0s autopkgtest [21:57:18]: starting date and time: 2025-03-15 21:57:18+0000 0s autopkgtest [21:57:18]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [21:57:18]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ctw4vrjm/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-cner --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-12.secgroup --name adt-plucky-amd64-r-bioc-cner-20250315-215718-juju-7f2275-prod-proposed-migration-environment-2-cf92165b-a047-4edc-8bc6-637f64869216 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 48s autopkgtest [21:58:06]: testbed dpkg architecture: amd64 49s autopkgtest [21:58:07]: testbed apt version: 2.9.31ubuntu1 49s autopkgtest [21:58:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup 49s autopkgtest [21:58:07]: testbed release detected to be: None 50s autopkgtest [21:58:08]: updating testbed package index (apt update) 50s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 51s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 51s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 51s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 51s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 51s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 51s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 51s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 51s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 51s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 51s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 51s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 51s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 51s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 51s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 51s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 51s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 51s Fetched 1265 kB in 1s (1470 kB/s) 52s Reading package lists... 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 53s Calculating upgrade... 54s Calculating upgrade... 54s The following package was automatically installed and is no longer required: 54s libnl-genl-3-200 54s Use 'sudo apt autoremove' to remove it. 54s The following NEW packages will be installed: 54s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 54s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 54s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 54s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 54s The following packages will be upgraded: 54s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 54s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 54s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 54s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 54s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 54s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 54s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 54s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 54s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 54s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 54s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 54s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 54s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 54s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 54s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 54s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 54s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 54s parted pci.ids pciutils pinentry-curses python-apt-common python3 54s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 54s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 54s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 54s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 54s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 54s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 54s xz-utils 54s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 54s Need to get 829 MB of archives. 54s After this operation, 325 MB of additional disk space will be used. 54s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 54s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 54s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 55s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 55s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 55s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 55s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 55s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 55s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 55s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 55s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 55s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 55s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 55s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 55s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 55s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 55s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 55s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 55s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 55s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 55s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 55s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 55s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 55s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 55s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 55s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 55s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 55s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 55s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 55s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 55s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 55s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 55s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 55s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 55s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 55s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 55s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 55s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 56s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 56s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 56s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 56s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 56s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 56s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 56s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 56s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 56s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 56s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 56s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 56s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 56s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 56s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 56s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 56s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 56s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 56s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 56s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 56s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 56s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 56s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 56s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 56s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 56s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 56s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 56s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 56s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 56s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 56s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 56s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 56s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 56s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 56s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 56s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 56s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 56s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 56s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 56s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 56s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 56s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 56s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 56s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 56s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 56s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 56s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 56s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 56s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 56s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 56s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 56s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 56s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 56s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 56s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 56s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 56s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 56s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 56s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 57s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 57s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 57s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 57s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 57s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 57s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 57s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 57s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 57s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 57s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 57s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 57s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 57s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 79s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 79s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 79s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 79s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 79s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 79s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 79s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 79s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 81s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 81s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 85s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 85s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 85s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 85s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 85s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 85s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 85s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 85s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 85s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 85s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 85s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 85s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 85s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 85s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 85s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 85s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 85s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 85s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 86s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 86s Preconfiguring packages ... 86s Fetched 829 MB in 32s (26.1 MB/s) 87s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 90s Preparing to unpack .../systemd_257.3-1ubuntu3_amd64.deb ... 90s Unpacking systemd (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 91s Preparing to unpack .../systemd-timesyncd_257.3-1ubuntu3_amd64.deb ... 91s Unpacking systemd-timesyncd (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 91s Preparing to unpack .../systemd-cryptsetup_257.3-1ubuntu3_amd64.deb ... 91s Unpacking systemd-cryptsetup (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 91s Preparing to unpack .../udev_257.3-1ubuntu3_amd64.deb ... 91s Unpacking udev (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 91s Preparing to unpack .../libudev1_257.3-1ubuntu3_amd64.deb ... 91s Unpacking libudev1:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 91s Setting up libudev1:amd64 (257.3-1ubuntu3) ... 91s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 91s Preparing to unpack .../libaudit1_1%3a4.0.2-2ubuntu2_amd64.deb ... 91s Unpacking libaudit1:amd64 (1:4.0.2-2ubuntu2) over (1:4.0.2-2ubuntu1) ... 91s Setting up libaudit1:amd64 (1:4.0.2-2ubuntu2) ... 91s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 92s Preparing to unpack .../libapparmor1_4.1.0~beta5-0ubuntu8_amd64.deb ... 92s Unpacking libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) over (4.1.0~beta5-0ubuntu5) ... 92s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 92s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 92s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 92s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 93s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 93s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 93s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 93s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 93s Setting up python3-minimal (3.13.2-2) ... 93s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 93s Preparing to unpack .../0-libsqlite3-0_3.46.1-2_amd64.deb ... 93s Unpacking libsqlite3-0:amd64 (3.46.1-2) over (3.46.1-1) ... 94s Preparing to unpack .../1-python3.13_3.13.2-2_amd64.deb ... 94s Unpacking python3.13 (3.13.2-2) over (3.13.2-1) ... 94s Preparing to unpack .../2-python3.13-minimal_3.13.2-2_amd64.deb ... 94s Unpacking python3.13-minimal (3.13.2-2) over (3.13.2-1) ... 94s Preparing to unpack .../3-libpython3.13-minimal_3.13.2-2_amd64.deb ... 94s Unpacking libpython3.13-minimal:amd64 (3.13.2-2) over (3.13.2-1) ... 94s Preparing to unpack .../4-libpython3.13-stdlib_3.13.2-2_amd64.deb ... 94s Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 94s Preparing to unpack .../5-libpython3-stdlib_3.13.2-2_amd64.deb ... 94s Unpacking libpython3-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 94s Preparing to unpack .../6-rsync_3.4.1+ds1-3_amd64.deb ... 94s Unpacking rsync (3.4.1+ds1-3) over (3.4.1-0syncable1) ... 94s Selecting previously unselected package libdebuginfod-common. 94s Preparing to unpack .../7-libdebuginfod-common_0.192-4_all.deb ... 94s Unpacking libdebuginfod-common (0.192-4) ... 94s Preparing to unpack .../8-libsemanage-common_3.7-2.1build1_all.deb ... 94s Unpacking libsemanage-common (3.7-2.1build1) over (3.7-2.1) ... 94s Setting up libsemanage-common (3.7-2.1build1) ... 94s (Reading database ... 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previously unselected package linux-perf. 109s Preparing to unpack .../74-linux-perf_6.14.0-10.10_amd64.deb ... 109s Unpacking linux-perf (6.14.0-10.10) ... 109s Selecting previously unselected package linux-tools-6.14.0-10. 109s Preparing to unpack .../75-linux-tools-6.14.0-10_6.14.0-10.10_amd64.deb ... 109s Unpacking linux-tools-6.14.0-10 (6.14.0-10.10) ... 109s Selecting previously unselected package linux-tools-6.14.0-10-generic. 109s Preparing to unpack .../76-linux-tools-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 109s Unpacking linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 109s Preparing to unpack .../77-pinentry-curses_1.3.1-2ubuntu3_amd64.deb ... 109s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 110s Preparing to unpack .../78-python3-lazr.uri_1.0.6-6_all.deb ... 110s Unpacking python3-lazr.uri (1.0.6-6) over (1.0.6-5) ... 110s Preparing to unpack .../79-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ... 110s Unpacking python3-rpds-py (0.21.0-2ubuntu2) over (0.21.0-2ubuntu1) ... 110s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 110s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 110s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 110s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 110s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 110s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 110s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 110s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 110s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 110s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 110s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 110s Setting up media-types (13.0.0) ... 110s Installing new version of config file /etc/mime.types ... 110s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 110s Setting up ubuntu-kernel-accessories (1.549) ... 110s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 110s Setting up pci.ids (0.0~2025.03.09-1) ... 110s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 110s Setting up apt-utils (2.9.33) ... 110s Setting up libdebuginfod-common (0.192-4) ... 110s Setting up exfatprogs (1.2.8-1) ... 110s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 110s Setting up bpftool (7.6.0+6.14.0-10.10) ... 110s Setting up libestr0:amd64 (0.1.11-2) ... 110s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 110s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 110s Setting up dosfstools (4.2-1.2) ... 110s Setting up rsyslog (8.2412.0-2ubuntu2) ... 110s info: The user `syslog' is already a member of `adm'. 112s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 112s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 112s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 112s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 112s Setting up systemd (257.3-1ubuntu3) ... 112s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 112s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 112s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 112s Setting up libparted2t64:amd64 (3.6-5) ... 112s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 112s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 112s Setting up linux-headers-generic (6.14.0-10.10) ... 112s Setting up libjemalloc2:amd64 (5.3.0-3) ... 112s Setting up locales (2.41-1ubuntu1) ... 112s Installing new version of config file /etc/locale.alias ... 113s Generating locales (this might take a while)... 115s en_US.UTF-8... done 115s Generation complete. 115s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 115s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 115s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 115s Installing new version of config file /etc/apparmor.d/fusermount3 ... 115s Installing new version of config file /etc/apparmor.d/lsusb ... 115s Installing new version of config file /etc/apparmor.d/openvpn ... 116s Reloading AppArmor profiles 117s Setting up libftdi1-2:amd64 (1.5-8build1) ... 117s Setting up libglib2.0-data (2.84.0-1) ... 117s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 117s Setting up libncurses6:amd64 (6.5+20250216-2) ... 117s Setting up strace (6.13+ds-1ubuntu1) ... 117s Setting up xz-utils (5.6.4-1) ... 117s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 118s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 118s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 118s Setting up udev (257.3-1ubuntu3) ... 119s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 121s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 121s Setting up libpci3:amd64 (1:3.13.0-2) ... 121s Setting up whiptail (0.52.24-4ubuntu2) ... 121s Setting up python-apt-common (2.9.9build1) ... 121s Setting up pnp.ids (0.393-3) ... 121s Setting up libnl-3-200:amd64 (3.7.0-1) ... 121s Setting up python3.13-minimal (3.13.2-2) ... 122s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 122s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 122s Setting up libc-dev-bin (2.41-1ubuntu1) ... 122s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 122s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 122s Setting up rsync (3.4.1+ds1-3) ... 123s rsync.service is a disabled or a static unit not running, not starting it. 123s Setting up python3.13-gdbm (3.13.2-2) ... 123s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 123s Setting up systemd-resolved (257.3-1ubuntu3) ... 123s Setting up initramfs-tools-bin (0.146ubuntu1) ... 123s Setting up ncurses-term (6.5+20250216-2) ... 123s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 123s Setting up libpython3.13:amd64 (3.13.2-2) ... 123s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 123s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 123s Setting up systemd-sysv (257.3-1ubuntu3) ... 123s Setting up linux-headers-virtual (6.14.0-10.10) ... 123s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 123s Setting up python3.13 (3.13.2-2) ... 124s Setting up htop (3.4.0-2) ... 124s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 126s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 126s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 126s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 126s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 126s Setting up parted (3.6-5) ... 126s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 126s Setting up python3 (3.13.2-2) ... 126s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 126s Setting up python3-markupsafe (2.1.5-1build4) ... 126s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 129s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 129s Setting up hwdata (0.393-3) ... 129s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 129s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 129s No schema files found: doing nothing. 129s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 129s Setting up linux-perf (6.14.0-10.10) ... 129s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 129s Setting up pciutils (1:3.13.0-2) ... 129s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 129s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 129s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 129s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 129s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 129s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 129s Setting up curl (8.12.1-3ubuntu1) ... 129s Setting up linux-image-virtual (6.14.0-10.10) ... 129s Setting up initramfs-tools-core (0.146ubuntu1) ... 129s Setting up linux-tools-common (6.14.0-10.10) ... 129s Setting up python3-systemd (235-1build6) ... 129s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 129s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 129s Setting up linux-image-generic (6.14.0-10.10) ... 129s Setting up python3-dbus (1.3.2-5build5) ... 129s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 129s Setting up initramfs-tools (0.146ubuntu1) ... 129s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 129s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 129s update-initramfs: deferring update (trigger activated) 129s Setting up linux-generic (6.14.0-10.10) ... 129s Setting up ubuntu-minimal (1.549) ... 129s Setting up python3-apt (2.9.9build1) ... 129s Setting up python3-bcrypt (4.2.0-2.1build1) ... 130s Setting up python3-yaml (6.0.2-1build2) ... 130s Setting up libfwupd3:amd64 (2.0.6-4) ... 130s Setting up python3-lazr.uri (1.0.6-6) ... 130s Setting up binutils (2.44-3ubuntu1) ... 130s Setting up ubuntu-standard (1.549) ... 130s Setting up cloud-init-base (25.1-0ubuntu3) ... 131s Setting up linux-virtual (6.14.0-10.10) ... 131s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 131s Setting up python3-gi (3.50.0-4build1) ... 132s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 132s Setting up fwupd (2.0.6-4) ... 132s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 132s fwupd.service is a disabled or a static unit not running, not starting it. 132s Setting up cloud-init (25.1-0ubuntu3) ... 132s Processing triggers for man-db (2.13.0-1) ... 134s Processing triggers for dbus (1.16.2-1ubuntu1) ... 134s Processing triggers for shared-mime-info (2.4-5) ... 134s Warning: program compiled against libxml 212 using older 209 135s Processing triggers for libc-bin (2.41-1ubuntu1) ... 135s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 135s /etc/kernel/postinst.d/initramfs-tools: 135s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 135s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 145s /etc/kernel/postinst.d/zz-update-grub: 145s Sourcing file `/etc/default/grub' 145s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 145s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 145s Generating grub configuration file ... 146s Found linux image: /boot/vmlinuz-6.14.0-10-generic 146s Found initrd image: /boot/initrd.img-6.14.0-10-generic 146s Found linux image: /boot/vmlinuz-6.12.0-16-generic 146s Found initrd image: /boot/initrd.img-6.12.0-16-generic 146s Found linux image: /boot/vmlinuz-6.11.0-8-generic 146s Found initrd image: /boot/initrd.img-6.11.0-8-generic 146s Warning: os-prober will not be executed to detect other bootable partitions. 146s Systems on them will not be added to the GRUB boot configuration. 146s Check GRUB_DISABLE_OS_PROBER documentation entry. 146s Adding boot menu entry for UEFI Firmware Settings ... 146s done 146s Processing triggers for initramfs-tools (0.146ubuntu1) ... 146s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 146s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 158s Reading package lists... 159s Building dependency tree... 159s Reading state information... 159s Solving dependencies... 159s The following packages will be REMOVED: 159s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 159s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 159s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 159s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 159s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 159s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 159s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 159s linux-tools-6.12.0-16-generic* 159s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 159s After this operation, 545 MB disk space will be freed. 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 160s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 160s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 160s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 160s Removing libpython3.12t64:amd64 (3.12.9-1) ... 160s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 160s Removing libnsl2:amd64 (1.3.0-3build3) ... 160s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 160s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 160s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 162s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 163s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 165s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 165s /etc/kernel/postrm.d/initramfs-tools: 165s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 165s /etc/kernel/postrm.d/zz-update-grub: 165s Sourcing file `/etc/default/grub' 165s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 165s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 165s Generating grub configuration file ... 166s Found linux image: /boot/vmlinuz-6.14.0-10-generic 166s Found initrd image: /boot/initrd.img-6.14.0-10-generic 166s Found linux image: /boot/vmlinuz-6.12.0-16-generic 166s Found initrd image: /boot/initrd.img-6.12.0-16-generic 166s Warning: os-prober will not be executed to detect other bootable partitions. 166s Systems on them will not be added to the GRUB boot configuration. 166s Check GRUB_DISABLE_OS_PROBER documentation entry. 166s Adding boot menu entry for UEFI Firmware Settings ... 166s done 166s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 166s W: Removing the running kernel 166s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 166s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 166s /etc/kernel/postrm.d/initramfs-tools: 166s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 166s /etc/kernel/postrm.d/zz-update-grub: 166s Sourcing file `/etc/default/grub' 166s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 166s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 166s Generating grub configuration file ... 166s Found linux image: /boot/vmlinuz-6.14.0-10-generic 166s Found initrd image: /boot/initrd.img-6.14.0-10-generic 167s Warning: os-prober will not be executed to detect other bootable partitions. 167s Systems on them will not be added to the GRUB boot configuration. 167s Check GRUB_DISABLE_OS_PROBER documentation entry. 167s Adding boot menu entry for UEFI Firmware Settings ... 167s done 167s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 167s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 169s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 169s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 169s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 169s Processing triggers for libc-bin (2.41-1ubuntu1) ... 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 169s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 169s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 169s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 169s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 169s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 169s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 169s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 169s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 169s autopkgtest [22:00:07]: upgrading testbed (apt dist-upgrade and autopurge) 169s Reading package lists... 170s Building dependency tree... 170s Reading state information... 170s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 170s Starting 2 pkgProblemResolver with broken count: 0 170s Done 171s Entering ResolveByKeep 171s 171s Calculating upgrade... 171s The following packages will be upgraded: 171s libc-bin libc-dev-bin libc6 libc6-dev locales 171s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 171s Need to get 10.5 MB of archives. 171s After this operation, 1024 B of additional disk space will be used. 171s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 172s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 172s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 172s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 172s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 172s Preconfiguring packages ... 172s Fetched 10.5 MB in 1s (10.9 MB/s) 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 173s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 173s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 173s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 173s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 173s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 173s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 173s Setting up libc6:amd64 (2.41-1ubuntu2) ... 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 173s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 173s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 173s Setting up libc-bin (2.41-1ubuntu2) ... 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 173s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 173s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 174s Setting up locales (2.41-1ubuntu2) ... 175s Generating locales (this might take a while)... 176s en_US.UTF-8... done 176s Generation complete. 176s Setting up libc-dev-bin (2.41-1ubuntu2) ... 176s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 176s Processing triggers for man-db (2.13.0-1) ... 177s Processing triggers for systemd (257.3-1ubuntu3) ... 178s Reading package lists... 178s Building dependency tree... 178s Reading state information... 178s Starting pkgProblemResolver with broken count: 0 178s Starting 2 pkgProblemResolver with broken count: 0 178s Done 179s Solving dependencies... 179s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 179s autopkgtest [22:00:17]: rebooting testbed after setup commands that affected boot 202s autopkgtest [22:00:40]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 205s autopkgtest [22:00:43]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-cner 208s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-cner 1.42.0+dfsg-2 (dsc) [2436 B] 208s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-cner 1.42.0+dfsg-2 (tar) [7750 kB] 208s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-cner 1.42.0+dfsg-2 (diff) [5280 B] 209s gpgv: Signature made Mon Jan 13 20:01:02 2025 UTC 209s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 209s gpgv: issuer "crusoe@debian.org" 209s gpgv: Can't check signature: No public key 209s dpkg-source: warning: cannot verify inline signature for ./r-bioc-cner_1.42.0+dfsg-2.dsc: no acceptable signature found 209s autopkgtest [22:00:47]: testing package r-bioc-cner version 1.42.0+dfsg-2 209s autopkgtest [22:00:47]: build not needed 212s autopkgtest [22:00:50]: test pkg-r-autopkgtest: preparing testbed 212s Reading package lists... 212s Building dependency tree... 212s Reading state information... 213s Starting pkgProblemResolver with broken count: 0 213s Starting 2 pkgProblemResolver with broken count: 0 213s Done 213s The following NEW packages will be installed: 213s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 213s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 213s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 213s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 213s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 213s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 213s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 213s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 213s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 213s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 213s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 213s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 213s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 213s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 213s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 213s libjs-popper.js libjs-prettify libjs-sifter.js 213s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 213s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 213s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 213s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 213s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 213s libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev 213s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 213s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 213s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 213s libxss1 libxt6t64 libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv 213s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 213s r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi 213s r-bioc-annotationfilter r-bioc-biobase r-bioc-biocfilecache 213s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 213s r-bioc-biocversion r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase 213s r-bioc-bsgenome r-bioc-cner r-bioc-delayedarray r-bioc-ensembldb 213s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 213s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-go.db r-bioc-gviz 213s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics 213s r-bioc-pwalign r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 213s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 213s r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-variantannotation 213s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass 213s r-cran-backports r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 213s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio 213s r-cran-bslib r-cran-cachem r-cran-callr r-cran-checkmate r-cran-chron 213s r-cran-cli r-cran-clipr r-cran-cluster r-cran-codetools r-cran-colorspace 213s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table 213s r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-desc r-cran-dichromat 213s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi 213s r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 213s r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger 213s r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue 213s r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-hms 213s r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv 213s r-cran-httr r-cran-httr2 r-cran-interp r-cran-isoband r-cran-jpeg 213s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 213s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 213s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass 213s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 213s r-cran-munsell r-cran-nlme r-cran-nnet r-cran-openssl r-cran-pillar 213s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 213s r-cran-plogr r-cran-plyr r-cran-png r-cran-powerlaw r-cran-pracma 213s r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress 213s r-cran-promises r-cran-ps r-cran-purrr r-cran-r.methodss3 r-cran-r.oo 213s r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 213s r-cran-rcppeigen r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-restfulr 213s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rprojroot 213s r-cran-rsqlite r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny 213s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival 213s r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 213s r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridis 213s r-cran-viridislite r-cran-vroom r-cran-waldo r-cran-withr r-cran-xfun 213s r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml t1utils tex-common 213s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 213s x11-common xdg-utils zip zlib1g-dev 214s 0 upgraded, 342 newly installed, 0 to remove and 0 not upgraded. 214s Need to get 538 MB of archives. 214s After this operation, 1570 MB of additional disk space will be used. 214s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 214s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 214s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 215s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 215s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 215s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 215s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 215s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 215s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 215s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 215s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 215s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 216s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 216s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 216s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 216s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 216s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 217s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 217s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 217s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 217s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 217s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 217s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 217s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 217s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 217s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 217s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 217s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 217s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 217s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 217s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 217s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 217s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 217s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 217s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 217s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 217s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 217s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 218s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 218s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 218s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 218s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 218s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 218s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 218s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 218s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 218s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 218s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 218s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 218s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB] 218s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 218s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 218s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 218s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 218s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 218s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 218s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 218s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 218s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 218s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 218s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 218s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 218s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 218s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 218s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 219s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 219s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 219s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 219s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 219s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 219s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 219s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 219s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 219s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 219s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 219s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 219s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 219s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 219s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 219s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 219s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 219s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 219s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 219s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 219s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 219s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB] 219s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 219s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 219s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 219s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 219s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 219s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 219s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 219s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 219s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 219s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 219s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 219s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 219s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 219s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 219s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 219s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 220s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 220s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 220s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 220s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 220s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 220s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB] 220s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 220s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 220s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 220s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB] 220s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 220s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 220s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB] 220s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 220s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 220s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 220s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 220s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 220s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 220s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 220s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 220s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 220s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 220s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 220s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 220s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 220s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 220s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 220s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 221s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 221s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 221s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 221s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 221s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 221s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 221s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 222s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 222s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 222s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 222s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 222s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 222s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 222s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 222s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 222s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 222s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 223s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 223s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 223s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB] 223s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 223s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 223s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 223s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 223s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 223s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 223s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 223s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 223s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 223s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 223s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 223s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 223s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 223s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 223s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 223s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 223s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 223s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 223s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 223s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 223s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 223s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 223s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 223s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 223s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 223s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 224s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 224s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 224s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 224s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 224s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 224s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 225s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 225s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB] 225s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 225s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 225s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationfilter all 1.30.0+dfsg-2 [247 kB] 225s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 225s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 225s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 225s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 225s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 225s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 225s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 225s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 225s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 225s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 225s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 225s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 225s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 225s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbplyr all 2.5.0+dfsg-1 [1233 kB] 225s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 225s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 225s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 225s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 226s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 226s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 226s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 226s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 226s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 226s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 226s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 226s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 226s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 226s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 226s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 226s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 226s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 226s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 226s Get:221 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 226s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 226s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 226s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 226s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 226s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 226s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 226s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 226s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 226s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 226s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 226s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 226s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 226s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 226s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 226s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 226s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 226s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 226s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 226s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 226s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 226s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 226s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB] 226s Get:244 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 226s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB] 227s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB] 227s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB] 228s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 231s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 231s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 231s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 231s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 231s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 231s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr2 all 1.1.1-1 [752 kB] 231s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml2 amd64 1.3.7-1 [334 kB] 231s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biomart all 2.62.1+dfsg-1 [444 kB] 231s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 231s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 231s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 231s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 231s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 231s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 231s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 231s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 231s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 232s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 232s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 232s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB] 232s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 232s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 232s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 232s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cluster amd64 2.1.8.1-1 [579 kB] 232s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 233s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 233s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nnet amd64 7.3-20-1 [116 kB] 233s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-foreign amd64 0.8.88-1 [250 kB] 233s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 233s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-data.table amd64 1.17.0+dfsg-1 [2168 kB] 233s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-backports amd64 1.5.0-2 [121 kB] 233s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-checkmate amd64 2.3.2-1 [706 kB] 233s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 233s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rstudioapi all 0.17.1-1 [299 kB] 233s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltable all 2.4.3-1 [388 kB] 233s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 233s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 233s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-chron amd64 2.3-62-1 [189 kB] 233s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB] 233s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 233s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 233s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 233s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 233s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-acepack amd64 1.6.1-1 [91.2 kB] 233s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hmisc amd64 5.2-2-1 [3584 kB] 233s Get:294 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 233s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 233s Get:296 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 233s Get:297 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 233s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 233s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1392 kB] 234s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 234s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 234s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB] 234s Get:303 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 234s Get:304 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 234s Get:305 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 235s Get:306 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 235s Get:307 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 235s Get:308 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 235s Get:309 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB] 235s Get:310 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 235s Get:311 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-bsgenome all 1.74.0-2 [7001 kB] 235s Get:312 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-variantannotation amd64 1.52.0-2 [3642 kB] 235s Get:313 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-protgenerics all 1.38.0-2 [239 kB] 235s Get:314 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ensembldb all 2.30.0+dfsg-3 [1520 kB] 235s Get:315 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biovizbase amd64 1.54.0-2 [2857 kB] 235s Get:316 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-pwalign amd64 1.2.0-2 [757 kB] 235s Get:317 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-clipr all 0.8.0-1 [53.5 kB] 235s Get:318 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tzdb amd64 0.4.0-2 [521 kB] 235s Get:319 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vroom amd64 1.6.5-1 [848 kB] 235s Get:320 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-readr amd64 2.1.5-1 [766 kB] 236s Get:321 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 236s Get:322 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] 236s Get:323 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pracma all 2.4.4-3 [1710 kB] 236s Get:324 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-powerlaw all 1.0.0-1 [3725 kB] 236s Get:325 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-go.db all 3.20.0-2 [16.5 MB] 236s Get:326 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 236s Get:327 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.oo all 1.27.0-1 [979 kB] 236s Get:328 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.utils all 2.13.0-1 [1423 kB] 237s Get:329 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-cner amd64 1.42.0+dfsg-2 [8997 kB] 237s Get:330 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-gviz all 1.50.0+dfsg-2 [4881 kB] 237s Get:331 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 237s Get:332 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 237s Get:333 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 237s Get:334 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 237s Get:335 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 237s Get:336 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 237s Get:337 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 237s Get:338 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] 237s Get:339 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 237s Get:340 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 237s Get:341 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-2 [150 kB] 237s Get:342 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 238s Preconfiguring packages ... 238s Fetched 538 MB in 24s (22.8 MB/s) 238s Selecting previously unselected package libisl23:amd64. 238s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 238s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 238s Unpacking libisl23:amd64 (0.27-1) ... 238s Selecting previously unselected package libmpc3:amd64. 238s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 238s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 238s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 238s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 238s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 239s Selecting previously unselected package cpp-14. 239s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 239s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 239s Selecting previously unselected package cpp-x86-64-linux-gnu. 239s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 239s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 239s Selecting previously unselected package cpp. 239s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 239s Unpacking cpp (4:14.2.0-1ubuntu1) ... 239s Selecting previously unselected package libcc1-0:amd64. 239s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 239s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 239s Selecting previously unselected package libgomp1:amd64. 239s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 239s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 239s Selecting previously unselected package libitm1:amd64. 239s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 239s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 239s Selecting previously unselected package libasan8:amd64. 239s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 239s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 239s Selecting previously unselected package liblsan0:amd64. 239s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 239s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 239s Selecting previously unselected package libtsan2:amd64. 239s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 239s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 239s Selecting previously unselected package libubsan1:amd64. 239s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 239s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 239s Selecting previously unselected package libhwasan0:amd64. 239s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 239s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 239s Selecting previously unselected package libquadmath0:amd64. 239s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 239s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 239s Selecting previously unselected package libgcc-14-dev:amd64. 239s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 239s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 239s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 239s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 239s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 240s Selecting previously unselected package gcc-14. 240s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 240s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 240s Selecting previously unselected package gcc-x86-64-linux-gnu. 240s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 240s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 240s Selecting previously unselected package gcc. 240s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 240s Unpacking gcc (4:14.2.0-1ubuntu1) ... 240s Selecting previously unselected package libstdc++-14-dev:amd64. 240s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 240s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 240s Selecting previously unselected package g++-14-x86-64-linux-gnu. 240s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 240s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 240s Selecting previously unselected package g++-14. 240s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ... 240s Unpacking g++-14 (14.2.0-17ubuntu3) ... 240s Selecting previously unselected package g++-x86-64-linux-gnu. 240s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 240s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 240s Selecting previously unselected package g++. 240s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 240s Unpacking g++ (4:14.2.0-1ubuntu1) ... 240s Selecting previously unselected package build-essential. 240s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 240s Unpacking build-essential (12.10ubuntu1) ... 240s Selecting previously unselected package dctrl-tools. 240s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 240s Unpacking dctrl-tools (2.24-3build3) ... 240s Selecting previously unselected package fonts-dejavu-mono. 240s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 240s Unpacking fonts-dejavu-mono (2.37-8) ... 240s Selecting previously unselected package fonts-dejavu-core. 240s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 240s Unpacking fonts-dejavu-core (2.37-8) ... 240s Selecting previously unselected package fontconfig-config. 240s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 241s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 241s Selecting previously unselected package libfontconfig1:amd64. 241s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 241s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 241s Selecting previously unselected package fontconfig. 241s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 241s Unpacking fontconfig (2.15.0-2ubuntu1) ... 241s Selecting previously unselected package fonts-font-awesome. 241s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 241s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 241s Selecting previously unselected package fonts-glyphicons-halflings. 241s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 241s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 241s Selecting previously unselected package fonts-lmodern. 241s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ... 241s Unpacking fonts-lmodern (2.005-1) ... 241s Selecting previously unselected package fonts-mathjax. 241s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 241s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 241s Selecting previously unselected package libgfortran5:amd64. 241s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 241s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 241s Selecting previously unselected package libgfortran-14-dev:amd64. 241s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 241s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 241s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 241s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 241s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 241s Selecting previously unselected package gfortran-14. 241s Preparing to unpack .../039-gfortran-14_14.2.0-17ubuntu3_amd64.deb ... 241s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 241s Selecting previously unselected package gfortran-x86-64-linux-gnu. 241s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 241s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 242s Selecting previously unselected package gfortran. 242s Preparing to unpack .../041-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 242s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 242s Selecting previously unselected package icu-devtools. 242s Preparing to unpack .../042-icu-devtools_76.1-1ubuntu2_amd64.deb ... 242s Unpacking icu-devtools (76.1-1ubuntu2) ... 242s Selecting previously unselected package javascript-common. 242s Preparing to unpack .../043-javascript-common_12_all.deb ... 242s Unpacking javascript-common (12) ... 242s Selecting previously unselected package libio-string-perl. 242s Preparing to unpack .../044-libio-string-perl_1.08-4_all.deb ... 242s Unpacking libio-string-perl (1.08-4) ... 242s Selecting previously unselected package liblatex-tounicode-perl. 242s Preparing to unpack .../045-liblatex-tounicode-perl_0.55-1_all.deb ... 242s Unpacking liblatex-tounicode-perl (0.55-1) ... 242s Selecting previously unselected package libbibtex-parser-perl. 242s Preparing to unpack .../046-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 242s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 242s Selecting previously unselected package libblas3:amd64. 242s Preparing to unpack .../047-libblas3_3.12.1-2_amd64.deb ... 242s Unpacking libblas3:amd64 (3.12.1-2) ... 242s Selecting previously unselected package libblas-dev:amd64. 242s Preparing to unpack .../048-libblas-dev_3.12.1-2_amd64.deb ... 242s Unpacking libblas-dev:amd64 (3.12.1-2) ... 242s Selecting previously unselected package libboost1.83-dev:amd64. 242s Preparing to unpack .../049-libboost1.83-dev_1.83.0-4.1ubuntu2_amd64.deb ... 242s Unpacking libboost1.83-dev:amd64 (1.83.0-4.1ubuntu2) ... 244s Selecting previously unselected package libboost-dev:amd64. 244s Preparing to unpack .../050-libboost-dev_1.83.0.2ubuntu1_amd64.deb ... 244s Unpacking libboost-dev:amd64 (1.83.0.2ubuntu1) ... 244s Selecting previously unselected package libbz2-dev:amd64. 244s Preparing to unpack .../051-libbz2-dev_1.0.8-6_amd64.deb ... 244s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 244s Selecting previously unselected package libpixman-1-0:amd64. 244s Preparing to unpack .../052-libpixman-1-0_0.44.0-3_amd64.deb ... 244s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 244s Selecting previously unselected package libxcb-render0:amd64. 244s Preparing to unpack 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previously unselected package libkpathsea6:amd64. 246s Preparing to unpack .../085-libkpathsea6_2024.20240313.70630+ds-6_amd64.deb ... 246s Unpacking libkpathsea6:amd64 (2024.20240313.70630+ds-6) ... 246s Selecting previously unselected package liblapack3:amd64. 246s Preparing to unpack .../086-liblapack3_3.12.1-2_amd64.deb ... 246s Unpacking liblapack3:amd64 (3.12.1-2) ... 246s Selecting previously unselected package liblapack-dev:amd64. 246s Preparing to unpack .../087-liblapack-dev_3.12.1-2_amd64.deb ... 246s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 246s Selecting previously unselected package liblerc4:amd64. 246s Preparing to unpack .../088-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 246s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 246s Selecting previously unselected package liblua5.4-0:amd64. 246s Preparing to unpack .../089-liblua5.4-0_5.4.7-1_amd64.deb ... 246s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 246s Selecting previously unselected package libmpfi0:amd64. 246s 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libpcre2-32-0:amd64 (10.45-1) ... 246s Selecting previously unselected package libpcre2-posix3:amd64. 246s Preparing to unpack .../101-libpcre2-posix3_10.45-1_amd64.deb ... 246s Unpacking libpcre2-posix3:amd64 (10.45-1) ... 246s Selecting previously unselected package libpcre2-dev:amd64. 246s Preparing to unpack .../102-libpcre2-dev_10.45-1_amd64.deb ... 246s Unpacking libpcre2-dev:amd64 (10.45-1) ... 246s Selecting previously unselected package libpkgconf3:amd64. 246s Preparing to unpack .../103-libpkgconf3_1.8.1-4_amd64.deb ... 246s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 246s Selecting previously unselected package zlib1g-dev:amd64. 247s Preparing to unpack .../104-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 247s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 247s Selecting previously unselected package libpng-dev:amd64. 247s Preparing to unpack .../105-libpng-dev_1.6.47-1_amd64.deb ... 247s Unpacking libpng-dev:amd64 (1.6.47-1) ... 247s Selecting previously unselected package libpotrace0:amd64. 247s Preparing to unpack .../106-libpotrace0_1.16-2build1_amd64.deb ... 247s Unpacking libpotrace0:amd64 (1.16-2build1) ... 247s Selecting previously unselected package libptexenc1:amd64. 247s Preparing to unpack .../107-libptexenc1_2024.20240313.70630+ds-6_amd64.deb ... 247s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-6) ... 247s Selecting previously unselected package libreadline-dev:amd64. 247s Preparing to unpack .../108-libreadline-dev_8.2-6_amd64.deb ... 247s Unpacking libreadline-dev:amd64 (8.2-6) ... 247s Selecting previously unselected package libsharpyuv0:amd64. 247s Preparing to unpack .../109-libsharpyuv0_1.5.0-0.1_amd64.deb ... 247s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 247s Selecting previously unselected package libsm6:amd64. 247s Preparing to unpack .../110-libsm6_2%3a1.2.4-1_amd64.deb ... 247s Unpacking libsm6:amd64 (2:1.2.4-1) ... 247s Selecting previously unselected package libsynctex2:amd64. 247s 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(1:1.2.1-1.2build1) ... 247s Selecting previously unselected package libxmu6:amd64. 247s Preparing to unpack .../122-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 247s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 247s Selecting previously unselected package libxpm4:amd64. 247s Preparing to unpack .../123-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 247s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 247s Selecting previously unselected package libxaw7:amd64. 247s Preparing to unpack .../124-libxaw7_2%3a1.0.16-1_amd64.deb ... 247s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 247s Selecting previously unselected package libxi6:amd64. 247s Preparing to unpack .../125-libxi6_2%3a1.8.2-1_amd64.deb ... 247s Unpacking libxi6:amd64 (2:1.8.2-1) ... 247s Selecting previously unselected package libzzip-0-13t64:amd64. 247s Preparing to unpack .../126-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 247s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 247s Selecting previously unselected package zip. 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(5.6.4-1) ... 249s Selecting previously unselected package pkgconf-bin. 249s Preparing to unpack .../139-pkgconf-bin_1.8.1-4_amd64.deb ... 249s Unpacking pkgconf-bin (1.8.1-4) ... 249s Selecting previously unselected package pkgconf:amd64. 249s Preparing to unpack .../140-pkgconf_1.8.1-4_amd64.deb ... 249s Unpacking pkgconf:amd64 (1.8.1-4) ... 249s Selecting previously unselected package libtirpc-dev:amd64. 249s Preparing to unpack .../141-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 249s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 249s Selecting previously unselected package r-base-dev. 249s Preparing to unpack .../142-r-base-dev_4.4.3-1_all.deb ... 249s Unpacking r-base-dev (4.4.3-1) ... 249s Selecting previously unselected package pkg-r-autopkgtest. 249s Preparing to unpack .../143-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 249s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 249s Selecting previously unselected package r-bioc-biocgenerics. 249s Preparing to unpack .../144-r-bioc-biocgenerics_0.52.0-2_all.deb ... 249s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 249s Selecting previously unselected package r-bioc-biobase. 249s Preparing to unpack .../145-r-bioc-biobase_2.66.0-2_amd64.deb ... 249s Unpacking r-bioc-biobase (2.66.0-2) ... 249s Selecting previously unselected package r-bioc-s4vectors. 249s Preparing to unpack .../146-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 249s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 250s Selecting previously unselected package r-bioc-iranges. 250s Preparing to unpack .../147-r-bioc-iranges_2.40.1-2_amd64.deb ... 250s Unpacking r-bioc-iranges (2.40.1-2) ... 250s Selecting previously unselected package r-cran-dbi. 250s Preparing to unpack .../148-r-cran-dbi_1.2.3-1_all.deb ... 250s Unpacking r-cran-dbi (1.2.3-1) ... 250s Selecting previously unselected package r-cran-bit. 250s Preparing to unpack .../149-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 250s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 250s Selecting previously unselected package r-cran-bit64. 250s Preparing to unpack .../150-r-cran-bit64_4.6.0-1-1ubuntu2_amd64.deb ... 250s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 250s Selecting previously unselected package r-cran-rlang. 250s Preparing to unpack .../151-r-cran-rlang_1.1.5-1_amd64.deb ... 250s Unpacking r-cran-rlang (1.1.5-1) ... 250s Selecting previously unselected package r-cran-cli. 250s Preparing to unpack .../152-r-cran-cli_3.6.4-1_amd64.deb ... 250s Unpacking r-cran-cli (3.6.4-1) ... 250s Selecting previously unselected package r-cran-glue. 250s Preparing to unpack .../153-r-cran-glue_1.8.0-1_amd64.deb ... 250s Unpacking r-cran-glue (1.8.0-1) ... 250s Selecting previously unselected package r-cran-lifecycle. 250s Preparing to unpack .../154-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 250s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 250s Selecting previously unselected package r-cran-vctrs. 250s Preparing to unpack .../155-r-cran-vctrs_0.6.5-1_amd64.deb ... 250s Unpacking r-cran-vctrs (0.6.5-1) ... 250s Selecting previously unselected package r-cran-blob. 250s Preparing to unpack .../156-r-cran-blob_1.2.4-1_all.deb ... 250s Unpacking r-cran-blob (1.2.4-1) ... 250s Selecting previously unselected package r-cran-fastmap. 250s Preparing to unpack .../157-r-cran-fastmap_1.2.0-1_amd64.deb ... 250s Unpacking r-cran-fastmap (1.2.0-1) ... 250s Selecting previously unselected package r-cran-cachem. 250s Preparing to unpack .../158-r-cran-cachem_1.1.0-1_amd64.deb ... 250s Unpacking r-cran-cachem (1.1.0-1) ... 250s Selecting previously unselected package r-cran-memoise. 250s Preparing to unpack .../159-r-cran-memoise_2.0.1-1_all.deb ... 250s Unpacking r-cran-memoise (2.0.1-1) ... 250s Selecting previously unselected package r-cran-pkgconfig. 250s Preparing to unpack .../160-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 250s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 250s Selecting previously unselected package r-cran-plogr. 250s Preparing to unpack .../161-r-cran-plogr_0.2.0-3build1_all.deb ... 250s Unpacking r-cran-plogr (0.2.0-3build1) ... 250s Selecting previously unselected package r-cran-cpp11. 250s Preparing to unpack .../162-r-cran-cpp11_0.5.2-1_all.deb ... 250s Unpacking r-cran-cpp11 (0.5.2-1) ... 250s Selecting previously unselected package r-cran-rsqlite. 250s Preparing to unpack .../163-r-cran-rsqlite_2.3.9-1_amd64.deb ... 250s Unpacking r-cran-rsqlite (2.3.9-1) ... 251s Selecting previously unselected package r-cran-curl. 251s Preparing to unpack .../164-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 251s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 251s Selecting previously unselected package r-cran-jsonlite. 251s Preparing to unpack .../165-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 251s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 251s Selecting previously unselected package r-cran-mime. 251s Preparing to unpack .../166-r-cran-mime_0.12-2_amd64.deb ... 251s Unpacking r-cran-mime (0.12-2) ... 251s Selecting previously unselected package r-cran-sys. 251s Preparing to unpack .../167-r-cran-sys_3.4.3-1_amd64.deb ... 251s Unpacking r-cran-sys (3.4.3-1) ... 251s Selecting previously unselected package r-cran-askpass. 251s Preparing to unpack .../168-r-cran-askpass_1.2.1-1_amd64.deb ... 251s Unpacking r-cran-askpass (1.2.1-1) ... 251s Selecting previously unselected package r-cran-openssl. 251s Preparing to unpack .../169-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 251s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 251s Selecting previously unselected package r-cran-r6. 251s Preparing to unpack .../170-r-cran-r6_2.6.1-1_all.deb ... 251s Unpacking r-cran-r6 (2.6.1-1) ... 251s Selecting previously unselected package r-cran-httr. 251s Preparing to unpack .../171-r-cran-httr_1.4.7+dfsg-1_all.deb ... 251s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 251s Selecting previously unselected package r-cran-png. 251s Preparing to unpack .../172-r-cran-png_0.1-8-1build2_amd64.deb ... 251s Unpacking r-cran-png (0.1-8-1build2) ... 251s Selecting previously unselected package r-bioc-zlibbioc. 251s Preparing to unpack .../173-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 251s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 251s Selecting previously unselected package r-bioc-xvector. 251s Preparing to unpack .../174-r-bioc-xvector_0.46.0-2_amd64.deb ... 251s Unpacking r-bioc-xvector (0.46.0-2) ... 251s Selecting previously unselected package r-bioc-ucsc.utils. 251s Preparing to unpack .../175-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 251s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 251s Selecting previously unselected package r-bioc-genomeinfodbdata. 251s Preparing to unpack .../176-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 251s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 251s Selecting previously unselected package r-bioc-genomeinfodb. 251s Preparing to unpack .../177-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 251s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 251s Selecting previously unselected package r-cran-crayon. 251s Preparing to unpack .../178-r-cran-crayon_1.5.3-1_all.deb ... 251s Unpacking r-cran-crayon (1.5.3-1) ... 251s Selecting previously unselected package r-bioc-biostrings. 251s Preparing to unpack .../179-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 251s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 251s Selecting previously unselected package r-bioc-keggrest. 251s Preparing to unpack .../180-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 251s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 251s Selecting previously unselected package r-bioc-annotationdbi. 251s Preparing to unpack .../181-r-bioc-annotationdbi_1.68.0-2_all.deb ... 251s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 251s Selecting previously unselected package r-cran-xml. 251s Preparing to unpack .../182-r-cran-xml_3.99-0.18-1_amd64.deb ... 251s Unpacking r-cran-xml (3.99-0.18-1) ... 252s Selecting previously unselected package r-cran-xtable. 252s Preparing to unpack .../183-r-cran-xtable_1%3a1.8-4-2_all.deb ... 252s Unpacking r-cran-xtable (1:1.8-4-2) ... 252s Selecting previously unselected package r-bioc-annotate. 252s Preparing to unpack .../184-r-bioc-annotate_1.84.0+dfsg-2_all.deb ... 252s Unpacking r-bioc-annotate (1.84.0+dfsg-2) ... 252s Selecting previously unselected package r-bioc-genomicranges. 252s Preparing to unpack .../185-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 252s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 252s Selecting previously unselected package r-cran-lazyeval. 252s Preparing to unpack .../186-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 252s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 252s Selecting previously unselected package r-bioc-annotationfilter. 252s Preparing to unpack .../187-r-bioc-annotationfilter_1.30.0+dfsg-2_all.deb ... 252s Unpacking r-bioc-annotationfilter (1.30.0+dfsg-2) ... 252s Selecting previously unselected package r-cran-generics. 252s Preparing to unpack .../188-r-cran-generics_0.1.3-1_all.deb ... 252s Unpacking r-cran-generics (0.1.3-1) ... 252s Selecting previously unselected package r-cran-magrittr. 252s Preparing to unpack .../189-r-cran-magrittr_2.0.3-1_amd64.deb ... 252s Unpacking r-cran-magrittr (2.0.3-1) ... 252s Selecting previously unselected package r-cran-utf8. 252s Preparing to unpack .../190-r-cran-utf8_1.2.4-1_amd64.deb ... 252s Unpacking r-cran-utf8 (1.2.4-1) ... 252s Selecting previously unselected package r-cran-pillar. 252s Preparing to unpack .../191-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 252s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 252s Selecting previously unselected package r-cran-fansi. 252s Preparing to unpack .../192-r-cran-fansi_1.0.5-1_amd64.deb ... 252s Unpacking r-cran-fansi (1.0.5-1) ... 252s Selecting previously unselected package r-cran-tibble. 252s Preparing to unpack .../193-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 252s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 252s Selecting previously unselected package r-cran-withr. 252s Preparing to unpack .../194-r-cran-withr_3.0.2+dfsg-1_all.deb ... 252s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 252s Selecting previously unselected package r-cran-tidyselect. 252s Preparing to unpack .../195-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 252s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 252s Selecting previously unselected package r-cran-dplyr. 252s Preparing to unpack .../196-r-cran-dplyr_1.1.4-4_amd64.deb ... 252s Unpacking r-cran-dplyr (1.1.4-4) ... 252s Selecting previously unselected package r-cran-purrr. 252s Preparing to unpack .../197-r-cran-purrr_1.0.4-1_amd64.deb ... 252s Unpacking r-cran-purrr (1.0.4-1) ... 252s Selecting previously unselected package r-cran-stringi. 252s Preparing to unpack .../198-r-cran-stringi_1.8.4-1build1_amd64.deb ... 252s Unpacking r-cran-stringi (1.8.4-1build1) ... 252s Selecting previously unselected package r-cran-stringr. 252s Preparing to unpack .../199-r-cran-stringr_1.5.1-1_all.deb ... 252s Unpacking r-cran-stringr (1.5.1-1) ... 252s Selecting previously unselected package r-cran-tidyr. 252s Preparing to unpack .../200-r-cran-tidyr_1.3.1-1_amd64.deb ... 252s Unpacking r-cran-tidyr (1.3.1-1) ... 252s Selecting previously unselected package r-cran-dbplyr. 252s Preparing to unpack .../201-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ... 252s Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ... 253s Selecting previously unselected package r-cran-filelock. 253s Preparing to unpack .../202-r-cran-filelock_1.0.3-1_amd64.deb ... 253s Unpacking r-cran-filelock (1.0.3-1) ... 253s Selecting previously unselected package r-bioc-biocfilecache. 253s Preparing to unpack .../203-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 253s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 253s Selecting previously unselected package r-bioc-biocio. 253s Preparing to unpack .../204-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 253s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 253s Selecting previously unselected package r-cran-formatr. 253s Preparing to unpack .../205-r-cran-formatr_1.14-2_all.deb ... 253s Unpacking r-cran-formatr (1.14-2) ... 253s Selecting previously unselected package r-cran-lambda.r. 253s Preparing to unpack .../206-r-cran-lambda.r_1.2.4-2build1_all.deb ... 253s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 253s Selecting previously unselected package r-cran-futile.options. 253s Preparing to unpack .../207-r-cran-futile.options_1.0.1-3build1_all.deb ... 253s Unpacking r-cran-futile.options (1.0.1-3build1) ... 253s Selecting previously unselected package r-cran-futile.logger. 253s Preparing to unpack .../208-r-cran-futile.logger_1.4.3-4build1_all.deb ... 253s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 253s Selecting previously unselected package r-cran-snow. 253s Preparing to unpack .../209-r-cran-snow_1%3a0.4.4-2_all.deb ... 253s Unpacking r-cran-snow (1:0.4.4-2) ... 253s Selecting previously unselected package r-cran-codetools. 253s Preparing to unpack .../210-r-cran-codetools_0.2-20-1_all.deb ... 253s Unpacking r-cran-codetools (0.2-20-1) ... 253s Selecting previously unselected package r-cran-bh. 253s Preparing to unpack .../211-r-cran-bh_1.84.0-1_all.deb ... 253s Unpacking r-cran-bh (1.84.0-1) ... 253s Selecting previously unselected package r-bioc-biocparallel. 253s Preparing to unpack .../212-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 253s Unpacking r-bioc-biocparallel (1.40.0-2) ... 253s Selecting previously unselected package r-cran-base64enc. 253s Preparing to unpack .../213-r-cran-base64enc_0.1-3-3_amd64.deb ... 253s Unpacking r-cran-base64enc (0.1-3-3) ... 253s Selecting previously unselected package r-cran-digest. 253s Preparing to unpack .../214-r-cran-digest_0.6.37-1_amd64.deb ... 253s Unpacking r-cran-digest (0.6.37-1) ... 253s Selecting previously unselected package r-cran-htmltools. 253s Preparing to unpack .../215-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 253s Unpacking r-cran-htmltools (0.5.8.1-1) ... 253s Selecting previously unselected package r-cran-evaluate. 253s Preparing to unpack .../216-r-cran-evaluate_1.0.3-1_all.deb ... 253s Unpacking r-cran-evaluate (1.0.3-1) ... 253s Selecting previously unselected package r-cran-xfun. 253s Preparing to unpack .../217-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 253s Unpacking r-cran-xfun (0.51+dfsg-1) ... 253s Selecting previously unselected package r-cran-highr. 253s Preparing to unpack .../218-r-cran-highr_0.11+dfsg-1_all.deb ... 253s Unpacking r-cran-highr (0.11+dfsg-1) ... 253s Selecting previously unselected package r-cran-yaml. 253s Preparing to unpack .../219-r-cran-yaml_2.3.10-1_amd64.deb ... 253s Unpacking r-cran-yaml (2.3.10-1) ... 253s Selecting previously unselected package libjs-mathjax. 253s Preparing to unpack .../220-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 253s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 254s Selecting previously unselected package r-cran-knitr. 254s Preparing to unpack .../221-r-cran-knitr_1.49+dfsg-1_all.deb ... 254s Unpacking r-cran-knitr (1.49+dfsg-1) ... 254s Selecting previously unselected package r-cran-jquerylib. 254s Preparing to unpack .../222-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 254s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 254s Selecting previously unselected package r-cran-fs. 254s Preparing to unpack .../223-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 254s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 254s Selecting previously unselected package r-cran-rappdirs. 254s Preparing to unpack .../224-r-cran-rappdirs_0.3.3-1_amd64.deb ... 254s Unpacking r-cran-rappdirs (0.3.3-1) ... 254s Selecting previously unselected package r-cran-sass. 254s Preparing to unpack .../225-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 254s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 254s Selecting previously unselected package r-cran-bslib. 254s Preparing to unpack .../226-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 254s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 254s Selecting previously unselected package r-cran-fontawesome. 254s Preparing to unpack .../227-r-cran-fontawesome_0.5.3-1_all.deb ... 254s Unpacking r-cran-fontawesome (0.5.3-1) ... 254s Selecting previously unselected package r-cran-tinytex. 254s Preparing to unpack .../228-r-cran-tinytex_0.56-1_all.deb ... 254s Unpacking r-cran-tinytex (0.56-1) ... 254s Selecting previously unselected package libjs-modernizr. 254s Preparing to unpack .../229-libjs-modernizr_3.13.0-0.1_all.deb ... 254s Unpacking libjs-modernizr (3.13.0-0.1) ... 254s Selecting previously unselected package r-cran-pkgkitten. 254s Preparing to unpack .../230-r-cran-pkgkitten_0.2.4-1_all.deb ... 254s Unpacking r-cran-pkgkitten (0.2.4-1) ... 254s Selecting previously unselected package r-cran-rcpp. 255s Preparing to unpack .../231-r-cran-rcpp_1.0.14-1_amd64.deb ... 255s Unpacking r-cran-rcpp (1.0.14-1) ... 255s Selecting previously unselected package r-cran-later. 255s Preparing to unpack .../232-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 255s Unpacking r-cran-later (1.4.1+dfsg-1) ... 255s Selecting previously unselected package r-cran-promises. 255s Preparing to unpack .../233-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 255s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 255s Selecting previously unselected package r-cran-httpuv. 255s Preparing to unpack .../234-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 255s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 255s Selecting previously unselected package r-cran-sourcetools. 255s Preparing to unpack .../235-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 255s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 255s Selecting previously unselected package r-cran-commonmark. 255s Preparing to unpack .../236-r-cran-commonmark_1.9.2-2_amd64.deb ... 255s Unpacking r-cran-commonmark (1.9.2-2) ... 255s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 255s Preparing to unpack .../237-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 255s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 255s Selecting previously unselected package r-cran-shiny. 255s Preparing to unpack .../238-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 255s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 255s Selecting previously unselected package r-cran-rmarkdown. 255s Preparing to unpack .../239-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 255s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 255s Selecting previously unselected package r-cran-bookdown. 255s Preparing to unpack .../240-r-cran-bookdown_0.42+dfsg-1_all.deb ... 255s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 255s Selecting previously unselected package r-cran-biocmanager. 255s Preparing to unpack .../241-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 255s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 255s Selecting previously unselected package tex-common. 255s Preparing to unpack .../242-tex-common_6.19_all.deb ... 255s Unpacking tex-common (6.19) ... 255s Selecting previously unselected package t1utils. 255s Preparing to unpack .../243-t1utils_1.41-4build3_amd64.deb ... 255s Unpacking t1utils (1.41-4build3) ... 255s Selecting previously unselected package texlive-binaries. 255s Preparing to unpack .../244-texlive-binaries_2024.20240313.70630+ds-6_amd64.deb ... 255s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ... 256s Selecting previously unselected package texlive-base. 256s Preparing to unpack .../245-texlive-base_2024.20250114-1_all.deb ... 256s Unpacking texlive-base (2024.20250114-1) ... 257s Selecting previously unselected package texlive-latex-base. 257s Preparing to unpack .../246-texlive-latex-base_2024.20250114-1_all.deb ... 257s Unpacking texlive-latex-base (2024.20250114-1) ... 257s Selecting previously unselected package texlive-bibtex-extra. 257s Preparing to unpack .../247-texlive-bibtex-extra_2024.20250114-1_all.deb ... 257s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 259s Selecting previously unselected package r-bioc-biocversion. 259s Preparing to unpack .../248-r-bioc-biocversion_3.20.0-2_all.deb ... 259s Unpacking r-bioc-biocversion (3.20.0-2) ... 259s Selecting previously unselected package r-bioc-biocstyle. 259s Preparing to unpack .../249-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 259s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 259s Selecting previously unselected package r-cran-hms. 259s Preparing to unpack .../250-r-cran-hms_1.1.3-1_all.deb ... 259s Unpacking r-cran-hms (1.1.3-1) ... 259s Selecting previously unselected package r-cran-prettyunits. 259s Preparing to unpack .../251-r-cran-prettyunits_1.2.0-1_all.deb ... 259s Unpacking r-cran-prettyunits (1.2.0-1) ... 259s Selecting previously unselected package r-cran-progress. 259s Preparing to unpack .../252-r-cran-progress_1.2.3-1_all.deb ... 259s Unpacking r-cran-progress (1.2.3-1) ... 259s Selecting previously unselected package r-cran-httr2. 259s Preparing to unpack .../253-r-cran-httr2_1.1.1-1_all.deb ... 259s Unpacking r-cran-httr2 (1.1.1-1) ... 259s Selecting previously unselected package r-cran-xml2. 259s Preparing to unpack .../254-r-cran-xml2_1.3.7-1_amd64.deb ... 259s Unpacking r-cran-xml2 (1.3.7-1) ... 259s Selecting previously unselected package r-bioc-biomart. 259s Preparing to unpack .../255-r-bioc-biomart_2.62.1+dfsg-1_all.deb ... 259s Unpacking r-bioc-biomart (2.62.1+dfsg-1) ... 259s Selecting previously unselected package r-cran-farver. 259s Preparing to unpack .../256-r-cran-farver_2.1.2-1_amd64.deb ... 259s Unpacking r-cran-farver (2.1.2-1) ... 259s Selecting previously unselected package r-cran-labeling. 259s Preparing to unpack .../257-r-cran-labeling_0.4.3-1_all.deb ... 259s Unpacking r-cran-labeling (0.4.3-1) ... 259s Selecting previously unselected package r-cran-colorspace. 259s Preparing to unpack .../258-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 259s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 259s Selecting previously unselected package r-cran-munsell. 259s Preparing to unpack .../259-r-cran-munsell_0.5.1-1_all.deb ... 259s Unpacking r-cran-munsell (0.5.1-1) ... 259s Selecting previously unselected package r-cran-rcolorbrewer. 259s Preparing to unpack .../260-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 259s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 259s Selecting previously unselected package r-cran-viridislite. 259s Preparing to unpack .../261-r-cran-viridislite_0.4.2-2_all.deb ... 259s Unpacking r-cran-viridislite (0.4.2-2) ... 259s Selecting previously unselected package r-cran-scales. 259s Preparing to unpack .../262-r-cran-scales_1.3.0-1_all.deb ... 259s Unpacking r-cran-scales (1.3.0-1) ... 259s Selecting previously unselected package r-cran-gtable. 259s Preparing to unpack .../263-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 259s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 259s Selecting previously unselected package r-cran-isoband. 259s Preparing to unpack .../264-r-cran-isoband_0.2.7-1_amd64.deb ... 259s Unpacking r-cran-isoband (0.2.7-1) ... 259s Selecting previously unselected package r-cran-mass. 260s Preparing to unpack .../265-r-cran-mass_7.3-64-1_amd64.deb ... 260s Unpacking r-cran-mass (7.3-64-1) ... 260s Selecting previously unselected package r-cran-lattice. 260s Preparing to unpack .../266-r-cran-lattice_0.22-6-1_amd64.deb ... 260s Unpacking r-cran-lattice (0.22-6-1) ... 260s Selecting previously unselected package r-cran-nlme. 260s Preparing to unpack .../267-r-cran-nlme_3.1.167-1_amd64.deb ... 260s Unpacking r-cran-nlme (3.1.167-1) ... 260s Selecting previously unselected package r-cran-matrix. 260s Preparing to unpack .../268-r-cran-matrix_1.7-3-1_amd64.deb ... 260s Unpacking r-cran-matrix (1.7-3-1) ... 260s Selecting previously unselected package r-cran-mgcv. 260s Preparing to unpack .../269-r-cran-mgcv_1.9-1-1_amd64.deb ... 260s Unpacking r-cran-mgcv (1.9-1-1) ... 260s Selecting previously unselected package r-cran-ggplot2. 260s Preparing to unpack .../270-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 260s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 260s Selecting previously unselected package r-cran-cluster. 260s Preparing to unpack .../271-r-cran-cluster_2.1.8.1-1_amd64.deb ... 260s Unpacking r-cran-cluster (2.1.8.1-1) ... 260s Selecting previously unselected package r-cran-survival. 260s Preparing to unpack .../272-r-cran-survival_3.8-3-1_amd64.deb ... 260s Unpacking r-cran-survival (3.8-3-1) ... 260s Selecting previously unselected package r-cran-rpart. 260s Preparing to unpack .../273-r-cran-rpart_4.1.24-1_amd64.deb ... 260s Unpacking r-cran-rpart (4.1.24-1) ... 260s Selecting previously unselected package r-cran-nnet. 260s Preparing to unpack .../274-r-cran-nnet_7.3-20-1_amd64.deb ... 260s Unpacking r-cran-nnet (7.3-20-1) ... 260s Selecting previously unselected package r-cran-foreign. 260s Preparing to unpack .../275-r-cran-foreign_0.8.88-1_amd64.deb ... 260s Unpacking r-cran-foreign (0.8.88-1) ... 260s Selecting previously unselected package r-cran-gridextra. 260s Preparing to unpack .../276-r-cran-gridextra_2.3-3build1_all.deb ... 260s Unpacking r-cran-gridextra (2.3-3build1) ... 260s Selecting previously unselected package r-cran-data.table. 260s Preparing to unpack .../277-r-cran-data.table_1.17.0+dfsg-1_amd64.deb ... 260s Unpacking r-cran-data.table (1.17.0+dfsg-1) ... 260s Selecting previously unselected package r-cran-backports. 260s Preparing to unpack .../278-r-cran-backports_1.5.0-2_amd64.deb ... 260s Unpacking r-cran-backports (1.5.0-2) ... 260s Selecting previously unselected package r-cran-checkmate. 260s Preparing to unpack .../279-r-cran-checkmate_2.3.2-1_amd64.deb ... 260s Unpacking r-cran-checkmate (2.3.2-1) ... 260s Selecting previously unselected package r-cran-htmlwidgets. 260s Preparing to unpack .../280-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 260s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 261s Selecting previously unselected package r-cran-rstudioapi. 261s Preparing to unpack .../281-r-cran-rstudioapi_0.17.1-1_all.deb ... 261s Unpacking r-cran-rstudioapi (0.17.1-1) ... 261s Selecting previously unselected package r-cran-htmltable. 261s Preparing to unpack .../282-r-cran-htmltable_2.4.3-1_all.deb ... 261s Unpacking r-cran-htmltable (2.4.3-1) ... 261s Selecting previously unselected package r-cran-viridis. 261s Preparing to unpack .../283-r-cran-viridis_0.6.5-1_all.deb ... 261s Unpacking r-cran-viridis (0.6.5-1) ... 261s Selecting previously unselected package r-cran-formula. 261s Preparing to unpack .../284-r-cran-formula_1.2-5-1_all.deb ... 261s Unpacking r-cran-formula (1.2-5-1) ... 261s Selecting previously unselected package r-cran-chron. 261s Preparing to unpack .../285-r-cran-chron_2.3-62-1_amd64.deb ... 261s Unpacking r-cran-chron (2.3-62-1) ... 261s Selecting previously unselected package r-cran-jpeg. 261s Preparing to unpack .../286-r-cran-jpeg_0.1-10-1_amd64.deb ... 261s Unpacking r-cran-jpeg (0.1-10-1) ... 261s Selecting previously unselected package r-cran-deldir. 261s Preparing to unpack .../287-r-cran-deldir_2.0-4-1build1_amd64.deb ... 261s Unpacking r-cran-deldir (2.0-4-1build1) ... 261s Selecting previously unselected package r-cran-rcppeigen. 261s Preparing to unpack .../288-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 261s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 261s Selecting previously unselected package r-cran-interp. 261s Preparing to unpack .../289-r-cran-interp_1.1-6-1_amd64.deb ... 261s Unpacking r-cran-interp (1.1-6-1) ... 261s Selecting previously unselected package r-cran-latticeextra. 261s Preparing to unpack .../290-r-cran-latticeextra_0.6-30-1_all.deb ... 261s Unpacking r-cran-latticeextra (0.6-30-1) ... 261s Selecting previously unselected package r-cran-acepack. 261s Preparing to unpack .../291-r-cran-acepack_1.6.1-1_amd64.deb ... 261s Unpacking r-cran-acepack (1.6.1-1) ... 261s Selecting previously unselected package r-cran-hmisc. 261s Preparing to unpack .../292-r-cran-hmisc_5.2-2-1_amd64.deb ... 261s Unpacking r-cran-hmisc (5.2-2-1) ... 261s Selecting previously unselected package r-cran-dichromat. 261s Preparing to unpack .../293-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 261s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 261s Selecting previously unselected package r-cran-matrixstats. 261s Preparing to unpack .../294-r-cran-matrixstats_1.5.0-1_amd64.deb ... 261s Unpacking r-cran-matrixstats (1.5.0-1) ... 261s Selecting previously unselected package r-bioc-matrixgenerics. 261s Preparing to unpack .../295-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 261s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 261s Selecting previously unselected package r-cran-abind. 261s Preparing to unpack .../296-r-cran-abind_1.4-8-1_all.deb ... 261s Unpacking r-cran-abind (1.4-8-1) ... 261s Selecting previously unselected package r-bioc-s4arrays. 261s Preparing to unpack .../297-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 261s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 261s Selecting previously unselected package r-bioc-sparsearray. 261s Preparing to unpack .../298-r-bioc-sparsearray_1.6.2+dfsg-1_amd64.deb ... 261s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 262s Selecting previously unselected package r-bioc-delayedarray. 262s Preparing to unpack .../299-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 262s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 262s Selecting previously unselected package r-bioc-summarizedexperiment. 262s Preparing to unpack .../300-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 262s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 262s Selecting previously unselected package r-cran-bitops. 262s Preparing to unpack .../301-r-cran-bitops_1.0-9-1_amd64.deb ... 262s Unpacking r-cran-bitops (1.0-9-1) ... 262s Selecting previously unselected package r-bioc-rhtslib. 262s Preparing to unpack .../302-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ... 262s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 262s Selecting previously unselected package r-bioc-rsamtools. 262s Preparing to unpack .../303-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ... 262s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 262s Selecting previously unselected package r-bioc-genomicalignments. 262s Preparing to unpack .../304-r-bioc-genomicalignments_1.42.0-2_amd64.deb ... 262s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 262s Selecting previously unselected package r-cran-rcurl. 262s Preparing to unpack .../305-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 262s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 262s Selecting previously unselected package r-cran-rjson. 262s Preparing to unpack .../306-r-cran-rjson_0.2.23-1_amd64.deb ... 262s Unpacking r-cran-rjson (0.2.23-1) ... 262s Selecting previously unselected package r-cran-restfulr. 262s Preparing to unpack .../307-r-cran-restfulr_0.0.15-1_amd64.deb ... 262s Unpacking r-cran-restfulr (0.0.15-1) ... 262s Selecting previously unselected package r-bioc-rtracklayer. 262s Preparing to unpack .../308-r-bioc-rtracklayer_1.66.0-2_amd64.deb ... 262s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 262s Selecting previously unselected package r-bioc-genomicfeatures. 262s Preparing to unpack .../309-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ... 262s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 262s Selecting previously unselected package r-bioc-bsgenome. 262s Preparing to unpack .../310-r-bioc-bsgenome_1.74.0-2_all.deb ... 262s Unpacking r-bioc-bsgenome (1.74.0-2) ... 262s Selecting previously unselected package r-bioc-variantannotation. 262s Preparing to unpack .../311-r-bioc-variantannotation_1.52.0-2_amd64.deb ... 262s Unpacking r-bioc-variantannotation (1.52.0-2) ... 262s Selecting previously unselected package r-bioc-protgenerics. 262s Preparing to unpack .../312-r-bioc-protgenerics_1.38.0-2_all.deb ... 262s Unpacking r-bioc-protgenerics (1.38.0-2) ... 262s Selecting previously unselected package r-bioc-ensembldb. 262s Preparing to unpack .../313-r-bioc-ensembldb_2.30.0+dfsg-3_all.deb ... 262s Unpacking r-bioc-ensembldb (2.30.0+dfsg-3) ... 262s Selecting previously unselected package r-bioc-biovizbase. 262s Preparing to unpack .../314-r-bioc-biovizbase_1.54.0-2_amd64.deb ... 262s Unpacking r-bioc-biovizbase (1.54.0-2) ... 262s Selecting previously unselected package r-bioc-pwalign. 262s Preparing to unpack .../315-r-bioc-pwalign_1.2.0-2_amd64.deb ... 262s Unpacking r-bioc-pwalign (1.2.0-2) ... 263s Selecting previously unselected package r-cran-clipr. 263s Preparing to unpack .../316-r-cran-clipr_0.8.0-1_all.deb ... 263s Unpacking r-cran-clipr (0.8.0-1) ... 263s Selecting previously unselected package r-cran-tzdb. 263s Preparing to unpack .../317-r-cran-tzdb_0.4.0-2_amd64.deb ... 263s Unpacking r-cran-tzdb (0.4.0-2) ... 263s Selecting previously unselected package r-cran-vroom. 263s Preparing to unpack .../318-r-cran-vroom_1.6.5-1_amd64.deb ... 263s Unpacking r-cran-vroom (1.6.5-1) ... 263s Selecting previously unselected package r-cran-readr. 263s Preparing to unpack .../319-r-cran-readr_2.1.5-1_amd64.deb ... 263s Unpacking r-cran-readr (2.1.5-1) ... 263s Selecting previously unselected package r-cran-plyr. 263s Preparing to unpack .../320-r-cran-plyr_1.8.9-1_amd64.deb ... 263s Unpacking r-cran-plyr (1.8.9-1) ... 263s Selecting previously unselected package r-cran-reshape2. 263s Preparing to unpack .../321-r-cran-reshape2_1.4.4-2build1_amd64.deb ... 263s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 263s Selecting previously unselected package r-cran-pracma. 263s Preparing to unpack .../322-r-cran-pracma_2.4.4-3_all.deb ... 263s Unpacking r-cran-pracma (2.4.4-3) ... 263s Selecting previously unselected package r-cran-powerlaw. 263s Preparing to unpack .../323-r-cran-powerlaw_1.0.0-1_all.deb ... 263s Unpacking r-cran-powerlaw (1.0.0-1) ... 263s Selecting previously unselected package r-bioc-go.db. 263s Preparing to unpack .../324-r-bioc-go.db_3.20.0-2_all.deb ... 263s Unpacking r-bioc-go.db (3.20.0-2) ... 263s Selecting previously unselected package r-cran-r.methodss3. 263s Preparing to unpack .../325-r-cran-r.methodss3_1.8.2-1_all.deb ... 263s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 263s Selecting previously unselected package r-cran-r.oo. 263s Preparing to unpack .../326-r-cran-r.oo_1.27.0-1_all.deb ... 263s Unpacking r-cran-r.oo (1.27.0-1) ... 263s Selecting previously unselected package r-cran-r.utils. 263s Preparing to unpack .../327-r-cran-r.utils_2.13.0-1_all.deb ... 263s Unpacking r-cran-r.utils (2.13.0-1) ... 263s Selecting previously unselected package r-bioc-cner. 263s Preparing to unpack .../328-r-bioc-cner_1.42.0+dfsg-2_amd64.deb ... 263s Unpacking r-bioc-cner (1.42.0+dfsg-2) ... 264s Selecting previously unselected package r-bioc-gviz. 264s Preparing to unpack .../329-r-bioc-gviz_1.50.0+dfsg-2_all.deb ... 264s Unpacking r-bioc-gviz (1.50.0+dfsg-2) ... 264s Selecting previously unselected package r-cran-brio. 264s Preparing to unpack .../330-r-cran-brio_1.1.5-1_amd64.deb ... 264s Unpacking r-cran-brio (1.1.5-1) ... 264s Selecting previously unselected package r-cran-ps. 264s Preparing to unpack .../331-r-cran-ps_1.9.0-1_amd64.deb ... 264s Unpacking r-cran-ps (1.9.0-1) ... 264s Selecting previously unselected package r-cran-processx. 264s Preparing to unpack .../332-r-cran-processx_3.8.6-1_amd64.deb ... 264s Unpacking r-cran-processx (3.8.6-1) ... 264s Selecting previously unselected package r-cran-callr. 264s Preparing to unpack .../333-r-cran-callr_3.7.6-1_all.deb ... 264s Unpacking r-cran-callr (3.7.6-1) ... 264s Selecting previously unselected package r-cran-desc. 264s Preparing to unpack .../334-r-cran-desc_1.4.3-1_all.deb ... 264s Unpacking r-cran-desc (1.4.3-1) ... 264s Selecting previously unselected package r-cran-diffobj. 264s Preparing to unpack .../335-r-cran-diffobj_0.3.5-1_amd64.deb ... 264s Unpacking r-cran-diffobj (0.3.5-1) ... 264s Selecting previously unselected package r-cran-pkgbuild. 264s Preparing to unpack .../336-r-cran-pkgbuild_1.4.6-1_all.deb ... 264s Unpacking 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r-bioc-annotationfilter (1.30.0+dfsg-2) ... 270s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 270s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 270s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 270s Setting up r-cran-bookdown (0.42+dfsg-1) ... 270s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 270s Setting up r-bioc-pwalign (1.2.0-2) ... 270s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 270s Setting up r-bioc-annotationdbi (1.68.0-2) ... 270s Setting up r-bioc-go.db (3.20.0-2) ... 270s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 270s Setting up r-bioc-annotate (1.84.0+dfsg-2) ... 270s Setting up r-bioc-biomart (2.62.1+dfsg-1) ... 270s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 270s Setting up r-bioc-genomicalignments (1.42.0-2) ... 270s Setting up r-bioc-rtracklayer (1.66.0-2) ... 270s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 270s Setting up r-cran-htmltable (2.4.3-1) ... 270s Setting up r-bioc-cner (1.42.0+dfsg-2) ... 270s Setting up r-bioc-bsgenome (1.74.0-2) ... 270s Setting up r-bioc-ensembldb (2.30.0+dfsg-3) ... 270s Setting up r-cran-hmisc (5.2-2-1) ... 270s Setting up r-bioc-variantannotation (1.52.0-2) ... 270s Setting up r-bioc-biovizbase (1.54.0-2) ... 270s Setting up r-bioc-gviz (1.50.0+dfsg-2) ... 270s Processing triggers for libc-bin (2.41-1ubuntu2) ... 270s Processing triggers for man-db (2.13.0-1) ... 272s Processing triggers for install-info (7.1.1-1) ... 272s Processing triggers for tex-common (6.19) ... 272s Running updmap-sys. This may take some time... done. 272s Running mktexlsr /var/lib/texmf ... done. 272s Building format(s) --all. 300s This may take some time... done. 302s autopkgtest [22:02:20]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 302s autopkgtest [22:02:20]: test pkg-r-autopkgtest: [----------------------- 302s Test: Try to load the R library CNEr 302s 302s R version 4.4.3 (2025-02-28) -- "Trophy Case" 302s Copyright (C) 2025 The R Foundation for Statistical Computing 302s Platform: x86_64-pc-linux-gnu 302s 302s R is free software and comes with ABSOLUTELY NO WARRANTY. 302s You are welcome to redistribute it under certain conditions. 302s Type 'license()' or 'licence()' for distribution details. 302s 302s R is a collaborative project with many contributors. 302s Type 'contributors()' for more information and 302s 'citation()' on how to cite R or R packages in publications. 302s 302s Type 'demo()' for some demos, 'help()' for on-line help, or 302s 'help.start()' for an HTML browser interface to help. 302s Type 'q()' to quit R. 302s 302s > library('CNEr') 312s 312s > 312s > 312s Other tests are currently unsupported! 312s They will be progressively added. 313s autopkgtest [22:02:31]: test pkg-r-autopkgtest: -----------------------] 313s pkg-r-autopkgtest PASS 313s autopkgtest [22:02:31]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 313s autopkgtest [22:02:31]: @@@@@@@@@@@@@@@@@@@@ summary 313s pkg-r-autopkgtest PASS 331s nova [W] Skipping flock for amd64 331s Creating nova instance adt-plucky-amd64-r-bioc-cner-20250315-215718-juju-7f2275-prod-proposed-migration-environment-2-cf92165b-a047-4edc-8bc6-637f64869216 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 331s nova [W] Timed out waiting for ac29ed6a-7c20-46e6-a1d7-3d01b0601562 to get deleted.