0s autopkgtest [21:57:05]: starting date and time: 2025-03-15 21:57:05+0000 0s autopkgtest [21:57:05]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [21:57:05]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1yiq6ylh/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-biovizbase --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-3.secgroup --name adt-plucky-amd64-r-bioc-biovizbase-20250315-215704-juju-7f2275-prod-proposed-migration-environment-2-dd8e4f09-b946-45d9-861e-4b1ec453d22b --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 51s autopkgtest [21:57:56]: testbed dpkg architecture: amd64 51s autopkgtest [21:57:56]: testbed apt version: 2.9.31ubuntu1 52s autopkgtest [21:57:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 52s autopkgtest [21:57:57]: testbed release detected to be: None 52s autopkgtest [21:57:57]: updating testbed package index (apt update) 52s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 52s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 52s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 52s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 52s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 52s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 52s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 52s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 52s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 52s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 52s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 52s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 52s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 52s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 52s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 52s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 52s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 53s Fetched 1265 kB in 0s (5459 kB/s) 54s Reading package lists... 54s Reading package lists... 54s Building dependency tree... 54s Reading state information... 55s Calculating upgrade... 55s Calculating upgrade... 55s The following package was automatically installed and is no longer required: 55s libnl-genl-3-200 55s Use 'sudo apt autoremove' to remove it. 55s The following NEW packages will be installed: 55s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 55s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 55s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 55s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 55s The following packages will be upgraded: 55s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 55s cloud-init cloud-init-base curl dosfstools fwupd gir1.2-girepository-2.0 55s gir1.2-glib-2.0 htop hwdata libapparmor1 libapt-pkg7.0 libaudit-common 55s libaudit1 libbinutils libbrotli1 libcap-ng0 libctf-nobfd0 libctf0 55s libcurl3t64-gnutls libcurl4t64 libestr0 libfwupd3 libgirepository-1.0-1 55s libglib2.0-0t64 libglib2.0-data libgprofng0 libjemalloc2 liblz4-1 liblzma5 55s libmm-glib0 libncurses6 libncursesw6 libnl-3-200 libnl-genl-3-200 55s libnl-route-3-200 libpci3 libpython3-stdlib libpython3.13 55s libpython3.13-minimal libpython3.13-stdlib libselinux1 libsframe1 55s libsqlite3-0 libtinfo6 libxml2 linux-firmware linux-generic 55s linux-headers-generic linux-headers-virtual linux-image-generic 55s linux-image-virtual linux-libc-dev linux-tools-common linux-virtual 55s media-types ncurses-base ncurses-bin ncurses-term pci.ids pciutils 55s pinentry-curses python-apt-common python3 python3-apt python3-cffi-backend 55s python3-dbus python3-gi python3-jinja2 python3-lazr.uri python3-markupsafe 55s python3-minimal python3-systemd python3-yaml python3.13 python3.13-gdbm 55s python3.13-minimal rsync rsyslog strace xz-utils 56s 86 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 56s Need to get 807 MB of archives. 56s After this operation, 326 MB of additional disk space will be used. 56s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 56s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 56s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 56s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 56s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 56s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 56s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 56s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 56s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 56s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 56s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 56s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 56s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 56s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 56s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 56s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 56s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 56s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 56s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 56s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 56s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 56s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 56s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 56s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 56s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 56s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 56s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 56s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 56s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 56s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 56s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 56s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 56s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 56s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 56s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 56s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 56s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 56s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 56s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 56s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 56s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 56s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 56s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 56s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 56s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 56s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 56s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 56s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 56s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 56s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 56s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 56s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 56s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 56s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 56s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 56s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 56s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 56s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 56s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 56s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 56s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 56s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 56s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 56s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 56s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 56s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 56s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 56s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 56s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 56s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 56s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 56s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 56s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 56s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 56s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 56s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 56s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 56s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 61s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 61s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 61s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 62s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 62s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 62s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 62s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 62s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 62s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 62s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 62s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 62s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 62s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 62s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 62s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 62s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 62s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 62s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 62s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 62s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 63s Preconfiguring packages ... 63s Fetched 807 MB in 7s (120 MB/s) 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 63s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ... 63s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ... 63s Setting up ncurses-bin (6.5+20250216-2) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 63s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... 63s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ... 63s Setting up ncurses-base (6.5+20250216-2) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 63s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ... 63s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ... 64s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ... 64s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ... 64s Setting up liblz4-1:amd64 (1.10.0-4) ... 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 64s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ... 64s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ... 64s Setting up liblzma5:amd64 (5.6.4-1) ... 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 64s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 64s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 64s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 64s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 64s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 65s Setting up apt (2.9.33) ... 65s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 65s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 65s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 65s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 65s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 65s Setting up python3-minimal (3.13.2-2) ... 66s (Reading database ... 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Preparing to unpack .../68-python3-systemd_235-1build6_amd64.deb ... 82s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 82s Preparing to unpack .../69-python3.13-gdbm_3.13.2-2_amd64.deb ... 82s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 82s Preparing to unpack .../70-cloud-init_25.1-0ubuntu3_all.deb ... 82s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 82s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 82s Setting up media-types (13.0.0) ... 82s Installing new version of config file /etc/mime.types ... 82s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 82s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 82s Setting up pci.ids (0.0~2025.03.09-1) ... 82s Setting up apt-utils (2.9.33) ... 82s Setting up libdebuginfod-common (0.192-4) ... 82s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 82s Setting up bpftool (7.6.0+6.14.0-10.10) ... 82s Setting up libestr0:amd64 (0.1.11-2) ... 82s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 82s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 82s Setting up dosfstools (4.2-1.2) ... 82s Setting up rsyslog (8.2412.0-2ubuntu2) ... 82s info: The user `syslog' is already a member of `adm'. 83s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 83s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 83s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 83s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 83s Setting up linux-headers-generic (6.14.0-10.10) ... 83s Setting up libjemalloc2:amd64 (5.3.0-3) ... 83s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 83s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 83s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 84s Installing new version of config file /etc/apparmor.d/openvpn ... 85s Reloading AppArmor profiles 86s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 86s No schema files found: doing nothing. 86s Setting up libglib2.0-data (2.84.0-1) ... 86s Setting up libncurses6:amd64 (6.5+20250216-2) ... 86s Setting up strace (6.13+ds-1ubuntu1) ... 86s Setting up xz-utils (5.6.4-1) ... 86s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 86s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 89s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 89s Setting up libpci3:amd64 (1:3.13.0-2) ... 89s Setting up python-apt-common (2.9.9build1) ... 89s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 89s Setting up pnp.ids (0.393-3) ... 89s Setting up libnl-3-200:amd64 (3.7.0-1) ... 89s Setting up python3.13-minimal (3.13.2-2) ... 90s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 90s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 90s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 90s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 90s Setting up rsync (3.4.1+ds1-3) ... 90s rsync.service is a disabled or a static unit not running, not starting it. 90s Setting up python3.13-gdbm (3.13.2-2) ... 90s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 90s Setting up ncurses-term (6.5+20250216-2) ... 90s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 90s Setting up libpython3.13:amd64 (3.13.2-2) ... 90s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 90s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 90s Setting up linux-headers-virtual (6.14.0-10.10) ... 90s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 90s Setting up python3.13 (3.13.2-2) ... 91s Setting up htop (3.4.0-2) ... 91s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 93s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 93s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 93s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 93s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 93s Setting up libfwupd3:amd64 (2.0.6-4) ... 93s Setting up python3 (3.13.2-2) ... 94s Setting up python3-markupsafe (2.1.5-1build4) ... 94s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 96s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 96s Setting up hwdata (0.393-3) ... 96s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 96s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 96s Setting up linux-perf (6.14.0-10.10) ... 96s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 96s Setting up python3-gi (3.50.0-4build1) ... 96s Setting up pciutils (1:3.13.0-2) ... 96s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 96s Setting up curl (8.12.1-3ubuntu1) ... 96s Setting up linux-image-virtual (6.14.0-10.10) ... 96s Setting up linux-tools-common (6.14.0-10.10) ... 96s Setting up fwupd (2.0.6-4) ... 97s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 97s fwupd.service is a disabled or a static unit not running, not starting it. 97s Setting up python3-systemd (235-1build6) ... 97s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 97s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 97s Setting up linux-image-generic (6.14.0-10.10) ... 97s Setting up python3-dbus (1.3.2-5build5) ... 97s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 97s Setting up linux-generic (6.14.0-10.10) ... 97s Setting up python3-apt (2.9.9build1) ... 98s Setting up python3-yaml (6.0.2-1build2) ... 98s Setting up python3-lazr.uri (1.0.6-6) ... 98s Setting up binutils (2.44-3ubuntu1) ... 98s Setting up cloud-init-base (25.1-0ubuntu3) ... 100s Setting up linux-virtual (6.14.0-10.10) ... 100s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 100s Setting up cloud-init (25.1-0ubuntu3) ... 100s Processing triggers for systemd (257.3-1ubuntu3) ... 100s Processing triggers for man-db (2.13.0-1) ... 101s Processing triggers for dbus (1.16.2-1ubuntu1) ... 101s Processing triggers for libc-bin (2.41-1ubuntu1) ... 101s Processing triggers for initramfs-tools (0.146ubuntu1) ... 102s update-initramfs: Generating /boot/initrd.img-6.12.0-16-generic 102s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 113s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 113s /etc/kernel/postinst.d/initramfs-tools: 113s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 113s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 124s /etc/kernel/postinst.d/zz-update-grub: 124s Sourcing file `/etc/default/grub' 124s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 124s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 124s Generating grub configuration file ... 124s Found linux image: /boot/vmlinuz-6.14.0-10-generic 124s Found initrd image: /boot/initrd.img-6.14.0-10-generic 124s Found linux image: /boot/vmlinuz-6.12.0-16-generic 124s Found initrd image: /boot/initrd.img-6.12.0-16-generic 124s Found linux image: /boot/vmlinuz-6.11.0-8-generic 124s Found initrd image: /boot/initrd.img-6.11.0-8-generic 125s Warning: os-prober will not be executed to detect other bootable partitions. 125s Systems on them will not be added to the GRUB boot configuration. 125s Check GRUB_DISABLE_OS_PROBER documentation entry. 125s Adding boot menu entry for UEFI Firmware Settings ... 125s done 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 127s Solving dependencies... 127s The following packages will be REMOVED: 127s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 127s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 127s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 127s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 127s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 127s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 127s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 127s linux-tools-6.12.0-16-generic* 127s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 127s After this operation, 545 MB disk space will be freed. 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 127s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 127s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 127s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 127s Removing libpython3.12t64:amd64 (3.12.9-1) ... 127s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 127s Removing libnsl2:amd64 (1.3.0-3build3) ... 127s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 128s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 128s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 130s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 131s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 133s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 133s /etc/kernel/postrm.d/initramfs-tools: 133s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 133s /etc/kernel/postrm.d/zz-update-grub: 133s Sourcing file `/etc/default/grub' 133s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 133s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 133s Generating grub configuration file ... 134s Found linux image: /boot/vmlinuz-6.14.0-10-generic 134s Found initrd image: /boot/initrd.img-6.14.0-10-generic 134s Found linux image: /boot/vmlinuz-6.12.0-16-generic 134s Found initrd image: /boot/initrd.img-6.12.0-16-generic 134s Warning: os-prober will not be executed to detect other bootable partitions. 134s Systems on them will not be added to the GRUB boot configuration. 134s Check GRUB_DISABLE_OS_PROBER documentation entry. 134s Adding boot menu entry for UEFI Firmware Settings ... 134s done 134s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 134s W: Removing the running kernel 134s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 134s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 134s /etc/kernel/postrm.d/initramfs-tools: 134s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 134s /etc/kernel/postrm.d/zz-update-grub: 134s Sourcing file `/etc/default/grub' 134s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 134s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 134s Generating grub configuration file ... 135s Found linux image: /boot/vmlinuz-6.14.0-10-generic 135s Found initrd image: /boot/initrd.img-6.14.0-10-generic 135s Warning: os-prober will not be executed to detect other bootable partitions. 135s Systems on them will not be added to the GRUB boot configuration. 135s Check GRUB_DISABLE_OS_PROBER documentation entry. 135s Adding boot menu entry for UEFI Firmware Settings ... 135s done 135s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 135s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 137s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 137s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 137s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 137s Processing triggers for libc-bin (2.41-1ubuntu1) ... 137s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 137s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 137s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 137s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 137s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 137s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 137s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 137s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 137s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 138s autopkgtest [21:59:23]: upgrading testbed (apt dist-upgrade and autopurge) 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 138s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 139s Starting 2 pkgProblemResolver with broken count: 0 139s Done 139s Entering ResolveByKeep 140s 140s Calculating upgrade... 140s The following packages will be upgraded: 140s libc-bin libc-dev-bin libc6 libc6-dev locales 140s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 140s Need to get 10.5 MB of archives. 140s After this operation, 1024 B of additional disk space will be used. 140s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 140s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 140s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 140s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 140s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 140s Preconfiguring packages ... 141s Fetched 10.5 MB in 0s (74.5 MB/s) 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 141s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 141s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 141s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 141s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 141s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 141s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 141s Setting up libc6:amd64 (2.41-1ubuntu2) ... 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 141s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 141s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 141s Setting up libc-bin (2.41-1ubuntu2) ... 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 141s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 141s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 142s Setting up locales (2.41-1ubuntu2) ... 142s Generating locales (this might take a while)... 144s en_US.UTF-8... done 144s Generation complete. 144s Setting up libc-dev-bin (2.41-1ubuntu2) ... 144s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 144s Processing triggers for man-db (2.13.0-1) ... 144s Processing triggers for systemd (257.3-1ubuntu3) ... 145s Reading package lists... 146s Building dependency tree... 146s Reading state information... 146s Starting pkgProblemResolver with broken count: 0 146s Starting 2 pkgProblemResolver with broken count: 0 146s Done 146s Solving dependencies... 147s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 147s autopkgtest [21:59:32]: rebooting testbed after setup commands that affected boot 150s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 162s autopkgtest [21:59:47]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 163s autopkgtest [21:59:48]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-biovizbase 164s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biovizbase 1.54.0-2 (dsc) [2509 B] 164s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biovizbase 1.54.0-2 (tar) [2518 kB] 164s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biovizbase 1.54.0-2 (diff) [6484 B] 164s gpgv: Signature made Tue Jan 14 07:34:53 2025 UTC 164s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 164s gpgv: issuer "crusoe@debian.org" 164s gpgv: Can't check signature: No public key 164s dpkg-source: warning: cannot verify inline signature for ./r-bioc-biovizbase_1.54.0-2.dsc: no acceptable signature found 164s autopkgtest [21:59:49]: testing package r-bioc-biovizbase version 1.54.0-2 164s autopkgtest [21:59:49]: build not needed 169s autopkgtest [21:59:54]: test pkg-r-autopkgtest: preparing testbed 169s Reading package lists... 169s Building dependency tree... 169s Reading state information... 169s Starting pkgProblemResolver with broken count: 0 169s Starting 2 pkgProblemResolver with broken count: 0 169s Done 170s The following NEW packages will be installed: 170s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 170s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 170s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-14 170s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 170s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 170s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 170s javascript-common libasan8 libblas-dev libblas3 libboost-dev 170s libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev 170s libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 170s libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 170s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 170s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 170s libjs-highlight.js libjs-jquery libjs-jquery-datatables 170s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 170s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 170s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 170s liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev 170s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 170s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 170s libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 libreadline-dev 170s libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0 170s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 170s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler 170s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 170s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 170s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase 170s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings 170s r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray r-bioc-ensembldb 170s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 170s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 170s r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools 170s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 170s r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-variantannotation 170s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass 170s r-cran-backports r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 170s r-cran-bitops r-cran-blob r-cran-bslib r-cran-cachem r-cran-checkmate 170s r-cran-chron r-cran-cli r-cran-cluster r-cran-codetools r-cran-colorspace 170s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table 170s r-cran-dbi r-cran-deldir r-cran-dichromat r-cran-digest r-cran-dplyr 170s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome 170s r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger 170s r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue 170s r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-htmltable 170s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-interp 170s r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr 170s r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice 170s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 170s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 170s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet 170s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 170s r-cran-png r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 170s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 170s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart 170s r-cran-rsqlite r-cran-rstudioapi r-cran-runit r-cran-sass r-cran-scales 170s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 170s r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect 170s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite 170s r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml unzip 170s x11-common xdg-utils zip zlib1g-dev 170s 0 upgraded, 279 newly installed, 0 to remove and 0 not upgraded. 170s Need to get 365 MB of archives. 170s After this operation, 1161 MB of additional disk space will be used. 170s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 170s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 170s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 170s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 170s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 170s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 170s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 170s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 170s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 170s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 170s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 170s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 171s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 171s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 171s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 171s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 171s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 171s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 171s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 171s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 171s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 171s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 171s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 171s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 171s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 171s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 171s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 171s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 171s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 171s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 171s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 171s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 171s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 171s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 171s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 171s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 171s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 171s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 171s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 171s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 171s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 171s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 171s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 171s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 171s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 171s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB] 171s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 171s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 171s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 171s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 171s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 171s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 171s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 171s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 171s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 171s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 171s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 171s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 171s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 171s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 171s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 171s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 171s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 171s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 171s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 171s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 171s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 171s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 171s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 171s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 171s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 171s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 171s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 171s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 171s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 171s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 171s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 171s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 171s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 171s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 171s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 171s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 171s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 171s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 171s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 171s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 171s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 171s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 171s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 171s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 171s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 171s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 171s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 171s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 171s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 171s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 171s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 171s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 171s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 171s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 171s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 171s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 171s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 171s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 171s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 171s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 171s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 171s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 171s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 171s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 171s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 171s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 171s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 171s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 172s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 172s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 172s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 172s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 172s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 172s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 172s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 172s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 172s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 172s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 172s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 172s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 172s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 172s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 172s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 172s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 172s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 172s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 172s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 172s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB] 172s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 172s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 172s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 172s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 172s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 172s Get:140 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 172s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 172s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 172s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 172s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 172s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 172s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 172s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 172s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 172s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 172s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 172s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 172s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 172s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 172s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 172s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 172s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 172s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 172s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 172s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 172s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 172s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 172s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 172s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 172s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 172s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 172s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 172s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 172s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationfilter all 1.30.0+dfsg-2 [247 kB] 172s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 172s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 172s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 172s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 172s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 172s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 172s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 172s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 172s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 172s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 172s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 172s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 172s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 172s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 172s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 172s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 172s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 172s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 172s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 172s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 172s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB] 172s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 172s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 172s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 172s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 172s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 172s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 172s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 172s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 172s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 172s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cluster amd64 2.1.8.1-1 [579 kB] 172s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 172s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 172s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nnet amd64 7.3-20-1 [116 kB] 172s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-foreign amd64 0.8.88-1 [250 kB] 172s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 172s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-data.table amd64 1.17.0+dfsg-1 [2168 kB] 172s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 173s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 173s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 173s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 173s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 173s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 173s Get:212 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 173s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 173s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-backports amd64 1.5.0-2 [121 kB] 173s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-checkmate amd64 2.3.2-1 [706 kB] 173s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 173s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 173s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 173s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 173s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 173s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 173s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 173s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 173s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 173s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 173s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 173s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 173s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 173s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 173s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 173s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 173s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 173s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 173s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 173s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 173s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 173s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 173s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 173s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rstudioapi all 0.17.1-1 [299 kB] 173s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 173s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 173s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 173s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 173s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 173s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltable all 2.4.3-1 [388 kB] 173s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 173s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 173s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-chron amd64 2.3-62-1 [189 kB] 173s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB] 173s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 173s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 173s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 173s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 173s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-acepack amd64 1.6.1-1 [91.2 kB] 173s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hmisc amd64 5.2-2-1 [3584 kB] 173s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 173s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 173s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 173s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 173s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 173s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1392 kB] 173s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 173s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 173s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB] 173s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 173s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 173s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 173s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 173s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 173s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 173s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 173s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB] 173s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 173s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-bsgenome all 1.74.0-2 [7001 kB] 173s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-variantannotation amd64 1.52.0-2 [3642 kB] 173s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-protgenerics all 1.38.0-2 [239 kB] 173s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ensembldb all 2.30.0+dfsg-3 [1520 kB] 173s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biovizbase amd64 1.54.0-2 [2857 kB] 173s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 174s Preconfiguring packages ... 174s Fetched 365 MB in 3s (129 MB/s) 174s Selecting previously unselected package libisl23:amd64. 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 174s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 174s Unpacking libisl23:amd64 (0.27-1) ... 174s Selecting previously unselected package libmpc3:amd64. 174s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 174s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 174s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 174s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 174s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 174s Selecting previously unselected package cpp-14. 174s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 174s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 174s Selecting previously unselected package cpp-x86-64-linux-gnu. 174s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 174s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 174s Selecting previously unselected package cpp. 174s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 174s Unpacking cpp (4:14.2.0-1ubuntu1) ... 174s Selecting previously unselected package libcc1-0:amd64. 174s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 174s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 174s Selecting previously unselected package libgomp1:amd64. 175s Preparing to unpack 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177s Selecting previously unselected package fonts-glyphicons-halflings. 177s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 177s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 177s Selecting previously unselected package fonts-mathjax. 177s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 177s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 177s Selecting previously unselected package libgfortran5:amd64. 177s Preparing to unpack .../035-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 177s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 177s Selecting previously unselected package libgfortran-14-dev:amd64. 177s Preparing to unpack .../036-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 177s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 177s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 177s Preparing to unpack .../037-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb 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javascript-common (12) ... 177s Selecting previously unselected package libblas3:amd64. 177s Preparing to unpack .../043-libblas3_3.12.1-2_amd64.deb ... 177s Unpacking libblas3:amd64 (3.12.1-2) ... 177s Selecting previously unselected package libblas-dev:amd64. 178s Preparing to unpack .../044-libblas-dev_3.12.1-2_amd64.deb ... 178s Unpacking libblas-dev:amd64 (3.12.1-2) ... 178s Selecting previously unselected package libboost1.83-dev:amd64. 178s Preparing to unpack .../045-libboost1.83-dev_1.83.0-4.1ubuntu2_amd64.deb ... 178s Unpacking libboost1.83-dev:amd64 (1.83.0-4.1ubuntu2) ... 180s Selecting previously unselected package libboost-dev:amd64. 180s Preparing to unpack .../046-libboost-dev_1.83.0.2ubuntu1_amd64.deb ... 180s Unpacking libboost-dev:amd64 (1.83.0.2ubuntu1) ... 180s Selecting previously unselected package libbz2-dev:amd64. 180s Preparing to unpack .../047-libbz2-dev_1.0.8-6_amd64.deb ... 180s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 180s Selecting previously unselected package libpixman-1-0:amd64. 180s Preparing to unpack .../048-libpixman-1-0_0.44.0-3_amd64.deb ... 180s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 180s Selecting previously unselected package libxcb-render0:amd64. 180s Preparing to unpack .../049-libxcb-render0_1.17.0-2_amd64.deb ... 180s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 180s Selecting previously unselected package libxcb-shm0:amd64. 180s Preparing to unpack .../050-libxcb-shm0_1.17.0-2_amd64.deb ... 180s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 180s Selecting previously unselected package libxrender1:amd64. 180s Preparing to unpack .../051-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 180s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 180s Selecting previously unselected package libcairo2:amd64. 180s Preparing to unpack .../052-libcairo2_1.18.2-2_amd64.deb ... 180s Unpacking libcairo2:amd64 (1.18.2-2) ... 180s Selecting previously unselected package libdatrie1:amd64. 180s Preparing to unpack .../053-libdatrie1_0.2.13-3build1_amd64.deb ... 180s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 180s Selecting previously unselected package libdeflate0:amd64. 180s Preparing to unpack .../054-libdeflate0_1.23-1_amd64.deb ... 180s Unpacking libdeflate0:amd64 (1.23-1) ... 180s Selecting previously unselected package libdeflate-dev:amd64. 180s Preparing to unpack .../055-libdeflate-dev_1.23-1_amd64.deb ... 180s Unpacking libdeflate-dev:amd64 (1.23-1) ... 180s Selecting previously unselected package libgraphite2-3:amd64. 180s Preparing to unpack .../056-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 180s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 180s Selecting previously unselected package libharfbuzz0b:amd64. 180s Preparing to unpack .../057-libharfbuzz0b_10.2.0-1_amd64.deb ... 180s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 180s Selecting previously unselected package x11-common. 180s Preparing to unpack .../058-x11-common_1%3a7.7+23ubuntu3_all.deb ... 180s Unpacking x11-common (1:7.7+23ubuntu3) ... 180s Selecting previously unselected package libice6:amd64. 180s Preparing to unpack .../059-libice6_2%3a1.1.1-1_amd64.deb ... 180s Unpacking libice6:amd64 (2:1.1.1-1) ... 180s Selecting previously unselected package libicu-dev:amd64. 180s Preparing to unpack .../060-libicu-dev_76.1-1ubuntu2_amd64.deb ... 180s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 181s Selecting previously unselected package libjpeg-turbo8:amd64. 181s Preparing to unpack .../061-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 181s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 181s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 181s Preparing to unpack .../062-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ... 181s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 181s Selecting previously unselected package libjpeg8:amd64. 181s Preparing to unpack .../063-libjpeg8_8c-2ubuntu11_amd64.deb ... 181s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 181s Selecting previously unselected package libjpeg8-dev:amd64. 181s Preparing to unpack .../064-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 181s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 181s Selecting previously unselected package libjpeg-dev:amd64. 181s Preparing to unpack .../065-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 181s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 181s Selecting previously unselected package libjs-bootstrap. 181s Preparing to unpack .../066-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 181s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 181s Selecting previously unselected package libjs-popper.js. 181s Preparing to unpack .../067-libjs-popper.js_1.16.1+ds-6_all.deb ... 181s Unpacking libjs-popper.js (1.16.1+ds-6) ... 181s Selecting previously unselected package libjs-bootstrap4. 181s Preparing to unpack .../068-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 181s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 181s Selecting previously unselected package libjs-d3. 181s Preparing to unpack .../069-libjs-d3_3.5.17-4_all.deb ... 181s Unpacking libjs-d3 (3.5.17-4) ... 181s Selecting previously unselected package libjs-es5-shim. 181s Preparing to unpack .../070-libjs-es5-shim_4.6.7-2_all.deb ... 181s Unpacking libjs-es5-shim (4.6.7-2) ... 181s Selecting previously unselected package libjs-highlight.js. 181s Preparing to unpack .../071-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 181s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 181s Selecting previously unselected package libjs-jquery. 181s Preparing to unpack .../072-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 181s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 181s Selecting previously unselected package libjs-jquery-datatables. 181s Preparing to unpack .../073-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 181s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 181s Selecting previously unselected package libjs-sifter.js. 181s Preparing to unpack .../074-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 181s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 181s Selecting previously unselected package libjs-microplugin.js. 181s Preparing to unpack .../075-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 181s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 181s Selecting previously unselected package libjs-jquery-selectize.js. 181s Preparing to unpack .../076-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 181s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 181s Selecting previously unselected package libjs-jquery-ui. 181s Preparing to unpack .../077-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 181s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 181s Selecting previously unselected package libjs-json. 181s Preparing to unpack .../078-libjs-json_0~20221030+~1.0.8-1_all.deb ... 181s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 181s Selecting previously unselected package libjs-prettify. 181s Preparing to unpack .../079-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 181s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 181s Selecting previously unselected package liblapack3:amd64. 181s Preparing to unpack .../080-liblapack3_3.12.1-2_amd64.deb ... 181s Unpacking liblapack3:amd64 (3.12.1-2) ... 182s Selecting previously unselected package liblapack-dev:amd64. 182s Preparing to unpack .../081-liblapack-dev_3.12.1-2_amd64.deb ... 182s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 182s Selecting previously unselected package liblerc4:amd64. 182s Preparing to unpack .../082-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 182s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 182s Selecting previously unselected package liblua5.4-0:amd64. 182s Preparing to unpack .../083-liblua5.4-0_5.4.7-1_amd64.deb ... 182s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 182s Selecting previously unselected package libncurses-dev:amd64. 182s Preparing to unpack .../084-libncurses-dev_6.5+20250216-2_amd64.deb ... 182s Unpacking libncurses-dev:amd64 (6.5+20250216-2) ... 182s Selecting previously unselected package libthai-data. 182s Preparing to unpack .../085-libthai-data_0.1.29-2build1_all.deb ... 182s Unpacking libthai-data (0.1.29-2build1) ... 182s Selecting previously unselected package libthai0:amd64. 182s Preparing to unpack .../086-libthai0_0.1.29-2build1_amd64.deb ... 182s Unpacking libthai0:amd64 (0.1.29-2build1) ... 182s Selecting previously unselected package libpango-1.0-0:amd64. 182s Preparing to unpack .../087-libpango-1.0-0_1.56.2-1_amd64.deb ... 182s Unpacking libpango-1.0-0:amd64 (1.56.2-1) ... 182s Selecting previously unselected package libpangoft2-1.0-0:amd64. 182s Preparing to unpack .../088-libpangoft2-1.0-0_1.56.2-1_amd64.deb ... 182s Unpacking libpangoft2-1.0-0:amd64 (1.56.2-1) ... 182s Selecting previously unselected package libpangocairo-1.0-0:amd64. 182s Preparing to unpack .../089-libpangocairo-1.0-0_1.56.2-1_amd64.deb ... 182s Unpacking libpangocairo-1.0-0:amd64 (1.56.2-1) ... 182s Selecting previously unselected package libpaper2:amd64. 182s Preparing to unpack .../090-libpaper2_2.2.5-0.3_amd64.deb ... 182s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 182s Selecting previously unselected package libpaper-utils. 182s Preparing to unpack .../091-libpaper-utils_2.2.5-0.3_amd64.deb ... 182s Unpacking libpaper-utils (2.2.5-0.3) ... 182s Selecting previously unselected package libpcre2-16-0:amd64. 182s Preparing to unpack .../092-libpcre2-16-0_10.45-1_amd64.deb ... 182s Unpacking libpcre2-16-0:amd64 (10.45-1) ... 182s Selecting previously unselected package libpcre2-32-0:amd64. 182s Preparing to unpack .../093-libpcre2-32-0_10.45-1_amd64.deb ... 182s Unpacking libpcre2-32-0:amd64 (10.45-1) ... 182s Selecting previously unselected package libpcre2-posix3:amd64. 182s Preparing to unpack .../094-libpcre2-posix3_10.45-1_amd64.deb ... 182s Unpacking libpcre2-posix3:amd64 (10.45-1) ... 182s Selecting previously unselected package libpcre2-dev:amd64. 182s Preparing to unpack .../095-libpcre2-dev_10.45-1_amd64.deb ... 182s Unpacking libpcre2-dev:amd64 (10.45-1) ... 182s Selecting previously unselected package libpkgconf3:amd64. 182s Preparing to unpack .../096-libpkgconf3_1.8.1-4_amd64.deb ... 182s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 182s Selecting previously unselected package zlib1g-dev:amd64. 182s Preparing to unpack .../097-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 182s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 182s Selecting previously unselected package libpng-dev:amd64. 182s Preparing to unpack .../098-libpng-dev_1.6.47-1_amd64.deb ... 182s Unpacking libpng-dev:amd64 (1.6.47-1) ... 182s Selecting previously unselected package libreadline-dev:amd64. 182s Preparing to unpack .../099-libreadline-dev_8.2-6_amd64.deb ... 182s Unpacking libreadline-dev:amd64 (8.2-6) ... 182s Selecting previously unselected package libsharpyuv0:amd64. 182s Preparing to unpack .../100-libsharpyuv0_1.5.0-0.1_amd64.deb ... 182s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 182s Selecting previously unselected package libsm6:amd64. 183s Preparing to unpack .../101-libsm6_2%3a1.2.4-1_amd64.deb ... 183s Unpacking libsm6:amd64 (2:1.2.4-1) ... 183s Selecting previously unselected package libtcl8.6:amd64. 183s Preparing to unpack .../102-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 183s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 183s Selecting previously unselected package libjbig0:amd64. 183s Preparing to unpack .../103-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 183s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 183s Selecting previously unselected package libwebp7:amd64. 183s Preparing to unpack .../104-libwebp7_1.5.0-0.1_amd64.deb ... 183s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 183s Selecting previously unselected package libtiff6:amd64. 183s Preparing to unpack .../105-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 183s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 183s Selecting previously unselected package libxft2:amd64. 183s Preparing to unpack .../106-libxft2_2.3.6-1build1_amd64.deb ... 183s Unpacking libxft2:amd64 (2.3.6-1build1) ... 183s Selecting previously unselected package libxss1:amd64. 183s Preparing to unpack .../107-libxss1_1%3a1.2.3-1build3_amd64.deb ... 183s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 183s Selecting previously unselected package libtk8.6:amd64. 183s Preparing to unpack .../108-libtk8.6_8.6.16-1_amd64.deb ... 183s Unpacking libtk8.6:amd64 (8.6.16-1) ... 183s Selecting previously unselected package libxt6t64:amd64. 183s Preparing to unpack .../109-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 183s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 183s Selecting previously unselected package zip. 183s Preparing to unpack .../110-zip_3.0-14ubuntu2_amd64.deb ... 183s Unpacking zip (3.0-14ubuntu2) ... 183s Selecting previously unselected package unzip. 183s Preparing to unpack .../111-unzip_6.0-28ubuntu6_amd64.deb ... 183s Unpacking unzip (6.0-28ubuntu6) ... 183s Selecting previously unselected package xdg-utils. 183s Preparing to unpack .../112-xdg-utils_1.2.1-2ubuntu1_all.deb ... 183s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 183s Selecting previously unselected package r-base-core. 183s Preparing to unpack .../113-r-base-core_4.4.3-1_amd64.deb ... 183s Unpacking r-base-core (4.4.3-1) ... 183s Selecting previously unselected package r-cran-littler. 183s Preparing to unpack .../114-r-cran-littler_0.3.20-2_amd64.deb ... 183s Unpacking r-cran-littler (0.3.20-2) ... 183s Selecting previously unselected package littler. 183s Preparing to unpack .../115-littler_0.3.20-2_all.deb ... 183s Unpacking littler (0.3.20-2) ... 183s Selecting previously unselected package node-bootstrap-sass. 183s Preparing to unpack .../116-node-bootstrap-sass_3.4.3-2_all.deb ... 183s Unpacking node-bootstrap-sass (3.4.3-2) ... 184s Selecting previously unselected package node-html5shiv. 184s Preparing to unpack .../117-node-html5shiv_3.7.3+dfsg-5_all.deb ... 184s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 184s Selecting previously unselected package node-normalize.css. 184s Preparing to unpack .../118-node-normalize.css_8.0.1-5_all.deb ... 184s Unpacking node-normalize.css (8.0.1-5) ... 184s Selecting previously unselected package pandoc-data. 184s Preparing to unpack .../119-pandoc-data_3.1.11.1-3build1_all.deb ... 184s Unpacking pandoc-data (3.1.11.1-3build1) ... 184s Selecting previously unselected package pandoc. 184s Preparing to unpack .../120-pandoc_3.1.11.1+ds-2_amd64.deb ... 184s Unpacking pandoc (3.1.11.1+ds-2) ... 185s Selecting previously unselected package liblzma-dev:amd64. 185s Preparing to unpack .../121-liblzma-dev_5.6.4-1_amd64.deb ... 185s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 185s Selecting previously unselected package pkgconf-bin. 185s Preparing to unpack .../122-pkgconf-bin_1.8.1-4_amd64.deb ... 185s Unpacking pkgconf-bin (1.8.1-4) ... 185s Selecting previously unselected package pkgconf:amd64. 185s Preparing to unpack .../123-pkgconf_1.8.1-4_amd64.deb ... 185s Unpacking pkgconf:amd64 (1.8.1-4) ... 185s Selecting previously unselected package libtirpc-dev:amd64. 185s Preparing to unpack .../124-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 185s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 185s Selecting previously unselected package r-base-dev. 185s Preparing to unpack .../125-r-base-dev_4.4.3-1_all.deb ... 185s Unpacking r-base-dev (4.4.3-1) ... 185s Selecting previously unselected package pkg-r-autopkgtest. 185s Preparing to unpack .../126-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 185s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 185s Selecting previously unselected package r-bioc-biocgenerics. 185s Preparing to unpack .../127-r-bioc-biocgenerics_0.52.0-2_all.deb ... 185s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 185s Selecting previously unselected package r-bioc-biobase. 185s Preparing to unpack .../128-r-bioc-biobase_2.66.0-2_amd64.deb ... 185s Unpacking r-bioc-biobase (2.66.0-2) ... 185s Selecting previously unselected package r-bioc-s4vectors. 185s Preparing to unpack .../129-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 185s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 185s Selecting previously unselected package r-bioc-iranges. 185s Preparing to unpack .../130-r-bioc-iranges_2.40.1-2_amd64.deb ... 185s Unpacking r-bioc-iranges (2.40.1-2) ... 185s Selecting previously unselected package r-cran-dbi. 185s Preparing to unpack .../131-r-cran-dbi_1.2.3-1_all.deb ... 185s Unpacking r-cran-dbi (1.2.3-1) ... 185s Selecting previously unselected package r-cran-bit. 185s Preparing to unpack .../132-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 185s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 185s Selecting previously unselected package r-cran-bit64. 185s Preparing to unpack .../133-r-cran-bit64_4.6.0-1-1ubuntu2_amd64.deb ... 185s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 185s Selecting previously unselected package r-cran-rlang. 185s Preparing to unpack .../134-r-cran-rlang_1.1.5-1_amd64.deb ... 185s Unpacking r-cran-rlang (1.1.5-1) ... 185s Selecting previously unselected package r-cran-cli. 185s Preparing to unpack .../135-r-cran-cli_3.6.4-1_amd64.deb ... 185s Unpacking r-cran-cli (3.6.4-1) ... 185s Selecting previously unselected package r-cran-glue. 185s Preparing to unpack .../136-r-cran-glue_1.8.0-1_amd64.deb ... 185s Unpacking r-cran-glue (1.8.0-1) ... 185s Selecting previously unselected package r-cran-lifecycle. 185s Preparing to unpack .../137-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 185s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 185s Selecting previously unselected package r-cran-vctrs. 185s Preparing to unpack .../138-r-cran-vctrs_0.6.5-1_amd64.deb ... 185s Unpacking r-cran-vctrs (0.6.5-1) ... 185s Selecting previously unselected package r-cran-blob. 185s Preparing to unpack .../139-r-cran-blob_1.2.4-1_all.deb ... 185s Unpacking r-cran-blob (1.2.4-1) ... 185s Selecting previously unselected package r-cran-fastmap. 185s Preparing to unpack .../140-r-cran-fastmap_1.2.0-1_amd64.deb ... 185s Unpacking r-cran-fastmap (1.2.0-1) ... 186s Selecting previously unselected package r-cran-cachem. 186s Preparing to unpack .../141-r-cran-cachem_1.1.0-1_amd64.deb ... 186s Unpacking r-cran-cachem (1.1.0-1) ... 186s Selecting previously unselected package r-cran-memoise. 186s Preparing to unpack .../142-r-cran-memoise_2.0.1-1_all.deb ... 186s Unpacking r-cran-memoise (2.0.1-1) ... 186s Selecting previously unselected package r-cran-pkgconfig. 186s Preparing to unpack .../143-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 186s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 186s Selecting previously unselected package r-cran-plogr. 186s Preparing to unpack .../144-r-cran-plogr_0.2.0-3build1_all.deb ... 186s Unpacking r-cran-plogr (0.2.0-3build1) ... 186s Selecting previously unselected package r-cran-cpp11. 186s Preparing to unpack .../145-r-cran-cpp11_0.5.2-1_all.deb ... 186s Unpacking r-cran-cpp11 (0.5.2-1) ... 186s Selecting previously unselected package r-cran-rsqlite. 186s Preparing to unpack .../146-r-cran-rsqlite_2.3.9-1_amd64.deb ... 186s Unpacking r-cran-rsqlite (2.3.9-1) ... 186s Selecting previously unselected package r-cran-curl. 186s Preparing to unpack .../147-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 186s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 186s Selecting previously unselected package r-cran-jsonlite. 186s Preparing to unpack .../148-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 186s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 186s Selecting previously unselected package r-cran-mime. 186s Preparing to unpack .../149-r-cran-mime_0.12-2_amd64.deb ... 186s Unpacking r-cran-mime (0.12-2) ... 186s Selecting previously unselected package r-cran-sys. 186s Preparing to unpack .../150-r-cran-sys_3.4.3-1_amd64.deb ... 186s Unpacking r-cran-sys (3.4.3-1) ... 186s Selecting previously unselected package r-cran-askpass. 186s Preparing to unpack .../151-r-cran-askpass_1.2.1-1_amd64.deb ... 186s Unpacking r-cran-askpass (1.2.1-1) ... 186s Selecting previously unselected package r-cran-openssl. 186s Preparing to unpack .../152-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 186s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 186s Selecting previously unselected package r-cran-r6. 186s Preparing to unpack .../153-r-cran-r6_2.6.1-1_all.deb ... 186s Unpacking r-cran-r6 (2.6.1-1) ... 186s Selecting previously unselected package r-cran-httr. 186s Preparing to unpack .../154-r-cran-httr_1.4.7+dfsg-1_all.deb ... 186s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 186s Selecting previously unselected package r-cran-png. 186s Preparing to unpack .../155-r-cran-png_0.1-8-1build2_amd64.deb ... 186s Unpacking r-cran-png (0.1-8-1build2) ... 186s Selecting previously unselected package r-bioc-zlibbioc. 186s Preparing to unpack .../156-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 186s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 186s Selecting previously unselected package r-bioc-xvector. 186s Preparing to unpack .../157-r-bioc-xvector_0.46.0-2_amd64.deb ... 186s Unpacking r-bioc-xvector (0.46.0-2) ... 186s Selecting previously unselected package r-bioc-ucsc.utils. 186s Preparing to unpack .../158-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 186s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 186s Selecting previously unselected package r-bioc-genomeinfodbdata. 186s Preparing to unpack .../159-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 186s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 186s Selecting previously unselected package r-bioc-genomeinfodb. 186s Preparing to unpack .../160-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 186s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 187s Selecting previously unselected package r-cran-crayon. 187s Preparing to unpack .../161-r-cran-crayon_1.5.3-1_all.deb ... 187s Unpacking r-cran-crayon (1.5.3-1) ... 187s Selecting previously unselected package r-bioc-biostrings. 187s Preparing to unpack .../162-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 187s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 187s Selecting previously unselected package r-bioc-keggrest. 187s Preparing to unpack .../163-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 187s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 187s Selecting previously unselected package r-bioc-annotationdbi. 187s Preparing to unpack .../164-r-bioc-annotationdbi_1.68.0-2_all.deb ... 187s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 187s Selecting previously unselected package r-bioc-genomicranges. 187s Preparing to unpack .../165-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 187s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 187s Selecting previously unselected package r-cran-lazyeval. 187s Preparing to unpack .../166-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 187s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 187s Selecting previously unselected package r-bioc-annotationfilter. 187s Preparing to unpack .../167-r-bioc-annotationfilter_1.30.0+dfsg-2_all.deb ... 187s Unpacking r-bioc-annotationfilter (1.30.0+dfsg-2) ... 187s Selecting previously unselected package r-bioc-biocio. 187s Preparing to unpack .../168-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 187s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 187s Selecting previously unselected package r-cran-formatr. 187s Preparing to unpack .../169-r-cran-formatr_1.14-2_all.deb ... 187s Unpacking r-cran-formatr (1.14-2) ... 187s Selecting previously unselected package r-cran-lambda.r. 187s Preparing to unpack .../170-r-cran-lambda.r_1.2.4-2build1_all.deb ... 187s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 187s Selecting previously unselected package r-cran-futile.options. 187s Preparing to unpack .../171-r-cran-futile.options_1.0.1-3build1_all.deb ... 187s Unpacking r-cran-futile.options (1.0.1-3build1) ... 187s Selecting previously unselected package r-cran-futile.logger. 187s Preparing to unpack .../172-r-cran-futile.logger_1.4.3-4build1_all.deb ... 187s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 187s Selecting previously unselected package r-cran-snow. 187s Preparing to unpack .../173-r-cran-snow_1%3a0.4.4-2_all.deb ... 187s Unpacking r-cran-snow (1:0.4.4-2) ... 187s Selecting previously unselected package r-cran-codetools. 187s Preparing to unpack .../174-r-cran-codetools_0.2-20-1_all.deb ... 187s Unpacking r-cran-codetools (0.2-20-1) ... 187s Selecting previously unselected package r-cran-bh. 187s Preparing to unpack .../175-r-cran-bh_1.84.0-1_all.deb ... 187s Unpacking r-cran-bh (1.84.0-1) ... 187s Selecting previously unselected package r-bioc-biocparallel. 187s Preparing to unpack .../176-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 187s Unpacking r-bioc-biocparallel (1.40.0-2) ... 187s Selecting previously unselected package r-cran-farver. 187s Preparing to unpack .../177-r-cran-farver_2.1.2-1_amd64.deb ... 187s Unpacking r-cran-farver (2.1.2-1) ... 188s Selecting previously unselected package r-cran-labeling. 188s Preparing to unpack .../178-r-cran-labeling_0.4.3-1_all.deb ... 188s Unpacking r-cran-labeling (0.4.3-1) ... 188s Selecting previously unselected package r-cran-colorspace. 188s Preparing to unpack .../179-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 188s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 188s Selecting previously unselected package r-cran-munsell. 188s Preparing to unpack .../180-r-cran-munsell_0.5.1-1_all.deb ... 188s Unpacking r-cran-munsell (0.5.1-1) ... 188s Selecting previously unselected package r-cran-rcolorbrewer. 188s Preparing to unpack .../181-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 188s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 188s Selecting previously unselected package r-cran-viridislite. 188s Preparing to unpack .../182-r-cran-viridislite_0.4.2-2_all.deb ... 188s Unpacking r-cran-viridislite (0.4.2-2) ... 188s Selecting previously unselected package r-cran-scales. 188s Preparing to unpack .../183-r-cran-scales_1.3.0-1_all.deb ... 188s Unpacking r-cran-scales (1.3.0-1) ... 188s Selecting previously unselected package r-cran-gtable. 188s Preparing to unpack .../184-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 188s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 188s Selecting previously unselected package r-cran-isoband. 188s Preparing to unpack .../185-r-cran-isoband_0.2.7-1_amd64.deb ... 188s Unpacking r-cran-isoband (0.2.7-1) ... 188s Selecting previously unselected package r-cran-mass. 188s Preparing to unpack .../186-r-cran-mass_7.3-64-1_amd64.deb ... 188s Unpacking r-cran-mass (7.3-64-1) ... 188s Selecting previously unselected package r-cran-lattice. 188s Preparing to unpack .../187-r-cran-lattice_0.22-6-1_amd64.deb ... 188s Unpacking r-cran-lattice (0.22-6-1) ... 188s Selecting previously unselected package r-cran-nlme. 188s Preparing to unpack .../188-r-cran-nlme_3.1.167-1_amd64.deb ... 188s Unpacking r-cran-nlme (3.1.167-1) ... 188s Selecting previously unselected package r-cran-matrix. 188s Preparing to unpack .../189-r-cran-matrix_1.7-3-1_amd64.deb ... 188s Unpacking r-cran-matrix (1.7-3-1) ... 188s Selecting previously unselected package r-cran-mgcv. 188s Preparing to unpack .../190-r-cran-mgcv_1.9-1-1_amd64.deb ... 188s Unpacking r-cran-mgcv (1.9-1-1) ... 188s Selecting previously unselected package r-cran-fansi. 188s Preparing to unpack .../191-r-cran-fansi_1.0.5-1_amd64.deb ... 188s Unpacking r-cran-fansi (1.0.5-1) ... 188s Selecting previously unselected package r-cran-magrittr. 188s Preparing to unpack .../192-r-cran-magrittr_2.0.3-1_amd64.deb ... 188s Unpacking r-cran-magrittr (2.0.3-1) ... 188s Selecting previously unselected package r-cran-utf8. 188s Preparing to unpack .../193-r-cran-utf8_1.2.4-1_amd64.deb ... 188s Unpacking r-cran-utf8 (1.2.4-1) ... 188s Selecting previously unselected package r-cran-pillar. 188s Preparing to unpack .../194-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 188s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 188s Selecting previously unselected package r-cran-tibble. 188s Preparing to unpack .../195-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 188s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 188s Selecting previously unselected package r-cran-withr. 188s Preparing to unpack .../196-r-cran-withr_3.0.2+dfsg-1_all.deb ... 188s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 188s Selecting previously unselected package r-cran-ggplot2. 188s Preparing to unpack .../197-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 188s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 189s Selecting previously unselected package r-cran-cluster. 189s Preparing to unpack .../198-r-cran-cluster_2.1.8.1-1_amd64.deb ... 189s Unpacking r-cran-cluster (2.1.8.1-1) ... 189s Selecting previously unselected package r-cran-survival. 189s Preparing to unpack .../199-r-cran-survival_3.8-3-1_amd64.deb ... 189s Unpacking r-cran-survival (3.8-3-1) ... 189s Selecting previously unselected package r-cran-rpart. 189s Preparing to unpack .../200-r-cran-rpart_4.1.24-1_amd64.deb ... 189s Unpacking r-cran-rpart (4.1.24-1) ... 189s Selecting previously unselected package r-cran-nnet. 189s Preparing to unpack .../201-r-cran-nnet_7.3-20-1_amd64.deb ... 189s Unpacking r-cran-nnet (7.3-20-1) ... 189s Selecting previously unselected package r-cran-foreign. 189s Preparing to unpack .../202-r-cran-foreign_0.8.88-1_amd64.deb ... 189s Unpacking r-cran-foreign (0.8.88-1) ... 189s Selecting previously unselected package r-cran-gridextra. 189s Preparing to unpack .../203-r-cran-gridextra_2.3-3build1_all.deb ... 189s Unpacking r-cran-gridextra (2.3-3build1) ... 189s Selecting previously unselected package r-cran-data.table. 189s Preparing to unpack .../204-r-cran-data.table_1.17.0+dfsg-1_amd64.deb ... 189s Unpacking r-cran-data.table (1.17.0+dfsg-1) ... 189s Selecting previously unselected package r-cran-stringi. 189s Preparing to unpack .../205-r-cran-stringi_1.8.4-1build1_amd64.deb ... 189s Unpacking r-cran-stringi (1.8.4-1build1) ... 189s Selecting previously unselected package r-cran-stringr. 189s Preparing to unpack .../206-r-cran-stringr_1.5.1-1_all.deb ... 189s Unpacking r-cran-stringr (1.5.1-1) ... 189s Selecting previously unselected package r-cran-evaluate. 189s Preparing to unpack .../207-r-cran-evaluate_1.0.3-1_all.deb ... 189s Unpacking r-cran-evaluate (1.0.3-1) ... 189s Selecting previously unselected package r-cran-xfun. 189s Preparing to unpack .../208-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 189s Unpacking r-cran-xfun (0.51+dfsg-1) ... 189s Selecting previously unselected package r-cran-highr. 189s Preparing to unpack .../209-r-cran-highr_0.11+dfsg-1_all.deb ... 189s Unpacking r-cran-highr (0.11+dfsg-1) ... 189s Selecting previously unselected package r-cran-yaml. 189s Preparing to unpack .../210-r-cran-yaml_2.3.10-1_amd64.deb ... 189s Unpacking r-cran-yaml (2.3.10-1) ... 189s Selecting previously unselected package libjs-mathjax. 189s Preparing to unpack .../211-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 189s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 190s Selecting previously unselected package r-cran-knitr. 190s Preparing to unpack .../212-r-cran-knitr_1.49+dfsg-1_all.deb ... 190s Unpacking r-cran-knitr (1.49+dfsg-1) ... 190s Selecting previously unselected package r-cran-backports. 190s Preparing to unpack .../213-r-cran-backports_1.5.0-2_amd64.deb ... 190s Unpacking r-cran-backports (1.5.0-2) ... 190s Selecting previously unselected package r-cran-checkmate. 190s Preparing to unpack .../214-r-cran-checkmate_2.3.2-1_amd64.deb ... 190s Unpacking r-cran-checkmate (2.3.2-1) ... 190s Selecting previously unselected package r-cran-base64enc. 190s Preparing to unpack .../215-r-cran-base64enc_0.1-3-3_amd64.deb ... 190s Unpacking r-cran-base64enc (0.1-3-3) ... 190s Selecting previously unselected package r-cran-digest. 190s Preparing to unpack .../216-r-cran-digest_0.6.37-1_amd64.deb ... 190s Unpacking r-cran-digest (0.6.37-1) ... 190s Selecting previously unselected package r-cran-htmltools. 190s Preparing to unpack .../217-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 190s Unpacking r-cran-htmltools (0.5.8.1-1) ... 190s Selecting previously unselected package r-cran-jquerylib. 190s Preparing to unpack .../218-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 190s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 191s Selecting previously unselected package r-cran-fs. 191s Preparing to unpack .../219-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 191s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 191s Selecting previously unselected package r-cran-rappdirs. 191s Preparing to unpack .../220-r-cran-rappdirs_0.3.3-1_amd64.deb ... 191s Unpacking r-cran-rappdirs (0.3.3-1) ... 191s Selecting previously unselected package r-cran-sass. 191s Preparing to unpack .../221-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 191s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 191s Selecting previously unselected package r-cran-bslib. 191s Preparing to unpack .../222-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 191s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 191s Selecting previously unselected package r-cran-fontawesome. 191s Preparing to unpack .../223-r-cran-fontawesome_0.5.3-1_all.deb ... 191s Unpacking r-cran-fontawesome (0.5.3-1) ... 191s Selecting previously unselected package r-cran-tinytex. 191s Preparing to unpack .../224-r-cran-tinytex_0.56-1_all.deb ... 191s Unpacking r-cran-tinytex (0.56-1) ... 191s Selecting previously unselected package libjs-modernizr. 191s Preparing to unpack .../225-libjs-modernizr_3.13.0-0.1_all.deb ... 191s Unpacking libjs-modernizr (3.13.0-0.1) ... 191s Selecting previously unselected package r-cran-pkgkitten. 191s Preparing to unpack .../226-r-cran-pkgkitten_0.2.4-1_all.deb ... 191s Unpacking r-cran-pkgkitten (0.2.4-1) ... 191s Selecting previously unselected package r-cran-rcpp. 191s Preparing to unpack .../227-r-cran-rcpp_1.0.14-1_amd64.deb ... 191s Unpacking r-cran-rcpp (1.0.14-1) ... 191s Selecting previously unselected package r-cran-later. 191s Preparing to unpack .../228-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 191s Unpacking r-cran-later (1.4.1+dfsg-1) ... 191s Selecting previously unselected package r-cran-promises. 191s Preparing to unpack .../229-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 191s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 191s Selecting previously unselected package r-cran-httpuv. 191s Preparing to unpack .../230-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 191s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 191s Selecting previously unselected package r-cran-xtable. 191s Preparing to unpack .../231-r-cran-xtable_1%3a1.8-4-2_all.deb ... 191s Unpacking r-cran-xtable (1:1.8-4-2) ... 191s Selecting previously unselected package r-cran-sourcetools. 191s Preparing to unpack .../232-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 191s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 191s Selecting previously unselected package r-cran-commonmark. 191s Preparing to unpack .../233-r-cran-commonmark_1.9.2-2_amd64.deb ... 191s Unpacking r-cran-commonmark (1.9.2-2) ... 191s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 191s Preparing to unpack .../234-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 191s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 191s Selecting previously unselected package r-cran-shiny. 191s Preparing to unpack .../235-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 191s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 192s Selecting previously unselected package r-cran-rmarkdown. 192s Preparing to unpack .../236-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 192s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 192s Selecting previously unselected package r-cran-htmlwidgets. 192s Preparing to unpack .../237-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 192s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 192s Selecting previously unselected package r-cran-rstudioapi. 192s Preparing to unpack .../238-r-cran-rstudioapi_0.17.1-1_all.deb ... 192s Unpacking r-cran-rstudioapi (0.17.1-1) ... 192s Selecting previously unselected package r-cran-generics. 192s Preparing to unpack .../239-r-cran-generics_0.1.3-1_all.deb ... 192s Unpacking r-cran-generics (0.1.3-1) ... 192s Selecting previously unselected package r-cran-tidyselect. 192s Preparing to unpack .../240-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 192s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 192s Selecting previously unselected package r-cran-dplyr. 192s Preparing to unpack .../241-r-cran-dplyr_1.1.4-4_amd64.deb ... 192s Unpacking r-cran-dplyr (1.1.4-4) ... 192s Selecting previously unselected package r-cran-purrr. 192s Preparing to unpack .../242-r-cran-purrr_1.0.4-1_amd64.deb ... 192s Unpacking r-cran-purrr (1.0.4-1) ... 192s Selecting previously unselected package r-cran-tidyr. 192s Preparing to unpack .../243-r-cran-tidyr_1.3.1-1_amd64.deb ... 192s Unpacking r-cran-tidyr (1.3.1-1) ... 192s Selecting previously unselected package r-cran-htmltable. 192s Preparing to unpack .../244-r-cran-htmltable_2.4.3-1_all.deb ... 192s Unpacking r-cran-htmltable (2.4.3-1) ... 192s Selecting previously unselected package r-cran-viridis. 192s Preparing to unpack .../245-r-cran-viridis_0.6.5-1_all.deb ... 192s Unpacking r-cran-viridis (0.6.5-1) ... 192s Selecting previously unselected package r-cran-formula. 192s Preparing to unpack .../246-r-cran-formula_1.2-5-1_all.deb ... 192s Unpacking r-cran-formula (1.2-5-1) ... 192s Selecting previously unselected package r-cran-chron. 192s Preparing to unpack .../247-r-cran-chron_2.3-62-1_amd64.deb ... 192s Unpacking r-cran-chron (2.3-62-1) ... 192s Selecting previously unselected package r-cran-jpeg. 192s Preparing to unpack .../248-r-cran-jpeg_0.1-10-1_amd64.deb ... 192s Unpacking r-cran-jpeg (0.1-10-1) ... 192s Selecting previously unselected package r-cran-deldir. 192s Preparing to unpack .../249-r-cran-deldir_2.0-4-1build1_amd64.deb ... 192s Unpacking r-cran-deldir (2.0-4-1build1) ... 192s Selecting previously unselected package r-cran-rcppeigen. 192s Preparing to unpack .../250-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 192s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 192s Selecting previously unselected package r-cran-interp. 192s Preparing to unpack .../251-r-cran-interp_1.1-6-1_amd64.deb ... 192s Unpacking r-cran-interp (1.1-6-1) ... 192s Selecting previously unselected package r-cran-latticeextra. 192s Preparing to unpack .../252-r-cran-latticeextra_0.6-30-1_all.deb ... 192s Unpacking r-cran-latticeextra (0.6-30-1) ... 193s Selecting previously unselected package r-cran-acepack. 193s Preparing to unpack .../253-r-cran-acepack_1.6.1-1_amd64.deb ... 193s Unpacking r-cran-acepack (1.6.1-1) ... 193s Selecting previously unselected package r-cran-hmisc. 193s Preparing to unpack .../254-r-cran-hmisc_5.2-2-1_amd64.deb ... 193s Unpacking r-cran-hmisc (5.2-2-1) ... 193s Selecting previously unselected package r-cran-dichromat. 193s Preparing to unpack .../255-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 193s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 193s Selecting previously unselected package r-cran-matrixstats. 193s Preparing to unpack .../256-r-cran-matrixstats_1.5.0-1_amd64.deb ... 193s Unpacking r-cran-matrixstats (1.5.0-1) ... 193s Selecting previously unselected package r-bioc-matrixgenerics. 193s Preparing to unpack .../257-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 193s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 193s Selecting previously unselected package r-cran-abind. 193s Preparing to unpack .../258-r-cran-abind_1.4-8-1_all.deb ... 193s Unpacking r-cran-abind (1.4-8-1) ... 193s Selecting previously unselected package r-bioc-s4arrays. 193s Preparing to unpack .../259-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 193s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 193s Selecting previously unselected package r-bioc-sparsearray. 193s Preparing to unpack .../260-r-bioc-sparsearray_1.6.2+dfsg-1_amd64.deb ... 193s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 193s Selecting previously unselected package r-bioc-delayedarray. 193s Preparing to unpack .../261-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 193s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 193s Selecting previously unselected package r-bioc-summarizedexperiment. 193s Preparing to unpack .../262-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 193s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 193s Selecting previously unselected package r-cran-bitops. 193s Preparing to unpack .../263-r-cran-bitops_1.0-9-1_amd64.deb ... 193s Unpacking r-cran-bitops (1.0-9-1) ... 193s Selecting previously unselected package r-bioc-rhtslib. 193s Preparing to unpack .../264-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ... 193s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 193s Selecting previously unselected package r-bioc-rsamtools. 193s Preparing to unpack .../265-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ... 193s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 193s Selecting previously unselected package r-bioc-genomicalignments. 193s Preparing to unpack .../266-r-bioc-genomicalignments_1.42.0-2_amd64.deb ... 193s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 193s Selecting previously unselected package r-cran-xml. 193s Preparing to unpack .../267-r-cran-xml_3.99-0.18-1_amd64.deb ... 193s Unpacking r-cran-xml (3.99-0.18-1) ... 193s Selecting previously unselected package r-cran-rcurl. 193s Preparing to unpack .../268-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 193s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 193s Selecting previously unselected package r-cran-rjson. 193s Preparing to unpack .../269-r-cran-rjson_0.2.23-1_amd64.deb ... 193s Unpacking r-cran-rjson (0.2.23-1) ... 193s Selecting previously unselected package r-cran-restfulr. 193s Preparing to unpack .../270-r-cran-restfulr_0.0.15-1_amd64.deb ... 193s Unpacking r-cran-restfulr (0.0.15-1) ... 194s Selecting previously unselected package r-bioc-rtracklayer. 194s Preparing to unpack .../271-r-bioc-rtracklayer_1.66.0-2_amd64.deb ... 194s Unpacking r-bioc-rtracklayer 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Selecting previously unselected package r-bioc-biovizbase. 194s Preparing to unpack .../277-r-bioc-biovizbase_1.54.0-2_amd64.deb ... 194s Unpacking r-bioc-biovizbase (1.54.0-2) ... 194s Selecting previously unselected package r-cran-runit. 194s Preparing to unpack .../278-r-cran-runit_0.4.33-1_all.deb ... 194s Unpacking r-cran-runit (0.4.33-1) ... 194s Setting up libjs-json (0~20221030+~1.0.8-1) ... 194s Setting up javascript-common (12) ... 194s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 194s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 194s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 194s Setting up libncurses-dev:amd64 (6.5+20250216-2) ... 194s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 194s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 194s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 194s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 194s Setting up libdatrie1:amd64 (0.2.13-3build1) ... 194s Setting up libjs-popper.js (1.16.1+ds-6) ... 194s Setting up libxcb-render0:amd64 (1.17.0-2) ... 194s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 194s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 194s Setting up unzip (6.0-28ubuntu6) ... 194s Setting up x11-common (1:7.7+23ubuntu3) ... 194s Setting up node-html5shiv (3.7.3+dfsg-5) ... 194s Setting up libdeflate0:amd64 (1.23-1) ... 194s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 194s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 194s Setting up libreadline-dev:amd64 (8.2-6) ... 194s Setting up libgomp1:amd64 (15-20250222-0ubuntu1) ... 194s Setting up libjs-modernizr (3.13.0-0.1) ... 194s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 194s Setting up libpcre2-16-0:amd64 (10.45-1) ... 194s Setting up libjs-es5-shim (4.6.7-2) ... 194s Setting up zip (3.0-14ubuntu2) ... 194s Setting up libpcre2-32-0:amd64 (10.45-1) ... 194s Setting up libblas3:amd64 (3.12.1-2) ... 194s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide 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199s Processing triggers for install-info (7.1.1-1) ... 199s Processing triggers for libc-bin (2.41-1ubuntu2) ... 200s autopkgtest [22:00:25]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 200s autopkgtest [22:00:25]: test pkg-r-autopkgtest: [----------------------- 200s Test: Try to load the R library biovizBase 200s 200s R version 4.4.3 (2025-02-28) -- "Trophy Case" 200s Copyright (C) 2025 The R Foundation for Statistical Computing 200s Platform: x86_64-pc-linux-gnu 200s 200s R is free software and comes with ABSOLUTELY NO WARRANTY. 200s You are welcome to redistribute it under certain conditions. 200s Type 'license()' or 'licence()' for distribution details. 200s 200s R is a collaborative project with many contributors. 200s Type 'contributors()' for more information and 200s 'citation()' on how to cite R or R packages in publications. 200s 200s Type 'demo()' for some demos, 'help()' for on-line help, or 200s 'help.start()' for an HTML browser interface to help. 200s Type 'q()' to quit R. 200s 200s > library('biovizBase') 212s > 212s > 212s Other tests are currently unsupported! 212s They will be progressively added. 212s autopkgtest [22:00:37]: test pkg-r-autopkgtest: -----------------------] 212s autopkgtest [22:00:37]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 212s pkg-r-autopkgtest PASS 212s autopkgtest [22:00:37]: @@@@@@@@@@@@@@@@@@@@ summary 212s pkg-r-autopkgtest PASS 228s nova [W] Skipping flock for amd64 228s Creating nova instance adt-plucky-amd64-r-bioc-biovizbase-20250315-215704-juju-7f2275-prod-proposed-migration-environment-2-dd8e4f09-b946-45d9-861e-4b1ec453d22b from image adt/ubuntu-plucky-amd64-server-20250306.img (UUID 60d877d7-b74c-4f24-920d-f4570db0a338)... 228s nova [W] Timed out waiting for 2c09373c-b860-4c1a-a593-e4815fc69cc2 to get deleted.