37s (22.3 MB/s) 96s (Reading database ... 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(1.0.6-6) over (1.0.6-5) ... 117s Preparing to unpack .../79-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ... 118s Unpacking python3-rpds-py (0.21.0-2ubuntu2) over (0.21.0-2ubuntu1) ... 118s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 118s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 118s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 118s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 118s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 118s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 118s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 118s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 118s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 118s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 118s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 118s Setting up media-types (13.0.0) ... 118s Installing new version of config file /etc/mime.types ... 118s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 118s Setting up ubuntu-kernel-accessories (1.549) ... 118s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 118s Setting up pci.ids (0.0~2025.03.09-1) ... 118s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 118s Setting up apt-utils (2.9.33) ... 118s Setting up libdebuginfod-common (0.192-4) ... 118s Setting up exfatprogs (1.2.8-1) ... 118s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 118s Setting up bpftool (7.6.0+6.14.0-10.10) ... 118s Setting up libestr0:amd64 (0.1.11-2) ... 118s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 118s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 118s Setting up dosfstools (4.2-1.2) ... 118s Setting up rsyslog (8.2412.0-2ubuntu2) ... 118s info: The user `syslog' is already a member of `adm'. 119s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 119s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 119s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 119s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 119s Setting up systemd (257.3-1ubuntu3) ... 119s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 119s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 120s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 120s Setting up libparted2t64:amd64 (3.6-5) ... 120s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 120s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 120s Setting up linux-headers-generic (6.14.0-10.10) ... 120s Setting up libjemalloc2:amd64 (5.3.0-3) ... 120s Setting up locales (2.41-1ubuntu1) ... 120s Installing new version of config file /etc/locale.alias ... 121s Generating locales (this might take a while)... 122s en_US.UTF-8... done 122s Generation complete. 122s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 122s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 122s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 122s Installing new version of config file /etc/apparmor.d/fusermount3 ... 122s Installing new version of config file /etc/apparmor.d/lsusb ... 122s Installing new version of config file /etc/apparmor.d/openvpn ... 124s Reloading AppArmor profiles 125s Setting up libftdi1-2:amd64 (1.5-8build1) ... 125s Setting up libglib2.0-data (2.84.0-1) ... 125s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 125s Setting up libncurses6:amd64 (6.5+20250216-2) ... 125s Setting up strace (6.13+ds-1ubuntu1) ... 125s Setting up xz-utils (5.6.4-1) ... 125s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 126s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 126s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 126s Setting up udev (257.3-1ubuntu3) ... 127s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 129s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 129s Setting up libpci3:amd64 (1:3.13.0-2) ... 129s Setting up whiptail (0.52.24-4ubuntu2) ... 129s Setting up python-apt-common (2.9.9build1) ... 129s Setting up pnp.ids (0.393-3) ... 129s Setting up libnl-3-200:amd64 (3.7.0-1) ... 129s Setting up python3.13-minimal (3.13.2-2) ... 130s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 130s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 130s Setting up libc-dev-bin (2.41-1ubuntu1) ... 130s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 130s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 130s Setting up rsync (3.4.1+ds1-3) ... 130s rsync.service is a disabled or a static unit not running, not starting it. 130s Setting up python3.13-gdbm (3.13.2-2) ... 130s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 130s Setting up systemd-resolved (257.3-1ubuntu3) ... 131s Setting up initramfs-tools-bin (0.146ubuntu1) ... 131s Setting up ncurses-term (6.5+20250216-2) ... 131s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 131s Setting up libpython3.13:amd64 (3.13.2-2) ... 131s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 131s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 131s Setting up systemd-sysv (257.3-1ubuntu3) ... 131s Setting up linux-headers-virtual (6.14.0-10.10) ... 131s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 131s Setting up python3.13 (3.13.2-2) ... 132s Setting up htop (3.4.0-2) ... 132s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 134s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 134s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 134s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 134s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 134s Setting up parted (3.6-5) ... 134s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 134s Setting up python3 (3.13.2-2) ... 134s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 134s Setting up python3-markupsafe (2.1.5-1build4) ... 134s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 137s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 137s Setting up hwdata (0.393-3) ... 137s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 137s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 137s No schema files found: doing nothing. 137s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 137s Setting up linux-perf (6.14.0-10.10) ... 137s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 137s Setting up pciutils (1:3.13.0-2) ... 137s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 137s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 137s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 137s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 137s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 137s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 137s Setting up curl (8.12.1-3ubuntu1) ... 137s Setting up linux-image-virtual (6.14.0-10.10) ... 137s Setting up initramfs-tools-core (0.146ubuntu1) ... 137s Setting up linux-tools-common (6.14.0-10.10) ... 137s Setting up python3-systemd (235-1build6) ... 137s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 137s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 137s Setting up linux-image-generic (6.14.0-10.10) ... 137s Setting up python3-dbus (1.3.2-5build5) ... 137s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 137s Setting up initramfs-tools (0.146ubuntu1) ... 137s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 137s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 137s update-initramfs: deferring update (trigger activated) 137s Setting up linux-generic (6.14.0-10.10) ... 137s Setting up ubuntu-minimal (1.549) ... 137s Setting up python3-apt (2.9.9build1) ... 138s Setting up python3-bcrypt (4.2.0-2.1build1) ... 138s Setting up python3-yaml (6.0.2-1build2) ... 138s Setting up libfwupd3:amd64 (2.0.6-4) ... 138s Setting up python3-lazr.uri (1.0.6-6) ... 138s Setting up binutils (2.44-3ubuntu1) ... 138s Setting up ubuntu-standard (1.549) ... 138s Setting up cloud-init-base (25.1-0ubuntu3) ... 140s Setting up linux-virtual (6.14.0-10.10) ... 140s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 140s Setting up python3-gi (3.50.0-4build1) ... 140s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 140s Setting up fwupd (2.0.6-4) ... 140s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 140s fwupd.service is a disabled or a static unit not running, not starting it. 140s Setting up cloud-init (25.1-0ubuntu3) ... 140s Processing triggers for man-db (2.13.0-1) ... 142s Processing triggers for dbus (1.16.2-1ubuntu1) ... 142s Processing triggers for shared-mime-info (2.4-5) ... 142s Warning: program compiled against libxml 212 using older 209 142s Processing triggers for libc-bin (2.41-1ubuntu1) ... 143s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 143s /etc/kernel/postinst.d/initramfs-tools: 143s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 143s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 154s /etc/kernel/postinst.d/zz-update-grub: 154s Sourcing file `/etc/default/grub' 154s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 154s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 154s Generating grub configuration file ... 154s Found linux image: /boot/vmlinuz-6.14.0-10-generic 154s Found initrd image: /boot/initrd.img-6.14.0-10-generic 154s Found linux image: /boot/vmlinuz-6.12.0-16-generic 154s Found initrd image: /boot/initrd.img-6.12.0-16-generic 154s Found linux image: /boot/vmlinuz-6.11.0-8-generic 154s Found initrd image: /boot/initrd.img-6.11.0-8-generic 154s Warning: os-prober will not be executed to detect other bootable partitions. 154s Systems on them will not be added to the GRUB boot configuration. 154s Check GRUB_DISABLE_OS_PROBER documentation entry. 154s Adding boot menu entry for UEFI Firmware Settings ... 154s done 154s Processing triggers for initramfs-tools (0.146ubuntu1) ... 154s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 154s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 165s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 165s + /usr/lib/apt/apt-helper analyze-pattern ?true 165s + uname -r 165s + sed s/\./\\./g 165s + running_kernel_pattern=^linux-.*6\.12\.0-16-generic.* 165s + apt list ?obsolete 165s + tail -n+2 165s + + grep -v ^linux-.*6\.12\.0-16-generic.* 165s cut -d/ -f1 167s + obsolete_pkgs=linux-headers-6.11.0-8-generic 167s linux-headers-6.11.0-8 167s linux-headers-6.12.0-16 167s linux-image-6.11.0-8-generic 167s linux-modules-6.11.0-8-generic 167s linux-tools-6.11.0-8-generic 167s linux-tools-6.11.0-8 167s linux-tools-6.12.0-16 167s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-headers-6.12.0-16 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 linux-tools-6.12.0-16 167s Reading package lists... 167s Building dependency tree... 167s Reading state information... 167s Solving dependencies... 168s The following packages will be REMOVED: 168s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 168s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 168s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 168s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 168s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 168s linux-tools-6.12.0-16-generic* 168s 0 upgraded, 0 newly installed, 15 to remove and 5 not upgraded. 168s After this operation, 371 MB disk space will be freed. 168s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 168s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 168s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 168s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 168s Removing libpython3.12t64:amd64 (3.12.9-1) ... 168s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 168s Removing libnsl2:amd64 (1.3.0-3build3) ... 168s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 168s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 169s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 171s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 172s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 174s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 174s /etc/kernel/postrm.d/initramfs-tools: 174s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 174s /etc/kernel/postrm.d/zz-update-grub: 174s Sourcing file `/etc/default/grub' 174s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 174s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 174s Generating grub configuration file ... 174s Found linux image: /boot/vmlinuz-6.14.0-10-generic 174s Found initrd image: /boot/initrd.img-6.14.0-10-generic 175s Found linux image: /boot/vmlinuz-6.12.0-16-generic 175s Found initrd image: /boot/initrd.img-6.12.0-16-generic 175s Warning: os-prober will not be executed to detect other bootable partitions. 175s Systems on them will not be added to the GRUB boot configuration. 175s Check GRUB_DISABLE_OS_PROBER documentation entry. 175s Adding boot menu entry for UEFI Firmware Settings ... 175s done 175s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 175s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 175s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 175s Processing triggers for libc-bin (2.41-1ubuntu1) ... 175s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84830 files and directories currently installed.) 175s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 175s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 175s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 175s + grep -q trusty /etc/lsb-release 175s + [ ! -d /usr/share/doc/unattended-upgrades ] 175s + [ ! -d /usr/share/doc/lxd ] 175s + [ ! -d /usr/share/doc/lxd-client ] 175s + [ ! -d /usr/share/doc/snapd ] 175s + type iptables 175s + cat 175s + chmod 755 /etc/rc.local 175s + . /etc/rc.local 175s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 175s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 175s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 175s + uname -m 175s + [ x86_64 = ppc64le ] 175s + [ -d /run/systemd/system ] 175s + systemd-detect-virt --quiet --vm 175s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 175s + cat 175s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 175s + echo COMPRESS=lz4 175s autopkgtest [22:00:51]: upgrading testbed (apt dist-upgrade and autopurge) 176s Reading package lists... 176s Building dependency tree... 176s Reading state information... 176s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 176s Starting 2 pkgProblemResolver with broken count: 0 176s Done 177s Entering ResolveByKeep 177s 177s Calculating upgrade... 177s The following packages will be upgraded: 177s libc-bin libc-dev-bin libc6 libc6-dev locales 178s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 178s Need to get 10.5 MB of archives. 178s After this operation, 1024 B of additional disk space will be used. 178s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 178s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 178s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 179s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 179s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 180s Preconfiguring packages ... 180s Fetched 10.5 MB in 2s (4686 kB/s) 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 180s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 180s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 180s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 180s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 180s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 181s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 181s Setting up libc6:amd64 (2.41-1ubuntu2) ... 181s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 181s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 181s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 181s Setting up libc-bin (2.41-1ubuntu2) ... 181s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 181s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 181s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 181s Setting up locales (2.41-1ubuntu2) ... 182s Generating locales (this might take a while)... 184s en_US.UTF-8... done 184s Generation complete. 184s Setting up libc-dev-bin (2.41-1ubuntu2) ... 184s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 184s Processing triggers for man-db (2.13.0-1) ... 184s Processing triggers for systemd (257.3-1ubuntu3) ... 185s Reading package lists... 186s Building dependency tree... 186s Reading state information... 186s Starting pkgProblemResolver with broken count: 0 186s Starting 2 pkgProblemResolver with broken count: 0 186s Done 186s Solving dependencies... 187s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 187s autopkgtest [22:01:03]: rebooting testbed after setup commands that affected boot 210s autopkgtest [22:01:26]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 213s autopkgtest [22:01:29]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-deseq2 215s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-deseq2 1.46.0+dfsg-2 (dsc) [2408 B] 215s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-deseq2 1.46.0+dfsg-2 (tar) [597 kB] 215s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-deseq2 1.46.0+dfsg-2 (diff) [5208 B] 215s gpgv: Signature made Mon Jan 13 07:59:02 2025 UTC 215s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 215s gpgv: issuer "crusoe@debian.org" 215s gpgv: Can't check signature: No public key 215s dpkg-source: warning: cannot verify inline signature for ./r-bioc-deseq2_1.46.0+dfsg-2.dsc: no acceptable signature found 215s autopkgtest [22:01:31]: testing package r-bioc-deseq2 version 1.46.0+dfsg-2 215s autopkgtest [22:01:31]: build not needed 219s autopkgtest [22:01:35]: test pkg-r-autopkgtest: preparing testbed 219s Reading package lists... 220s Building dependency tree... 220s Reading state information... 220s Starting pkgProblemResolver with broken count: 0 220s Starting 2 pkgProblemResolver with broken count: 0 220s Done 221s The following NEW packages will be installed: 221s build-essential comerr-dev cpp cpp-14 cpp-14-x86-64-linux-gnu 221s cpp-x86-64-linux-gnu dctrl-tools fontconfig fontconfig-config 221s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 221s fonts-glyphicons-halflings fonts-mathjax g++ g++-14 g++-14-x86-64-linux-gnu 221s g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu 221s gfortran gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu 221s hdf5-helpers icu-devtools javascript-common krb5-multidev libaec-dev libaec0 221s libasan8 libblas-dev libblas3 libblosc1 libboost-dev libboost1.83-dev 221s libbrotli-dev libbz2-dev libcairo2 libcc1-0 libcurl4-openssl-dev libdatrie1 221s libdeflate-dev libdeflate0 libevent-2.1-7t64 libfontconfig1 libgcc-14-dev 221s libgfortran-14-dev libgfortran5 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 221s libgnutls-openssl27t64 libgnutls28-dev libgomp1 libgraphite2-3 libgssrpc4t64 221s libharfbuzz0b libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 221s libhdf5-hl-310 libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libhnswlib-dev 221s libhwasan0 libice6 libicu-dev libidn2-dev libisl23 libitm1 libjbig0 221s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 221s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 221s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 221s libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js 221s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 221s libjs-twitter-bootstrap-datepicker libkadm5clnt-mit12 libkadm5srv-mit12 221s libkdb5-10t64 libkrb5-dev liblapack-dev liblapack3 libldap-dev liblerc4 221s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnghttp2-dev 221s libp11-kit-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 221s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 221s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpsl-dev libquadmath0 221s libreadline-dev librtmp-dev libsharpyuv0 libsm6 libsnappy1v5 libssh2-1-dev 221s libssl-dev libstdc++-14-dev libsz2 libtasn1-6-dev libtcl8.6 libthai-data 221s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libunbound8 221s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 221s libzstd-dev littler nettle-dev node-bootstrap-sass node-html5shiv 221s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 221s r-base-core r-base-dev r-bioc-annotationdbi r-bioc-annotationfilter 221s r-bioc-annotationhub r-bioc-assorthead r-bioc-beachmat r-bioc-biobase 221s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 221s r-bioc-biocversion r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray 221s r-bioc-delayedmatrixstats r-bioc-deseq2 r-bioc-ensembldb r-bioc-genomeinfodb 221s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 221s r-bioc-genomicranges r-bioc-glmgampoi r-bioc-hdf5array r-bioc-iranges 221s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhdf5 221s r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-rhtslib r-bioc-rsamtools 221s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 221s r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats 221s r-bioc-summarizedexperiment r-bioc-txdbmaker r-bioc-tximeta r-bioc-tximport 221s r-bioc-tximportdata r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 221s r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager 221s r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-brio r-cran-bslib 221s r-cran-cachem r-cran-callr r-cran-cli r-cran-clipr r-cran-codetools 221s r-cran-colorspace r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 221s r-cran-dbi r-cran-dbplyr r-cran-desc r-cran-diffobj r-cran-digest 221s r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap 221s r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 221s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2 221s r-cran-glue r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools 221s r-cran-httpuv r-cran-httr r-cran-httr2 r-cran-isoband r-cran-jquerylib 221s r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 221s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-locfit 221s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 221s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl 221s r-cran-pbapply r-cran-pheatmap r-cran-pillar r-cran-pkgbuild 221s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png 221s r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress 221s r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs 221s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl 221s r-cran-readr r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 221s r-cran-rprojroot r-cran-rsqlite r-cran-sass r-cran-scales r-cran-shiny 221s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys 221s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 221s r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-vroom 221s r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable 221s r-cran-yaml unzip x11-common xdg-utils zip zlib1g-dev 221s 0 upgraded, 340 newly installed, 0 to remove and 0 not upgraded. 221s Need to get 369 MB of archives. 221s After this operation, 1220 MB of additional disk space will be used. 221s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 222s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 222s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 224s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 224s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 224s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 224s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 224s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 224s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 224s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 224s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 224s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 225s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 225s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 225s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 225s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 225s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 226s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 226s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 226s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 226s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 226s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 226s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 226s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 226s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 226s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 226s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 226s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 226s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 226s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 226s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 226s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 226s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 226s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 226s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 226s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 226s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 226s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 227s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 227s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 227s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 227s Get:42 http://ftpmaster.internal/ubuntu plucky/universe amd64 hdf5-helpers amd64 1.14.5+repack-3 [17.0 kB] 227s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 227s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 227s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 comerr-dev amd64 2.1-1.47.2-1ubuntu1 [44.9 kB] 227s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libgssrpc4t64 amd64 1.21.3-4ubuntu2 [58.1 kB] 227s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libkadm5clnt-mit12 amd64 1.21.3-4ubuntu2 [41.3 kB] 227s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libkdb5-10t64 amd64 1.21.3-4ubuntu2 [42.0 kB] 227s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libkadm5srv-mit12 amd64 1.21.3-4ubuntu2 [55.5 kB] 227s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 krb5-multidev amd64 1.21.3-4ubuntu2 [125 kB] 227s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 227s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 227s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 227s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB] 227s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB] 227s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB] 227s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 227s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli-dev amd64 1.1.0-2build4 [381 kB] 227s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 227s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 227s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 227s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 227s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 227s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 227s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libidn2-dev amd64 2.3.7-2build2 [120 kB] 227s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libkrb5-dev amd64 1.21.3-4ubuntu2 [11.9 kB] 227s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libldap-dev amd64 2.6.9+dfsg-1~exp2ubuntu1 [335 kB] 227s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 227s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 227s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 227s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libnghttp2-dev amd64 1.64.0-1 [123 kB] 227s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libpsl-dev amd64 0.21.2-1.1build1 [76.4 kB] 227s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3ubuntu1 [10.0 kB] 227s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3ubuntu1 [341 kB] 227s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10 [144 kB] 227s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libunbound8 amd64 1.22.0-1ubuntu1 [519 kB] 227s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-dane0t64 amd64 3.8.9-2ubuntu2 [24.4 kB] 227s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2ubuntu2 [24.6 kB] 227s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libp11-kit-dev amd64 0.25.5-2ubuntu3 [23.5 kB] 227s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libtasn1-6-dev amd64 4.20.0-2 [98.1 kB] 227s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 nettle-dev amd64 3.10.1-1 [1187 kB] 227s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls28-dev amd64 3.8.9-2ubuntu2 [1118 kB] 227s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 227s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2build7 [66.7 kB] 227s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libssl-dev amd64 3.4.1-1ubuntu1 [2873 kB] 227s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libssh2-1-dev amd64 1.11.1-1 [292 kB] 227s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [444 kB] 227s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4-openssl-dev amd64 8.12.1-3ubuntu1 [522 kB] 227s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 227s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 227s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 228s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 228s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 228s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 228s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 228s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-cpp-310 amd64 1.14.5+repack-3 [129 kB] 228s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-fortran-310 amd64 1.14.5+repack-3 [108 kB] 228s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 228s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-3 [32.4 kB] 228s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-3 [11.7 kB] 228s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 228s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 228s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 228s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 228s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 228s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec-dev amd64 1.1.3-1 [19.8 kB] 228s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-dev amd64 1.14.5+repack-3 [3505 kB] 228s Get:108 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhnswlib-dev all 0.8.0-1build3 [24.4 kB] 228s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 228s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 228s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 229s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 229s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 229s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 229s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 229s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 229s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 229s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 229s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 229s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 229s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 229s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 229s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 229s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 229s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 229s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 229s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 229s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 229s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 229s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 229s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 229s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 229s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 229s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 229s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 229s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 229s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 229s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 229s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 229s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 229s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 229s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 229s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 229s Get:144 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 229s Get:145 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 229s Get:146 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 229s Get:147 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 229s Get:148 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 229s Get:149 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 229s Get:150 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 229s Get:151 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 229s Get:152 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 229s Get:153 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 229s Get:154 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 229s Get:155 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 229s Get:156 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 230s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 231s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 231s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 231s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 231s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 231s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 231s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 231s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 231s Get:165 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 231s Get:166 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 231s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 231s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 231s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 231s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 232s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 232s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 232s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 232s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 232s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB] 232s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 232s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 232s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 232s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 232s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 232s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 232s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 232s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 232s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 232s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 232s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 232s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 232s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 232s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 232s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 232s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 232s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 232s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 232s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 232s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 232s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 232s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 232s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 232s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 232s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 232s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 233s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 233s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 233s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 235s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 235s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 235s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 236s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 236s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationfilter all 1.30.0+dfsg-2 [247 kB] 236s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 236s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 236s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 236s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 236s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 236s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 236s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 236s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 236s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 236s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 236s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 236s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 236s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 236s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbplyr all 2.5.0+dfsg-1 [1233 kB] 236s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 236s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 236s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 236s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 236s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 236s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 236s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationhub all 3.14.0+dfsg-2 [447 kB] 236s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-assorthead all 1.0.1+ds-2 [194 kB] 236s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 236s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 236s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 236s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 236s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 236s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 236s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1392 kB] 236s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 236s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 236s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 236s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-beachmat amd64 2.22.0+ds-2 [976 kB] 236s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 236s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 236s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 236s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 236s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 237s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 237s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 237s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 237s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 237s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 237s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 237s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 237s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr2 all 1.1.1-1 [752 kB] 237s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 237s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml2 amd64 1.3.7-1 [334 kB] 237s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biomart all 2.62.1+dfsg-1 [444 kB] 237s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsematrixstats amd64 1.18.0+dfsg-2 [877 kB] 237s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedmatrixstats all 1.28.1+ds-1 [502 kB] 237s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 237s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-locfit amd64 1.5-9.12-1 [552 kB] 237s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 237s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 237s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 237s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB] 237s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 237s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 237s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 237s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 237s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 237s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 237s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 237s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 237s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 237s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpparmadillo amd64 14.2.3-1-1 [864 kB] 237s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-deseq2 amd64 1.46.0+dfsg-2 [1250 kB] 237s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 237s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB] 237s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 238s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 238s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 238s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 238s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 238s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 238s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB] 238s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 238s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-protgenerics all 1.38.0-2 [239 kB] 238s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ensembldb all 2.30.0+dfsg-3 [1520 kB] 238s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5lib amd64 1.28.0+dfsg-2build1 [97.4 kB] 238s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5filters amd64 1.18.0+dfsg-2 [137 kB] 238s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5 amd64 2.50.2+dfsg-1build1 [822 kB] 238s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-hdf5array amd64 1.34.0-2build1 [8792 kB] 238s Get:294 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-singlecellexperiment all 1.28.1+ds-2 [829 kB] 238s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-glmgampoi amd64 1.18.0+dfsg-2 [1240 kB] 238s Get:296 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-txdbmaker all 1.2.1+ds-2 [875 kB] 238s Get:297 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-tximport all 1.34.0+dfsg-2 [90.4 kB] 239s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-tximeta all 1.24.0+dfsg-2 [436 kB] 239s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-tximportdata all 1.34.0+ds-2 [9562 B] 239s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 239s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 239s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 239s Get:303 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 239s Get:304 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 239s Get:305 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 239s Get:306 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 239s Get:307 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 239s Get:308 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 239s Get:309 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 239s Get:310 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-clipr all 0.8.0-1 [53.5 kB] 239s Get:311 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 239s Get:312 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 239s Get:313 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 240s Get:314 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 240s Get:315 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 240s Get:316 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 240s Get:317 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 240s Get:318 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 240s Get:319 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 240s Get:320 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 240s Get:321 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 240s Get:322 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 240s Get:323 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 240s Get:324 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pheatmap all 1.0.12-2build1 [78.2 kB] 240s Get:325 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 240s Get:326 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] 240s Get:327 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 240s Get:328 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 240s Get:329 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tzdb amd64 0.4.0-2 [521 kB] 240s Get:330 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vroom amd64 1.6.5-1 [848 kB] 240s Get:331 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-readr amd64 2.1.5-1 [766 kB] 240s Get:332 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 240s Get:333 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 240s Get:334 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 240s Get:335 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 240s Get:336 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 240s Get:337 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 240s Get:338 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 240s Get:339 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-2 [150 kB] 240s Get:340 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 241s Preconfiguring packages ... 241s Fetched 369 MB in 20s (18.8 MB/s) 241s Selecting previously unselected package libisl23:amd64. 241s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 241s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 241s Unpacking libisl23:amd64 (0.27-1) ... 241s Selecting previously unselected package libmpc3:amd64. 241s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 241s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 241s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 241s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 241s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 242s Selecting previously unselected package cpp-14. 242s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 242s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 242s Selecting previously unselected package cpp-x86-64-linux-gnu. 242s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 242s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 242s Selecting previously unselected package cpp. 242s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 242s Unpacking cpp (4:14.2.0-1ubuntu1) ... 242s Selecting previously unselected package libcc1-0:amd64. 242s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 242s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 242s Selecting previously unselected package libgomp1:amd64. 242s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 242s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 242s Selecting previously unselected package libitm1:amd64. 242s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 242s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 242s Selecting previously unselected package libasan8:amd64. 242s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 242s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 242s Selecting previously unselected package liblsan0:amd64. 242s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 242s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 242s Selecting previously unselected package libtsan2:amd64. 242s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 242s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 242s Selecting previously unselected package libubsan1:amd64. 242s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 242s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 242s Selecting previously unselected package libhwasan0:amd64. 242s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 242s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 242s Selecting previously unselected package libquadmath0:amd64. 242s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 242s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 242s Selecting previously unselected package libgcc-14-dev:amd64. 242s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 242s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 242s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 242s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 242s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 243s Selecting previously unselected package gcc-14. 243s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 243s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 243s Selecting previously unselected package gcc-x86-64-linux-gnu. 243s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 243s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 243s Selecting previously unselected package gcc. 243s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 243s Unpacking gcc (4:14.2.0-1ubuntu1) ... 243s Selecting previously unselected package libstdc++-14-dev:amd64. 243s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 243s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 243s Selecting previously unselected package g++-14-x86-64-linux-gnu. 243s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 243s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 243s Selecting previously unselected package g++-14. 243s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ... 243s Unpacking g++-14 (14.2.0-17ubuntu3) ... 243s Selecting previously unselected package g++-x86-64-linux-gnu. 243s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 243s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 244s Selecting previously unselected package g++. 244s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 244s Unpacking g++ (4:14.2.0-1ubuntu1) ... 244s Selecting previously unselected package build-essential. 244s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 244s Unpacking build-essential (12.10ubuntu1) ... 244s Selecting previously unselected package dctrl-tools. 244s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 244s Unpacking dctrl-tools (2.24-3build3) ... 244s Selecting previously unselected package fonts-dejavu-mono. 244s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 244s Unpacking fonts-dejavu-mono (2.37-8) ... 244s Selecting previously unselected package fonts-dejavu-core. 244s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 244s Unpacking fonts-dejavu-core (2.37-8) ... 244s Selecting previously unselected package fontconfig-config. 244s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 244s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 244s Selecting previously unselected package libfontconfig1:amd64. 244s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 244s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 244s Selecting previously unselected package fontconfig. 244s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 244s Unpacking fontconfig (2.15.0-2ubuntu1) ... 244s Selecting previously unselected package fonts-font-awesome. 244s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 244s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 244s Selecting previously unselected package fonts-glyphicons-halflings. 244s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 244s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 244s Selecting previously unselected package fonts-mathjax. 244s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 244s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 244s Selecting previously unselected package libgfortran5:amd64. 244s Preparing to unpack .../035-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 244s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 244s Selecting previously unselected package libgfortran-14-dev:amd64. 244s Preparing to unpack .../036-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 244s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 244s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 244s Preparing to unpack .../037-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 244s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 245s Selecting previously unselected package gfortran-14. 245s Preparing to unpack .../038-gfortran-14_14.2.0-17ubuntu3_amd64.deb ... 245s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 245s Selecting previously unselected package gfortran-x86-64-linux-gnu. 245s Preparing to unpack .../039-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 245s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 245s Selecting previously unselected package gfortran. 245s Preparing to unpack .../040-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 245s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 245s Selecting previously unselected package hdf5-helpers. 245s Preparing to unpack .../041-hdf5-helpers_1.14.5+repack-3_amd64.deb ... 245s Unpacking hdf5-helpers (1.14.5+repack-3) ... 245s Selecting previously unselected package icu-devtools. 245s Preparing to unpack .../042-icu-devtools_76.1-1ubuntu2_amd64.deb ... 245s Unpacking icu-devtools (76.1-1ubuntu2) ... 245s Selecting previously unselected package javascript-common. 245s Preparing to unpack .../043-javascript-common_12_all.deb ... 245s Unpacking javascript-common (12) ... 245s Selecting previously unselected package comerr-dev:amd64. 245s Preparing to unpack .../044-comerr-dev_2.1-1.47.2-1ubuntu1_amd64.deb ... 245s Unpacking comerr-dev:amd64 (2.1-1.47.2-1ubuntu1) ... 245s Selecting previously unselected package libgssrpc4t64:amd64. 245s Preparing to unpack .../045-libgssrpc4t64_1.21.3-4ubuntu2_amd64.deb ... 245s Unpacking libgssrpc4t64:amd64 (1.21.3-4ubuntu2) ... 245s Selecting previously unselected package libkadm5clnt-mit12:amd64. 245s Preparing to unpack .../046-libkadm5clnt-mit12_1.21.3-4ubuntu2_amd64.deb ... 245s Unpacking libkadm5clnt-mit12:amd64 (1.21.3-4ubuntu2) ... 245s Selecting previously unselected package libkdb5-10t64:amd64. 245s Preparing to unpack .../047-libkdb5-10t64_1.21.3-4ubuntu2_amd64.deb ... 245s Unpacking libkdb5-10t64:amd64 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248s Unpacking libcairo2:amd64 (1.18.2-2) ... 248s Selecting previously unselected package libidn2-dev:amd64. 248s Preparing to unpack .../064-libidn2-dev_2.3.7-2build2_amd64.deb ... 248s Unpacking libidn2-dev:amd64 (2.3.7-2build2) ... 248s Selecting previously unselected package libkrb5-dev:amd64. 248s Preparing to unpack .../065-libkrb5-dev_1.21.3-4ubuntu2_amd64.deb ... 248s Unpacking libkrb5-dev:amd64 (1.21.3-4ubuntu2) ... 248s Selecting previously unselected package libldap-dev:amd64. 248s Preparing to unpack .../066-libldap-dev_2.6.9+dfsg-1~exp2ubuntu1_amd64.deb ... 248s Unpacking libldap-dev:amd64 (2.6.9+dfsg-1~exp2ubuntu1) ... 248s Selecting previously unselected package libpkgconf3:amd64. 248s Preparing to unpack .../067-libpkgconf3_1.8.1-4_amd64.deb ... 248s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 248s Selecting previously unselected package pkgconf-bin. 248s Preparing to unpack .../068-pkgconf-bin_1.8.1-4_amd64.deb ... 248s Unpacking pkgconf-bin (1.8.1-4) ... 248s Selecting 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(2.4+20151223.gitfa8646d.1-2build7) ... 249s Selecting previously unselected package libssl-dev:amd64. 249s Preparing to unpack .../084-libssl-dev_3.4.1-1ubuntu1_amd64.deb ... 249s Unpacking libssl-dev:amd64 (3.4.1-1ubuntu1) ... 249s Selecting previously unselected package libssh2-1-dev:amd64. 249s Preparing to unpack .../085-libssh2-1-dev_1.11.1-1_amd64.deb ... 249s Unpacking libssh2-1-dev:amd64 (1.11.1-1) ... 249s Selecting previously unselected package libzstd-dev:amd64. 249s Preparing to unpack .../086-libzstd-dev_1.5.6+dfsg-2_amd64.deb ... 249s Unpacking libzstd-dev:amd64 (1.5.6+dfsg-2) ... 249s Selecting previously unselected package libcurl4-openssl-dev:amd64. 249s Preparing to unpack .../087-libcurl4-openssl-dev_8.12.1-3ubuntu1_amd64.deb ... 249s Unpacking libcurl4-openssl-dev:amd64 (8.12.1-3ubuntu1) ... 249s Selecting previously unselected package libdatrie1:amd64. 249s Preparing to unpack .../088-libdatrie1_0.2.13-3build1_amd64.deb ... 249s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 249s Selecting previously unselected package libdeflate0:amd64. 249s Preparing to unpack .../089-libdeflate0_1.23-1_amd64.deb ... 249s Unpacking libdeflate0:amd64 (1.23-1) ... 249s Selecting previously unselected package libdeflate-dev:amd64. 249s Preparing to unpack .../090-libdeflate-dev_1.23-1_amd64.deb ... 249s Unpacking libdeflate-dev:amd64 (1.23-1) ... 249s Selecting previously unselected package libgraphite2-3:amd64. 249s Preparing to unpack .../091-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 249s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 249s Selecting previously unselected package libharfbuzz0b:amd64. 249s Preparing to unpack .../092-libharfbuzz0b_10.2.0-1_amd64.deb ... 249s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 249s Selecting previously unselected package libsz2:amd64. 249s Preparing to unpack .../093-libsz2_1.1.3-1_amd64.deb ... 249s Unpacking libsz2:amd64 (1.1.3-1) ... 249s Selecting previously unselected package libhdf5-310:amd64. 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previously unselected package libhdf5-hl-cpp-310:amd64. 250s Preparing to unpack .../099-libhdf5-hl-cpp-310_1.14.5+repack-3_amd64.deb ... 250s Unpacking libhdf5-hl-cpp-310:amd64 (1.14.5+repack-3) ... 250s Selecting previously unselected package libjpeg-turbo8:amd64. 250s Preparing to unpack .../100-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 250s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 250s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 250s Preparing to unpack .../101-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ... 250s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 250s Selecting previously unselected package libjpeg8:amd64. 250s Preparing to unpack .../102-libjpeg8_8c-2ubuntu11_amd64.deb ... 250s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 250s Selecting previously unselected package libjpeg8-dev:amd64. 250s Preparing to unpack .../103-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 250s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 250s Selecting previously unselected package libjpeg-dev:amd64. 250s Preparing to unpack .../104-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 250s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 250s Selecting previously unselected package libaec-dev:amd64. 250s Preparing to unpack .../105-libaec-dev_1.1.3-1_amd64.deb ... 250s Unpacking libaec-dev:amd64 (1.1.3-1) ... 250s Selecting previously unselected package libhdf5-dev. 250s Preparing to unpack .../106-libhdf5-dev_1.14.5+repack-3_amd64.deb ... 250s Unpacking libhdf5-dev (1.14.5+repack-3) ... 250s Selecting previously unselected package libhnswlib-dev. 250s Preparing to unpack .../107-libhnswlib-dev_0.8.0-1build3_all.deb ... 250s Unpacking libhnswlib-dev (0.8.0-1build3) ... 250s Selecting previously unselected package x11-common. 250s Preparing to unpack .../108-x11-common_1%3a7.7+23ubuntu3_all.deb ... 250s Unpacking x11-common (1:7.7+23ubuntu3) ... 250s Selecting previously unselected package libice6:amd64. 250s Preparing to unpack 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package libjs-microplugin.js. 251s Preparing to unpack .../120-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 251s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 251s Selecting previously unselected package libjs-jquery-selectize.js. 251s Preparing to unpack .../121-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 251s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 251s Selecting previously unselected package libjs-jquery-ui. 251s Preparing to unpack .../122-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 251s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 251s Selecting previously unselected package libjs-json. 251s Preparing to unpack .../123-libjs-json_0~20221030+~1.0.8-1_all.deb ... 251s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 251s Selecting previously unselected package libjs-prettify. 251s Preparing to unpack .../124-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 251s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 251s Selecting previously unselected package liblapack3:amd64. 251s Preparing to unpack .../125-liblapack3_3.12.1-2_amd64.deb ... 251s Unpacking liblapack3:amd64 (3.12.1-2) ... 251s Selecting previously unselected package liblapack-dev:amd64. 251s Preparing to unpack .../126-liblapack-dev_3.12.1-2_amd64.deb ... 251s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 251s Selecting previously unselected package liblerc4:amd64. 251s Preparing to unpack .../127-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 251s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 251s Selecting previously unselected package liblua5.4-0:amd64. 251s Preparing to unpack .../128-liblua5.4-0_5.4.7-1_amd64.deb ... 251s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 251s Selecting previously unselected package libncurses-dev:amd64. 251s Preparing to unpack .../129-libncurses-dev_6.5+20250216-2_amd64.deb ... 251s Unpacking libncurses-dev:amd64 (6.5+20250216-2) ... 252s Selecting previously unselected package libthai-data. 252s Preparing to unpack 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252s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 252s Selecting previously unselected package libpaper-utils. 252s Preparing to unpack .../136-libpaper-utils_2.2.5-0.3_amd64.deb ... 252s Unpacking libpaper-utils (2.2.5-0.3) ... 252s Selecting previously unselected package libpcre2-16-0:amd64. 252s Preparing to unpack .../137-libpcre2-16-0_10.45-1_amd64.deb ... 252s Unpacking libpcre2-16-0:amd64 (10.45-1) ... 252s Selecting previously unselected package libpcre2-32-0:amd64. 252s Preparing to unpack .../138-libpcre2-32-0_10.45-1_amd64.deb ... 252s Unpacking libpcre2-32-0:amd64 (10.45-1) ... 252s Selecting previously unselected package libpcre2-posix3:amd64. 252s Preparing to unpack .../139-libpcre2-posix3_10.45-1_amd64.deb ... 252s Unpacking libpcre2-posix3:amd64 (10.45-1) ... 252s Selecting previously unselected package libpcre2-dev:amd64. 252s Preparing to unpack .../140-libpcre2-dev_10.45-1_amd64.deb ... 252s Unpacking libpcre2-dev:amd64 (10.45-1) ... 252s Selecting previously unselected package libpng-dev:amd64. 252s Preparing to unpack .../141-libpng-dev_1.6.47-1_amd64.deb ... 252s Unpacking libpng-dev:amd64 (1.6.47-1) ... 252s Selecting previously unselected package libreadline-dev:amd64. 252s Preparing to unpack .../142-libreadline-dev_8.2-6_amd64.deb ... 252s Unpacking libreadline-dev:amd64 (8.2-6) ... 252s Selecting previously unselected package libsharpyuv0:amd64. 252s Preparing to unpack .../143-libsharpyuv0_1.5.0-0.1_amd64.deb ... 252s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 252s Selecting previously unselected package libsm6:amd64. 252s Preparing to unpack .../144-libsm6_2%3a1.2.4-1_amd64.deb ... 252s Unpacking libsm6:amd64 (2:1.2.4-1) ... 252s Selecting previously unselected package libtcl8.6:amd64. 252s Preparing to unpack .../145-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 252s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 252s Selecting previously unselected package libjbig0:amd64. 252s Preparing to unpack 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(8.6.16-1) ... 252s Selecting previously unselected package libxt6t64:amd64. 252s Preparing to unpack .../152-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 252s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 252s Selecting previously unselected package zip. 252s Preparing to unpack .../153-zip_3.0-14ubuntu2_amd64.deb ... 252s Unpacking zip (3.0-14ubuntu2) ... 252s Selecting previously unselected package unzip. 252s Preparing to unpack .../154-unzip_6.0-28ubuntu6_amd64.deb ... 252s Unpacking unzip (6.0-28ubuntu6) ... 252s Selecting previously unselected package xdg-utils. 252s Preparing to unpack .../155-xdg-utils_1.2.1-2ubuntu1_all.deb ... 252s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 252s Selecting previously unselected package r-base-core. 253s Preparing to unpack .../156-r-base-core_4.4.3-1_amd64.deb ... 253s Unpacking r-base-core (4.4.3-1) ... 253s Selecting previously unselected package r-cran-littler. 253s Preparing to unpack .../157-r-cran-littler_0.3.20-2_amd64.deb ... 253s Unpacking r-cran-littler (0.3.20-2) ... 253s Selecting previously unselected package littler. 253s Preparing to unpack .../158-littler_0.3.20-2_all.deb ... 253s Unpacking littler (0.3.20-2) ... 253s Selecting previously unselected package node-bootstrap-sass. 253s Preparing to unpack .../159-node-bootstrap-sass_3.4.3-2_all.deb ... 253s Unpacking node-bootstrap-sass (3.4.3-2) ... 253s Selecting previously unselected package node-html5shiv. 253s Preparing to unpack .../160-node-html5shiv_3.7.3+dfsg-5_all.deb ... 253s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 253s Selecting previously unselected package node-normalize.css. 253s Preparing to unpack .../161-node-normalize.css_8.0.1-5_all.deb ... 253s Unpacking node-normalize.css (8.0.1-5) ... 253s Selecting previously unselected package pandoc-data. 253s Preparing to unpack .../162-pandoc-data_3.1.11.1-3build1_all.deb ... 253s Unpacking pandoc-data (3.1.11.1-3build1) ... 253s Selecting previously unselected package pandoc. 253s Preparing to unpack .../163-pandoc_3.1.11.1+ds-2_amd64.deb ... 253s Unpacking pandoc (3.1.11.1+ds-2) ... 254s Selecting previously unselected package liblzma-dev:amd64. 254s Preparing to unpack .../164-liblzma-dev_5.6.4-1_amd64.deb ... 254s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 254s Selecting previously unselected package libtirpc-dev:amd64. 254s Preparing to unpack .../165-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 254s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 254s Selecting previously unselected package r-base-dev. 254s Preparing to unpack .../166-r-base-dev_4.4.3-1_all.deb ... 254s Unpacking r-base-dev (4.4.3-1) ... 254s Selecting previously unselected package pkg-r-autopkgtest. 254s Preparing to unpack .../167-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 254s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 254s Selecting previously unselected package r-bioc-biocgenerics. 254s Preparing to unpack .../168-r-bioc-biocgenerics_0.52.0-2_all.deb ... 254s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 254s Selecting previously unselected package r-bioc-biobase. 254s Preparing to unpack .../169-r-bioc-biobase_2.66.0-2_amd64.deb ... 254s Unpacking r-bioc-biobase (2.66.0-2) ... 254s Selecting previously unselected package r-bioc-s4vectors. 254s Preparing to unpack .../170-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 254s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 254s Selecting previously unselected package r-bioc-iranges. 254s Preparing to unpack .../171-r-bioc-iranges_2.40.1-2_amd64.deb ... 254s Unpacking r-bioc-iranges (2.40.1-2) ... 254s Selecting previously unselected package r-cran-dbi. 254s Preparing to unpack .../172-r-cran-dbi_1.2.3-1_all.deb ... 254s Unpacking r-cran-dbi (1.2.3-1) ... 254s Selecting previously unselected package r-cran-bit. 254s Preparing to unpack .../173-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 254s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 254s Selecting previously unselected package r-cran-bit64. 254s Preparing to unpack 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package r-cran-blob. 255s Preparing to unpack .../180-r-cran-blob_1.2.4-1_all.deb ... 255s Unpacking r-cran-blob (1.2.4-1) ... 255s Selecting previously unselected package r-cran-fastmap. 255s Preparing to unpack .../181-r-cran-fastmap_1.2.0-1_amd64.deb ... 255s Unpacking r-cran-fastmap (1.2.0-1) ... 255s Selecting previously unselected package r-cran-cachem. 255s Preparing to unpack .../182-r-cran-cachem_1.1.0-1_amd64.deb ... 255s Unpacking r-cran-cachem (1.1.0-1) ... 255s Selecting previously unselected package r-cran-memoise. 255s Preparing to unpack .../183-r-cran-memoise_2.0.1-1_all.deb ... 255s Unpacking r-cran-memoise (2.0.1-1) ... 255s Selecting previously unselected package r-cran-pkgconfig. 255s Preparing to unpack .../184-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 255s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 255s Selecting previously unselected package r-cran-plogr. 255s Preparing to unpack .../185-r-cran-plogr_0.2.0-3build1_all.deb ... 255s Unpacking r-cran-plogr (0.2.0-3build1) ... 255s Selecting previously unselected package r-cran-cpp11. 255s Preparing to unpack .../186-r-cran-cpp11_0.5.2-1_all.deb ... 255s Unpacking r-cran-cpp11 (0.5.2-1) ... 255s Selecting previously unselected package r-cran-rsqlite. 255s Preparing to unpack .../187-r-cran-rsqlite_2.3.9-1_amd64.deb ... 255s Unpacking r-cran-rsqlite (2.3.9-1) ... 255s Selecting previously unselected package r-cran-curl. 255s Preparing to unpack .../188-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 255s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 255s Selecting previously unselected package r-cran-jsonlite. 255s Preparing to unpack .../189-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 255s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 255s Selecting previously unselected package r-cran-mime. 255s Preparing to unpack .../190-r-cran-mime_0.12-2_amd64.deb ... 255s Unpacking r-cran-mime (0.12-2) ... 255s Selecting previously unselected package r-cran-sys. 255s Preparing to unpack .../191-r-cran-sys_3.4.3-1_amd64.deb ... 255s Unpacking r-cran-sys (3.4.3-1) ... 255s Selecting previously unselected package r-cran-askpass. 255s Preparing to unpack .../192-r-cran-askpass_1.2.1-1_amd64.deb ... 255s Unpacking r-cran-askpass (1.2.1-1) ... 255s Selecting previously unselected package r-cran-openssl. 255s Preparing to unpack .../193-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 255s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 255s Selecting previously unselected package r-cran-r6. 255s Preparing to unpack .../194-r-cran-r6_2.6.1-1_all.deb ... 255s Unpacking r-cran-r6 (2.6.1-1) ... 255s Selecting previously unselected package r-cran-httr. 255s Preparing to unpack .../195-r-cran-httr_1.4.7+dfsg-1_all.deb ... 255s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 255s Selecting previously unselected package r-cran-png. 255s Preparing to unpack .../196-r-cran-png_0.1-8-1build2_amd64.deb ... 255s Unpacking r-cran-png (0.1-8-1build2) ... 255s Selecting previously unselected package r-bioc-zlibbioc. 255s Preparing to unpack .../197-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 255s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 255s Selecting previously unselected package r-bioc-xvector. 255s Preparing to unpack .../198-r-bioc-xvector_0.46.0-2_amd64.deb ... 255s Unpacking r-bioc-xvector (0.46.0-2) ... 256s Selecting previously unselected package r-bioc-ucsc.utils. 256s Preparing to unpack .../199-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 256s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 256s Selecting previously unselected package r-bioc-genomeinfodbdata. 256s Preparing to unpack .../200-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 256s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 256s Selecting previously unselected package r-bioc-genomeinfodb. 256s Preparing to unpack .../201-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 256s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 256s Selecting previously unselected package r-cran-crayon. 256s Preparing to unpack .../202-r-cran-crayon_1.5.3-1_all.deb ... 256s Unpacking r-cran-crayon (1.5.3-1) ... 256s Selecting previously unselected package r-bioc-biostrings. 256s Preparing to unpack .../203-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 256s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 256s Selecting previously unselected package r-bioc-keggrest. 256s Preparing to unpack .../204-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 256s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 256s Selecting previously unselected package r-bioc-annotationdbi. 256s Preparing to unpack .../205-r-bioc-annotationdbi_1.68.0-2_all.deb ... 256s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 256s Selecting previously unselected package r-bioc-genomicranges. 256s Preparing to unpack .../206-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 256s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 256s Selecting previously unselected package r-cran-lazyeval. 256s Preparing to unpack .../207-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 256s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 256s Selecting previously unselected package r-bioc-annotationfilter. 256s Preparing to unpack .../208-r-bioc-annotationfilter_1.30.0+dfsg-2_all.deb ... 256s Unpacking r-bioc-annotationfilter (1.30.0+dfsg-2) ... 256s Selecting previously unselected package r-cran-generics. 256s Preparing to unpack .../209-r-cran-generics_0.1.3-1_all.deb ... 256s Unpacking r-cran-generics (0.1.3-1) ... 256s Selecting previously unselected package r-cran-magrittr. 256s Preparing to unpack .../210-r-cran-magrittr_2.0.3-1_amd64.deb ... 256s Unpacking r-cran-magrittr (2.0.3-1) ... 256s Selecting previously unselected package r-cran-utf8. 256s Preparing to unpack .../211-r-cran-utf8_1.2.4-1_amd64.deb ... 256s Unpacking r-cran-utf8 (1.2.4-1) ... 256s Selecting previously unselected package r-cran-pillar. 256s Preparing to unpack .../212-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 256s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 256s Selecting previously unselected package r-cran-fansi. 256s Preparing to unpack .../213-r-cran-fansi_1.0.5-1_amd64.deb ... 256s Unpacking r-cran-fansi (1.0.5-1) ... 256s Selecting previously unselected package r-cran-tibble. 256s Preparing to unpack .../214-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 256s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 256s Selecting previously unselected package r-cran-withr. 256s Preparing to unpack .../215-r-cran-withr_3.0.2+dfsg-1_all.deb ... 256s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 256s Selecting previously unselected package r-cran-tidyselect. 256s Preparing to unpack .../216-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 256s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 257s Selecting previously unselected package r-cran-dplyr. 257s Preparing to unpack .../217-r-cran-dplyr_1.1.4-4_amd64.deb ... 257s Unpacking r-cran-dplyr (1.1.4-4) ... 257s Selecting previously unselected package r-cran-purrr. 257s Preparing to unpack .../218-r-cran-purrr_1.0.4-1_amd64.deb ... 257s Unpacking r-cran-purrr (1.0.4-1) ... 257s Selecting previously unselected package r-cran-stringi. 257s Preparing to unpack .../219-r-cran-stringi_1.8.4-1build1_amd64.deb ... 257s Unpacking r-cran-stringi (1.8.4-1build1) ... 257s Selecting previously unselected package r-cran-stringr. 257s Preparing to unpack .../220-r-cran-stringr_1.5.1-1_all.deb ... 257s Unpacking r-cran-stringr (1.5.1-1) ... 257s Selecting previously unselected package r-cran-tidyr. 257s Preparing to unpack .../221-r-cran-tidyr_1.3.1-1_amd64.deb ... 257s Unpacking r-cran-tidyr (1.3.1-1) ... 257s Selecting previously unselected package r-cran-dbplyr. 257s Preparing to unpack .../222-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ... 257s Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ... 257s Selecting previously unselected package r-cran-filelock. 257s Preparing to unpack .../223-r-cran-filelock_1.0.3-1_amd64.deb ... 257s Unpacking r-cran-filelock (1.0.3-1) ... 257s Selecting previously unselected package r-bioc-biocfilecache. 257s Preparing to unpack .../224-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 257s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 257s Selecting previously unselected package r-cran-biocmanager. 257s Preparing to unpack .../225-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 257s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 257s Selecting previously unselected package r-bioc-biocversion. 257s Preparing to unpack .../226-r-bioc-biocversion_3.20.0-2_all.deb ... 257s Unpacking r-bioc-biocversion (3.20.0-2) ... 257s Selecting previously unselected package r-cran-rappdirs. 257s Preparing to unpack .../227-r-cran-rappdirs_0.3.3-1_amd64.deb ... 257s Unpacking r-cran-rappdirs (0.3.3-1) ... 257s Selecting previously unselected package r-cran-yaml. 257s Preparing to unpack .../228-r-cran-yaml_2.3.10-1_amd64.deb ... 257s Unpacking r-cran-yaml (2.3.10-1) ... 257s Selecting previously unselected package r-bioc-annotationhub. 257s Preparing to unpack .../229-r-bioc-annotationhub_3.14.0+dfsg-2_all.deb ... 257s Unpacking r-bioc-annotationhub (3.14.0+dfsg-2) ... 257s Selecting previously unselected package r-bioc-assorthead. 257s Preparing to unpack .../230-r-bioc-assorthead_1.0.1+ds-2_all.deb ... 257s Unpacking r-bioc-assorthead (1.0.1+ds-2) ... 257s Selecting previously unselected package r-cran-lattice. 257s Preparing to unpack .../231-r-cran-lattice_0.22-6-1_amd64.deb ... 257s Unpacking r-cran-lattice (0.22-6-1) ... 257s Selecting previously unselected package r-cran-matrix. 257s Preparing to unpack .../232-r-cran-matrix_1.7-3-1_amd64.deb ... 257s Unpacking r-cran-matrix (1.7-3-1) ... 257s Selecting previously unselected package r-cran-matrixstats. 257s Preparing to unpack .../233-r-cran-matrixstats_1.5.0-1_amd64.deb ... 257s Unpacking r-cran-matrixstats (1.5.0-1) ... 257s Selecting previously unselected package r-bioc-matrixgenerics. 257s Preparing to unpack .../234-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 257s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 257s Selecting previously unselected package r-cran-abind. 257s Preparing to unpack .../235-r-cran-abind_1.4-8-1_all.deb ... 257s Unpacking r-cran-abind (1.4-8-1) ... 257s Selecting previously unselected package r-bioc-s4arrays. 258s Preparing to unpack .../236-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 258s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 258s Selecting previously unselected package r-bioc-sparsearray. 258s Preparing to unpack .../237-r-bioc-sparsearray_1.6.2+dfsg-1_amd64.deb ... 258s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 258s Selecting previously unselected package r-bioc-delayedarray. 258s Preparing to unpack .../238-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 258s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 258s Selecting previously unselected package r-cran-pkgkitten. 258s Preparing to unpack .../239-r-cran-pkgkitten_0.2.4-1_all.deb ... 258s Unpacking r-cran-pkgkitten (0.2.4-1) ... 258s Selecting previously unselected package r-cran-rcpp. 258s Preparing to unpack .../240-r-cran-rcpp_1.0.14-1_amd64.deb ... 258s Unpacking r-cran-rcpp (1.0.14-1) ... 258s Selecting previously unselected package r-bioc-beachmat. 258s Preparing to unpack .../241-r-bioc-beachmat_2.22.0+ds-2_amd64.deb ... 258s Unpacking r-bioc-beachmat (2.22.0+ds-2) ... 258s Selecting previously unselected package r-bioc-biocio. 258s Preparing to unpack .../242-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 258s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 258s Selecting previously unselected package r-cran-formatr. 258s Preparing to unpack .../243-r-cran-formatr_1.14-2_all.deb ... 258s Unpacking r-cran-formatr (1.14-2) ... 258s Selecting previously unselected package r-cran-lambda.r. 258s Preparing to unpack .../244-r-cran-lambda.r_1.2.4-2build1_all.deb ... 258s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 258s Selecting previously unselected package r-cran-futile.options. 258s Preparing to unpack .../245-r-cran-futile.options_1.0.1-3build1_all.deb ... 258s Unpacking r-cran-futile.options (1.0.1-3build1) ... 258s Selecting previously unselected package r-cran-futile.logger. 258s Preparing to unpack .../246-r-cran-futile.logger_1.4.3-4build1_all.deb ... 258s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 258s Selecting previously unselected package r-cran-snow. 258s Preparing to unpack .../247-r-cran-snow_1%3a0.4.4-2_all.deb ... 258s Unpacking r-cran-snow (1:0.4.4-2) ... 258s Selecting previously unselected package r-cran-codetools. 258s Preparing to unpack .../248-r-cran-codetools_0.2-20-1_all.deb ... 258s Unpacking r-cran-codetools (0.2-20-1) ... 258s Selecting previously unselected package r-cran-bh. 258s Preparing to unpack .../249-r-cran-bh_1.84.0-1_all.deb ... 258s Unpacking r-cran-bh (1.84.0-1) ... 258s Selecting previously unselected package r-bioc-biocparallel. 258s Preparing to unpack .../250-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 258s Unpacking r-bioc-biocparallel (1.40.0-2) ... 258s Selecting previously unselected package r-cran-hms. 258s Preparing to unpack .../251-r-cran-hms_1.1.3-1_all.deb ... 258s Unpacking r-cran-hms (1.1.3-1) ... 258s Selecting previously unselected package r-cran-prettyunits. 258s Preparing to unpack .../252-r-cran-prettyunits_1.2.0-1_all.deb ... 258s Unpacking r-cran-prettyunits (1.2.0-1) ... 258s Selecting previously unselected package r-cran-progress. 258s Preparing to unpack .../253-r-cran-progress_1.2.3-1_all.deb ... 258s Unpacking r-cran-progress (1.2.3-1) ... 258s Selecting previously unselected package r-cran-httr2. 258s Preparing to unpack .../254-r-cran-httr2_1.1.1-1_all.deb ... 258s Unpacking r-cran-httr2 (1.1.1-1) ... 259s Selecting previously unselected package r-cran-digest. 259s Preparing to unpack .../255-r-cran-digest_0.6.37-1_amd64.deb ... 259s Unpacking r-cran-digest (0.6.37-1) ... 259s Selecting previously unselected package r-cran-xml2. 259s Preparing to unpack .../256-r-cran-xml2_1.3.7-1_amd64.deb ... 259s Unpacking r-cran-xml2 (1.3.7-1) ... 259s Selecting previously unselected package r-bioc-biomart. 259s Preparing to unpack .../257-r-bioc-biomart_2.62.1+dfsg-1_all.deb ... 259s Unpacking r-bioc-biomart (2.62.1+dfsg-1) ... 259s Selecting previously unselected package r-bioc-sparsematrixstats. 259s Preparing to unpack .../258-r-bioc-sparsematrixstats_1.18.0+dfsg-2_amd64.deb ... 259s Unpacking r-bioc-sparsematrixstats (1.18.0+dfsg-2) ... 259s Selecting previously unselected package r-bioc-delayedmatrixstats. 259s Preparing to unpack .../259-r-bioc-delayedmatrixstats_1.28.1+ds-1_all.deb ... 259s Unpacking r-bioc-delayedmatrixstats (1.28.1+ds-1) ... 259s Selecting previously unselected package r-bioc-summarizedexperiment. 259s Preparing to unpack .../260-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 259s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 259s Selecting previously unselected package r-cran-locfit. 259s Preparing to unpack .../261-r-cran-locfit_1.5-9.12-1_amd64.deb ... 259s Unpacking r-cran-locfit (1.5-9.12-1) ... 259s Selecting previously unselected package r-cran-gtable. 259s Preparing to unpack .../262-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 259s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 259s Selecting previously unselected package r-cran-isoband. 259s Preparing to unpack .../263-r-cran-isoband_0.2.7-1_amd64.deb ... 259s Unpacking r-cran-isoband (0.2.7-1) ... 259s Selecting previously unselected package r-cran-mass. 259s Preparing to unpack .../264-r-cran-mass_7.3-64-1_amd64.deb ... 259s Unpacking r-cran-mass (7.3-64-1) ... 259s Selecting previously unselected package r-cran-nlme. 259s Preparing to unpack .../265-r-cran-nlme_3.1.167-1_amd64.deb ... 259s Unpacking r-cran-nlme (3.1.167-1) ... 259s Selecting previously unselected package r-cran-mgcv. 259s Preparing to unpack .../266-r-cran-mgcv_1.9-1-1_amd64.deb ... 259s Unpacking r-cran-mgcv (1.9-1-1) ... 259s Selecting previously unselected package r-cran-farver. 259s Preparing to unpack .../267-r-cran-farver_2.1.2-1_amd64.deb ... 259s Unpacking r-cran-farver (2.1.2-1) ... 259s Selecting previously unselected package r-cran-labeling. 259s Preparing to unpack .../268-r-cran-labeling_0.4.3-1_all.deb ... 259s Unpacking r-cran-labeling (0.4.3-1) ... 259s Selecting previously unselected package r-cran-colorspace. 259s Preparing to unpack .../269-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 259s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 259s Selecting previously unselected package r-cran-munsell. 259s Preparing to unpack .../270-r-cran-munsell_0.5.1-1_all.deb ... 259s Unpacking r-cran-munsell (0.5.1-1) ... 259s Selecting previously unselected package r-cran-rcolorbrewer. 259s Preparing to unpack .../271-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 259s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 259s Selecting previously unselected package r-cran-viridislite. 259s Preparing to unpack .../272-r-cran-viridislite_0.4.2-2_all.deb ... 259s Unpacking r-cran-viridislite (0.4.2-2) ... 259s Selecting previously unselected package r-cran-scales. 259s Preparing to unpack .../273-r-cran-scales_1.3.0-1_all.deb ... 259s Unpacking r-cran-scales (1.3.0-1) ... 259s Selecting previously unselected package r-cran-ggplot2. 259s Preparing to unpack .../274-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 259s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 260s Selecting previously unselected package r-cran-rcpparmadillo. 260s Preparing to unpack .../275-r-cran-rcpparmadillo_14.2.3-1-1_amd64.deb ... 260s Unpacking r-cran-rcpparmadillo (14.2.3-1-1) ... 260s Selecting previously unselected package r-bioc-deseq2. 260s Preparing to unpack .../276-r-bioc-deseq2_1.46.0+dfsg-2_amd64.deb ... 260s Unpacking r-bioc-deseq2 (1.46.0+dfsg-2) ... 260s Selecting previously unselected package r-cran-xml. 260s Preparing to unpack .../277-r-cran-xml_3.99-0.18-1_amd64.deb ... 260s Unpacking r-cran-xml (3.99-0.18-1) ... 260s Selecting previously unselected package r-cran-bitops. 260s Preparing to unpack .../278-r-cran-bitops_1.0-9-1_amd64.deb ... 260s Unpacking r-cran-bitops (1.0-9-1) ... 260s Selecting previously unselected package r-bioc-rhtslib. 260s Preparing to unpack .../279-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ... 260s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 260s Selecting previously unselected package r-bioc-rsamtools. 260s Preparing to unpack .../280-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ... 260s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 260s Selecting previously unselected package r-bioc-genomicalignments. 260s Preparing to unpack .../281-r-bioc-genomicalignments_1.42.0-2_amd64.deb ... 260s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 260s Selecting previously unselected package r-cran-rcurl. 260s Preparing to unpack .../282-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 260s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 260s Selecting previously unselected package r-cran-rjson. 260s Preparing to unpack .../283-r-cran-rjson_0.2.23-1_amd64.deb ... 260s Unpacking r-cran-rjson (0.2.23-1) ... 260s Selecting previously unselected package r-cran-restfulr. 260s Preparing to unpack .../284-r-cran-restfulr_0.0.15-1_amd64.deb ... 260s Unpacking r-cran-restfulr (0.0.15-1) ... 260s Selecting previously unselected package r-bioc-rtracklayer. 260s Preparing to unpack .../285-r-bioc-rtracklayer_1.66.0-2_amd64.deb ... 260s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 260s Selecting previously unselected package r-bioc-genomicfeatures. 260s Preparing to unpack .../286-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ... 260s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 260s Selecting previously unselected package r-bioc-protgenerics. 260s Preparing to unpack .../287-r-bioc-protgenerics_1.38.0-2_all.deb ... 260s Unpacking r-bioc-protgenerics (1.38.0-2) ... 260s Selecting previously unselected package r-bioc-ensembldb. 260s Preparing to unpack .../288-r-bioc-ensembldb_2.30.0+dfsg-3_all.deb ... 260s Unpacking r-bioc-ensembldb (2.30.0+dfsg-3) ... 261s Selecting previously unselected package r-bioc-rhdf5lib. 261s Preparing to unpack .../289-r-bioc-rhdf5lib_1.28.0+dfsg-2build1_amd64.deb ... 261s Unpacking r-bioc-rhdf5lib (1.28.0+dfsg-2build1) ... 261s Selecting previously unselected package r-bioc-rhdf5filters. 261s Preparing to unpack .../290-r-bioc-rhdf5filters_1.18.0+dfsg-2_amd64.deb ... 261s Unpacking r-bioc-rhdf5filters (1.18.0+dfsg-2) ... 261s Selecting previously unselected package r-bioc-rhdf5. 261s Preparing to unpack .../291-r-bioc-rhdf5_2.50.2+dfsg-1build1_amd64.deb ... 261s Unpacking r-bioc-rhdf5 (2.50.2+dfsg-1build1) ... 261s Selecting previously unselected package r-bioc-hdf5array. 261s Preparing to unpack .../292-r-bioc-hdf5array_1.34.0-2build1_amd64.deb ... 261s Unpacking r-bioc-hdf5array (1.34.0-2build1) ... 261s Selecting previously unselected package r-bioc-singlecellexperiment. 261s Preparing to unpack .../293-r-bioc-singlecellexperiment_1.28.1+ds-2_all.deb ... 261s Unpacking r-bioc-singlecellexperiment (1.28.1+ds-2) ... 261s Selecting previously unselected package r-bioc-glmgampoi. 261s Preparing to unpack .../294-r-bioc-glmgampoi_1.18.0+dfsg-2_amd64.deb ... 261s Unpacking r-bioc-glmgampoi (1.18.0+dfsg-2) ... 261s Selecting previously unselected package r-bioc-txdbmaker. 261s Preparing to unpack .../295-r-bioc-txdbmaker_1.2.1+ds-2_all.deb ... 261s Unpacking r-bioc-txdbmaker (1.2.1+ds-2) ... 261s Selecting previously unselected package r-bioc-tximport. 261s Preparing to unpack .../296-r-bioc-tximport_1.34.0+dfsg-2_all.deb ... 261s Unpacking r-bioc-tximport (1.34.0+dfsg-2) ... 261s Selecting previously unselected package r-bioc-tximeta. 261s Preparing to unpack .../297-r-bioc-tximeta_1.24.0+dfsg-2_all.deb ... 261s Unpacking r-bioc-tximeta (1.24.0+dfsg-2) ... 261s Selecting previously unselected package r-bioc-tximportdata. 261s Preparing to unpack .../298-r-bioc-tximportdata_1.34.0+ds-2_all.deb ... 261s Unpacking r-bioc-tximportdata (1.34.0+ds-2) ... 261s Selecting previously unselected package r-cran-base64enc. 261s Preparing to unpack .../299-r-cran-base64enc_0.1-3-3_amd64.deb ... 261s Unpacking r-cran-base64enc (0.1-3-3) ... 261s Selecting previously unselected package r-cran-brio. 261s Preparing to unpack .../300-r-cran-brio_1.1.5-1_amd64.deb ... 261s Unpacking r-cran-brio (1.1.5-1) ... 261s Selecting previously unselected package r-cran-htmltools. 261s Preparing to unpack .../301-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 261s Unpacking r-cran-htmltools (0.5.8.1-1) ... 261s Selecting previously unselected package r-cran-jquerylib. 261s Preparing to unpack .../302-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 261s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 261s Selecting previously unselected package r-cran-fs. 261s Preparing to unpack .../303-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 261s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 261s Selecting previously unselected package r-cran-sass. 261s Preparing to unpack .../304-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 261s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 261s Selecting previously unselected package r-cran-bslib. 261s Preparing to unpack .../305-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 261s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 261s Selecting previously unselected package r-cran-ps. 261s Preparing to unpack .../306-r-cran-ps_1.9.0-1_amd64.deb ... 261s Unpacking r-cran-ps (1.9.0-1) ... 261s Selecting previously unselected package r-cran-processx. 261s Preparing to unpack .../307-r-cran-processx_3.8.6-1_amd64.deb ... 261s Unpacking r-cran-processx (3.8.6-1) ... 262s Selecting previously unselected package r-cran-callr. 262s Preparing to unpack .../308-r-cran-callr_3.7.6-1_all.deb ... 262s Unpacking r-cran-callr (3.7.6-1) ... 262s Selecting previously unselected package r-cran-clipr. 262s Preparing to unpack .../309-r-cran-clipr_0.8.0-1_all.deb ... 262s Unpacking r-cran-clipr (0.8.0-1) ... 262s Selecting previously unselected package r-cran-commonmark. 262s Preparing to unpack .../310-r-cran-commonmark_1.9.2-2_amd64.deb ... 262s Unpacking r-cran-commonmark (1.9.2-2) ... 262s Selecting previously unselected package r-cran-desc. 262s Preparing to unpack .../311-r-cran-desc_1.4.3-1_all.deb ... 262s Unpacking r-cran-desc (1.4.3-1) ... 262s Selecting previously unselected package r-cran-diffobj. 262s Preparing to unpack .../312-r-cran-diffobj_0.3.5-1_amd64.deb ... 262s Unpacking r-cran-diffobj (0.3.5-1) ... 262s Selecting previously unselected package r-cran-evaluate. 262s Preparing to unpack .../313-r-cran-evaluate_1.0.3-1_all.deb ... 262s Unpacking r-cran-evaluate (1.0.3-1) ... 262s Selecting previously unselected package r-cran-fontawesome. 262s Preparing to unpack .../314-r-cran-fontawesome_0.5.3-1_all.deb ... 262s Unpacking r-cran-fontawesome (0.5.3-1) ... 262s Selecting previously unselected package r-cran-xfun. 262s Preparing to unpack .../315-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 262s Unpacking r-cran-xfun (0.51+dfsg-1) ... 262s Selecting previously unselected package r-cran-highr. 262s Preparing to unpack .../316-r-cran-highr_0.11+dfsg-1_all.deb ... 262s Unpacking r-cran-highr (0.11+dfsg-1) ... 262s Selecting previously unselected package r-cran-later. 262s Preparing to unpack .../317-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 262s Unpacking r-cran-later (1.4.1+dfsg-1) ... 262s Selecting previously unselected package r-cran-promises. 262s Preparing to unpack .../318-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 262s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 262s Selecting previously unselected package r-cran-httpuv. 262s Preparing to unpack .../319-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 262s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 262s Selecting previously unselected package libjs-mathjax. 262s Preparing to unpack .../320-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 262s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 263s Selecting previously unselected package r-cran-knitr. 263s Preparing to unpack .../321-r-cran-knitr_1.49+dfsg-1_all.deb ... 263s Unpacking r-cran-knitr (1.49+dfsg-1) ... 263s Selecting previously unselected package r-cran-pbapply. 263s Preparing to unpack .../322-r-cran-pbapply_1.7-2-1_all.deb ... 263s Unpacking r-cran-pbapply (1.7-2-1) ... 263s Selecting previously unselected package r-cran-pheatmap. 263s Preparing to unpack .../323-r-cran-pheatmap_1.0.12-2build1_all.deb ... 263s Unpacking r-cran-pheatmap (1.0.12-2build1) ... 263s Selecting previously unselected package r-cran-pkgbuild. 263s Preparing to unpack .../324-r-cran-pkgbuild_1.4.6-1_all.deb ... 263s Unpacking r-cran-pkgbuild (1.4.6-1) ... 263s Selecting previously unselected package r-cran-rprojroot. 263s Preparing to unpack .../325-r-cran-rprojroot_2.0.4-2_all.deb ... 263s Unpacking r-cran-rprojroot (2.0.4-2) ... 263s Selecting previously unselected package r-cran-pkgload. 263s Preparing to unpack .../326-r-cran-pkgload_1.4.0-1_all.deb ... 263s Unpacking r-cran-pkgload (1.4.0-1) ... 263s Selecting previously unselected package r-cran-praise. 263s Preparing to unpack .../327-r-cran-praise_1.0.0-4build1_all.deb ... 263s Unpacking r-cran-praise (1.0.0-4build1) ... 263s Selecting previously unselected package r-cran-tzdb. 263s Preparing to unpack .../328-r-cran-tzdb_0.4.0-2_amd64.deb ... 263s Unpacking r-cran-tzdb (0.4.0-2) ... 263s Selecting previously unselected package r-cran-vroom. 263s Preparing to unpack .../329-r-cran-vroom_1.6.5-1_amd64.deb ... 263s Unpacking r-cran-vroom (1.6.5-1) ... 263s Selecting previously unselected package r-cran-readr. 263s Preparing to unpack .../330-r-cran-readr_2.1.5-1_amd64.deb ... 263s Unpacking r-cran-readr (2.1.5-1) ... 263s Selecting previously unselected package r-cran-tinytex. 263s Preparing to unpack .../331-r-cran-tinytex_0.56-1_all.deb ... 263s Unpacking r-cran-tinytex (0.56-1) ... 263s Selecting previously unselected package libjs-modernizr. 264s Preparing to unpack .../332-libjs-modernizr_3.13.0-0.1_all.deb ... 264s Unpacking libjs-modernizr (3.13.0-0.1) ... 264s Selecting previously unselected package r-cran-xtable. 264s Preparing to unpack .../333-r-cran-xtable_1%3a1.8-4-2_all.deb ... 264s Unpacking r-cran-xtable (1:1.8-4-2) ... 264s Selecting previously unselected package r-cran-sourcetools. 264s Preparing to unpack .../334-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 264s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 264s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 264s Preparing to unpack .../335-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 264s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 264s Selecting previously unselected package r-cran-shiny. 264s Preparing to unpack .../336-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 264s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 264s Selecting previously unselected package r-cran-rmarkdown. 264s 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(2.50.2+dfsg-1build1) ... 268s Setting up r-cran-munsell (0.5.1-1) ... 268s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 268s Setting up r-cran-fontawesome (0.5.3-1) ... 268s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 268s Setting up gfortran (4:14.2.0-1ubuntu1) ... 268s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 268s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 268s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 268s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 268s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 268s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 268s Setting up r-cran-httr2 (1.1.1-1) ... 268s Setting up r-cran-httr (1.4.7+dfsg-1) ... 268s Setting up r-cran-hms (1.1.3-1) ... 268s Setting up r-cran-scales (1.3.0-1) ... 268s Setting up r-cran-memoise (2.0.1-1) ... 268s Setting up r-cran-promises (1.3.2+dfsg-1) ... 268s Setting up r-cran-purrr (1.0.4-1) ... 268s Setting up r-cran-blob (1.2.4-1) ... 268s Setting up r-bioc-xvector (0.46.0-2) ... 268s Setting up r-cran-pkgbuild (1.4.6-1) ... 268s Setting up r-cran-dplyr (1.1.4-4) ... 268s Setting up r-cran-rsqlite (2.3.9-1) ... 268s Setting up r-cran-progress (1.2.3-1) ... 268s Setting up r-cran-pheatmap (1.0.12-2build1) ... 268s Setting up r-cran-pkgload (1.4.0-1) ... 268s Setting up r-cran-vroom (1.6.5-1) ... 268s Setting up r-base-dev (4.4.3-1) ... 268s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 268s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 268s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 268s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 268s Setting up r-cran-testthat (3.2.3-1) ... 268s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 268s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 268s Setting up r-cran-readr (2.1.5-1) ... 268s Setting up r-cran-tidyr (1.3.1-1) ... 268s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 268s Setting up r-cran-dbplyr (2.5.0+dfsg-1) ... 268s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 268s Setting up r-bioc-hdf5array (1.34.0-2build1) ... 268s Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ... 268s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 268s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 268s Setting up r-bioc-delayedmatrixstats (1.28.1+ds-1) ... 268s Setting up r-bioc-annotationfilter (1.30.0+dfsg-2) ... 268s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 268s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 268s Setting up r-bioc-beachmat (2.22.0+ds-2) ... 268s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 268s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 268s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 268s Setting up r-bioc-deseq2 (1.46.0+dfsg-2) ... 268s Setting up r-bioc-annotationdbi (1.68.0-2) ... 268s Setting up r-bioc-annotationhub (3.14.0+dfsg-2) ... 268s Setting up r-bioc-biomart (2.62.1+dfsg-1) ... 268s Setting up r-bioc-genomicalignments (1.42.0-2) ... 268s Setting up r-bioc-rtracklayer (1.66.0-2) ... 268s Setting up r-bioc-singlecellexperiment (1.28.1+ds-2) ... 268s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 268s Setting up r-bioc-glmgampoi (1.18.0+dfsg-2) ... 268s Setting up r-bioc-txdbmaker (1.2.1+ds-2) ... 268s Setting up r-bioc-ensembldb (2.30.0+dfsg-3) ... 268s Setting up r-bioc-tximeta (1.24.0+dfsg-2) ... 268s Processing triggers for man-db (2.13.0-1) ... 270s Processing triggers for install-info (7.1.1-1) ... 270s Processing triggers for libc-bin (2.41-1ubuntu2) ... 271s autopkgtest [22:02:27]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 271s autopkgtest [22:02:27]: test pkg-r-autopkgtest: [----------------------- 271s Test: Try to load the R library DESeq2 271s 271s R version 4.4.3 (2025-02-28) -- "Trophy Case" 271s Copyright (C) 2025 The R Foundation for Statistical Computing 271s Platform: x86_64-pc-linux-gnu 271s 271s R is free software and comes with ABSOLUTELY NO WARRANTY. 271s You are welcome to redistribute it under certain conditions. 271s Type 'license()' or 'licence()' for distribution details. 271s 271s R is a collaborative project with many contributors. 271s Type 'contributors()' for more information and 271s 'citation()' on how to cite R or R packages in publications. 271s 271s Type 'demo()' for some demos, 'help()' for on-line help, or 271s 'help.start()' for an HTML browser interface to help. 271s Type 'q()' to quit R. 271s 271s > library('DESeq2') 271s Loading required package: S4Vectors 271s Loading required package: stats4 271s Loading required package: BiocGenerics 271s 271s Attaching package: ‘BiocGenerics’ 271s 271s The following objects are masked from ‘package:stats’: 271s 271s IQR, mad, sd, var, xtabs 271s 271s The following objects are masked from ‘package:base’: 271s 271s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 271s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 271s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 271s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 271s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 271s table, tapply, union, unique, unsplit, which.max, which.min 271s 272s 272s Attaching package: ‘S4Vectors’ 272s 272s The following object is masked from ‘package:utils’: 272s 272s findMatches 272s 272s The following objects are masked from ‘package:base’: 272s 272s expand.grid, I, unname 272s 272s Loading required package: IRanges 273s Loading required package: GenomicRanges 273s Loading required package: GenomeInfoDb 273s Loading required package: SummarizedExperiment 273s Loading required package: MatrixGenerics 273s Loading required package: matrixStats 273s 273s Attaching package: ‘MatrixGenerics’ 273s 273s The following objects are masked from ‘package:matrixStats’: 273s 273s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 273s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 273s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 273s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 273s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 273s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 273s colWeightedMeans, colWeightedMedians, colWeightedSds, 273s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 273s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 273s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 273s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 273s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 273s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 273s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 273s rowWeightedSds, rowWeightedVars 273s 273s Loading required package: Biobase 274s Welcome to Bioconductor 274s 274s Vignettes contain introductory material; view with 274s 'browseVignettes()'. To cite Bioconductor, see 274s 'citation("Biobase")', and for packages 'citation("pkgname")'. 274s 274s 274s Attaching package: ‘Biobase’ 274s 274s The following object is masked from ‘package:MatrixGenerics’: 274s 274s rowMedians 274s 274s The following objects are masked from ‘package:matrixStats’: 274s 274s anyMissing, rowMedians 274s 278s > 278s > 278s Other tests are currently unsupported! 278s They will be progressively added. 279s autopkgtest [22:02:34]: test pkg-r-autopkgtest: -----------------------] 279s autopkgtest [22:02:35]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 279s pkg-r-autopkgtest PASS 280s autopkgtest [22:02:36]: @@@@@@@@@@@@@@@@@@@@ summary 280s pkg-r-autopkgtest PASS 298s nova [W] Skipping flock for amd64 298s Creating nova instance adt-plucky-amd64-r-bioc-deseq2-20250315-215756-juju-7f2275-prod-proposed-migration-environment-15-5a2c8923-5f62-470b-a8e0-b152fde8a3fa from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 298s nova [W] Timed out waiting for 3a4b461d-ffc7-438b-937f-c1e1069ea666 to get deleted.