0s autopkgtest [21:57:16]: starting date and time: 2025-03-15 21:57:16+0000
  0s autopkgtest [21:57:16]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [21:57:16]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.tx3a23i_/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-chemminer --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@lcy02-3.secgroup --name adt-plucky-amd64-r-bioc-chemminer-20250315-215716-juju-7f2275-prod-proposed-migration-environment-15-0131419d-e969-438d-9fb6-15360c900454 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 49s autopkgtest [21:58:05]: testbed dpkg architecture: amd64
 49s autopkgtest [21:58:05]: testbed apt version: 2.9.31ubuntu1
 49s autopkgtest [21:58:05]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 49s autopkgtest [21:58:05]: testbed release detected to be: None
 49s autopkgtest [21:58:05]: updating testbed package index (apt update)
 49s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
 49s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 49s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 49s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 50s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB]
 50s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB]
 50s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB]
 50s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB]
 50s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB]
 50s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B]
 50s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B]
 50s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB]
 50s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB]
 50s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB]
 50s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B]
 50s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB]
 50s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B]
 50s Fetched 1265 kB in 0s (5484 kB/s)
 51s Reading package lists...
 51s + lsb_release --codename --short
 51s + RELEASE=plucky
 51s + cat
 51s + [ plucky != trusty ]
 51s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade
 51s Reading package lists...
 51s Building dependency tree...
 51s Reading state information...
 52s Calculating upgrade...
 52s Calculating upgrade...
 52s The following package was automatically installed and is no longer required:
 52s   libnl-genl-3-200
 52s Use 'sudo apt autoremove' to remove it.
 52s The following NEW packages will be installed:
 52s   bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10
 52s   linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic
 52s   linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic
 52s   linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids
 52s The following packages will be upgraded:
 52s   apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu
 52s   cloud-init cloud-init-base curl dosfstools fwupd gir1.2-girepository-2.0
 52s   gir1.2-glib-2.0 htop hwdata libapparmor1 libapt-pkg7.0 libaudit-common
 52s   libaudit1 libbinutils libbrotli1 libcap-ng0 libctf-nobfd0 libctf0
 52s   libcurl3t64-gnutls libcurl4t64 libestr0 libfwupd3 libgirepository-1.0-1
 52s   libglib2.0-0t64 libglib2.0-data libgprofng0 libjemalloc2 liblz4-1 liblzma5
 52s   libmm-glib0 libncurses6 libncursesw6 libnl-3-200 libnl-genl-3-200
 52s   libnl-route-3-200 libpci3 libpython3-stdlib libpython3.13
 52s   libpython3.13-minimal libpython3.13-stdlib libselinux1 libsframe1
 52s   libsqlite3-0 libtinfo6 libxml2 linux-firmware linux-generic
 52s   linux-headers-generic linux-headers-virtual linux-image-generic
 52s   linux-image-virtual linux-libc-dev linux-tools-common linux-virtual
 52s   media-types ncurses-base ncurses-bin ncurses-term pci.ids pciutils
 52s   pinentry-curses python-apt-common python3 python3-apt python3-cffi-backend
 52s   python3-dbus python3-gi python3-jinja2 python3-lazr.uri python3-markupsafe
 52s   python3-minimal python3-systemd python3-yaml python3.13 python3.13-gdbm
 52s   python3.13-minimal rsync rsyslog strace xz-utils
 52s 86 upgraded, 12 newly installed, 0 to remove and 0 not upgraded.
 52s Need to get 807 MB of archives.
 52s After this operation, 326 MB of additional disk space will be used.
 52s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB]
 52s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB]
 52s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB]
 52s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB]
 52s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB]
 52s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB]
 52s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB]
 52s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB]
 52s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB]
 52s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB]
 52s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB]
 53s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB]
 53s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB]
 53s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB]
 53s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB]
 53s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB]
 53s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB]
 53s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB]
 53s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB]
 53s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB]
 53s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB]
 53s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB]
 53s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB]
 53s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B]
 53s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB]
 53s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB]
 53s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB]
 53s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB]
 53s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB]
 53s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB]
 53s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB]
 53s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB]
 53s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B]
 53s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB]
 53s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB]
 53s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB]
 53s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB]
 53s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB]
 53s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB]
 53s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB]
 53s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB]
 53s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB]
 53s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB]
 53s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB]
 53s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB]
 53s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB]
 53s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB]
 53s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB]
 53s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB]
 53s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB]
 53s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB]
 53s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB]
 53s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB]
 53s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB]
 53s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB]
 53s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB]
 53s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB]
 53s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB]
 53s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB]
 53s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB]
 53s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B]
 53s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB]
 53s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB]
 53s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB]
 53s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB]
 53s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
 53s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB]
 53s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB]
 53s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB]
 53s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB]
 53s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB]
 53s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB]
 53s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB]
 53s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB]
 53s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB]
 53s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB]
 53s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB]
 53s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB]
 57s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB]
 57s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB]
 57s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB]
 58s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B]
 58s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB]
 58s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B]
 58s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB]
 58s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B]
 58s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB]
 58s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB]
 58s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB]
 58s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB]
 58s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB]
 58s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB]
 58s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B]
 58s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB]
 58s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB]
 58s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB]
 58s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB]
 58s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B]
 59s Preconfiguring packages ...
 59s Fetched 807 MB in 6s (137 MB/s)
 59s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 109138 files and directories currently installed.)
 59s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ...
 59s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ...
 59s Setting up ncurses-bin (6.5+20250216-2) ...
 59s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 109138 files and directories currently installed.)
 59s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ...
 59s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ...
 59s Setting up ncurses-base (6.5+20250216-2) ...
 59s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 109138 files and directories currently installed.)
 59s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ...
 59s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ...
 60s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ...
 60s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ...
 60s Setting up liblz4-1:amd64 (1.10.0-4) ...
 60s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 109138 files and directories currently installed.)
 60s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ...
 60s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ...
 60s Setting up liblzma5:amd64 (5.6.4-1) ...
 60s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 109138 files and directories currently installed.)
 60s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ...
 60s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ...
 60s Setting up libapt-pkg7.0:amd64 (2.9.33) ...
 60s (Reading database ... 
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 78s Installing new version of config file /etc/mime.types ...
 78s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ...
 78s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ...
 78s Setting up pci.ids (0.0~2025.03.09-1) ...
 78s Setting up apt-utils (2.9.33) ...
 78s Setting up libdebuginfod-common (0.192-4) ...
 78s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ...
 78s Setting up bpftool (7.6.0+6.14.0-10.10) ...
 78s Setting up libestr0:amd64 (0.1.11-2) ...
 78s Setting up libbrotli1:amd64 (1.1.0-2build4) ...
 78s Setting up libsqlite3-0:amd64 (3.46.1-2) ...
 78s Setting up dosfstools (4.2-1.2) ...
 78s Setting up rsyslog (8.2412.0-2ubuntu2) ...
 78s info: The user `syslog' is already a member of `adm'.
 79s Setting up binutils-common:amd64 (2.44-3ubuntu1) ...
 79s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ...
 79s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ...
 79s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ...
 79s Setting up linux-headers-generic (6.14.0-10.10) ...
 79s Setting up libjemalloc2:amd64 (5.3.0-3) ...
 79s Setting up libsframe1:amd64 (2.44-3ubuntu1) ...
 79s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ...
 79s Setting up apparmor (4.1.0~beta5-0ubuntu8) ...
 79s Installing new version of config file /etc/apparmor.d/openvpn ...
 80s Reloading AppArmor profiles 
 82s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ...
 82s No schema files found: doing nothing.
 82s Setting up libglib2.0-data (2.84.0-1) ...
 82s Setting up libncurses6:amd64 (6.5+20250216-2) ...
 82s Setting up strace (6.13+ds-1ubuntu1) ...
 82s Setting up xz-utils (5.6.4-1) ...
 82s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ...
 82s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ...
 84s Setting up libncursesw6:amd64 (6.5+20250216-2) ...
 84s Setting up libpci3:amd64 (1:3.13.0-2) ...
 84s Setting up python-apt-common (2.9.9build1) ...
 84s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ...
 84s Setting up pnp.ids (0.393-3) ...
 84s Setting up libnl-3-200:amd64 (3.7.0-1) ...
 84s Setting up python3.13-minimal (3.13.2-2) ...
 85s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ...
 85s Setting up libbinutils:amd64 (2.44-3ubuntu1) ...
 85s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ...
 85s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ...
 85s Setting up rsync (3.4.1+ds1-3) ...
 86s rsync.service is a disabled or a static unit not running, not starting it.
 86s Setting up python3.13-gdbm (3.13.2-2) ...
 86s Setting up libpython3-stdlib:amd64 (3.13.2-2) ...
 86s Setting up ncurses-term (6.5+20250216-2) ...
 86s Setting up libctf0:amd64 (2.44-3ubuntu1) ...
 86s Setting up libpython3.13:amd64 (3.13.2-2) ...
 86s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
 86s Setting up libdebuginfod1t64:amd64 (0.192-4) ...
 86s Setting up linux-headers-virtual (6.14.0-10.10) ...
 86s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ...
 86s Setting up python3.13 (3.13.2-2) ...
 87s Setting up htop (3.4.0-2) ...
 87s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ...
 89s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic
 89s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic
 89s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic
 89s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic
 89s Setting up libfwupd3:amd64 (2.0.6-4) ...
 89s Setting up python3 (3.13.2-2) ...
 90s Setting up python3-markupsafe (2.1.5-1build4) ...
 90s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ...
 92s Setting up libnl-route-3-200:amd64 (3.7.0-1) ...
 92s Setting up hwdata (0.393-3) ...
 92s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
 92s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ...
 92s Setting up linux-perf (6.14.0-10.10) ...
 92s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ...
 92s Setting up python3-gi (3.50.0-4build1) ...
 92s Setting up pciutils (1:3.13.0-2) ...
 92s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ...
 92s Setting up curl (8.12.1-3ubuntu1) ...
 92s Setting up linux-image-virtual (6.14.0-10.10) ...
 92s Setting up linux-tools-common (6.14.0-10.10) ...
 92s Setting up fwupd (2.0.6-4) ...
 93s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
 93s fwupd.service is a disabled or a static unit not running, not starting it.
 93s Setting up python3-systemd (235-1build6) ...
 93s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ...
 93s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ...
 93s Setting up linux-image-generic (6.14.0-10.10) ...
 93s Setting up python3-dbus (1.3.2-5build5) ...
 93s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ...
 93s Setting up linux-generic (6.14.0-10.10) ...
 93s Setting up python3-apt (2.9.9build1) ...
 93s Setting up python3-yaml (6.0.2-1build2) ...
 94s Setting up python3-lazr.uri (1.0.6-6) ...
 94s Setting up binutils (2.44-3ubuntu1) ...
 94s Setting up cloud-init-base (25.1-0ubuntu3) ...
 95s Setting up linux-virtual (6.14.0-10.10) ...
 95s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ...
 95s Setting up cloud-init (25.1-0ubuntu3) ...
 95s Processing triggers for systemd (257.3-1ubuntu3) ...
 95s Processing triggers for man-db (2.13.0-1) ...
 97s Processing triggers for dbus (1.16.2-1ubuntu1) ...
 97s Processing triggers for libc-bin (2.41-1ubuntu1) ...
 97s Processing triggers for initramfs-tools (0.146ubuntu1) ...
 97s update-initramfs: Generating /boot/initrd.img-6.12.0-16-generic
 97s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
109s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ...
109s /etc/kernel/postinst.d/initramfs-tools:
109s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic
109s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
120s /etc/kernel/postinst.d/zz-update-grub:
120s Sourcing file `/etc/default/grub'
120s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
120s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
120s Generating grub configuration file ...
120s Found linux image: /boot/vmlinuz-6.14.0-10-generic
120s Found initrd image: /boot/initrd.img-6.14.0-10-generic
120s Found linux image: /boot/vmlinuz-6.12.0-16-generic
120s Found initrd image: /boot/initrd.img-6.12.0-16-generic
120s Found linux image: /boot/vmlinuz-6.11.0-8-generic
120s Found initrd image: /boot/initrd.img-6.11.0-8-generic
121s Warning: os-prober will not be executed to detect other bootable partitions.
121s Systems on them will not be added to the GRUB boot configuration.
121s Check GRUB_DISABLE_OS_PROBER documentation entry.
121s Adding boot menu entry for UEFI Firmware Settings ...
121s done
121s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref
121s + /usr/lib/apt/apt-helper analyze-pattern ?true
121s + uname -r
121s + sed s/\./\\./g
121s + running_kernel_pattern=^linux-.*6\.12\.0-16-generic.*
121s + apt list ?obsolete
121s + tail -n+2
121s + cut -d/ -f1
121s + grep -v ^linux-.*6\.12\.0-16-generic.*
122s + obsolete_pkgs=linux-headers-6.11.0-8-generic
122s linux-headers-6.11.0-8
122s linux-headers-6.12.0-16
122s linux-image-6.11.0-8-generic
122s linux-modules-6.11.0-8-generic
122s linux-tools-6.11.0-8-generic
122s linux-tools-6.11.0-8
122s linux-tools-6.12.0-16
122s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-headers-6.12.0-16 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 linux-tools-6.12.0-16
122s Reading package lists...
123s Building dependency tree...
123s Reading state information...
123s Solving dependencies...
123s The following packages will be REMOVED:
123s   libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib*
123s   libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
123s   linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic*
123s   linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic*
123s   linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16*
123s   linux-tools-6.12.0-16-generic*
123s 0 upgraded, 0 newly installed, 15 to remove and 5 not upgraded.
123s After this operation, 371 MB disk space will be freed.
123s (Reading database ... 
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(Reading database ... 148643 files and directories currently installed.)
123s Removing libnl-genl-3-200:amd64 (3.7.0-1) ...
123s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
123s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
124s Removing libpython3.12t64:amd64 (3.12.9-1) ...
124s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ...
124s Removing libnsl2:amd64 (1.3.0-3build3) ...
124s Removing libpython3.12-minimal:amd64 (3.12.9-1) ...
124s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
124s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
127s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ...
127s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ...
129s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ...
129s /etc/kernel/postrm.d/initramfs-tools:
129s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic
130s /etc/kernel/postrm.d/zz-update-grub:
130s Sourcing file `/etc/default/grub'
130s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
130s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
130s Generating grub configuration file ...
130s Found linux image: /boot/vmlinuz-6.14.0-10-generic
130s Found initrd image: /boot/initrd.img-6.14.0-10-generic
130s Found linux image: /boot/vmlinuz-6.12.0-16-generic
130s Found initrd image: /boot/initrd.img-6.12.0-16-generic
130s Warning: os-prober will not be executed to detect other bootable partitions.
130s Systems on them will not be added to the GRUB boot configuration.
130s Check GRUB_DISABLE_OS_PROBER documentation entry.
130s Adding boot menu entry for UEFI Firmware Settings ...
130s done
130s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
130s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ...
130s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ...
131s Processing triggers for libc-bin (2.41-1ubuntu1) ...
131s (Reading database ... 
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(Reading database ... 84830 files and directories currently installed.)
131s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ...
131s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ...
131s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
131s + grep -q trusty /etc/lsb-release
131s + [ ! -d /usr/share/doc/unattended-upgrades ]
131s + [ ! -d /usr/share/doc/lxd ]
131s + [ ! -d /usr/share/doc/lxd-client ]
131s + [ ! -d /usr/share/doc/snapd ]
131s + type iptables
131s + cat
131s + chmod 755 /etc/rc.local
131s + . /etc/rc.local
131s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu
131s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP
131s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP
131s + uname -m
131s + [ x86_64 = ppc64le ]
131s + [ -d /run/systemd/system ]
131s + systemd-detect-virt --quiet --vm
131s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/
131s + cat
131s + grep -q lz4 /etc/initramfs-tools/initramfs.conf
131s + echo COMPRESS=lz4
131s autopkgtest [21:59:27]: upgrading testbed (apt dist-upgrade and autopurge)
131s Reading package lists...
131s Building dependency tree...
131s Reading state information...
132s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
132s Starting 2 pkgProblemResolver with broken count: 0
132s Done
132s Entering ResolveByKeep
133s 
133s Calculating upgrade...
133s The following packages will be upgraded:
133s   libc-bin libc-dev-bin libc6 libc6-dev locales
133s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
133s Need to get 10.5 MB of archives.
133s After this operation, 1024 B of additional disk space will be used.
133s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB]
133s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB]
133s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB]
133s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB]
133s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB]
133s Preconfiguring packages ...
134s Fetched 10.5 MB in 0s (56.3 MB/s)
134s (Reading database ... 
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(Reading database ... 84827 files and directories currently installed.)
134s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ...
134s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
134s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ...
134s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
134s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ...
134s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
134s Setting up libc6:amd64 (2.41-1ubuntu2) ...
135s (Reading database ... 
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(Reading database ... 84827 files and directories currently installed.)
135s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ...
135s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
135s Setting up libc-bin (2.41-1ubuntu2) ...
135s (Reading database ... 
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(Reading database ... 84827 files and directories currently installed.)
135s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
135s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
135s Setting up locales (2.41-1ubuntu2) ...
136s Generating locales (this might take a while)...
137s   en_US.UTF-8... done
137s Generation complete.
137s Setting up libc-dev-bin (2.41-1ubuntu2) ...
137s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ...
137s Processing triggers for man-db (2.13.0-1) ...
138s Processing triggers for systemd (257.3-1ubuntu3) ...
139s Reading package lists...
139s Building dependency tree...
139s Reading state information...
139s Starting pkgProblemResolver with broken count: 0
139s Starting 2 pkgProblemResolver with broken count: 0
139s Done
140s Solving dependencies...
140s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
140s autopkgtest [21:59:36]: rebooting testbed after setup commands that affected boot
144s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
156s autopkgtest [21:59:52]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025
157s autopkgtest [21:59:53]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-chemminer
158s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-chemminer 3.58.0+dfsg-2 (dsc) [2363 B]
158s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-chemminer 3.58.0+dfsg-2 (tar) [707 kB]
158s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-chemminer 3.58.0+dfsg-2 (diff) [6332 B]
158s gpgv: Signature made Sat Jan 11 19:37:32 2025 UTC
158s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
158s gpgv:                issuer "crusoe@debian.org"
158s gpgv: Can't check signature: No public key
158s dpkg-source: warning: cannot verify inline signature for ./r-bioc-chemminer_3.58.0+dfsg-2.dsc: no acceptable signature found
158s autopkgtest [21:59:54]: testing package r-bioc-chemminer version 3.58.0+dfsg-2
159s autopkgtest [21:59:55]: build not needed
166s autopkgtest [22:00:02]: test pkg-r-autopkgtest: preparing testbed
166s Reading package lists...
166s Building dependency tree...
166s Reading state information...
167s Starting pkgProblemResolver with broken count: 0
167s Starting 2 pkgProblemResolver with broken count: 0
167s Done
167s The following NEW packages will be installed:
167s   build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu
167s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
167s   fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
167s   g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14
167s   gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14
167s   gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools
167s   javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3
167s   libboost-dev libboost1.83-dev libbz2-dev libcairo-gobject2 libcairo2
167s   libcc1-0 libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev
167s   libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-14-dev libgfortran5
167s   libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev
167s   libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8
167s   libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4
167s   libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
167s   libjs-jquery-datatables libjs-jquery-datatables-extensions
167s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr
167s   libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js
167s   libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker
167s   libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4
167s   liblsan0 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev
167s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
167s   libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
167s   libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpq5 libptexenc1
167s   libquadmath0 libreadline-dev librsvg2-2 libsharpyuv0 libsm6 libstdc++-14-dev
167s   libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0
167s   libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7
167s   libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1
167s   libxss1 libxt6t64 libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv
167s   node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin
167s   r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocstyle
167s   r-bioc-biocversion r-bioc-chemminer r-bioc-fmcsr r-cran-backports
167s   r-cran-base64enc r-cran-bh r-cran-bibtex r-cran-biocmanager r-cran-bit
167s   r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib
167s   r-cran-cachem r-cran-catools r-cran-cli r-cran-codetools r-cran-colorspace
167s   r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-dbi
167s   r-cran-digest r-cran-dt r-cran-evaluate r-cran-fansi r-cran-farver
167s   r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-gdata r-cran-ggplot2
167s   r-cran-glue r-cran-gplots r-cran-gridextra r-cran-gtable r-cran-gtools
167s   r-cran-highr r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv
167s   r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth
167s   r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval
167s   r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix
167s   r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme
167s   r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png
167s   r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp
167s   r-cran-rcurl r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpostgresql
167s   r-cran-rsqlite r-cran-rsvg r-cran-runit r-cran-sass r-cran-scales
167s   r-cran-scatterplot3d r-cran-shiny r-cran-snow r-cran-sourcetools
167s   r-cran-stringi r-cran-tibble r-cran-tinytex r-cran-utf8 r-cran-vctrs
167s   r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml
167s   t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries
167s   texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev
167s 0 upgraded, 256 newly installed, 0 to remove and 0 not upgraded.
167s Need to get 379 MB of archives.
167s After this operation, 1275 MB of additional disk space will be used.
167s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB]
167s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB]
167s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB]
168s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B]
168s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B]
168s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB]
168s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB]
168s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB]
168s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB]
168s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB]
168s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB]
168s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB]
168s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB]
168s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB]
168s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB]
168s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB]
168s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB]
168s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB]
168s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B]
168s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B]
168s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB]
168s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB]
168s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB]
168s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B]
168s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B]
168s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
168s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB]
168s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
168s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
168s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB]
168s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB]
168s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB]
168s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
168s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
168s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB]
168s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
168s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB]
168s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB]
168s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB]
168s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB]
168s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B]
168s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B]
168s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB]
168s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B]
168s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB]
168s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB]
168s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB]
168s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB]
168s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB]
168s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB]
168s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B]
168s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB]
168s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
168s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
168s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
168s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
168s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB]
168s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo-gobject2 amd64 1.18.2-2 [127 kB]
168s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB]
168s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB]
168s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB]
168s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-2 [8004 B]
168s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB]
168s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
168s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
168s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB]
168s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB]
168s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB]
168s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB]
168s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.12+dfsg-2 [161 kB]
168s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
168s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB]
168s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
168s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB]
168s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB]
168s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB]
168s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
168s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
168s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
168s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
168s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
168s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB]
168s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
168s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
168s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
168s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
168s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB]
168s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
168s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
168s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
168s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
168s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
168s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
168s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
168s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB]
168s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB]
168s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB]
169s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB]
169s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB]
169s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB]
169s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB]
169s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB]
169s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB]
169s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB]
169s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB]
169s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB]
169s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB]
169s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB]
169s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB]
169s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B]
169s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB]
169s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB]
169s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB]
169s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB]
169s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB]
169s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libpq5 amd64 17.4-1 [155 kB]
169s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB]
169s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB]
169s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 librsvg2-2 amd64 2.59.90+dfsg-2 [1831 kB]
169s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB]
169s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB]
169s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB]
169s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB]
169s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB]
169s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
169s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
169s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB]
169s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB]
169s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB]
169s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB]
169s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB]
169s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB]
169s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB]
169s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB]
169s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB]
169s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
169s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB]
169s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB]
169s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B]
169s Get:140 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB]
169s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
169s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB]
169s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB]
169s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB]
169s Get:145 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB]
169s Get:146 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB]
169s Get:147 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB]
169s Get:148 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB]
169s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B]
169s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
169s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
169s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB]
169s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB]
169s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB]
169s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB]
169s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB]
169s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB]
169s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB]
169s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
169s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB]
169s Get:161 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
169s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB]
169s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB]
169s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
169s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB]
169s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB]
169s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
169s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
169s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB]
169s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB]
169s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB]
169s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB]
169s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB]
169s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB]
169s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB]
169s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB]
169s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB]
169s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB]
169s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
169s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB]
169s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB]
169s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
169s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB]
169s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB]
169s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB]
169s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB]
169s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB]
169s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
169s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB]
169s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
169s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
169s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB]
169s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB]
169s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
169s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB]
169s Get:196 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB]
169s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB]
169s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB]
170s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB]
170s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB]
170s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB]
170s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB]
170s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB]
170s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB]
170s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB]
170s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB]
170s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
170s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
170s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB]
170s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB]
170s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB]
170s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB]
170s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB]
170s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB]
170s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
170s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB]
170s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB]
170s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
170s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB]
170s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB]
170s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB]
170s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB]
170s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
170s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB]
170s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
170s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB]
170s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB]
170s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB]
170s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB]
170s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB]
170s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB]
170s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB]
170s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dt all 0.33+dfsg-1 [250 kB]
170s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsvg amd64 2.6.1-1 [272 kB]
170s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB]
170s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B]
170s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-chemminer amd64 3.58.0+dfsg-2 [1205 kB]
170s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-runit all 0.4.33-1 [377 kB]
170s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-fmcsr amd64 1.48.0+dfsg-2 [249 kB]
170s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-backports amd64 1.5.0-2 [121 kB]
170s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bibtex all 0.5.1-1 [112 kB]
170s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB]
170s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB]
170s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB]
170s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-catools amd64 1.18.3-1 [209 kB]
170s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB]
170s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB]
170s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtools amd64 3.9.5-1 [340 kB]
170s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gdata all 3.0.1-1 [491 kB]
170s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernsmooth amd64 2.23-26-1 [94.5 kB]
170s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gplots all 3.2.0-1 [484 kB]
170s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB]
170s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpostgresql amd64 0.7-7+dfsg-1 [365 kB]
170s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB]
170s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scatterplot3d all 0.3-44-1 [349 kB]
170s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB]
171s Preconfiguring packages ...
171s Fetched 379 MB in 3s (127 MB/s)
171s Selecting previously unselected package libisl23:amd64.
171s (Reading database ... 
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(Reading database ... 65%
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(Reading database ... 90%
(Reading database ... 95%
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(Reading database ... 84827 files and directories currently installed.)
171s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ...
171s Unpacking libisl23:amd64 (0.27-1) ...
171s Selecting previously unselected package libmpc3:amd64.
171s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ...
171s Unpacking libmpc3:amd64 (1.3.1-1build2) ...
172s Selecting previously unselected package cpp-14-x86-64-linux-gnu.
172s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ...
172s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
172s Selecting previously unselected package cpp-14.
172s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ...
172s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
172s Selecting previously unselected package cpp-x86-64-linux-gnu.
172s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
172s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
172s Selecting previously unselected package cpp.
172s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ...
172s Unpacking cpp (4:14.2.0-1ubuntu1) ...
172s Selecting previously unselected package libcc1-0:amd64.
172s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ...
172s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ...
172s Selecting previously unselected package libgomp1:amd64.
172s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ...
172s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ...
172s Selecting previously unselected package libitm1:amd64.
172s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ...
172s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ...
172s Selecting previously unselected package libasan8:amd64.
172s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ...
172s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ...
172s Selecting previously unselected package liblsan0:amd64.
172s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ...
172s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ...
172s Selecting previously unselected package libtsan2:amd64.
172s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ...
172s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ...
172s Selecting previously unselected package libubsan1:amd64.
172s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ...
172s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ...
172s Selecting previously unselected package libhwasan0:amd64.
172s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ...
172s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ...
172s Selecting previously unselected package libquadmath0:amd64.
172s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ...
172s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ...
172s Selecting previously unselected package libgcc-14-dev:amd64.
172s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ...
172s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ...
172s Selecting previously unselected package gcc-14-x86-64-linux-gnu.
172s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ...
172s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
173s Selecting previously unselected package gcc-14.
173s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ...
173s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
173s Selecting previously unselected package gcc-x86-64-linux-gnu.
173s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
173s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
173s Selecting previously unselected package gcc.
173s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ...
173s Unpacking gcc (4:14.2.0-1ubuntu1) ...
173s Selecting previously unselected package libstdc++-14-dev:amd64.
173s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ...
173s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ...
173s Selecting previously unselected package g++-14-x86-64-linux-gnu.
173s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ...
173s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
173s Selecting previously unselected package g++-14.
173s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ...
173s Unpacking g++-14 (14.2.0-17ubuntu3) ...
173s Selecting previously unselected package g++-x86-64-linux-gnu.
173s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
173s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
173s Selecting previously unselected package g++.
173s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ...
174s Unpacking g++ (4:14.2.0-1ubuntu1) ...
174s Selecting previously unselected package build-essential.
174s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ...
174s Unpacking build-essential (12.10ubuntu1) ...
174s Selecting previously unselected package dctrl-tools.
174s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ...
174s Unpacking dctrl-tools (2.24-3build3) ...
174s Selecting previously unselected package fonts-dejavu-mono.
174s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ...
174s Unpacking fonts-dejavu-mono (2.37-8) ...
174s Selecting previously unselected package fonts-dejavu-core.
174s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ...
174s Unpacking fonts-dejavu-core (2.37-8) ...
174s Selecting previously unselected package fontconfig-config.
174s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ...
174s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
174s Selecting previously unselected package libfontconfig1:amd64.
174s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ...
174s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ...
174s Selecting previously unselected package fontconfig.
174s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ...
174s Unpacking fontconfig (2.15.0-2ubuntu1) ...
174s Selecting previously unselected package fonts-font-awesome.
174s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
174s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
174s Selecting previously unselected package fonts-glyphicons-halflings.
174s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
174s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
174s Selecting previously unselected package fonts-lmodern.
174s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ...
174s Unpacking fonts-lmodern (2.005-1) ...
174s Selecting previously unselected package fonts-mathjax.
174s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
174s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
174s Selecting previously unselected package libgfortran5:amd64.
174s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ...
174s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ...
175s Selecting previously unselected package libgfortran-14-dev:amd64.
175s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ...
175s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ...
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175s Selecting previously unselected package gfortran-x86-64-linux-gnu.
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175s Selecting previously unselected package icu-devtools.
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175s Selecting previously unselected package javascript-common.
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175s Selecting previously unselected package liblatex-tounicode-perl.
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175s Selecting previously unselected package libblas3:amd64.
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175s Selecting previously unselected package libboost1.83-dev:amd64.
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178s Selecting previously unselected package libxrender1:amd64.
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178s Selecting previously unselected package libcairo2:amd64.
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178s Selecting previously unselected package libcairo-gobject2:amd64.
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178s Selecting previously unselected package libdatrie1:amd64.
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178s Selecting previously unselected package libgdk-pixbuf2.0-common.
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178s Selecting previously unselected package libjpeg-turbo8:amd64.
178s Preparing to unpack .../062-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ...
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178s Selecting previously unselected package liblerc4:amd64.
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178s Selecting previously unselected package libsharpyuv0:amd64.
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178s Selecting previously unselected package libwebp7:amd64.
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178s Selecting previously unselected package libtiff6:amd64.
178s Preparing to unpack .../068-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ...
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178s Selecting previously unselected package libgdk-pixbuf-2.0-0:amd64.
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178s Selecting previously unselected package libgraphite2-3:amd64.
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178s Selecting previously unselected package libharfbuzz0b:amd64.
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178s Selecting previously unselected package x11-common.
178s Preparing to unpack .../072-x11-common_1%3a7.7+23ubuntu3_all.deb ...
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178s Selecting previously unselected package libice6:amd64.
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179s Selecting previously unselected package libicu-dev:amd64.
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179s Selecting previously unselected package libjpeg-turbo8-dev:amd64.
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179s Selecting previously unselected package libjs-bootstrap.
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179s Selecting previously unselected package libjs-popper.js.
179s Preparing to unpack .../079-libjs-popper.js_1.16.1+ds-6_all.deb ...
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179s Selecting previously unselected package libjs-highlight.js.
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179s Selecting previously unselected package libjs-jquery.
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179s Selecting previously unselected package libjs-sifter.js.
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180s Selecting previously unselected package libjs-lunr.
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180s Selecting previously unselected package libjs-prettify.
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180s Selecting previously unselected package libkpathsea6:amd64.
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180s Selecting previously unselected package liblapack3:amd64.
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180s Selecting previously unselected package liblua5.4-0:amd64.
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180s Selecting previously unselected package libncurses-dev:amd64.
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180s Selecting previously unselected package libthai-data.
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180s Selecting previously unselected package libpango-1.0-0:amd64.
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180s Selecting previously unselected package libpangoft2-1.0-0:amd64.
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180s Selecting previously unselected package libpangocairo-1.0-0:amd64.
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180s Selecting previously unselected package libpaper2:amd64.
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180s Selecting previously unselected package libpcre2-16-0:amd64.
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181s Selecting previously unselected package libpkgconf3:amd64.
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181s Selecting previously unselected package zlib1g-dev:amd64.
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181s Selecting previously unselected package libpng-dev:amd64.
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181s Selecting previously unselected package libpotrace0:amd64.
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181s Selecting previously unselected package libpq5:amd64.
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181s Selecting previously unselected package libptexenc1:amd64.
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181s Selecting previously unselected package libreadline-dev:amd64.
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181s Selecting previously unselected package librsvg2-2:amd64.
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181s Selecting previously unselected package libsynctex2:amd64.
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181s Selecting previously unselected package libtcl8.6:amd64.
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181s Selecting previously unselected package libteckit0:amd64.
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181s Selecting previously unselected package libtexlua53-5:amd64.
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181s Selecting previously unselected package libxft2:amd64.
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181s Selecting previously unselected package libxss1:amd64.
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181s Selecting previously unselected package libtk8.6:amd64.
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181s Selecting previously unselected package libxt6t64:amd64.
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181s Selecting previously unselected package libxmu6:amd64.
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181s Selecting previously unselected package libxpm4:amd64.
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181s Selecting previously unselected package libxaw7:amd64.
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181s Selecting previously unselected package libxi6:amd64.
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182s Selecting previously unselected package libzzip-0-13t64:amd64.
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182s Selecting previously unselected package zip.
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182s Selecting previously unselected package r-base-core.
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182s Selecting previously unselected package node-html5shiv.
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182s Unpacking node-html5shiv (3.7.3+dfsg-5) ...
182s Selecting previously unselected package node-normalize.css.
183s Preparing to unpack .../141-node-normalize.css_8.0.1-5_all.deb ...
183s Unpacking node-normalize.css (8.0.1-5) ...
183s Selecting previously unselected package pandoc-data.
183s Preparing to unpack .../142-pandoc-data_3.1.11.1-3build1_all.deb ...
183s Unpacking pandoc-data (3.1.11.1-3build1) ...
183s Selecting previously unselected package pandoc.
183s Preparing to unpack .../143-pandoc_3.1.11.1+ds-2_amd64.deb ...
183s Unpacking pandoc (3.1.11.1+ds-2) ...
184s Selecting previously unselected package liblzma-dev:amd64.
184s Preparing to unpack .../144-liblzma-dev_5.6.4-1_amd64.deb ...
184s Unpacking liblzma-dev:amd64 (5.6.4-1) ...
184s Selecting previously unselected package pkgconf-bin.
184s Preparing to unpack .../145-pkgconf-bin_1.8.1-4_amd64.deb ...
184s Unpacking pkgconf-bin (1.8.1-4) ...
184s Selecting previously unselected package pkgconf:amd64.
184s Preparing to unpack .../146-pkgconf_1.8.1-4_amd64.deb ...
184s Unpacking pkgconf:amd64 (1.8.1-4) ...
184s Selecting previously unselected package libtirpc-dev:amd64.
184s Preparing to unpack .../147-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ...
184s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ...
184s Selecting previously unselected package r-base-dev.
184s Preparing to unpack .../148-r-base-dev_4.4.3-1_all.deb ...
184s Unpacking r-base-dev (4.4.3-1) ...
184s Selecting previously unselected package pkg-r-autopkgtest.
184s Preparing to unpack .../149-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
184s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
184s Selecting previously unselected package r-bioc-biocgenerics.
184s Preparing to unpack .../150-r-bioc-biocgenerics_0.52.0-2_all.deb ...
184s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
184s Selecting previously unselected package r-cran-base64enc.
184s Preparing to unpack .../151-r-cran-base64enc_0.1-3-3_amd64.deb ...
184s Unpacking r-cran-base64enc (0.1-3-3) ...
184s Selecting previously unselected package r-cran-digest.
184s Preparing to unpack .../152-r-cran-digest_0.6.37-1_amd64.deb ...
184s Unpacking r-cran-digest (0.6.37-1) ...
184s Selecting previously unselected package r-cran-fastmap.
184s Preparing to unpack .../153-r-cran-fastmap_1.2.0-1_amd64.deb ...
184s Unpacking r-cran-fastmap (1.2.0-1) ...
184s Selecting previously unselected package r-cran-rlang.
184s Preparing to unpack .../154-r-cran-rlang_1.1.5-1_amd64.deb ...
184s Unpacking r-cran-rlang (1.1.5-1) ...
184s Selecting previously unselected package r-cran-htmltools.
184s Preparing to unpack .../155-r-cran-htmltools_0.5.8.1-1_amd64.deb ...
184s Unpacking r-cran-htmltools (0.5.8.1-1) ...
184s Selecting previously unselected package r-cran-evaluate.
184s Preparing to unpack .../156-r-cran-evaluate_1.0.3-1_all.deb ...
184s Unpacking r-cran-evaluate (1.0.3-1) ...
184s Selecting previously unselected package r-cran-xfun.
184s Preparing to unpack .../157-r-cran-xfun_0.51+dfsg-1_amd64.deb ...
184s Unpacking r-cran-xfun (0.51+dfsg-1) ...
184s Selecting previously unselected package r-cran-highr.
184s Preparing to unpack .../158-r-cran-highr_0.11+dfsg-1_all.deb ...
184s Unpacking r-cran-highr (0.11+dfsg-1) ...
184s Selecting previously unselected package r-cran-yaml.
184s Preparing to unpack .../159-r-cran-yaml_2.3.10-1_amd64.deb ...
184s Unpacking r-cran-yaml (2.3.10-1) ...
184s Selecting previously unselected package libjs-mathjax.
184s Preparing to unpack .../160-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
184s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
185s Selecting previously unselected package r-cran-knitr.
185s Preparing to unpack .../161-r-cran-knitr_1.49+dfsg-1_all.deb ...
185s Unpacking r-cran-knitr (1.49+dfsg-1) ...
185s Selecting previously unselected package r-cran-cachem.
185s Preparing to unpack .../162-r-cran-cachem_1.1.0-1_amd64.deb ...
185s Unpacking r-cran-cachem (1.1.0-1) ...
185s Selecting previously unselected package r-cran-jquerylib.
185s Preparing to unpack .../163-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ...
185s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ...
185s Selecting previously unselected package r-cran-jsonlite.
185s Preparing to unpack .../164-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ...
185s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ...
185s Selecting previously unselected package r-cran-cli.
185s Preparing to unpack .../165-r-cran-cli_3.6.4-1_amd64.deb ...
185s Unpacking r-cran-cli (3.6.4-1) ...
185s Selecting previously unselected package r-cran-glue.
185s Preparing to unpack .../166-r-cran-glue_1.8.0-1_amd64.deb ...
185s Unpacking r-cran-glue (1.8.0-1) ...
185s Selecting previously unselected package r-cran-lifecycle.
185s Preparing to unpack .../167-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
185s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
185s Selecting previously unselected package r-cran-memoise.
185s Preparing to unpack .../168-r-cran-memoise_2.0.1-1_all.deb ...
185s Unpacking r-cran-memoise (2.0.1-1) ...
185s Selecting previously unselected package r-cran-mime.
185s Preparing to unpack .../169-r-cran-mime_0.12-2_amd64.deb ...
185s Unpacking r-cran-mime (0.12-2) ...
186s Selecting previously unselected package r-cran-fs.
186s Preparing to unpack .../170-r-cran-fs_1.6.5+dfsg-1_amd64.deb ...
186s Unpacking r-cran-fs (1.6.5+dfsg-1) ...
186s Selecting previously unselected package r-cran-r6.
186s Preparing to unpack .../171-r-cran-r6_2.6.1-1_all.deb ...
186s Unpacking r-cran-r6 (2.6.1-1) ...
186s Selecting previously unselected package r-cran-rappdirs.
186s Preparing to unpack .../172-r-cran-rappdirs_0.3.3-1_amd64.deb ...
186s Unpacking r-cran-rappdirs (0.3.3-1) ...
186s Selecting previously unselected package r-cran-sass.
186s Preparing to unpack .../173-r-cran-sass_0.4.9+dfsg-1_amd64.deb ...
186s Unpacking r-cran-sass (0.4.9+dfsg-1) ...
186s Selecting previously unselected package r-cran-bslib.
186s Preparing to unpack .../174-r-cran-bslib_0.8.0+dfsg-1_all.deb ...
186s Unpacking r-cran-bslib (0.8.0+dfsg-1) ...
186s Selecting previously unselected package r-cran-fontawesome.
186s Preparing to unpack .../175-r-cran-fontawesome_0.5.3-1_all.deb ...
186s Unpacking r-cran-fontawesome (0.5.3-1) ...
186s Selecting previously unselected package r-cran-tinytex.
186s Preparing to unpack .../176-r-cran-tinytex_0.56-1_all.deb ...
186s Unpacking r-cran-tinytex (0.56-1) ...
186s Selecting previously unselected package libjs-modernizr.
186s Preparing to unpack .../177-libjs-modernizr_3.13.0-0.1_all.deb ...
186s Unpacking libjs-modernizr (3.13.0-0.1) ...
186s Selecting previously unselected package r-cran-pkgkitten.
186s Preparing to unpack .../178-r-cran-pkgkitten_0.2.4-1_all.deb ...
186s Unpacking r-cran-pkgkitten (0.2.4-1) ...
186s Selecting previously unselected package r-cran-rcpp.
186s Preparing to unpack .../179-r-cran-rcpp_1.0.14-1_amd64.deb ...
186s Unpacking r-cran-rcpp (1.0.14-1) ...
186s Selecting previously unselected package r-cran-later.
186s Preparing to unpack .../180-r-cran-later_1.4.1+dfsg-1_amd64.deb ...
186s Unpacking r-cran-later (1.4.1+dfsg-1) ...
186s Selecting previously unselected package r-cran-magrittr.
186s Preparing to unpack .../181-r-cran-magrittr_2.0.3-1_amd64.deb ...
186s Unpacking r-cran-magrittr (2.0.3-1) ...
186s Selecting previously unselected package r-cran-promises.
186s Preparing to unpack .../182-r-cran-promises_1.3.2+dfsg-1_amd64.deb ...
186s Unpacking r-cran-promises (1.3.2+dfsg-1) ...
186s Selecting previously unselected package r-cran-httpuv.
186s Preparing to unpack .../183-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ...
186s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ...
186s Selecting previously unselected package r-cran-xtable.
186s Preparing to unpack .../184-r-cran-xtable_1%3a1.8-4-2_all.deb ...
186s Unpacking r-cran-xtable (1:1.8-4-2) ...
186s Selecting previously unselected package r-cran-sourcetools.
186s Preparing to unpack .../185-r-cran-sourcetools_0.1.7-1-1_amd64.deb ...
186s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
186s Selecting previously unselected package r-cran-crayon.
186s Preparing to unpack .../186-r-cran-crayon_1.5.3-1_all.deb ...
186s Unpacking r-cran-crayon (1.5.3-1) ...
187s Selecting previously unselected package r-cran-withr.
187s Preparing to unpack .../187-r-cran-withr_3.0.2+dfsg-1_all.deb ...
187s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
187s Selecting previously unselected package r-cran-commonmark.
187s Preparing to unpack .../188-r-cran-commonmark_1.9.2-2_amd64.deb ...
187s Unpacking r-cran-commonmark (1.9.2-2) ...
187s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
187s Preparing to unpack .../189-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ...
187s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
187s Selecting previously unselected package r-cran-shiny.
187s Preparing to unpack .../190-r-cran-shiny_1.10.0+dfsg-2_all.deb ...
187s Unpacking r-cran-shiny (1.10.0+dfsg-2) ...
187s Selecting previously unselected package r-cran-rmarkdown.
187s Preparing to unpack .../191-r-cran-rmarkdown_2.29+dfsg-1_all.deb ...
187s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ...
187s Selecting previously unselected package r-cran-bookdown.
187s Preparing to unpack .../192-r-cran-bookdown_0.42+dfsg-1_all.deb ...
187s Unpacking r-cran-bookdown (0.42+dfsg-1) ...
187s Selecting previously unselected package r-cran-biocmanager.
187s Preparing to unpack .../193-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ...
187s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ...
187s Selecting previously unselected package tex-common.
187s Preparing to unpack .../194-tex-common_6.19_all.deb ...
187s Unpacking tex-common (6.19) ...
187s Selecting previously unselected package t1utils.
187s Preparing to unpack .../195-t1utils_1.41-4build3_amd64.deb ...
187s Unpacking t1utils (1.41-4build3) ...
187s Selecting previously unselected package texlive-binaries.
187s Preparing to unpack .../196-texlive-binaries_2024.20240313.70630+ds-6_amd64.deb ...
187s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ...
187s Selecting previously unselected package texlive-base.
187s Preparing to unpack .../197-texlive-base_2024.20250114-1_all.deb ...
187s Unpacking texlive-base (2024.20250114-1) ...
188s Selecting previously unselected package texlive-latex-base.
188s Preparing to unpack .../198-texlive-latex-base_2024.20250114-1_all.deb ...
188s Unpacking texlive-latex-base (2024.20250114-1) ...
189s Selecting previously unselected package texlive-bibtex-extra.
189s Preparing to unpack .../199-texlive-bibtex-extra_2024.20250114-1_all.deb ...
189s Unpacking texlive-bibtex-extra (2024.20250114-1) ...
191s Selecting previously unselected package r-bioc-biocversion.
191s Preparing to unpack .../200-r-bioc-biocversion_3.20.0-2_all.deb ...
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191s Selecting previously unselected package r-bioc-biocstyle.
191s Preparing to unpack .../201-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ...
191s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ...
191s Selecting previously unselected package r-cran-rjson.
191s Preparing to unpack .../202-r-cran-rjson_0.2.23-1_amd64.deb ...
191s Unpacking r-cran-rjson (0.2.23-1) ...
191s Selecting previously unselected package r-cran-bitops.
191s Preparing to unpack .../203-r-cran-bitops_1.0-9-1_amd64.deb ...
191s Unpacking r-cran-bitops (1.0-9-1) ...
191s Selecting previously unselected package r-cran-rcurl.
191s Preparing to unpack .../204-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ...
191s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ...
191s Selecting previously unselected package r-cran-dbi.
191s Preparing to unpack .../205-r-cran-dbi_1.2.3-1_all.deb ...
191s Unpacking r-cran-dbi (1.2.3-1) ...
191s Selecting previously unselected package r-cran-gtable.
191s Preparing to unpack .../206-r-cran-gtable_0.3.6+dfsg-1_all.deb ...
191s Unpacking r-cran-gtable (0.3.6+dfsg-1) ...
191s Selecting previously unselected package r-cran-isoband.
191s Preparing to unpack .../207-r-cran-isoband_0.2.7-1_amd64.deb ...
191s Unpacking r-cran-isoband (0.2.7-1) ...
191s Selecting previously unselected package r-cran-mass.
191s Preparing to unpack .../208-r-cran-mass_7.3-64-1_amd64.deb ...
191s Unpacking r-cran-mass (7.3-64-1) ...
191s Selecting previously unselected package r-cran-lattice.
191s Preparing to unpack .../209-r-cran-lattice_0.22-6-1_amd64.deb ...
191s Unpacking r-cran-lattice (0.22-6-1) ...
191s Selecting previously unselected package r-cran-nlme.
191s Preparing to unpack .../210-r-cran-nlme_3.1.167-1_amd64.deb ...
191s Unpacking r-cran-nlme (3.1.167-1) ...
191s Selecting previously unselected package r-cran-matrix.
191s Preparing to unpack .../211-r-cran-matrix_1.7-3-1_amd64.deb ...
191s Unpacking r-cran-matrix (1.7-3-1) ...
191s Selecting previously unselected package r-cran-mgcv.
191s Preparing to unpack .../212-r-cran-mgcv_1.9-1-1_amd64.deb ...
191s Unpacking r-cran-mgcv (1.9-1-1) ...
191s Selecting previously unselected package r-cran-farver.
191s Preparing to unpack .../213-r-cran-farver_2.1.2-1_amd64.deb ...
191s Unpacking r-cran-farver (2.1.2-1) ...
192s Selecting previously unselected package r-cran-labeling.
192s Preparing to unpack .../214-r-cran-labeling_0.4.3-1_all.deb ...
192s Unpacking r-cran-labeling (0.4.3-1) ...
192s Selecting previously unselected package r-cran-colorspace.
192s Preparing to unpack .../215-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ...
192s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ...
192s Selecting previously unselected package r-cran-munsell.
192s Preparing to unpack .../216-r-cran-munsell_0.5.1-1_all.deb ...
192s Unpacking r-cran-munsell (0.5.1-1) ...
192s Selecting previously unselected package r-cran-rcolorbrewer.
192s Preparing to unpack .../217-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
192s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
192s Selecting previously unselected package r-cran-viridislite.
192s Preparing to unpack .../218-r-cran-viridislite_0.4.2-2_all.deb ...
192s Unpacking r-cran-viridislite (0.4.2-2) ...
192s Selecting previously unselected package r-cran-scales.
192s Preparing to unpack .../219-r-cran-scales_1.3.0-1_all.deb ...
192s Unpacking r-cran-scales (1.3.0-1) ...
192s Selecting previously unselected package r-cran-fansi.
192s Preparing to unpack .../220-r-cran-fansi_1.0.5-1_amd64.deb ...
192s Unpacking r-cran-fansi (1.0.5-1) ...
192s Selecting previously unselected package r-cran-utf8.
192s Preparing to unpack .../221-r-cran-utf8_1.2.4-1_amd64.deb ...
192s Unpacking r-cran-utf8 (1.2.4-1) ...
192s Selecting previously unselected package r-cran-vctrs.
192s Preparing to unpack .../222-r-cran-vctrs_0.6.5-1_amd64.deb ...
192s Unpacking r-cran-vctrs (0.6.5-1) ...
192s Selecting previously unselected package r-cran-pillar.
192s Preparing to unpack .../223-r-cran-pillar_1.10.1+dfsg-1_all.deb ...
192s Unpacking r-cran-pillar (1.10.1+dfsg-1) ...
192s Selecting previously unselected package r-cran-pkgconfig.
192s Preparing to unpack .../224-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
192s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
192s Selecting previously unselected package r-cran-tibble.
192s Preparing to unpack .../225-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ...
192s Unpacking r-cran-tibble (3.2.1+dfsg-3) ...
192s Selecting previously unselected package r-cran-ggplot2.
192s Preparing to unpack .../226-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ...
192s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ...
192s Selecting previously unselected package r-cran-gridextra.
192s Preparing to unpack .../227-r-cran-gridextra_2.3-3build1_all.deb ...
192s Unpacking r-cran-gridextra (2.3-3build1) ...
192s Selecting previously unselected package r-cran-png.
192s Preparing to unpack .../228-r-cran-png_0.1-8-1build2_amd64.deb ...
192s Unpacking r-cran-png (0.1-8-1build2) ...
192s Selecting previously unselected package r-cran-htmlwidgets.
192s Preparing to unpack .../229-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ...
192s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ...
192s Selecting previously unselected package r-cran-lazyeval.
192s Preparing to unpack .../230-r-cran-lazyeval_0.2.2-1build1_amd64.deb ...
192s Unpacking r-cran-lazyeval (0.2.2-1build1) ...
192s Selecting previously unselected package r-cran-crosstalk.
192s Preparing to unpack .../231-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ...
192s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ...
192s Selecting previously unselected package r-cran-dt.
192s Preparing to unpack .../232-r-cran-dt_0.33+dfsg-1_all.deb ...
192s Unpacking r-cran-dt (0.33+dfsg-1) ...
193s Selecting previously unselected package r-cran-rsvg.
193s Preparing to unpack .../233-r-cran-rsvg_2.6.1-1_amd64.deb ...
193s Unpacking r-cran-rsvg (2.6.1-1) ...
193s Selecting previously unselected package r-cran-stringi.
193s Preparing to unpack .../234-r-cran-stringi_1.8.4-1build1_amd64.deb ...
193s Unpacking r-cran-stringi (1.8.4-1build1) ...
193s Selecting previously unselected package r-cran-bh.
193s Preparing to unpack .../235-r-cran-bh_1.84.0-1_all.deb ...
193s Unpacking r-cran-bh (1.84.0-1) ...
193s Selecting previously unselected package r-bioc-chemminer.
193s Preparing to unpack .../236-r-bioc-chemminer_3.58.0+dfsg-2_amd64.deb ...
193s Unpacking r-bioc-chemminer (3.58.0+dfsg-2) ...
193s Selecting previously unselected package r-cran-runit.
193s Preparing to unpack .../237-r-cran-runit_0.4.33-1_all.deb ...
193s Unpacking r-cran-runit (0.4.33-1) ...
193s Selecting previously unselected package r-bioc-fmcsr.
193s Preparing to unpack .../238-r-bioc-fmcsr_1.48.0+dfsg-2_amd64.deb ...
193s Unpacking r-bioc-fmcsr (1.48.0+dfsg-2) ...
193s Selecting previously unselected package r-cran-backports.
193s Preparing to unpack .../239-r-cran-backports_1.5.0-2_amd64.deb ...
193s Unpacking r-cran-backports (1.5.0-2) ...
193s Selecting previously unselected package r-cran-bibtex.
193s Preparing to unpack .../240-r-cran-bibtex_0.5.1-1_all.deb ...
193s Unpacking r-cran-bibtex (0.5.1-1) ...
193s Selecting previously unselected package r-cran-bit.
193s Preparing to unpack .../241-r-cran-bit_4.6.0+dfsg-1_amd64.deb ...
193s Unpacking r-cran-bit (4.6.0+dfsg-1) ...
193s Selecting previously unselected package r-cran-bit64.
193s Preparing to unpack .../242-r-cran-bit64_4.6.0-1-1ubuntu2_amd64.deb ...
193s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ...
193s Selecting previously unselected package r-cran-blob.
193s Preparing to unpack .../243-r-cran-blob_1.2.4-1_all.deb ...
193s Unpacking r-cran-blob (1.2.4-1) ...
193s Selecting previously unselected package r-cran-catools.
193s Preparing to unpack .../244-r-cran-catools_1.18.3-1_amd64.deb ...
193s Unpacking r-cran-catools (1.18.3-1) ...
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201s Processing triggers for libc-bin (2.41-1ubuntu2) ...
201s Processing triggers for tex-common (6.19) ...
202s Running updmap-sys. This may take some time... done.
202s Running mktexlsr /var/lib/texmf ... done.
202s Building format(s) --all.
233s 	This may take some time... done.
234s autopkgtest [22:01:10]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
234s autopkgtest [22:01:10]: test pkg-r-autopkgtest: [-----------------------
234s Test: Try to load the R library ChemmineR
234s 
234s R version 4.4.3 (2025-02-28) -- "Trophy Case"
234s Copyright (C) 2025 The R Foundation for Statistical Computing
234s Platform: x86_64-pc-linux-gnu
234s 
234s R is free software and comes with ABSOLUTELY NO WARRANTY.
234s You are welcome to redistribute it under certain conditions.
234s Type 'license()' or 'licence()' for distribution details.
234s 
234s R is a collaborative project with many contributors.
234s Type 'contributors()' for more information and
234s 'citation()' on how to cite R or R packages in publications.
234s 
234s Type 'demo()' for some demos, 'help()' for on-line help, or
234s 'help.start()' for an HTML browser interface to help.
234s Type 'q()' to quit R.
234s 
234s > library('ChemmineR')
235s > 
235s > 
235s Other tests are currently unsupported!
235s They will be progressively added.
236s autopkgtest [22:01:12]: test pkg-r-autopkgtest: -----------------------]
236s pkg-r-autopkgtest    PASS
236s autopkgtest [22:01:12]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
236s autopkgtest [22:01:12]: @@@@@@@@@@@@@@@@@@@@ summary
236s pkg-r-autopkgtest    PASS
252s nova [W] Skipping flock for amd64
252s Creating nova instance adt-plucky-amd64-r-bioc-chemminer-20250315-215716-juju-7f2275-prod-proposed-migration-environment-15-0131419d-e969-438d-9fb6-15360c900454 from image adt/ubuntu-plucky-amd64-server-20250306.img (UUID 60d877d7-b74c-4f24-920d-f4570db0a338)...
252s nova [W] Timed out waiting for e56e02dc-9b95-4095-9c1c-4ffce5ba693d to get deleted.