0s autopkgtest [21:56:59]: starting date and time: 2025-03-15 21:56:59+0000 0s autopkgtest [21:56:59]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [21:56:59]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ybw6_yoc/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-biostrings --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@lcy02-8.secgroup --name adt-plucky-amd64-r-bioc-biostrings-20250315-215659-juju-7f2275-prod-proposed-migration-environment-20-373afba7-8829-4796-8be4-28f39f67c46f --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 49s autopkgtest [21:57:48]: testbed dpkg architecture: amd64 50s autopkgtest [21:57:49]: testbed apt version: 2.9.31ubuntu1 50s autopkgtest [21:57:49]: @@@@@@@@@@@@@@@@@@@@ test bed setup 50s autopkgtest [21:57:49]: testbed release detected to be: None 50s autopkgtest [21:57:49]: updating testbed package index (apt update) 50s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 50s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 50s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 50s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 50s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 50s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 50s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 50s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 50s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 50s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 50s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 50s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 50s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 50s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 50s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 50s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 50s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 51s Fetched 1265 kB in 0s (5557 kB/s) 51s Reading package lists... 52s Reading package lists... 52s Building dependency tree... 52s Reading state information... 52s Calculating upgrade... 52s Calculating upgrade... 53s The following package was automatically installed and is no longer required: 53s libnl-genl-3-200 53s Use 'sudo apt autoremove' to remove it. 53s The following NEW packages will be installed: 53s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 53s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 53s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 53s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 53s The following packages will be upgraded: 53s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 53s cloud-init cloud-init-base curl dosfstools fwupd gir1.2-girepository-2.0 53s gir1.2-glib-2.0 htop hwdata libapparmor1 libapt-pkg7.0 libaudit-common 53s libaudit1 libbinutils libbrotli1 libcap-ng0 libctf-nobfd0 libctf0 53s libcurl3t64-gnutls libcurl4t64 libestr0 libfwupd3 libgirepository-1.0-1 53s libglib2.0-0t64 libglib2.0-data libgprofng0 libjemalloc2 liblz4-1 liblzma5 53s libmm-glib0 libncurses6 libncursesw6 libnl-3-200 libnl-genl-3-200 53s libnl-route-3-200 libpci3 libpython3-stdlib libpython3.13 53s libpython3.13-minimal libpython3.13-stdlib libselinux1 libsframe1 53s libsqlite3-0 libtinfo6 libxml2 linux-firmware linux-generic 53s linux-headers-generic linux-headers-virtual linux-image-generic 53s linux-image-virtual linux-libc-dev linux-tools-common linux-virtual 53s media-types ncurses-base ncurses-bin ncurses-term pci.ids pciutils 53s pinentry-curses python-apt-common python3 python3-apt python3-cffi-backend 53s python3-dbus python3-gi python3-jinja2 python3-lazr.uri python3-markupsafe 53s python3-minimal python3-systemd python3-yaml python3.13 python3.13-gdbm 53s python3.13-minimal rsync rsyslog strace xz-utils 53s 86 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 53s Need to get 807 MB of archives. 53s After this operation, 326 MB of additional disk space will be used. 53s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 53s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 53s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 53s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 53s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 53s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 53s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 53s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 53s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 53s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 53s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 53s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 53s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 53s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 53s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 53s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 53s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 53s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 53s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 53s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 53s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 53s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 53s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 53s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 53s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 53s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 53s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 53s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 53s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 53s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 53s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 53s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 53s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 53s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 53s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 53s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 53s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 53s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 53s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 53s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 53s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 53s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 53s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 53s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 53s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 53s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 53s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 53s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 53s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 53s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 53s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 53s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 53s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 53s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 53s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 53s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 53s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 53s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 53s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 53s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 53s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 53s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 53s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 53s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 53s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 53s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 53s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 53s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 53s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 53s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 53s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 53s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 53s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 53s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 53s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 53s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 53s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 53s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 58s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 59s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 59s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 60s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 60s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 60s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 60s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 60s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 60s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 60s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 60s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 60s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 60s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 60s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 60s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 60s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 60s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 60s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 60s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 60s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 61s Preconfiguring packages ... 61s Fetched 807 MB in 8s (107 MB/s) 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 61s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ... 61s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ... 61s Setting up ncurses-bin (6.5+20250216-2) ... 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 61s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... 61s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ... 61s Setting up ncurses-base (6.5+20250216-2) ... 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 61s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ... 61s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ... 62s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ... 62s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ... 62s Setting up liblz4-1:amd64 (1.10.0-4) ... 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 62s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ... 62s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ... 62s Setting up liblzma5:amd64 (5.6.4-1) ... 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 62s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 62s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 62s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 62s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 62s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 62s Setting up apt (2.9.33) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 63s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 63s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 63s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 63s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 63s Setting up python3-minimal (3.13.2-2) ... 63s (Reading database ... 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Preparing to unpack .../68-python3-systemd_235-1build6_amd64.deb ... 79s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 79s Preparing to unpack .../69-python3.13-gdbm_3.13.2-2_amd64.deb ... 79s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 79s Preparing to unpack .../70-cloud-init_25.1-0ubuntu3_all.deb ... 79s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 79s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 79s Setting up media-types (13.0.0) ... 79s Installing new version of config file /etc/mime.types ... 79s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 79s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 79s Setting up pci.ids (0.0~2025.03.09-1) ... 79s Setting up apt-utils (2.9.33) ... 79s Setting up libdebuginfod-common (0.192-4) ... 79s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 79s Setting up bpftool (7.6.0+6.14.0-10.10) ... 79s Setting up libestr0:amd64 (0.1.11-2) ... 79s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 79s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 79s Setting up dosfstools (4.2-1.2) ... 79s Setting up rsyslog (8.2412.0-2ubuntu2) ... 79s info: The user `syslog' is already a member of `adm'. 80s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 80s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 80s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 80s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 80s Setting up linux-headers-generic (6.14.0-10.10) ... 80s Setting up libjemalloc2:amd64 (5.3.0-3) ... 80s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 80s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 80s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 80s Installing new version of config file /etc/apparmor.d/openvpn ... 81s Reloading AppArmor profiles 83s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 83s No schema files found: doing nothing. 83s Setting up libglib2.0-data (2.84.0-1) ... 83s Setting up libncurses6:amd64 (6.5+20250216-2) ... 83s Setting up strace (6.13+ds-1ubuntu1) ... 83s Setting up xz-utils (5.6.4-1) ... 83s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 83s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 85s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 85s Setting up libpci3:amd64 (1:3.13.0-2) ... 85s Setting up python-apt-common (2.9.9build1) ... 85s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 85s Setting up pnp.ids (0.393-3) ... 85s Setting up libnl-3-200:amd64 (3.7.0-1) ... 85s Setting up python3.13-minimal (3.13.2-2) ... 85s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 85s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 85s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 85s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 85s Setting up rsync (3.4.1+ds1-3) ... 86s rsync.service is a disabled or a static unit not running, not starting it. 86s Setting up python3.13-gdbm (3.13.2-2) ... 86s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 86s Setting up ncurses-term (6.5+20250216-2) ... 86s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 86s Setting up libpython3.13:amd64 (3.13.2-2) ... 86s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 86s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 86s Setting up linux-headers-virtual (6.14.0-10.10) ... 86s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 86s Setting up python3.13 (3.13.2-2) ... 87s Setting up htop (3.4.0-2) ... 87s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 89s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 89s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 89s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 89s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 89s Setting up libfwupd3:amd64 (2.0.6-4) ... 89s Setting up python3 (3.13.2-2) ... 89s Setting up python3-markupsafe (2.1.5-1build4) ... 90s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 92s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 92s Setting up hwdata (0.393-3) ... 92s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 92s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 92s Setting up linux-perf (6.14.0-10.10) ... 92s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 92s Setting up python3-gi (3.50.0-4build1) ... 92s Setting up pciutils (1:3.13.0-2) ... 92s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 92s Setting up curl (8.12.1-3ubuntu1) ... 92s Setting up linux-image-virtual (6.14.0-10.10) ... 92s Setting up linux-tools-common (6.14.0-10.10) ... 92s Setting up fwupd (2.0.6-4) ... 93s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 93s fwupd.service is a disabled or a static unit not running, not starting it. 93s Setting up python3-systemd (235-1build6) ... 93s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 93s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 93s Setting up linux-image-generic (6.14.0-10.10) ... 93s Setting up python3-dbus (1.3.2-5build5) ... 93s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 93s Setting up linux-generic (6.14.0-10.10) ... 93s Setting up python3-apt (2.9.9build1) ... 93s Setting up python3-yaml (6.0.2-1build2) ... 93s Setting up python3-lazr.uri (1.0.6-6) ... 93s Setting up binutils (2.44-3ubuntu1) ... 93s Setting up cloud-init-base (25.1-0ubuntu3) ... 95s Setting up linux-virtual (6.14.0-10.10) ... 95s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 95s Setting up cloud-init (25.1-0ubuntu3) ... 95s Processing triggers for systemd (257.3-1ubuntu3) ... 95s Processing triggers for man-db (2.13.0-1) ... 96s Processing triggers for dbus (1.16.2-1ubuntu1) ... 96s Processing triggers for libc-bin (2.41-1ubuntu1) ... 96s Processing triggers for initramfs-tools (0.146ubuntu1) ... 96s update-initramfs: Generating /boot/initrd.img-6.12.0-16-generic 96s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 107s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 107s /etc/kernel/postinst.d/initramfs-tools: 107s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 107s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 118s /etc/kernel/postinst.d/zz-update-grub: 118s Sourcing file `/etc/default/grub' 118s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 118s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 118s Generating grub configuration file ... 118s Found linux image: /boot/vmlinuz-6.14.0-10-generic 118s Found initrd image: /boot/initrd.img-6.14.0-10-generic 118s Found linux image: /boot/vmlinuz-6.12.0-16-generic 118s Found initrd image: /boot/initrd.img-6.12.0-16-generic 118s Found linux image: /boot/vmlinuz-6.11.0-8-generic 118s Found initrd image: /boot/initrd.img-6.11.0-8-generic 118s Warning: os-prober will not be executed to detect other bootable partitions. 118s Systems on them will not be added to the GRUB boot configuration. 118s Check GRUB_DISABLE_OS_PROBER documentation entry. 118s Adding boot menu entry for UEFI Firmware Settings ... 118s done 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s Solving dependencies... 120s The following packages will be REMOVED: 120s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 120s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 120s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 120s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 120s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 120s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 120s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 120s linux-tools-6.12.0-16-generic* 121s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 121s After this operation, 545 MB disk space will be freed. 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 121s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 121s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 121s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 121s Removing libpython3.12t64:amd64 (3.12.9-1) ... 121s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 121s Removing libnsl2:amd64 (1.3.0-3build3) ... 121s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 121s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 121s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 123s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 124s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 126s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 126s /etc/kernel/postrm.d/initramfs-tools: 126s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 126s /etc/kernel/postrm.d/zz-update-grub: 126s Sourcing file `/etc/default/grub' 126s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 126s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 126s Generating grub configuration file ... 127s Found linux image: /boot/vmlinuz-6.14.0-10-generic 127s Found initrd image: /boot/initrd.img-6.14.0-10-generic 127s Found linux image: /boot/vmlinuz-6.12.0-16-generic 127s Found initrd image: /boot/initrd.img-6.12.0-16-generic 127s Warning: os-prober will not be executed to detect other bootable partitions. 127s Systems on them will not be added to the GRUB boot configuration. 127s Check GRUB_DISABLE_OS_PROBER documentation entry. 127s Adding boot menu entry for UEFI Firmware Settings ... 127s done 127s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 127s W: Removing the running kernel 127s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 127s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 127s /etc/kernel/postrm.d/initramfs-tools: 127s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 127s /etc/kernel/postrm.d/zz-update-grub: 127s Sourcing file `/etc/default/grub' 127s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 127s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 127s Generating grub configuration file ... 127s Found linux image: /boot/vmlinuz-6.14.0-10-generic 127s Found initrd image: /boot/initrd.img-6.14.0-10-generic 128s Warning: os-prober will not be executed to detect other bootable partitions. 128s Systems on them will not be added to the GRUB boot configuration. 128s Check GRUB_DISABLE_OS_PROBER documentation entry. 128s Adding boot menu entry for UEFI Firmware Settings ... 128s done 128s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 128s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 129s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 129s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 129s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 129s Processing triggers for libc-bin (2.41-1ubuntu1) ... 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 130s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 130s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 130s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 130s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 130s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 130s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 130s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 130s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 130s autopkgtest [21:59:09]: upgrading testbed (apt dist-upgrade and autopurge) 130s Reading package lists... 130s Building dependency tree... 130s Reading state information... 131s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 131s Starting 2 pkgProblemResolver with broken count: 0 131s Done 131s Entering ResolveByKeep 132s 132s Calculating upgrade... 132s The following packages will be upgraded: 132s libc-bin libc-dev-bin libc6 libc6-dev locales 132s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s Need to get 10.5 MB of archives. 132s After this operation, 1024 B of additional disk space will be used. 132s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 132s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 132s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 132s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 132s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 132s Preconfiguring packages ... 133s Fetched 10.5 MB in 0s (49.0 MB/s) 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 133s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 133s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 133s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 133s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 133s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 133s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 133s Setting up libc6:amd64 (2.41-1ubuntu2) ... 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 133s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 133s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 133s Setting up libc-bin (2.41-1ubuntu2) ... 134s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 134s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 134s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 134s Setting up locales (2.41-1ubuntu2) ... 134s Generating locales (this might take a while)... 136s en_US.UTF-8... done 136s Generation complete. 136s Setting up libc-dev-bin (2.41-1ubuntu2) ... 136s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 136s Processing triggers for man-db (2.13.0-1) ... 136s Processing triggers for systemd (257.3-1ubuntu3) ... 137s Reading package lists... 138s Building dependency tree... 138s Reading state information... 138s Starting pkgProblemResolver with broken count: 0 138s Starting 2 pkgProblemResolver with broken count: 0 138s Done 138s Solving dependencies... 138s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s autopkgtest [21:59:18]: rebooting testbed after setup commands that affected boot 142s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 154s autopkgtest [21:59:33]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 155s autopkgtest [21:59:34]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-biostrings 156s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biostrings 2.74.1+dfsg-2 (dsc) [2327 B] 156s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biostrings 2.74.1+dfsg-2 (tar) [12.1 MB] 156s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biostrings 2.74.1+dfsg-2 (diff) [5544 B] 156s gpgv: Signature made Sun Jan 12 14:09:29 2025 UTC 156s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 156s gpgv: issuer "crusoe@debian.org" 156s gpgv: Can't check signature: No public key 156s dpkg-source: warning: cannot verify inline signature for ./r-bioc-biostrings_2.74.1+dfsg-2.dsc: no acceptable signature found 157s autopkgtest [21:59:36]: testing package r-bioc-biostrings version 2.74.1+dfsg-2 157s autopkgtest [21:59:36]: build not needed 164s autopkgtest [21:59:43]: test pkg-r-autopkgtest: preparing testbed 164s Reading package lists... 164s Building dependency tree... 164s Reading state information... 165s Starting pkgProblemResolver with broken count: 0 165s Starting 2 pkgProblemResolver with broken count: 0 165s Done 165s The following NEW packages will be installed: 165s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 165s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 165s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 165s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 165s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 165s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 165s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 165s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 165s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 165s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 165s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 165s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 165s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 165s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 165s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 165s libjs-popper.js libjs-prettify libjs-sifter.js 165s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 165s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 165s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 165s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 165s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 165s libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev 165s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 165s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 165s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 165s libxss1 libxt6t64 libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv 165s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 165s r-base-core r-base-dev r-bioc-affy r-bioc-affyio r-bioc-annotationdbi 165s r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 165s r-bioc-biocstyle r-bioc-biocversion r-bioc-biostrings r-bioc-bsgenome 165s r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata 165s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 165s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-preprocesscore 165s r-bioc-pwalign r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 165s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 165s r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 165s r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager 165s r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown 165s r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli 165s r-cran-codetools r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon 165s r-cran-curl r-cran-dbi r-cran-desc r-cran-diffobj r-cran-digest 165s r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-formatr r-cran-fs 165s r-cran-futile.logger r-cran-futile.options r-cran-glue r-cran-highr 165s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite 165s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval 165s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix 165s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pkgbuild 165s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png 165s r-cran-praise r-cran-processx r-cran-promises r-cran-ps r-cran-r6 165s r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr r-cran-rex 165s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite 165s r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 165s r-cran-sys r-cran-testthat r-cran-tinytex r-cran-vctrs r-cran-waldo 165s r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml t1utils 165s tex-common texlive-base texlive-bibtex-extra texlive-binaries 165s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 165s 0 upgraded, 272 newly installed, 0 to remove and 0 not upgraded. 165s Need to get 436 MB of archives. 165s After this operation, 1351 MB of additional disk space will be used. 165s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 165s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 165s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 166s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 166s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 166s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 166s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 166s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 166s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 166s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 166s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 166s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 166s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 166s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 166s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 166s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 166s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 166s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 166s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 166s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 166s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 166s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 166s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 166s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 166s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 166s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 166s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 166s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 166s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 166s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 166s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 166s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 166s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 166s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 166s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 166s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 166s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 166s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 166s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 166s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 166s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 166s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 166s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 166s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 166s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 166s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 166s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 166s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 166s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 166s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB] 166s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 166s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 166s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 166s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 166s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 166s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 166s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 166s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 166s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 166s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 166s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 166s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 166s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 166s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 166s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 166s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 166s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 166s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 166s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 166s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 166s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 166s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 166s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 166s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 166s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 166s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 166s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 166s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 166s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 166s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 166s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 166s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 166s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 166s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 166s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 166s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB] 166s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 166s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 167s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 167s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 167s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 167s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 167s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 167s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 167s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 167s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 167s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 167s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 167s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 167s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 167s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 167s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 167s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 167s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 167s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 167s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 167s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 167s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB] 167s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 167s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 167s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 167s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB] 167s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 167s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 167s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB] 167s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 167s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 167s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 167s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 167s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 167s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 167s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 167s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 167s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 167s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 167s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 167s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 167s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 167s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 167s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 167s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 167s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 167s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 167s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 167s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 167s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 167s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 167s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 167s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 167s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 167s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 167s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 167s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 167s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 167s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 167s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 167s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 167s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-affyio amd64 1.76.0-2 [97.6 kB] 167s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 167s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-preprocesscore amd64 1.68.0+ds-2 [174 kB] 167s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-affy amd64 1.84.0-2 [2021 kB] 167s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 167s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 167s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 167s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 167s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB] 167s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 167s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 167s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 167s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 167s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 167s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 167s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 167s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 167s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 167s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 167s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 167s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 167s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 167s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 167s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 167s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 167s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 167s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 167s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 167s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 167s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 167s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 167s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 167s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 167s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 168s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 168s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 168s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 168s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 168s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 168s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 168s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 168s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 168s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 168s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 168s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 168s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 168s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 168s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 168s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 168s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 168s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 168s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 168s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 168s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 168s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 168s Get:203 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 168s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 168s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 168s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 168s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 168s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 168s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 168s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 168s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 168s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 168s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 168s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 168s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 168s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 168s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 168s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 168s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 168s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 168s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 168s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 168s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 168s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 168s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 168s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 168s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB] 168s Get:228 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 168s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB] 168s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB] 168s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB] 168s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 169s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 169s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 169s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 169s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 169s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB] 169s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 169s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 169s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 169s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 169s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 169s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 169s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 169s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 169s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1392 kB] 169s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 169s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 169s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 169s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 169s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 169s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 169s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB] 169s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-bsgenome all 1.74.0-2 [7001 kB] 169s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 169s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-pwalign amd64 1.2.0-2 [757 kB] 169s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 169s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 169s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 169s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 169s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 169s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rex all 1.2.1-1 [129 kB] 169s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 169s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 169s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 169s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 169s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] 169s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 169s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 169s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 169s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-2 [150 kB] 169s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 170s Preconfiguring packages ... 170s Fetched 436 MB in 4s (108 MB/s) 170s Selecting previously unselected package libisl23:amd64. 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 170s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 170s Unpacking libisl23:amd64 (0.27-1) ... 170s Selecting previously unselected package libmpc3:amd64. 170s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 170s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 170s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 170s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 170s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 171s Selecting previously unselected package cpp-14. 171s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 171s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 171s Selecting previously unselected package cpp-x86-64-linux-gnu. 171s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 171s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 171s Selecting previously unselected package cpp. 171s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 171s Unpacking cpp (4:14.2.0-1ubuntu1) ... 171s Selecting previously unselected package libcc1-0:amd64. 171s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 171s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 171s Selecting previously unselected package libgomp1:amd64. 171s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 171s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 171s Selecting previously unselected package libitm1:amd64. 171s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 171s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 171s Selecting previously unselected package libasan8:amd64. 171s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 171s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 171s Selecting previously unselected package liblsan0:amd64. 171s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 171s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 171s Selecting previously unselected package libtsan2:amd64. 171s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 171s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 171s Selecting previously unselected package libubsan1:amd64. 171s Preparing to unpack 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173s Selecting previously unselected package fonts-glyphicons-halflings. 173s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 173s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 173s Selecting previously unselected package fonts-lmodern. 173s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ... 173s Unpacking fonts-lmodern (2.005-1) ... 173s Selecting previously unselected package fonts-mathjax. 173s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 173s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 173s Selecting previously unselected package libgfortran5:amd64. 173s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 173s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 173s Selecting previously unselected package libgfortran-14-dev:amd64. 173s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 173s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) 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previously unselected package libkpathsea6:amd64. 178s Preparing to unpack .../085-libkpathsea6_2024.20240313.70630+ds-6_amd64.deb ... 178s Unpacking libkpathsea6:amd64 (2024.20240313.70630+ds-6) ... 178s Selecting previously unselected package liblapack3:amd64. 178s Preparing to unpack .../086-liblapack3_3.12.1-2_amd64.deb ... 178s Unpacking liblapack3:amd64 (3.12.1-2) ... 178s Selecting previously unselected package liblapack-dev:amd64. 178s Preparing to unpack .../087-liblapack-dev_3.12.1-2_amd64.deb ... 178s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 178s Selecting previously unselected package liblerc4:amd64. 178s Preparing to unpack .../088-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 178s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 178s Selecting previously unselected package liblua5.4-0:amd64. 178s Preparing to unpack .../089-liblua5.4-0_5.4.7-1_amd64.deb ... 178s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 178s Selecting previously unselected package libmpfi0:amd64. 178s 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libpcre2-32-0:amd64 (10.45-1) ... 178s Selecting previously unselected package libpcre2-posix3:amd64. 178s Preparing to unpack .../101-libpcre2-posix3_10.45-1_amd64.deb ... 178s Unpacking libpcre2-posix3:amd64 (10.45-1) ... 178s Selecting previously unselected package libpcre2-dev:amd64. 178s Preparing to unpack .../102-libpcre2-dev_10.45-1_amd64.deb ... 178s Unpacking libpcre2-dev:amd64 (10.45-1) ... 178s Selecting previously unselected package libpkgconf3:amd64. 178s Preparing to unpack .../103-libpkgconf3_1.8.1-4_amd64.deb ... 178s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 178s Selecting previously unselected package zlib1g-dev:amd64. 178s Preparing to unpack .../104-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 178s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 178s Selecting previously unselected package libpng-dev:amd64. 178s Preparing to unpack .../105-libpng-dev_1.6.47-1_amd64.deb ... 178s Unpacking libpng-dev:amd64 (1.6.47-1) ... 179s Selecting previously unselected package libpotrace0:amd64. 179s Preparing to unpack .../106-libpotrace0_1.16-2build1_amd64.deb ... 179s Unpacking libpotrace0:amd64 (1.16-2build1) ... 179s Selecting previously unselected package libptexenc1:amd64. 179s Preparing to unpack .../107-libptexenc1_2024.20240313.70630+ds-6_amd64.deb ... 179s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-6) ... 179s Selecting previously unselected package libreadline-dev:amd64. 179s Preparing to unpack .../108-libreadline-dev_8.2-6_amd64.deb ... 179s Unpacking libreadline-dev:amd64 (8.2-6) ... 179s Selecting previously unselected package libsharpyuv0:amd64. 179s Preparing to unpack .../109-libsharpyuv0_1.5.0-0.1_amd64.deb ... 179s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 179s Selecting previously unselected package libsm6:amd64. 179s Preparing to unpack .../110-libsm6_2%3a1.2.4-1_amd64.deb ... 179s Unpacking libsm6:amd64 (2:1.2.4-1) ... 179s Selecting previously unselected package libsynctex2:amd64. 179s Preparing to unpack .../111-libsynctex2_2024.20240313.70630+ds-6_amd64.deb ... 179s Unpacking libsynctex2:amd64 (2024.20240313.70630+ds-6) ... 179s Selecting previously unselected package libtcl8.6:amd64. 179s Preparing to unpack .../112-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 179s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 179s Selecting previously unselected package libteckit0:amd64. 179s Preparing to unpack .../113-libteckit0_2.5.12+ds1-1_amd64.deb ... 179s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 179s Selecting previously unselected package libtexlua53-5:amd64. 179s Preparing to unpack .../114-libtexlua53-5_2024.20240313.70630+ds-6_amd64.deb ... 179s Unpacking libtexlua53-5:amd64 (2024.20240313.70630+ds-6) ... 179s Selecting previously unselected package libjbig0:amd64. 179s Preparing to unpack .../115-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 179s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 179s Selecting previously unselected package libwebp7:amd64. 179s Preparing to unpack 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(1:1.2.1-1.2build1) ... 179s Selecting previously unselected package libxmu6:amd64. 179s Preparing to unpack .../122-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 179s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 179s Selecting previously unselected package libxpm4:amd64. 179s Preparing to unpack .../123-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 179s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 179s Selecting previously unselected package libxaw7:amd64. 179s Preparing to unpack .../124-libxaw7_2%3a1.0.16-1_amd64.deb ... 179s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 179s Selecting previously unselected package libxi6:amd64. 179s Preparing to unpack .../125-libxi6_2%3a1.8.2-1_amd64.deb ... 179s Unpacking libxi6:amd64 (2:1.8.2-1) ... 179s Selecting previously unselected package libzzip-0-13t64:amd64. 179s Preparing to unpack .../126-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 179s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 179s Selecting previously unselected package zip. 179s Preparing to unpack .../127-zip_3.0-14ubuntu2_amd64.deb ... 179s Unpacking zip (3.0-14ubuntu2) ... 179s Selecting previously unselected package unzip. 179s Preparing to unpack .../128-unzip_6.0-28ubuntu6_amd64.deb ... 179s Unpacking unzip (6.0-28ubuntu6) ... 179s Selecting previously unselected package xdg-utils. 179s Preparing to unpack .../129-xdg-utils_1.2.1-2ubuntu1_all.deb ... 179s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 179s Selecting previously unselected package r-base-core. 179s Preparing to unpack .../130-r-base-core_4.4.3-1_amd64.deb ... 179s Unpacking r-base-core (4.4.3-1) ... 180s Selecting previously unselected package r-cran-littler. 180s Preparing to unpack .../131-r-cran-littler_0.3.20-2_amd64.deb ... 180s Unpacking r-cran-littler (0.3.20-2) ... 180s Selecting previously unselected package littler. 180s Preparing to unpack .../132-littler_0.3.20-2_all.deb ... 180s Unpacking littler (0.3.20-2) ... 180s Selecting previously unselected package node-bootstrap-sass. 180s Preparing to unpack .../133-node-bootstrap-sass_3.4.3-2_all.deb ... 180s Unpacking node-bootstrap-sass (3.4.3-2) ... 180s Selecting previously unselected package node-html5shiv. 180s Preparing to unpack .../134-node-html5shiv_3.7.3+dfsg-5_all.deb ... 180s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 180s Selecting previously unselected package node-normalize.css. 180s Preparing to unpack .../135-node-normalize.css_8.0.1-5_all.deb ... 180s Unpacking node-normalize.css (8.0.1-5) ... 180s Selecting previously unselected package pandoc-data. 180s Preparing to unpack .../136-pandoc-data_3.1.11.1-3build1_all.deb ... 180s Unpacking pandoc-data (3.1.11.1-3build1) ... 180s Selecting previously unselected package pandoc. 180s Preparing to unpack .../137-pandoc_3.1.11.1+ds-2_amd64.deb ... 180s Unpacking pandoc (3.1.11.1+ds-2) ... 181s Selecting previously unselected package liblzma-dev:amd64. 181s Preparing to unpack .../138-liblzma-dev_5.6.4-1_amd64.deb ... 181s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 181s Selecting previously unselected package pkgconf-bin. 181s Preparing to unpack .../139-pkgconf-bin_1.8.1-4_amd64.deb ... 181s Unpacking pkgconf-bin (1.8.1-4) ... 181s Selecting previously unselected package pkgconf:amd64. 181s Preparing to unpack .../140-pkgconf_1.8.1-4_amd64.deb ... 181s Unpacking pkgconf:amd64 (1.8.1-4) ... 181s Selecting previously unselected package libtirpc-dev:amd64. 181s Preparing to unpack .../141-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 181s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 181s Selecting previously unselected package r-base-dev. 181s Preparing to unpack .../142-r-base-dev_4.4.3-1_all.deb ... 181s Unpacking r-base-dev (4.4.3-1) ... 181s Selecting previously unselected package pkg-r-autopkgtest. 181s Preparing to unpack .../143-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 181s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 181s Selecting previously unselected package r-bioc-biocgenerics. 181s Preparing to unpack .../144-r-bioc-biocgenerics_0.52.0-2_all.deb ... 181s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 181s Selecting previously unselected package r-bioc-biobase. 181s Preparing to unpack .../145-r-bioc-biobase_2.66.0-2_amd64.deb ... 181s Unpacking r-bioc-biobase (2.66.0-2) ... 181s Selecting previously unselected package r-bioc-zlibbioc. 181s Preparing to unpack .../146-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 181s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 181s Selecting previously unselected package r-bioc-affyio. 181s Preparing to unpack .../147-r-bioc-affyio_1.76.0-2_amd64.deb ... 181s Unpacking r-bioc-affyio (1.76.0-2) ... 181s Selecting previously unselected package r-cran-biocmanager. 181s Preparing to unpack .../148-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 181s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 181s Selecting previously unselected package r-bioc-preprocesscore. 181s Preparing to unpack .../149-r-bioc-preprocesscore_1.68.0+ds-2_amd64.deb ... 181s Unpacking r-bioc-preprocesscore (1.68.0+ds-2) ... 181s Selecting previously unselected package r-bioc-affy. 181s Preparing to unpack .../150-r-bioc-affy_1.84.0-2_amd64.deb ... 181s Unpacking r-bioc-affy (1.84.0-2) ... 181s Selecting previously unselected package r-bioc-s4vectors. 181s Preparing to unpack .../151-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 181s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 181s Selecting previously unselected package r-bioc-iranges. 181s Preparing to unpack .../152-r-bioc-iranges_2.40.1-2_amd64.deb ... 181s Unpacking r-bioc-iranges (2.40.1-2) ... 181s Selecting previously unselected package r-cran-dbi. 181s Preparing to unpack .../153-r-cran-dbi_1.2.3-1_all.deb ... 181s Unpacking r-cran-dbi (1.2.3-1) ... 182s Selecting previously unselected package r-cran-bit. 182s Preparing to unpack .../154-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 182s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 182s Selecting previously unselected package r-cran-bit64. 182s Preparing to unpack .../155-r-cran-bit64_4.6.0-1-1ubuntu2_amd64.deb ... 182s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 182s Selecting previously unselected package r-cran-rlang. 182s Preparing to unpack .../156-r-cran-rlang_1.1.5-1_amd64.deb ... 182s Unpacking r-cran-rlang (1.1.5-1) ... 182s Selecting previously unselected package r-cran-cli. 182s Preparing to unpack .../157-r-cran-cli_3.6.4-1_amd64.deb ... 182s Unpacking r-cran-cli (3.6.4-1) ... 182s Selecting previously unselected package r-cran-glue. 182s Preparing to unpack .../158-r-cran-glue_1.8.0-1_amd64.deb ... 182s Unpacking r-cran-glue (1.8.0-1) ... 182s Selecting previously unselected package r-cran-lifecycle. 182s Preparing to unpack .../159-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 182s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 182s Selecting previously unselected package r-cran-vctrs. 182s Preparing to unpack .../160-r-cran-vctrs_0.6.5-1_amd64.deb ... 182s Unpacking r-cran-vctrs (0.6.5-1) ... 182s Selecting previously unselected package r-cran-blob. 182s Preparing to unpack .../161-r-cran-blob_1.2.4-1_all.deb ... 182s Unpacking r-cran-blob (1.2.4-1) ... 182s Selecting previously unselected package r-cran-fastmap. 182s Preparing to unpack .../162-r-cran-fastmap_1.2.0-1_amd64.deb ... 182s Unpacking r-cran-fastmap (1.2.0-1) ... 182s Selecting previously unselected package r-cran-cachem. 182s Preparing to unpack .../163-r-cran-cachem_1.1.0-1_amd64.deb ... 182s Unpacking r-cran-cachem (1.1.0-1) ... 182s Selecting previously unselected package r-cran-memoise. 182s Preparing to unpack .../164-r-cran-memoise_2.0.1-1_all.deb ... 182s Unpacking r-cran-memoise (2.0.1-1) ... 182s Selecting previously unselected package r-cran-pkgconfig. 182s Preparing to unpack .../165-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 182s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 182s Selecting previously unselected package r-cran-plogr. 182s Preparing to unpack .../166-r-cran-plogr_0.2.0-3build1_all.deb ... 182s Unpacking r-cran-plogr (0.2.0-3build1) ... 182s Selecting previously unselected package r-cran-cpp11. 182s Preparing to unpack .../167-r-cran-cpp11_0.5.2-1_all.deb ... 182s Unpacking r-cran-cpp11 (0.5.2-1) ... 182s Selecting previously unselected package r-cran-rsqlite. 182s Preparing to unpack .../168-r-cran-rsqlite_2.3.9-1_amd64.deb ... 182s Unpacking r-cran-rsqlite (2.3.9-1) ... 182s Selecting previously unselected package r-cran-curl. 182s Preparing to unpack .../169-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 182s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 182s Selecting previously unselected package r-cran-jsonlite. 182s Preparing to unpack .../170-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 182s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 182s Selecting previously unselected package r-cran-mime. 182s Preparing to unpack .../171-r-cran-mime_0.12-2_amd64.deb ... 182s Unpacking r-cran-mime (0.12-2) ... 182s Selecting previously unselected package r-cran-sys. 182s Preparing to unpack .../172-r-cran-sys_3.4.3-1_amd64.deb ... 182s Unpacking r-cran-sys (3.4.3-1) ... 182s Selecting previously unselected package r-cran-askpass. 182s Preparing to unpack .../173-r-cran-askpass_1.2.1-1_amd64.deb ... 182s Unpacking r-cran-askpass (1.2.1-1) ... 182s Selecting previously unselected package r-cran-openssl. 182s Preparing to unpack .../174-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 182s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 182s Selecting previously unselected package r-cran-r6. 182s Preparing to unpack .../175-r-cran-r6_2.6.1-1_all.deb ... 182s Unpacking r-cran-r6 (2.6.1-1) ... 182s Selecting previously unselected package r-cran-httr. 183s Preparing to unpack .../176-r-cran-httr_1.4.7+dfsg-1_all.deb ... 183s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 183s Selecting previously unselected package r-cran-png. 183s Preparing to unpack .../177-r-cran-png_0.1-8-1build2_amd64.deb ... 183s Unpacking r-cran-png (0.1-8-1build2) ... 183s Selecting previously unselected package r-bioc-xvector. 183s Preparing to unpack .../178-r-bioc-xvector_0.46.0-2_amd64.deb ... 183s Unpacking r-bioc-xvector (0.46.0-2) ... 183s Selecting previously unselected package r-bioc-ucsc.utils. 183s Preparing to unpack .../179-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 183s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 183s Selecting previously unselected package r-bioc-genomeinfodbdata. 183s Preparing to unpack .../180-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 183s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 183s Selecting previously unselected package r-bioc-genomeinfodb. 183s Preparing to unpack .../181-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 183s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 183s Selecting previously unselected package r-cran-crayon. 183s Preparing to unpack .../182-r-cran-crayon_1.5.3-1_all.deb ... 183s Unpacking r-cran-crayon (1.5.3-1) ... 183s Selecting previously unselected package r-bioc-biostrings. 183s Preparing to unpack .../183-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 183s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 183s Selecting previously unselected package r-bioc-keggrest. 183s Preparing to unpack .../184-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 183s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 183s Selecting previously unselected package r-bioc-annotationdbi. 183s Preparing to unpack .../185-r-bioc-annotationdbi_1.68.0-2_all.deb ... 183s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 183s Selecting previously unselected package r-bioc-biocio. 183s Preparing to unpack .../186-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 183s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 183s Selecting previously unselected package r-cran-formatr. 183s Preparing to unpack .../187-r-cran-formatr_1.14-2_all.deb ... 183s Unpacking r-cran-formatr (1.14-2) ... 183s Selecting previously unselected package r-cran-lambda.r. 183s Preparing to unpack .../188-r-cran-lambda.r_1.2.4-2build1_all.deb ... 183s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 183s Selecting previously unselected package r-cran-futile.options. 183s Preparing to unpack .../189-r-cran-futile.options_1.0.1-3build1_all.deb ... 183s Unpacking r-cran-futile.options (1.0.1-3build1) ... 183s Selecting previously unselected package r-cran-futile.logger. 183s Preparing to unpack .../190-r-cran-futile.logger_1.4.3-4build1_all.deb ... 183s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 183s Selecting previously unselected package r-cran-snow. 183s Preparing to unpack .../191-r-cran-snow_1%3a0.4.4-2_all.deb ... 183s Unpacking r-cran-snow (1:0.4.4-2) ... 183s Selecting previously unselected package r-cran-codetools. 183s Preparing to unpack .../192-r-cran-codetools_0.2-20-1_all.deb ... 183s Unpacking r-cran-codetools (0.2-20-1) ... 183s Selecting previously unselected package r-cran-bh. 183s Preparing to unpack .../193-r-cran-bh_1.84.0-1_all.deb ... 183s Unpacking r-cran-bh (1.84.0-1) ... 183s Selecting previously unselected package r-bioc-biocparallel. 183s Preparing to unpack .../194-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 183s Unpacking r-bioc-biocparallel (1.40.0-2) ... 183s Selecting previously unselected package r-cran-base64enc. 183s Preparing to unpack .../195-r-cran-base64enc_0.1-3-3_amd64.deb ... 183s Unpacking r-cran-base64enc (0.1-3-3) ... 183s Selecting previously unselected package r-cran-digest. 183s Preparing to unpack .../196-r-cran-digest_0.6.37-1_amd64.deb ... 183s Unpacking r-cran-digest (0.6.37-1) ... 183s Selecting previously unselected package r-cran-htmltools. 183s Preparing to unpack .../197-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 183s Unpacking r-cran-htmltools (0.5.8.1-1) ... 184s Selecting previously unselected package r-cran-evaluate. 184s Preparing to unpack .../198-r-cran-evaluate_1.0.3-1_all.deb ... 184s Unpacking r-cran-evaluate (1.0.3-1) ... 184s Selecting previously unselected package r-cran-xfun. 184s Preparing to unpack .../199-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 184s Unpacking r-cran-xfun (0.51+dfsg-1) ... 184s Selecting previously unselected package r-cran-highr. 184s Preparing to unpack .../200-r-cran-highr_0.11+dfsg-1_all.deb ... 184s Unpacking r-cran-highr (0.11+dfsg-1) ... 184s Selecting previously unselected package r-cran-yaml. 184s Preparing to unpack .../201-r-cran-yaml_2.3.10-1_amd64.deb ... 184s Unpacking r-cran-yaml (2.3.10-1) ... 184s Selecting previously unselected package libjs-mathjax. 184s Preparing to unpack .../202-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 184s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 184s Selecting previously unselected package r-cran-knitr. 184s Preparing to unpack .../203-r-cran-knitr_1.49+dfsg-1_all.deb ... 184s Unpacking r-cran-knitr (1.49+dfsg-1) ... 184s Selecting previously unselected package r-cran-jquerylib. 185s Preparing to unpack .../204-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 185s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 185s Selecting previously unselected package r-cran-fs. 185s Preparing to unpack .../205-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 185s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 185s Selecting previously unselected package r-cran-rappdirs. 185s Preparing to unpack .../206-r-cran-rappdirs_0.3.3-1_amd64.deb ... 185s Unpacking r-cran-rappdirs (0.3.3-1) ... 185s Selecting previously unselected package r-cran-sass. 185s Preparing to unpack .../207-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 185s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 185s Selecting previously unselected package r-cran-bslib. 185s Preparing to unpack .../208-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 185s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 185s Selecting previously unselected package r-cran-fontawesome. 185s Preparing to unpack .../209-r-cran-fontawesome_0.5.3-1_all.deb ... 185s Unpacking r-cran-fontawesome (0.5.3-1) ... 185s Selecting previously unselected package r-cran-tinytex. 185s Preparing to unpack .../210-r-cran-tinytex_0.56-1_all.deb ... 185s Unpacking r-cran-tinytex (0.56-1) ... 185s Selecting previously unselected package libjs-modernizr. 185s Preparing to unpack .../211-libjs-modernizr_3.13.0-0.1_all.deb ... 185s Unpacking libjs-modernizr (3.13.0-0.1) ... 185s Selecting previously unselected package r-cran-pkgkitten. 185s Preparing to unpack .../212-r-cran-pkgkitten_0.2.4-1_all.deb ... 185s Unpacking r-cran-pkgkitten (0.2.4-1) ... 185s Selecting previously unselected package r-cran-rcpp. 185s Preparing to unpack .../213-r-cran-rcpp_1.0.14-1_amd64.deb ... 185s Unpacking r-cran-rcpp (1.0.14-1) ... 185s Selecting previously unselected package r-cran-later. 185s Preparing to unpack .../214-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 185s Unpacking r-cran-later (1.4.1+dfsg-1) ... 185s Selecting previously unselected package r-cran-magrittr. 185s Preparing to unpack .../215-r-cran-magrittr_2.0.3-1_amd64.deb ... 185s Unpacking r-cran-magrittr (2.0.3-1) ... 185s Selecting previously unselected package r-cran-promises. 185s Preparing to unpack .../216-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 185s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 185s Selecting previously unselected package r-cran-httpuv. 185s Preparing to unpack .../217-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 185s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 185s Selecting previously unselected package r-cran-xtable. 185s Preparing to unpack .../218-r-cran-xtable_1%3a1.8-4-2_all.deb ... 185s Unpacking r-cran-xtable (1:1.8-4-2) ... 185s Selecting previously unselected package r-cran-sourcetools. 185s Preparing to unpack .../219-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 185s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 185s Selecting previously unselected package r-cran-withr. 185s Preparing to unpack .../220-r-cran-withr_3.0.2+dfsg-1_all.deb ... 185s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 185s Selecting previously unselected package r-cran-commonmark. 185s Preparing to unpack .../221-r-cran-commonmark_1.9.2-2_amd64.deb ... 185s Unpacking r-cran-commonmark (1.9.2-2) ... 186s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 186s Preparing to unpack .../222-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 186s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 186s Selecting previously unselected package r-cran-shiny. 186s Preparing to unpack .../223-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 186s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 186s Selecting previously unselected package r-cran-rmarkdown. 186s Preparing to unpack .../224-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 186s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 186s Selecting previously unselected package r-cran-bookdown. 186s Preparing to unpack .../225-r-cran-bookdown_0.42+dfsg-1_all.deb ... 186s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 186s Selecting previously unselected package tex-common. 186s Preparing to unpack .../226-tex-common_6.19_all.deb ... 186s Unpacking tex-common (6.19) ... 186s Selecting previously unselected package t1utils. 186s Preparing to unpack .../227-t1utils_1.41-4build3_amd64.deb ... 186s Unpacking t1utils (1.41-4build3) ... 186s Selecting previously unselected package texlive-binaries. 186s Preparing to unpack .../228-texlive-binaries_2024.20240313.70630+ds-6_amd64.deb ... 186s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ... 186s Selecting previously unselected package texlive-base. 186s Preparing to unpack .../229-texlive-base_2024.20250114-1_all.deb ... 186s Unpacking texlive-base (2024.20250114-1) ... 187s Selecting previously unselected package texlive-latex-base. 187s Preparing to unpack .../230-texlive-latex-base_2024.20250114-1_all.deb ... 187s Unpacking texlive-latex-base (2024.20250114-1) ... 187s Selecting previously unselected package texlive-bibtex-extra. 187s Preparing to unpack .../231-texlive-bibtex-extra_2024.20250114-1_all.deb ... 187s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 189s Selecting previously unselected package r-bioc-biocversion. 189s Preparing to unpack .../232-r-bioc-biocversion_3.20.0-2_all.deb ... 189s Unpacking r-bioc-biocversion (3.20.0-2) ... 189s Selecting previously unselected package r-bioc-biocstyle. 189s Preparing to unpack .../233-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 189s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 189s Selecting previously unselected package r-bioc-genomicranges. 189s Preparing to unpack .../234-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 189s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 190s Selecting previously unselected package r-cran-xml. 190s Preparing to unpack .../235-r-cran-xml_3.99-0.18-1_amd64.deb ... 190s Unpacking r-cran-xml (3.99-0.18-1) ... 190s Selecting previously unselected package r-cran-bitops. 190s Preparing to unpack .../236-r-cran-bitops_1.0-9-1_amd64.deb ... 190s Unpacking r-cran-bitops (1.0-9-1) ... 190s Selecting previously unselected package r-bioc-rhtslib. 190s Preparing to unpack .../237-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ... 190s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 190s Selecting previously unselected package r-bioc-rsamtools. 190s Preparing to unpack .../238-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ... 190s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 190s Selecting previously unselected package r-cran-matrixstats. 190s Preparing to unpack .../239-r-cran-matrixstats_1.5.0-1_amd64.deb ... 190s Unpacking r-cran-matrixstats (1.5.0-1) ... 190s Selecting previously unselected package r-bioc-matrixgenerics. 190s Preparing to unpack .../240-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 190s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 190s Selecting previously unselected package r-cran-lattice. 190s Preparing to unpack .../241-r-cran-lattice_0.22-6-1_amd64.deb ... 190s Unpacking r-cran-lattice (0.22-6-1) ... 190s Selecting previously unselected package r-cran-matrix. 190s Preparing to unpack .../242-r-cran-matrix_1.7-3-1_amd64.deb ... 190s Unpacking r-cran-matrix (1.7-3-1) ... 190s Selecting previously unselected package r-cran-abind. 190s Preparing to unpack .../243-r-cran-abind_1.4-8-1_all.deb ... 190s Unpacking r-cran-abind (1.4-8-1) ... 190s Selecting previously unselected package r-bioc-s4arrays. 190s Preparing to unpack .../244-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 190s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 190s Selecting previously unselected package r-bioc-sparsearray. 190s Preparing to unpack .../245-r-bioc-sparsearray_1.6.2+dfsg-1_amd64.deb ... 190s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 190s Selecting previously unselected package r-bioc-delayedarray. 190s Preparing to unpack .../246-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 190s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 190s Selecting previously unselected package r-bioc-summarizedexperiment. 190s Preparing to unpack .../247-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 190s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 190s Selecting previously unselected package r-bioc-genomicalignments. 190s Preparing to unpack .../248-r-bioc-genomicalignments_1.42.0-2_amd64.deb ... 190s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 190s Selecting previously unselected package r-cran-rcurl. 190s Preparing to unpack .../249-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 190s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 190s Selecting previously unselected package r-cran-rjson. 190s Preparing to unpack .../250-r-cran-rjson_0.2.23-1_amd64.deb ... 190s Unpacking r-cran-rjson (0.2.23-1) ... 191s Selecting previously unselected package r-cran-restfulr. 191s Preparing to unpack .../251-r-cran-restfulr_0.0.15-1_amd64.deb ... 191s Unpacking r-cran-restfulr (0.0.15-1) ... 191s Selecting previously unselected package r-bioc-rtracklayer. 191s Preparing to unpack .../252-r-bioc-rtracklayer_1.66.0-2_amd64.deb ... 191s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 191s Selecting previously unselected package r-bioc-bsgenome. 191s Preparing to unpack .../253-r-bioc-bsgenome_1.74.0-2_all.deb ... 191s Unpacking r-bioc-bsgenome (1.74.0-2) ... 191s Selecting previously unselected package r-bioc-genomicfeatures. 191s Preparing to unpack .../254-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ... 191s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 191s Selecting previously unselected package r-bioc-pwalign. 191s Preparing to unpack .../255-r-bioc-pwalign_1.2.0-2_amd64.deb ... 191s Unpacking r-bioc-pwalign (1.2.0-2) ... 191s Selecting previously unselected package r-cran-brio. 191s Preparing to unpack .../256-r-cran-brio_1.1.5-1_amd64.deb ... 191s Unpacking r-cran-brio (1.1.5-1) ... 191s Selecting previously unselected package r-cran-ps. 191s Preparing to unpack .../257-r-cran-ps_1.9.0-1_amd64.deb ... 191s Unpacking r-cran-ps (1.9.0-1) ... 191s Selecting previously unselected package r-cran-processx. 191s Preparing to unpack .../258-r-cran-processx_3.8.6-1_amd64.deb ... 191s Unpacking r-cran-processx (3.8.6-1) ... 191s Selecting previously unselected package r-cran-callr. 191s Preparing to unpack .../259-r-cran-callr_3.7.6-1_all.deb ... 191s Unpacking r-cran-callr (3.7.6-1) ... 191s Selecting previously unselected package r-cran-lazyeval. 191s Preparing to unpack .../260-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 191s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 191s Selecting previously unselected package r-cran-rex. 191s Preparing to unpack .../261-r-cran-rex_1.2.1-1_all.deb ... 191s Unpacking r-cran-rex (1.2.1-1) ... 191s Selecting previously unselected package r-cran-covr. 191s Preparing to unpack .../262-r-cran-covr_3.6.4+dfsg-1_amd64.deb ... 191s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 191s Selecting previously unselected package r-cran-desc. 191s Preparing to unpack .../263-r-cran-desc_1.4.3-1_all.deb ... 191s Unpacking r-cran-desc (1.4.3-1) ... 191s Selecting previously unselected package r-cran-diffobj. 191s Preparing to unpack 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unselected package r-cran-waldo. 192s Preparing to unpack .../270-r-cran-waldo_0.6.1-2_all.deb ... 192s Unpacking r-cran-waldo (0.6.1-2) ... 192s Selecting previously unselected package r-cran-testthat. 192s Preparing to unpack .../271-r-cran-testthat_3.2.3-1_amd64.deb ... 192s Unpacking r-cran-testthat (3.2.3-1) ... 192s Setting up libjs-json (0~20221030+~1.0.8-1) ... 192s Setting up javascript-common (12) ... 192s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 192s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 192s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 192s Setting up libncurses-dev:amd64 (6.5+20250216-2) ... 192s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 192s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 192s Setting up libxpm4:amd64 (1:3.5.17-1build2) ... 192s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 192s Setting up libxi6:amd64 (2:1.8.2-1) ... 192s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 192s Setting up libdatrie1:amd64 (0.2.13-3build1) ... 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192s Setting up node-bootstrap-sass (3.4.3-2) ... 192s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 192s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 192s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 192s Setting up libpaper2:amd64 (2.2.5-0.3) ... 192s Setting up pandoc-data (3.1.11.1-3build1) ... 192s Setting up libtsan2:amd64 (15-20250222-0ubuntu1) ... 192s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 193s Setting up libisl23:amd64 (0.27-1) ... 193s Setting up libdeflate-dev:amd64 (1.23-1) ... 193s Setting up node-normalize.css (8.0.1-5) ... 193s Setting up libicu-dev:amd64 (76.1-1ubuntu2) ... 193s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 193s Setting up xdg-utils (1.2.1-2ubuntu1) ... 193s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 193s Setting up libcc1-0:amd64 (15-20250222-0ubuntu1) ... 193s Setting up liblsan0:amd64 (15-20250222-0ubuntu1) ... 193s Setting up libblas-dev:amd64 (3.12.1-2) ... 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update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 197s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 197s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 197s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 197s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 197s Setting up texlive-bibtex-extra (2024.20250114-1) ... 197s Setting up r-cran-httr (1.4.7+dfsg-1) ... 197s Setting up r-bioc-affy (1.84.0-2) ... 197s Setting up r-cran-memoise (2.0.1-1) ... 197s Setting up r-cran-covr (3.6.4+dfsg-1) ... 197s Setting up r-cran-promises (1.3.2+dfsg-1) ... 197s Setting up r-cran-blob (1.2.4-1) ... 197s Setting up r-bioc-xvector (0.46.0-2) ... 197s Setting up r-cran-pkgbuild (1.4.6-1) 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r-bioc-keggrest (1.46.0+dfsg-2) ... 197s Setting up r-bioc-annotationdbi (1.68.0-2) ... 197s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 197s Setting up r-bioc-genomicalignments (1.42.0-2) ... 197s Setting up r-bioc-rtracklayer (1.66.0-2) ... 197s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 197s Setting up r-bioc-bsgenome (1.74.0-2) ... 197s Processing triggers for libc-bin (2.41-1ubuntu2) ... 197s Processing triggers for man-db (2.13.0-1) ... 199s Processing triggers for install-info (7.1.1-1) ... 199s Processing triggers for tex-common (6.19) ... 199s Running updmap-sys. This may take some time... done. 199s Running mktexlsr /var/lib/texmf ... done. 199s Building format(s) --all. 230s This may take some time... done. 230s autopkgtest [22:00:49]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 230s autopkgtest [22:00:49]: test pkg-r-autopkgtest: [----------------------- 230s Test: Try to load the R library Biostrings 230s 230s R version 4.4.3 (2025-02-28) -- "Trophy Case" 230s Copyright (C) 2025 The R Foundation for Statistical Computing 230s Platform: x86_64-pc-linux-gnu 230s 230s R is free software and comes with ABSOLUTELY NO WARRANTY. 230s You are welcome to redistribute it under certain conditions. 230s Type 'license()' or 'licence()' for distribution details. 230s 230s R is a collaborative project with many contributors. 230s Type 'contributors()' for more information and 230s 'citation()' on how to cite R or R packages in publications. 230s 230s Type 'demo()' for some demos, 'help()' for on-line help, or 230s 'help.start()' for an HTML browser interface to help. 230s Type 'q()' to quit R. 230s 230s > library('Biostrings') 230s Loading required package: BiocGenerics 231s 231s Attaching package: ‘BiocGenerics’ 231s 231s The following objects are masked from ‘package:stats’: 231s 231s IQR, mad, sd, var, xtabs 231s 231s The following objects are masked from ‘package:base’: 231s 231s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 231s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 231s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 231s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 231s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 231s table, tapply, union, unique, unsplit, which.max, which.min 231s 231s Loading required package: S4Vectors 231s Loading required package: stats4 231s 231s Attaching package: ‘S4Vectors’ 231s 231s The following object is masked from ‘package:utils’: 231s 231s findMatches 231s 231s The following objects are masked from ‘package:base’: 231s 231s expand.grid, I, unname 231s 231s Loading required package: IRanges 232s Loading required package: XVector 232s Loading required package: GenomeInfoDb 233s 233s Attaching package: ‘Biostrings’ 233s 233s The following object is masked from ‘package:base’: 233s 233s strsplit 233s 233s > 233s > 233s Other tests are currently unsupported! 233s They will be progressively added. 233s autopkgtest [22:00:52]: test pkg-r-autopkgtest: -----------------------] 233s autopkgtest [22:00:52]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 233s pkg-r-autopkgtest PASS 233s autopkgtest [22:00:52]: @@@@@@@@@@@@@@@@@@@@ summary 233s pkg-r-autopkgtest PASS 257s nova [W] Skipping flock for amd64 257s Creating nova instance adt-plucky-amd64-r-bioc-biostrings-20250315-215659-juju-7f2275-prod-proposed-migration-environment-20-373afba7-8829-4796-8be4-28f39f67c46f from image adt/ubuntu-plucky-amd64-server-20250306.img (UUID 60d877d7-b74c-4f24-920d-f4570db0a338)... 257s nova [W] Timed out waiting for e983a16b-f94c-4f74-8a10-cbb89a6252ae to get deleted.