0s autopkgtest [13:13:12]: starting date and time: 2025-03-15 13:13:12+0000
  0s autopkgtest [13:13:12]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [13:13:12]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.9ke577hc/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-biocparallel --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-13.secgroup --name adt-plucky-amd64-r-bioc-biocparallel-20250315-131312-juju-7f2275-prod-proposed-migration-environment-15-771fe8dc-31dd-4c33-ae33-8412a5af8e63 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 92s autopkgtest [13:14:44]: testbed dpkg architecture: amd64
 93s autopkgtest [13:14:45]: testbed apt version: 2.9.31ubuntu1
 93s autopkgtest [13:14:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 93s autopkgtest [13:14:45]: testbed release detected to be: None
 94s autopkgtest [13:14:46]: updating testbed package index (apt update)
 95s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
 95s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 95s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 95s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 95s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
 95s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB]
 95s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB]
 96s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [90.3 kB]
 96s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [64.9 kB]
 96s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [2004 B]
 96s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B]
 96s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [179 kB]
 96s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [359 kB]
 96s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [17.1 kB]
 96s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8452 B]
 96s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [17.0 kB]
 96s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [912 B]
 97s Fetched 1385 kB in 2s (813 kB/s)
 97s Reading package lists...
 98s + lsb_release --codename --short
 98s + RELEASE=plucky
 98s + cat
 98s + [ plucky != trusty ]
 98s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade
 98s Reading package lists...
 99s Building dependency tree...
 99s Reading state information...
 99s Calculating upgrade...
 99s Calculating upgrade...
 99s The following package was automatically installed and is no longer required:
 99s   libnl-genl-3-200
 99s Use 'sudo apt autoremove' to remove it.
 99s The following NEW packages will be installed:
 99s   bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10
 99s   linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic
 99s   linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic
 99s   linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids
 99s The following packages will be upgraded:
 99s   apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu
 99s   cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base
 99s   gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools
 99s   initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0
 99s   libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1
 99s   libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0
 99s   libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1
 99s   libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64
 99s   libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6
 99s   libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200
 99s   libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib
 99s   libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2
 99s   libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0
 99s   libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2
 99s   linux-firmware linux-generic linux-headers-generic linux-headers-virtual
 99s   linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common
 99s   linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term
 99s   parted pci.ids pciutils python-apt-common python3 python3-apt python3-bcrypt
 99s   python3-cffi-backend python3-dbus python3-gi python3-jinja2 python3-lazr.uri
 99s   python3-markupsafe python3-minimal python3-newt python3-rpds-py
 99s   python3-systemd python3-yaml python3.13 python3.13-gdbm python3.13-minimal
 99s   rsync rsyslog strace systemd systemd-cryptsetup systemd-resolved
 99s   systemd-sysv systemd-timesyncd ubuntu-kernel-accessories ubuntu-minimal
 99s   ubuntu-standard udev whiptail xz-utils
 99s 125 upgraded, 12 newly installed, 0 to remove and 0 not upgraded.
 99s Need to get 829 MB of archives.
 99s After this operation, 325 MB of additional disk space will be used.
 99s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB]
100s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB]
100s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB]
102s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB]
106s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB]
109s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB]
110s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB]
114s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB]
114s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB]
114s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB]
114s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB]
114s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB]
114s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB]
114s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB]
114s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB]
114s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB]
114s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB]
114s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB]
114s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB]
114s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB]
114s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB]
116s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB]
119s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB]
119s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB]
119s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB]
121s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB]
121s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B]
121s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB]
121s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB]
121s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB]
121s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB]
121s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB]
121s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB]
122s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB]
124s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB]
124s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB]
124s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB]
124s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB]
126s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB]
126s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB]
126s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB]
126s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB]
126s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB]
127s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB]
127s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB]
130s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB]
130s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB]
131s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB]
131s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB]
132s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB]
132s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B]
132s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB]
132s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB]
132s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB]
132s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB]
132s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB]
133s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB]
133s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B]
133s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB]
134s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB]
134s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB]
134s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB]
134s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB]
134s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB]
134s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB]
134s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB]
135s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB]
135s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB]
135s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB]
135s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB]
135s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB]
135s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB]
136s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB]
136s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB]
136s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB]
136s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB]
136s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB]
136s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB]
136s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB]
136s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB]
136s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB]
136s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB]
137s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB]
137s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB]
137s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB]
138s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB]
138s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB]
138s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB]
139s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB]
140s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB]
140s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB]
140s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB]
140s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B]
140s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB]
140s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB]
141s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB]
142s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB]
142s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
142s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB]
142s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB]
143s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB]
143s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB]
143s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB]
144s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB]
144s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB]
148s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB]
148s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB]
148s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB]
148s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB]
731s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B]
731s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB]
731s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB]
731s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB]
731s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB]
731s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB]
731s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB]
732s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB]
776s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB]
792s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB]
917s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B]
917s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB]
917s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B]
917s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB]
918s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B]
918s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB]
930s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB]
934s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB]
934s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB]
937s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB]
938s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B]
938s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB]
938s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB]
938s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB]
938s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB]
938s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB]
938s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B]
938s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB]
939s Preconfiguring packages ...
939s Fetched 829 MB in 13min 59s (988 kB/s)
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939s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu1_amd64.deb ...
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940s Checking for services that may need to be restarted...
940s Checking init scripts...
940s Checking for services that may need to be restarted...
940s Checking init scripts...
940s Stopping some services possibly affected by the upgrade (will be restarted later):
940s   cron: stopping...done.
940s 
940s Unpacking libc6:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ...
940s Setting up libc6:amd64 (2.41-1ubuntu1) ...
940s Checking for services that may need to be restarted...
940s Checking init scripts...
940s Restarting services possibly affected by the upgrade:
940s   cron: restarting...done.
940s 
940s Services restarted successfully.
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940s Preparing to unpack .../libc-bin_2.41-1ubuntu1_amd64.deb ...
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941s Preparing to unpack .../linux-libc-dev_6.14.0-10.10_amd64.deb ...
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941s Preparing to unpack .../gcc-15-base_15-20250222-0ubuntu1_amd64.deb ...
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941s Setting up gcc-15-base:amd64 (15-20250222-0ubuntu1) ...
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941s Setting up libgcc-s1:amd64 (15-20250222-0ubuntu1) ...
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941s Preparing to unpack .../libstdc++6_15-20250222-0ubuntu1_amd64.deb ...
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941s Setting up libstdc++6:amd64 (15-20250222-0ubuntu1) ...
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941s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ...
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941s Setting up ncurses-base (6.5+20250216-2) ...
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941s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ...
941s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ...
942s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ...
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942s Setting up liblz4-1:amd64 (1.10.0-4) ...
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942s Unpacking libsystemd0:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ...
942s Setting up libsystemd0:amd64 (257.3-1ubuntu3) ...
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942s Preparing to unpack .../libnss-systemd_257.3-1ubuntu3_amd64.deb ...
942s Unpacking libnss-systemd:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ...
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942s Preparing to unpack .../systemd-resolved_257.3-1ubuntu3_amd64.deb ...
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942s Setting up libsystemd-shared:amd64 (257.3-1ubuntu3) ...
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943s Setting up libaudit-common (1:4.0.2-2ubuntu2) ...
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943s Setting up libaudit1:amd64 (1:4.0.2-2ubuntu2) ...
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946s Preparing to unpack .../4-libpython3.13-stdlib_3.13.2-2_amd64.deb ...
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946s Preparing to unpack .../libassuan9_3.0.2-2_amd64.deb ...
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946s Preparing to unpack .../01-gir1.2-glib-2.0_2.84.0-1_amd64.deb ...
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946s Preparing to unpack .../03-libgirepository-1.0-1_1.83.4-1_amd64.deb ...
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947s Preparing to unpack .../06-python3-newt_0.52.24-4ubuntu2_amd64.deb ...
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947s Preparing to unpack .../07-libnewt0.52_0.52.24-4ubuntu2_amd64.deb ...
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947s Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) over (2.12.7+dfsg+really2.9.14-0.2ubuntu4) ...
947s Preparing to unpack .../09-python-apt-common_2.9.9build1_all.deb ...
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947s Preparing to unpack .../12-python3-dbus_1.3.2-5build5_amd64.deb ...
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947s Preparing to unpack .../13-python3-gi_3.50.0-4build1_amd64.deb ...
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947s Unpacking python3-yaml (6.0.2-1build2) over (6.0.2-1build1) ...
947s Preparing to unpack .../15-rsyslog_8.2412.0-2ubuntu2_amd64.deb ...
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947s Preparing to unpack .../16-whiptail_0.52.24-4ubuntu2_amd64.deb ...
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947s Preparing to unpack .../17-ubuntu-minimal_1.549_amd64.deb ...
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948s Preparing to unpack .../18-apparmor_4.1.0~beta5-0ubuntu8_amd64.deb ...
948s Unpacking apparmor (4.1.0~beta5-0ubuntu8) over (4.1.0~beta5-0ubuntu5) ...
949s Preparing to unpack .../19-dosfstools_4.2-1.2_amd64.deb ...
949s Unpacking dosfstools (4.2-1.2) over (4.2-1.1build1) ...
949s Preparing to unpack .../20-libnl-genl-3-200_3.7.0-1_amd64.deb ...
949s Unpacking libnl-genl-3-200:amd64 (3.7.0-1) over (3.7.0-0.3build2) ...
949s Preparing to unpack .../21-libnl-route-3-200_3.7.0-1_amd64.deb ...
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949s Unpacking libnl-3-200:amd64 (3.7.0-1) over (3.7.0-0.3build2) ...
949s Preparing to unpack .../23-parted_3.6-5_amd64.deb ...
949s Unpacking parted (3.6-5) over (3.6-4build1) ...
949s Preparing to unpack .../24-libparted2t64_3.6-5_amd64.deb ...
949s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64'
949s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64'
949s Unpacking libparted2t64:amd64 (3.6-5) over (3.6-4build1) ...
949s Preparing to unpack .../25-pci.ids_0.0~2025.03.09-1_all.deb ...
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949s Preparing to unpack .../33-libctf-nobfd0_2.44-3ubuntu1_amd64.deb ...
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949s Preparing to unpack .../34-binutils-x86-64-linux-gnu_2.44-3ubuntu1_amd64.deb ...
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949s Preparing to unpack .../35-libbinutils_2.44-3ubuntu1_amd64.deb ...
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950s Preparing to unpack .../36-binutils_2.44-3ubuntu1_amd64.deb ...
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950s Preparing to unpack .../37-binutils-common_2.44-3ubuntu1_amd64.deb ...
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950s Preparing to unpack .../38-libsframe1_2.44-3ubuntu1_amd64.deb ...
950s Unpacking libsframe1:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ...
950s Preparing to unpack .../39-hwdata_0.393-3_all.deb ...
950s Unpacking hwdata (0.393-3) over (0.392-1) ...
950s Selecting previously unselected package pnp.ids.
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950s Preparing to unpack .../41-linux-tools-common_6.14.0-10.10_all.deb ...
950s Unpacking linux-tools-common (6.14.0-10.10) over (6.12.0-16.16) ...
950s Selecting previously unselected package bpftool.
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950s Unpacking bpftool (7.6.0+6.14.0-10.10) ...
950s Preparing to unpack .../43-python3-markupsafe_2.1.5-1build4_amd64.deb ...
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950s Preparing to unpack .../44-python3-jinja2_3.1.5-2ubuntu1_all.deb ...
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950s Preparing to unpack .../45-cloud-init-base_25.1-0ubuntu3_all.deb ...
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950s Preparing to unpack .../46-libbrotli1_1.1.0-2build4_amd64.deb ...
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950s Preparing to unpack .../47-curl_8.12.1-3ubuntu1_amd64.deb ...
950s Unpacking curl (8.12.1-3ubuntu1) over (8.12.1-2ubuntu1) ...
950s Preparing to unpack .../48-libcurl4t64_8.12.1-3ubuntu1_amd64.deb ...
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950s Preparing to unpack .../49-exfatprogs_1.2.8-1_amd64.deb ...
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951s Preparing to unpack .../50-libcurl3t64-gnutls_8.12.1-3ubuntu1_amd64.deb ...
951s Unpacking libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) over (8.12.1-2ubuntu1) ...
951s Preparing to unpack .../51-fwupd_2.0.6-4_amd64.deb ...
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951s Preparing to unpack .../53-libmm-glib0_1.23.4-0ubuntu3_amd64.deb ...
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951s Preparing to unpack .../54-htop_3.4.0-2_amd64.deb ...
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951s Preparing to unpack .../55-linux-firmware_20250310.git9e1370d3-0ubuntu1_amd64.deb ...
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954s Preparing to unpack .../58-initramfs-tools-bin_0.146ubuntu1_amd64.deb ...
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954s Selecting previously unselected package libdebuginfod1t64:amd64.
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954s Unpacking libdebuginfod1t64:amd64 (0.192-4) ...
954s Preparing to unpack .../60-libftdi1-2_1.5-8build1_amd64.deb ...
954s Unpacking libftdi1-2:amd64 (1.5-8build1) over (1.5-8) ...
954s Preparing to unpack .../61-libgpgme11t64_1.24.2-1ubuntu2_amd64.deb ...
954s Unpacking libgpgme11t64:amd64 (1.24.2-1ubuntu2) over (1.24.2-1ubuntu1) ...
954s Preparing to unpack .../62-libjemalloc2_5.3.0-3_amd64.deb ...
954s Unpacking libjemalloc2:amd64 (5.3.0-3) over (5.3.0-2build1) ...
954s Selecting previously unselected package linux-modules-6.14.0-10-generic.
954s Preparing to unpack .../63-linux-modules-6.14.0-10-generic_6.14.0-10.10_amd64.deb ...
954s Unpacking linux-modules-6.14.0-10-generic (6.14.0-10.10) ...
954s Selecting previously unselected package linux-image-6.14.0-10-generic.
954s Preparing to unpack .../64-linux-image-6.14.0-10-generic_6.14.0-10.10_amd64.deb ...
954s Unpacking linux-image-6.14.0-10-generic (6.14.0-10.10) ...
955s Selecting previously unselected package linux-modules-extra-6.14.0-10-generic.
955s Preparing to unpack .../65-linux-modules-extra-6.14.0-10-generic_6.14.0-10.10_amd64.deb ...
955s Unpacking linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ...
956s Preparing to unpack .../66-linux-generic_6.14.0-10.10_amd64.deb ...
956s Unpacking linux-generic (6.14.0-10.10) over (6.12.0-16.16+2) ...
956s Preparing to unpack .../67-linux-image-generic_6.14.0-10.10_amd64.deb ...
956s Unpacking linux-image-generic (6.14.0-10.10) over (6.12.0-16.16+2) ...
956s Preparing to unpack .../68-linux-virtual_6.14.0-10.10_amd64.deb ...
956s Unpacking linux-virtual (6.14.0-10.10) over (6.12.0-16.16+2) ...
956s Preparing to unpack .../69-linux-image-virtual_6.14.0-10.10_amd64.deb ...
956s Unpacking linux-image-virtual (6.14.0-10.10) over (6.12.0-16.16+2) ...
956s Preparing to unpack .../70-linux-headers-virtual_6.14.0-10.10_amd64.deb ...
956s Unpacking linux-headers-virtual (6.14.0-10.10) over (6.12.0-16.16+2) ...
956s Selecting previously unselected package linux-headers-6.14.0-10.
956s Preparing to unpack .../71-linux-headers-6.14.0-10_6.14.0-10.10_all.deb ...
956s Unpacking linux-headers-6.14.0-10 (6.14.0-10.10) ...
958s Selecting previously unselected package linux-headers-6.14.0-10-generic.
958s Preparing to unpack .../72-linux-headers-6.14.0-10-generic_6.14.0-10.10_amd64.deb ...
958s Unpacking linux-headers-6.14.0-10-generic (6.14.0-10.10) ...
959s Preparing to unpack .../73-linux-headers-generic_6.14.0-10.10_amd64.deb ...
959s Unpacking linux-headers-generic (6.14.0-10.10) over (6.12.0-16.16+2) ...
959s Selecting previously unselected package linux-perf.
959s Preparing to unpack .../74-linux-perf_6.14.0-10.10_amd64.deb ...
959s Unpacking linux-perf (6.14.0-10.10) ...
960s Selecting previously unselected package linux-tools-6.14.0-10.
960s Preparing to unpack .../75-linux-tools-6.14.0-10_6.14.0-10.10_amd64.deb ...
960s Unpacking linux-tools-6.14.0-10 (6.14.0-10.10) ...
960s Selecting previously unselected package linux-tools-6.14.0-10-generic.
960s Preparing to unpack .../76-linux-tools-6.14.0-10-generic_6.14.0-10.10_amd64.deb ...
960s Unpacking linux-tools-6.14.0-10-generic (6.14.0-10.10) ...
960s Preparing to unpack .../77-python3-lazr.uri_1.0.6-6_all.deb ...
960s Unpacking python3-lazr.uri (1.0.6-6) over (1.0.6-5) ...
960s Preparing to unpack .../78-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ...
960s Unpacking python3-rpds-py (0.21.0-2ubuntu2) over (0.21.0-2ubuntu1) ...
960s Preparing to unpack .../79-python3-systemd_235-1build6_amd64.deb ...
960s Unpacking python3-systemd (235-1build6) over (235-1build5) ...
960s Preparing to unpack .../80-python3.13-gdbm_3.13.2-2_amd64.deb ...
960s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ...
960s Preparing to unpack .../81-ubuntu-kernel-accessories_1.549_amd64.deb ...
960s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ...
960s Preparing to unpack .../82-cloud-init_25.1-0ubuntu3_all.deb ...
960s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ...
960s Preparing to unpack .../83-python3-bcrypt_4.2.0-2.1build1_amd64.deb ...
960s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ...
960s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ...
960s Setting up media-types (13.0.0) ...
960s Installing new version of config file /etc/mime.types ...
960s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ...
960s Setting up ubuntu-kernel-accessories (1.549) ...
960s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ...
960s Setting up pci.ids (0.0~2025.03.09-1) ...
960s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ...
960s Setting up apt-utils (2.9.33) ...
960s Setting up libdebuginfod-common (0.192-4) ...
960s Setting up exfatprogs (1.2.8-1) ...
960s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ...
960s Setting up bpftool (7.6.0+6.14.0-10.10) ...
960s Setting up libestr0:amd64 (0.1.11-2) ...
960s Setting up libbrotli1:amd64 (1.1.0-2build4) ...
960s Setting up libsqlite3-0:amd64 (3.46.1-2) ...
960s Setting up dosfstools (4.2-1.2) ...
960s Setting up rsyslog (8.2412.0-2ubuntu2) ...
960s info: The user `syslog' is already a member of `adm'.
961s Setting up binutils-common:amd64 (2.44-3ubuntu1) ...
961s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ...
961s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ...
961s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ...
961s Setting up systemd (257.3-1ubuntu3) ...
961s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring.

961s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'.

962s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring.

962s Setting up libparted2t64:amd64 (3.6-5) ...
962s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64'
962s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64'
962s Setting up linux-headers-generic (6.14.0-10.10) ...
962s Setting up libjemalloc2:amd64 (5.3.0-3) ...
962s Setting up locales (2.41-1ubuntu1) ...
962s Installing new version of config file /etc/locale.alias ...
963s Generating locales (this might take a while)...
964s   en_US.UTF-8... done
964s Generation complete.
964s Setting up libsframe1:amd64 (2.44-3ubuntu1) ...
964s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ...
964s Setting up apparmor (4.1.0~beta5-0ubuntu8) ...
964s Installing new version of config file /etc/apparmor.d/fusermount3 ...
964s Installing new version of config file /etc/apparmor.d/lsusb ...
964s Installing new version of config file /etc/apparmor.d/openvpn ...
965s Reloading AppArmor profiles 
966s Setting up libftdi1-2:amd64 (1.5-8build1) ...
966s Setting up libglib2.0-data (2.84.0-1) ...
966s Setting up systemd-cryptsetup (257.3-1ubuntu3) ...
966s Setting up libncurses6:amd64 (6.5+20250216-2) ...
966s Setting up strace (6.13+ds-1ubuntu1) ...
967s Setting up xz-utils (5.6.4-1) ...
967s Setting up systemd-timesyncd (257.3-1ubuntu3) ...
967s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it.
967s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ...
967s Setting up udev (257.3-1ubuntu3) ...
968s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ...
970s Setting up libncursesw6:amd64 (6.5+20250216-2) ...
970s Setting up libpci3:amd64 (1:3.13.0-2) ...
970s Setting up whiptail (0.52.24-4ubuntu2) ...
970s Setting up python-apt-common (2.9.9build1) ...
970s Setting up pnp.ids (0.393-3) ...
970s Setting up libnl-3-200:amd64 (3.7.0-1) ...
970s Setting up python3.13-minimal (3.13.2-2) ...
971s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ...
971s Setting up libbinutils:amd64 (2.44-3ubuntu1) ...
971s Setting up libc-dev-bin (2.41-1ubuntu1) ...
971s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ...
971s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ...
971s Setting up rsync (3.4.1+ds1-3) ...
971s rsync.service is a disabled or a static unit not running, not starting it.
971s Setting up python3.13-gdbm (3.13.2-2) ...
971s Setting up libpython3-stdlib:amd64 (3.13.2-2) ...
971s Setting up systemd-resolved (257.3-1ubuntu3) ...
972s Setting up initramfs-tools-bin (0.146ubuntu1) ...
972s Setting up ncurses-term (6.5+20250216-2) ...
972s Setting up libctf0:amd64 (2.44-3ubuntu1) ...
972s Setting up libpython3.13:amd64 (3.13.2-2) ...
972s Setting up libdebuginfod1t64:amd64 (0.192-4) ...
972s Setting up systemd-sysv (257.3-1ubuntu3) ...
972s Setting up linux-headers-virtual (6.14.0-10.10) ...
972s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ...
972s Setting up python3.13 (3.13.2-2) ...
973s Setting up htop (3.4.0-2) ...
973s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ...
974s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic
974s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic
974s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic
974s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic
974s Setting up parted (3.6-5) ...
974s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ...
974s Setting up python3 (3.13.2-2) ...
975s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ...
975s Setting up python3-markupsafe (2.1.5-1build4) ...
975s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ...
977s Setting up libnl-route-3-200:amd64 (3.7.0-1) ...
977s Setting up hwdata (0.393-3) ...
977s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
977s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ...
977s No schema files found: doing nothing.
977s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ...
977s Setting up linux-perf (6.14.0-10.10) ...
977s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ...
977s Setting up pciutils (1:3.13.0-2) ...
977s Setting up python3-rpds-py (0.21.0-2ubuntu2) ...
977s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ...
977s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ...
977s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ...
977s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ...
977s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ...
977s Setting up curl (8.12.1-3ubuntu1) ...
977s Setting up linux-image-virtual (6.14.0-10.10) ...
977s Setting up initramfs-tools-core (0.146ubuntu1) ...
977s Setting up linux-tools-common (6.14.0-10.10) ...
977s Setting up python3-systemd (235-1build6) ...
977s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ...
977s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ...
977s Setting up linux-image-generic (6.14.0-10.10) ...
977s Setting up python3-dbus (1.3.2-5build5) ...
978s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ...
978s Setting up initramfs-tools (0.146ubuntu1) ...
978s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ...
978s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ...
978s update-initramfs: deferring update (trigger activated)
978s Setting up linux-generic (6.14.0-10.10) ...
978s Setting up ubuntu-minimal (1.549) ...
978s Setting up python3-apt (2.9.9build1) ...
978s Setting up python3-bcrypt (4.2.0-2.1build1) ...
978s Setting up python3-yaml (6.0.2-1build2) ...
978s Setting up libfwupd3:amd64 (2.0.6-4) ...
978s Setting up python3-lazr.uri (1.0.6-6) ...
978s Setting up binutils (2.44-3ubuntu1) ...
978s Setting up ubuntu-standard (1.549) ...
978s Setting up cloud-init-base (25.1-0ubuntu3) ...
979s Setting up linux-virtual (6.14.0-10.10) ...
979s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ...
979s Setting up python3-gi (3.50.0-4build1) ...
979s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ...
979s Setting up fwupd (2.0.6-4) ...
980s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
980s Setting up cloud-init (25.1-0ubuntu3) ...
980s Processing triggers for man-db (2.13.0-1) ...
980s Processing triggers for dbus (1.16.2-1ubuntu1) ...
980s Processing triggers for shared-mime-info (2.4-5) ...
980s Warning: program compiled against libxml 212 using older 209
981s Processing triggers for libc-bin (2.41-1ubuntu1) ...
981s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ...
981s /etc/kernel/postinst.d/initramfs-tools:
981s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic
981s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
990s /etc/kernel/postinst.d/zz-update-grub:
990s Sourcing file `/etc/default/grub'
990s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
990s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
990s Generating grub configuration file ...
990s Found linux image: /boot/vmlinuz-6.14.0-10-generic
990s Found initrd image: /boot/initrd.img-6.14.0-10-generic
990s Found linux image: /boot/vmlinuz-6.12.0-16-generic
990s Found initrd image: /boot/initrd.img-6.12.0-16-generic
990s Found linux image: /boot/vmlinuz-6.11.0-8-generic
990s Found initrd image: /boot/initrd.img-6.11.0-8-generic
990s Warning: os-prober will not be executed to detect other bootable partitions.
990s Systems on them will not be added to the GRUB boot configuration.
990s Check GRUB_DISABLE_OS_PROBER documentation entry.
990s Adding boot menu entry for UEFI Firmware Settings ...
990s done
990s Processing triggers for initramfs-tools (0.146ubuntu1) ...
990s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic
990s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
999s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref
999s + /usr/lib/apt/apt-helper analyze-pattern ?true
999s + uname -r
999s + sed s/\./\\./g
999s + running_kernel_pattern=^linux-.*6\.12\.0-16-generic.*
999s + apt list ?obsolete
999s + tail -n+2
999s + grep -v ^linux-.*6\.12\.0-16-generic.*
999s + cut -d/ -f1
1000s + obsolete_pkgs=linux-headers-6.11.0-8-generic
1000s linux-headers-6.11.0-8
1000s linux-headers-6.12.0-16
1000s linux-image-6.11.0-8-generic
1000s linux-modules-6.11.0-8-generic
1000s linux-tools-6.11.0-8-generic
1000s linux-tools-6.11.0-8
1000s linux-tools-6.12.0-16
1000s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremoveReading package lists...
1000s Building dependency tree... linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-headers-6.12.0-16 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 linux-tools-6.12.0-16
1000s 
1000s Reading state information...
1000s Solving dependencies...
1000s The following packages will be REMOVED:
1000s   libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib*
1000s   libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
1000s   linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic*
1000s   linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic*
1000s   linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16*
1000s   linux-tools-6.12.0-16-generic*
1001s 0 upgraded, 0 newly installed, 15 to remove and 5 not upgraded.
1001s After this operation, 371 MB disk space will be freed.
1001s (Reading database ... 
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(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 148643 files and directories currently installed.)
1001s Removing libnl-genl-3-200:amd64 (3.7.0-1) ...
1001s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
1001s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
1001s Removing libpython3.12t64:amd64 (3.12.9-1) ...
1001s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ...
1001s Removing libnsl2:amd64 (1.3.0-3build3) ...
1001s Removing libpython3.12-minimal:amd64 (3.12.9-1) ...
1001s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
1001s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
1003s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ...
1004s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ...
1005s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ...
1005s /etc/kernel/postrm.d/initramfs-tools:
1005s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic
1005s /etc/kernel/postrm.d/zz-update-grub:
1005s Sourcing file `/etc/default/grub'
1005s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
1005s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
1005s Generating grub configuration file ...
1006s Found linux image: /boot/vmlinuz-6.14.0-10-generic
1006s Found initrd image: /boot/initrd.img-6.14.0-10-generic
1006s Found linux image: /boot/vmlinuz-6.12.0-16-generic
1006s Found initrd image: /boot/initrd.img-6.12.0-16-generic
1006s Warning: os-prober will not be executed to detect other bootable partitions.
1006s Systems on them will not be added to the GRUB boot configuration.
1006s Check GRUB_DISABLE_OS_PROBER documentation entry.
1006s Adding boot menu entry for UEFI Firmware Settings ...
1006s done
1006s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
1006s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ...
1006s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ...
1006s Processing triggers for libc-bin (2.41-1ubuntu1) ...
1006s (Reading database ... 
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(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 84830 files and directories currently installed.)
1006s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ...
1006s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ...
1006s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
1006s + grep -q trusty /etc/lsb-release
1006s + [ ! -d /usr/share/doc/unattended-upgrades ]
1006s + [ ! -d /usr/share/doc/lxd ]
1006s + [ ! -d /usr/share/doc/lxd-client ]
1006s + [ ! -d /usr/share/doc/snapd ]
1006s + type iptables
1006s + cat
1006s + chmod 755 /etc/rc.local
1006s + . /etc/rc.local
1006s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu
1006s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP
1006s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP
1006s + uname -m
1006s + [ x86_64 = ppc64le ]
1006s + [ -d /run/systemd/system ]
1006s + systemd-detect-virt --quiet --vm
1006s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/
1006s + cat
1006s + grep -q lz4 /etc/initramfs-tools/initramfs.conf
1006s + echo COMPRESS=lz4
1006s autopkgtest [13:29:58]: upgrading testbed (apt dist-upgrade and autopurge)
1007s Reading package lists...
1007s Building dependency tree...
1007s Reading state information...
1007s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
1007s Starting 2 pkgProblemResolver with broken count: 0
1007s Done
1007s Entering ResolveByKeep
1008s 
1008s Calculating upgrade...
1008s The following packages will be upgraded:
1008s   libc-bin libc-dev-bin libc6 libc6-dev locales
1008s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1008s Need to get 10.5 MB of archives.
1008s After this operation, 1024 B of additional disk space will be used.
1008s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB]
1010s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB]
1010s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB]
1012s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB]
1013s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB]
1016s Preconfiguring packages ...
1016s Fetched 10.5 MB in 8s (1351 kB/s)
1016s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
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(Reading database ... 55%
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 84827 files and directories currently installed.)
1016s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ...
1016s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
1016s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ...
1016s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
1016s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ...
1017s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
1017s Setting up libc6:amd64 (2.41-1ubuntu2) ...
1017s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 84827 files and directories currently installed.)
1017s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ...
1017s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
1017s Setting up libc-bin (2.41-1ubuntu2) ...
1017s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
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(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 84827 files and directories currently installed.)
1017s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
1017s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
1017s Setting up locales (2.41-1ubuntu2) ...
1018s Generating locales (this might take a while)...
1019s   en_US.UTF-8... done
1019s Generation complete.
1019s Setting up libc-dev-bin (2.41-1ubuntu2) ...
1019s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ...
1019s Processing triggers for man-db (2.13.0-1) ...
1020s Processing triggers for systemd (257.3-1ubuntu3) ...
1021s Reading package lists...
1021s Building dependency tree...
1021s Reading state information...
1022s Starting pkgProblemResolver with broken count: 0
1022s Starting 2 pkgProblemResolver with broken count: 0
1022s Done
1022s Solving dependencies...
1022s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1022s autopkgtest [13:30:14]: rebooting testbed after setup commands that affected boot
1046s autopkgtest [13:30:38]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025
1049s autopkgtest [13:30:41]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-biocparallel
1052s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biocparallel 1.40.0-2 (dsc) [2224 B]
1052s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biocparallel 1.40.0-2 (tar) [1000 kB]
1052s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biocparallel 1.40.0-2 (diff) [5684 B]
1052s gpgv: Signature made Sat Jan 11 16:21:54 2025 UTC
1052s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
1052s gpgv:                issuer "crusoe@debian.org"
1052s gpgv: Can't check signature: No public key
1052s dpkg-source: warning: cannot verify inline signature for ./r-bioc-biocparallel_1.40.0-2.dsc: no acceptable signature found
1053s autopkgtest [13:30:45]: testing package r-bioc-biocparallel version 1.40.0-2
1053s autopkgtest [13:30:45]: build not needed
1060s autopkgtest [13:30:52]: test pkg-r-autopkgtest: preparing testbed
1060s Reading package lists...
1060s Building dependency tree...
1060s Reading state information...
1061s Starting pkgProblemResolver with broken count: 0
1061s Starting 2 pkgProblemResolver with broken count: 0
1061s Done
1061s The following NEW packages will be installed:
1061s   build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu
1061s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
1061s   fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
1061s   g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14
1061s   gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14
1061s   gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools
1061s   javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3
1061s   libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1
1061s   libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev
1061s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6
1061s   libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev
1061s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap
1061s   libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
1061s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
1061s   libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr
1061s   libjs-popper.js libjs-prettify libjs-sifter.js
1061s   libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3
1061s   liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3
1061s   libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
1061s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
1061s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1
1061s   libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev
1061s   libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0
1061s   libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7
1061s   libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1
1061s   libxss1 libxt6t64 libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv
1061s   node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin
1061s   r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase
1061s   r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle
1061s   r-bioc-biocversion r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray
1061s   r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments
1061s   r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest
1061s   r-bioc-matrixgenerics r-bioc-pwalign r-bioc-rhtslib r-bioc-rsamtools
1061s   r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread
1061s   r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-ucsc.utils
1061s   r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind
1061s   r-cran-askpass r-cran-backports r-cran-base64enc r-cran-base64url
1061s   r-cran-batchtools r-cran-bbmisc r-cran-bh r-cran-biocmanager r-cran-bit
1061s   r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brew
1061s   r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-cli r-cran-codetools
1061s   r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table
1061s   r-cran-dbi r-cran-deldir r-cran-digest r-cran-doparallel r-cran-evaluate
1061s   r-cran-fastmap r-cran-fontawesome r-cran-foreach r-cran-formatr r-cran-fs
1061s   r-cran-futile.logger r-cran-futile.options r-cran-glue r-cran-highr
1061s   r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-hwriter
1061s   r-cran-interp r-cran-iterators r-cran-jpeg r-cran-jquerylib r-cran-jsonlite
1061s   r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra
1061s   r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix
1061s   r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl
1061s   r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits
1061s   r-cran-progress r-cran-promises r-cran-r6 r-cran-rappdirs
1061s   r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl
1061s   r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite
1061s   r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools
1061s   r-cran-stringi r-cran-sys r-cran-tinytex r-cran-vctrs r-cran-withr
1061s   r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml t1utils tex-common
1061s   texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip
1061s   x11-common xdg-utils zip zlib1g-dev
1062s 0 upgraded, 278 newly installed, 0 to remove and 0 not upgraded.
1062s Need to get 449 MB of archives.
1062s After this operation, 1381 MB of additional disk space will be used.
1062s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB]
1062s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB]
1062s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB]
1074s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B]
1074s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B]
1074s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB]
1075s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB]
1075s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB]
1075s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB]
1075s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB]
1078s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB]
1079s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB]
1082s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB]
1083s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB]
1085s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB]
1085s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB]
1087s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB]
1112s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB]
1112s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B]
1112s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B]
1112s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB]
1115s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB]
1129s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB]
1129s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B]
1129s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B]
1129s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
1129s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB]
1130s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
1130s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
1131s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB]
1131s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB]
1131s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB]
1132s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
1132s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
1132s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB]
1137s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
1139s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB]
1140s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB]
1141s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB]
1153s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB]
1153s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B]
1153s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B]
1153s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB]
1153s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B]
1153s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB]
1153s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB]
1153s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB]
1154s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB]
1154s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB]
1154s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB]
1165s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B]
1165s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB]
1165s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
1165s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
1165s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
1165s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
1165s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB]
1165s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB]
1165s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB]
1166s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB]
1166s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
1166s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB]
1166s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
1166s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB]
1166s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB]
1177s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB]
1177s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB]
1177s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
1177s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
1177s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
1177s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
1177s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
1177s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
1178s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB]
1178s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
1178s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
1178s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
1178s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
1178s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
1178s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
1178s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
1179s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
1179s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
1179s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
1179s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
1179s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-5build2 [67.0 kB]
1179s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB]
1181s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB]
1187s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB]
1187s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB]
1187s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB]
1187s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB]
1188s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB]
1188s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB]
1188s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB]
1188s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB]
1188s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB]
1188s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB]
1188s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB]
1188s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB]
1188s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB]
1189s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B]
1189s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB]
1190s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB]
1190s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB]
1190s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB]
1191s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB]
1191s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-5build2 [43.7 kB]
1191s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB]
1191s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB]
1191s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB]
1191s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-5build2 [62.5 kB]
1191s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB]
1192s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB]
1192s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-5build2 [145 kB]
1192s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
1192s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB]
1193s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB]
1193s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
1193s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
1193s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB]
1194s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB]
1194s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB]
1194s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB]
1194s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB]
1194s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB]
1194s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB]
1194s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB]
1195s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB]
1195s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
1195s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB]
1214s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB]
1214s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B]
1214s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB]
1215s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
1215s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB]
1215s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB]
1215s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB]
1224s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB]
1224s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB]
1224s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB]
1224s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB]
1224s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B]
1224s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
1224s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
1225s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB]
1227s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB]
1228s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB]
1230s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB]
1231s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB]
1232s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB]
1232s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB]
1233s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB]
1235s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
1235s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
1235s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
1236s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB]
1236s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB]
1236s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB]
1236s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB]
1236s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
1236s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB]
1236s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB]
1236s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB]
1238s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB]
1238s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB]
1238s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB]
1238s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB]
1238s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB]
1238s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB]
1239s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB]
1239s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
1239s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB]
1239s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
1239s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB]
1240s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB]
1240s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
1251s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB]
1254s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB]
1254s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB]
1266s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB]
1266s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB]
1271s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB]
1271s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB]
1271s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB]
1271s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
1271s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
1272s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB]
1272s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB]
1272s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B]
1272s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB]
1273s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB]
1273s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB]
1273s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB]
1273s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB]
1274s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB]
1274s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
1274s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB]
1274s Get:199 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
1279s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB]
1279s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
1279s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB]
1280s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB]
1280s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB]
1281s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB]
1285s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB]
1286s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB]
1286s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB]
1286s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
1286s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB]
1287s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB]
1288s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
1288s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB]
1288s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB]
1288s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB]
1289s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB]
1289s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
1289s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB]
1289s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
1289s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
1292s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB]
1293s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB]
1294s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
1295s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB]
1295s Get:225 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB]
1295s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-5build2 [9799 kB]
1303s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB]
1324s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB]
1325s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB]
1400s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB]
1400s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB]
1401s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB]
1403s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB]
1404s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB]
1404s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB]
1406s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB]
1409s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB]
1409s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB]
1410s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB]
1411s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB]
1415s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB]
1415s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB]
1416s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1392 kB]
1417s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB]
1419s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB]
1421s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB]
1423s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB]
1423s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB]
1423s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB]
1424s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB]
1428s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-bsgenome all 1.74.0-2 [7001 kB]
1433s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB]
1434s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-pwalign amd64 1.2.0-2 [757 kB]
1435s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hwriter all 1.3.2.1-1 [106 kB]
1435s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB]
1435s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
1435s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB]
1435s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB]
1436s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB]
1437s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB]
1437s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-latticeextra all 0.6-30-1 [2198 kB]
1439s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-shortread amd64 1.64.0-3 [5247 kB]
1443s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-variantannotation amd64 1.52.0-2 [3642 kB]
1446s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-backports amd64 1.5.0-2 [121 kB]
1446s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64url amd64 1.4-2build1 [26.5 kB]
1446s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brew all 1.0-10-1 [77.7 kB]
1446s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-checkmate amd64 2.3.2-1 [706 kB]
1447s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-data.table amd64 1.17.0+dfsg-1 [2168 kB]
1449s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB]
1449s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB]
1449s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB]
1449s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB]
1450s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-batchtools amd64 0.9.17+dfsg-1 [712 kB]
1451s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bbmisc amd64 1.13-1 [316 kB]
1451s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-iterators all 1.0.14-1 [336 kB]
1451s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-foreach all 1.5.2-1 [124 kB]
1451s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-doparallel all 1.0.17-1 [189 kB]
1452s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-runit all 0.4.33-1 [377 kB]
1452s Preconfiguring packages ...
1452s Fetched 449 MB in 6min 31s (1149 kB/s)
1452s Selecting previously unselected package libisl23:amd64.
1453s (Reading database ... 
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(Reading database ... 84827 files and directories currently installed.)
1453s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ...
1453s Unpacking libisl23:amd64 (0.27-1) ...
1453s Selecting previously unselected package libmpc3:amd64.
1453s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ...
1453s Unpacking libmpc3:amd64 (1.3.1-1build2) ...
1453s Selecting previously unselected package cpp-14-x86-64-linux-gnu.
1453s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ...
1453s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
1453s Selecting previously unselected package cpp-14.
1453s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ...
1453s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
1453s Selecting previously unselected package cpp-x86-64-linux-gnu.
1453s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
1453s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
1453s Selecting previously unselected package cpp.
1453s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ...
1453s Unpacking cpp (4:14.2.0-1ubuntu1) ...
1453s Selecting previously unselected package libcc1-0:amd64.
1453s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ...
1453s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ...
1453s Selecting previously unselected package libgomp1:amd64.
1453s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ...
1453s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ...
1453s Selecting previously unselected package libitm1:amd64.
1453s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ...
1453s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ...
1453s Selecting previously unselected package libasan8:amd64.
1453s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ...
1453s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ...
1453s Selecting previously unselected package liblsan0:amd64.
1453s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ...
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1453s Selecting previously unselected package libtsan2:amd64.
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1453s Selecting previously unselected package libubsan1:amd64.
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1453s Selecting previously unselected package libhwasan0:amd64.
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1453s Selecting previously unselected package libquadmath0:amd64.
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1453s Selecting previously unselected package libgcc-14-dev:amd64.
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1453s Selecting previously unselected package gcc-14-x86-64-linux-gnu.
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1454s Selecting previously unselected package gcc-14.
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1454s Selecting previously unselected package gcc-x86-64-linux-gnu.
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1454s Selecting previously unselected package gcc.
1454s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ...
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1454s Selecting previously unselected package libstdc++-14-dev:amd64.
1454s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ...
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1454s Selecting previously unselected package g++-14-x86-64-linux-gnu.
1454s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ...
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1454s Selecting previously unselected package g++-14.
1454s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ...
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1454s Selecting previously unselected package g++-x86-64-linux-gnu.
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1454s Selecting previously unselected package g++.
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1454s Selecting previously unselected package build-essential.
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1454s Selecting previously unselected package dctrl-tools.
1454s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ...
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1454s Selecting previously unselected package fonts-dejavu-mono.
1454s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ...
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1454s Selecting previously unselected package fonts-dejavu-core.
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1454s Selecting previously unselected package fontconfig-config.
1454s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ...
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1455s Selecting previously unselected package libfontconfig1:amd64.
1455s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ...
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1455s Selecting previously unselected package fontconfig.
1455s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ...
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1455s Selecting previously unselected package fonts-font-awesome.
1455s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
1455s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
1455s Selecting previously unselected package fonts-glyphicons-halflings.
1455s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
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1455s Selecting previously unselected package fonts-lmodern.
1455s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ...
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1455s Selecting previously unselected package fonts-mathjax.
1455s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
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1455s Selecting previously unselected package libgfortran5:amd64.
1455s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ...
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1455s Selecting previously unselected package libgfortran-14-dev:amd64.
1455s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ...
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1455s Selecting previously unselected package gfortran-14-x86-64-linux-gnu.
1455s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ...
1455s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
1455s Selecting previously unselected package gfortran-14.
1455s Preparing to unpack .../039-gfortran-14_14.2.0-17ubuntu3_amd64.deb ...
1455s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
1455s Selecting previously unselected package gfortran-x86-64-linux-gnu.
1455s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
1455s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
1455s Selecting previously unselected package gfortran.
1455s Preparing to unpack .../041-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ...
1455s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
1455s Selecting previously unselected package icu-devtools.
1455s Preparing to unpack .../042-icu-devtools_76.1-1ubuntu2_amd64.deb ...
1455s Unpacking icu-devtools (76.1-1ubuntu2) ...
1455s Selecting previously unselected package javascript-common.
1455s Preparing to unpack .../043-javascript-common_12_all.deb ...
1455s Unpacking javascript-common (12) ...
1455s Selecting previously unselected package libio-string-perl.
1455s Preparing to unpack .../044-libio-string-perl_1.08-4_all.deb ...
1455s Unpacking libio-string-perl (1.08-4) ...
1455s Selecting previously unselected package liblatex-tounicode-perl.
1455s Preparing to unpack .../045-liblatex-tounicode-perl_0.55-1_all.deb ...
1455s Unpacking liblatex-tounicode-perl (0.55-1) ...
1455s Selecting previously unselected package libbibtex-parser-perl.
1455s Preparing to unpack .../046-libbibtex-parser-perl_1.05+dfsg-1_all.deb ...
1455s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ...
1455s Selecting previously unselected package libblas3:amd64.
1455s Preparing to unpack .../047-libblas3_3.12.1-2_amd64.deb ...
1455s Unpacking libblas3:amd64 (3.12.1-2) ...
1455s Selecting previously unselected package libblas-dev:amd64.
1456s Preparing to unpack .../048-libblas-dev_3.12.1-2_amd64.deb ...
1456s Unpacking libblas-dev:amd64 (3.12.1-2) ...
1456s Selecting previously unselected package libboost1.83-dev:amd64.
1456s Preparing to unpack .../049-libboost1.83-dev_1.83.0-4.1ubuntu2_amd64.deb ...
1456s Unpacking libboost1.83-dev:amd64 (1.83.0-4.1ubuntu2) ...
1457s Selecting previously unselected package libboost-dev:amd64.
1457s Preparing to unpack .../050-libboost-dev_1.83.0.2ubuntu1_amd64.deb ...
1457s Unpacking libboost-dev:amd64 (1.83.0.2ubuntu1) ...
1458s Selecting previously unselected package libbz2-dev:amd64.
1458s Preparing to unpack .../051-libbz2-dev_1.0.8-6_amd64.deb ...
1458s Unpacking libbz2-dev:amd64 (1.0.8-6) ...
1458s Selecting previously unselected package libpixman-1-0:amd64.
1458s Preparing to unpack .../052-libpixman-1-0_0.44.0-3_amd64.deb ...
1458s Unpacking libpixman-1-0:amd64 (0.44.0-3) ...
1458s Selecting previously unselected package libxcb-render0:amd64.
1458s Preparing to unpack .../053-libxcb-render0_1.17.0-2_amd64.deb ...
1458s Unpacking libxcb-render0:amd64 (1.17.0-2) ...
1458s Selecting previously unselected package libxcb-shm0:amd64.
1458s Preparing to unpack .../054-libxcb-shm0_1.17.0-2_amd64.deb ...
1458s Unpacking libxcb-shm0:amd64 (1.17.0-2) ...
1458s Selecting previously unselected package libxrender1:amd64.
1458s Preparing to unpack .../055-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ...
1458s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ...
1458s Selecting previously unselected package libcairo2:amd64.
1458s Preparing to unpack .../056-libcairo2_1.18.2-2_amd64.deb ...
1458s Unpacking libcairo2:amd64 (1.18.2-2) ...
1458s Selecting previously unselected package libdatrie1:amd64.
1458s Preparing to unpack .../057-libdatrie1_0.2.13-3build1_amd64.deb ...
1458s Unpacking libdatrie1:amd64 (0.2.13-3build1) ...
1458s Selecting previously unselected package libdeflate0:amd64.
1458s Preparing to unpack .../058-libdeflate0_1.23-1_amd64.deb ...
1458s Unpacking libdeflate0:amd64 (1.23-1) ...
1458s Selecting previously unselected package libdeflate-dev:amd64.
1458s Preparing to unpack .../059-libdeflate-dev_1.23-1_amd64.deb ...
1458s Unpacking libdeflate-dev:amd64 (1.23-1) ...
1458s Selecting previously unselected package libgraphite2-3:amd64.
1458s Preparing to unpack .../060-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ...
1458s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
1458s Selecting previously unselected package libharfbuzz0b:amd64.
1458s Preparing to unpack .../061-libharfbuzz0b_10.2.0-1_amd64.deb ...
1458s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ...
1458s Selecting previously unselected package x11-common.
1458s Preparing to unpack .../062-x11-common_1%3a7.7+23ubuntu3_all.deb ...
1458s Unpacking x11-common (1:7.7+23ubuntu3) ...
1458s Selecting previously unselected package libice6:amd64.
1458s Preparing to unpack .../063-libice6_2%3a1.1.1-1_amd64.deb ...
1458s Unpacking libice6:amd64 (2:1.1.1-1) ...
1458s Selecting previously unselected package libicu-dev:amd64.
1458s Preparing to unpack .../064-libicu-dev_76.1-1ubuntu2_amd64.deb ...
1458s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ...
1458s Selecting previously unselected package libjpeg-turbo8:amd64.
1458s Preparing to unpack .../065-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ...
1458s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
1458s Selecting previously unselected package libjpeg-turbo8-dev:amd64.
1458s Preparing to unpack .../066-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ...
1458s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ...
1458s Selecting previously unselected package libjpeg8:amd64.
1458s Preparing to unpack .../067-libjpeg8_8c-2ubuntu11_amd64.deb ...
1458s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
1458s Selecting previously unselected package libjpeg8-dev:amd64.
1458s Preparing to unpack .../068-libjpeg8-dev_8c-2ubuntu11_amd64.deb ...
1458s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ...
1458s Selecting previously unselected package libjpeg-dev:amd64.
1458s Preparing to unpack .../069-libjpeg-dev_8c-2ubuntu11_amd64.deb ...
1458s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ...
1458s Selecting previously unselected package libjs-bootstrap.
1458s Preparing to unpack .../070-libjs-bootstrap_3.4.1+dfsg-3_all.deb ...
1458s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ...
1458s Selecting previously unselected package libjs-popper.js.
1458s Preparing to unpack .../071-libjs-popper.js_1.16.1+ds-6_all.deb ...
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1458s Selecting previously unselected package libjs-bootstrap4.
1458s Preparing to unpack .../072-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ...
1458s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ...
1458s Selecting previously unselected package libjs-d3.
1458s Preparing to unpack .../073-libjs-d3_3.5.17-4_all.deb ...
1458s Unpacking libjs-d3 (3.5.17-4) ...
1458s Selecting previously unselected package libjs-es5-shim.
1458s Preparing to unpack .../074-libjs-es5-shim_4.6.7-2_all.deb ...
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1459s Selecting previously unselected package libjs-highlight.js.
1459s Preparing to unpack .../075-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ...
1459s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ...
1459s Selecting previously unselected package libjs-jquery.
1459s Preparing to unpack .../076-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
1459s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
1459s Selecting previously unselected package libjs-jquery-datatables.
1459s Preparing to unpack .../077-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ...
1459s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ...
1459s Selecting previously unselected package libjs-sifter.js.
1459s Preparing to unpack .../078-libjs-sifter.js_0.6.0+dfsg-3_all.deb ...
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1459s Selecting previously unselected package libjs-microplugin.js.
1459s Preparing to unpack .../079-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ...
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1459s Selecting previously unselected package libjs-jquery-selectize.js.
1459s Preparing to unpack .../080-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ...
1459s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
1459s Selecting previously unselected package libjs-jquery-ui.
1459s Preparing to unpack .../081-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
1459s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
1459s Selecting previously unselected package libjs-json.
1459s Preparing to unpack .../082-libjs-json_0~20221030+~1.0.8-1_all.deb ...
1459s Unpacking libjs-json (0~20221030+~1.0.8-1) ...
1459s Selecting previously unselected package libjs-lunr.
1459s Preparing to unpack .../083-libjs-lunr_2.3.9~dfsg-2_all.deb ...
1459s Unpacking libjs-lunr (2.3.9~dfsg-2) ...
1459s Selecting previously unselected package libjs-prettify.
1459s Preparing to unpack .../084-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ...
1459s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ...
1459s Selecting previously unselected package libkpathsea6:amd64.
1459s Preparing to unpack .../085-libkpathsea6_2024.20240313.70630+ds-5build2_amd64.deb ...
1459s Unpacking libkpathsea6:amd64 (2024.20240313.70630+ds-5build2) ...
1459s Selecting previously unselected package liblapack3:amd64.
1459s Preparing to unpack .../086-liblapack3_3.12.1-2_amd64.deb ...
1459s Unpacking liblapack3:amd64 (3.12.1-2) ...
1459s Selecting previously unselected package liblapack-dev:amd64.
1459s Preparing to unpack .../087-liblapack-dev_3.12.1-2_amd64.deb ...
1459s Unpacking liblapack-dev:amd64 (3.12.1-2) ...
1459s Selecting previously unselected package liblerc4:amd64.
1459s Preparing to unpack .../088-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ...
1459s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ...
1459s Selecting previously unselected package liblua5.4-0:amd64.
1459s Preparing to unpack .../089-liblua5.4-0_5.4.7-1_amd64.deb ...
1459s Unpacking liblua5.4-0:amd64 (5.4.7-1) ...
1459s Selecting previously unselected package libmpfi0:amd64.
1459s Preparing to unpack .../090-libmpfi0_1.5.4+ds-4_amd64.deb ...
1459s Unpacking libmpfi0:amd64 (1.5.4+ds-4) ...
1459s Selecting previously unselected package libncurses-dev:amd64.
1459s Preparing to unpack .../091-libncurses-dev_6.5+20250216-2_amd64.deb ...
1459s Unpacking libncurses-dev:amd64 (6.5+20250216-2) ...
1459s Selecting previously unselected package libthai-data.
1459s Preparing to unpack .../092-libthai-data_0.1.29-2build1_all.deb ...
1459s Unpacking libthai-data (0.1.29-2build1) ...
1459s Selecting previously unselected package libthai0:amd64.
1459s Preparing to unpack .../093-libthai0_0.1.29-2build1_amd64.deb ...
1459s Unpacking libthai0:amd64 (0.1.29-2build1) ...
1459s Selecting previously unselected package libpango-1.0-0:amd64.
1460s Preparing to unpack .../094-libpango-1.0-0_1.56.2-1_amd64.deb ...
1460s Unpacking libpango-1.0-0:amd64 (1.56.2-1) ...
1460s Selecting previously unselected package libpangoft2-1.0-0:amd64.
1460s Preparing to unpack .../095-libpangoft2-1.0-0_1.56.2-1_amd64.deb ...
1460s Unpacking libpangoft2-1.0-0:amd64 (1.56.2-1) ...
1460s Selecting previously unselected package libpangocairo-1.0-0:amd64.
1460s Preparing to unpack .../096-libpangocairo-1.0-0_1.56.2-1_amd64.deb ...
1460s Unpacking libpangocairo-1.0-0:amd64 (1.56.2-1) ...
1460s Selecting previously unselected package libpaper2:amd64.
1460s Preparing to unpack .../097-libpaper2_2.2.5-0.3_amd64.deb ...
1460s Unpacking libpaper2:amd64 (2.2.5-0.3) ...
1460s Selecting previously unselected package libpaper-utils.
1460s Preparing to unpack .../098-libpaper-utils_2.2.5-0.3_amd64.deb ...
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1460s Selecting previously unselected package libpcre2-16-0:amd64.
1460s Preparing to unpack .../099-libpcre2-16-0_10.45-1_amd64.deb ...
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1460s Selecting previously unselected package libpcre2-32-0:amd64.
1460s Preparing to unpack .../100-libpcre2-32-0_10.45-1_amd64.deb ...
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1460s Selecting previously unselected package libpcre2-posix3:amd64.
1460s Preparing to unpack .../101-libpcre2-posix3_10.45-1_amd64.deb ...
1460s Unpacking libpcre2-posix3:amd64 (10.45-1) ...
1460s Selecting previously unselected package libpcre2-dev:amd64.
1460s Preparing to unpack .../102-libpcre2-dev_10.45-1_amd64.deb ...
1460s Unpacking libpcre2-dev:amd64 (10.45-1) ...
1460s Selecting previously unselected package libpkgconf3:amd64.
1460s Preparing to unpack .../103-libpkgconf3_1.8.1-4_amd64.deb ...
1460s Unpacking libpkgconf3:amd64 (1.8.1-4) ...
1460s Selecting previously unselected package zlib1g-dev:amd64.
1460s Preparing to unpack .../104-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ...
1460s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
1460s Selecting previously unselected package libpng-dev:amd64.
1460s Preparing to unpack .../105-libpng-dev_1.6.47-1_amd64.deb ...
1460s Unpacking libpng-dev:amd64 (1.6.47-1) ...
1460s Selecting previously unselected package libpotrace0:amd64.
1460s Preparing to unpack .../106-libpotrace0_1.16-2build1_amd64.deb ...
1460s Unpacking libpotrace0:amd64 (1.16-2build1) ...
1460s Selecting previously unselected package libptexenc1:amd64.
1460s Preparing to unpack .../107-libptexenc1_2024.20240313.70630+ds-5build2_amd64.deb ...
1460s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-5build2) ...
1460s Selecting previously unselected package libreadline-dev:amd64.
1460s Preparing to unpack .../108-libreadline-dev_8.2-6_amd64.deb ...
1460s Unpacking libreadline-dev:amd64 (8.2-6) ...
1460s Selecting previously unselected package libsharpyuv0:amd64.
1460s Preparing to unpack .../109-libsharpyuv0_1.5.0-0.1_amd64.deb ...
1460s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ...
1460s Selecting previously unselected package libsm6:amd64.
1460s Preparing to unpack .../110-libsm6_2%3a1.2.4-1_amd64.deb ...
1460s Unpacking libsm6:amd64 (2:1.2.4-1) ...
1460s Selecting previously unselected package libsynctex2:amd64.
1460s Preparing to unpack .../111-libsynctex2_2024.20240313.70630+ds-5build2_amd64.deb ...
1460s Unpacking libsynctex2:amd64 (2024.20240313.70630+ds-5build2) ...
1460s Selecting previously unselected package libtcl8.6:amd64.
1460s Preparing to unpack .../112-libtcl8.6_8.6.16+dfsg-1_amd64.deb ...
1460s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ...
1460s Selecting previously unselected package libteckit0:amd64.
1460s Preparing to unpack .../113-libteckit0_2.5.12+ds1-1_amd64.deb ...
1460s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ...
1460s Selecting previously unselected package libtexlua53-5:amd64.
1460s Preparing to unpack .../114-libtexlua53-5_2024.20240313.70630+ds-5build2_amd64.deb ...
1460s Unpacking libtexlua53-5:amd64 (2024.20240313.70630+ds-5build2) ...
1460s Selecting previously unselected package libjbig0:amd64.
1460s Preparing to unpack .../115-libjbig0_2.1-6.1ubuntu2_amd64.deb ...
1460s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ...
1460s Selecting previously unselected package libwebp7:amd64.
1460s Preparing to unpack .../116-libwebp7_1.5.0-0.1_amd64.deb ...
1460s Unpacking libwebp7:amd64 (1.5.0-0.1) ...
1460s Selecting previously unselected package libtiff6:amd64.
1460s Preparing to unpack .../117-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ...
1460s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ...
1460s Selecting previously unselected package libxft2:amd64.
1460s Preparing to unpack .../118-libxft2_2.3.6-1build1_amd64.deb ...
1460s Unpacking libxft2:amd64 (2.3.6-1build1) ...
1460s Selecting previously unselected package libxss1:amd64.
1460s Preparing to unpack .../119-libxss1_1%3a1.2.3-1build3_amd64.deb ...
1460s Unpacking libxss1:amd64 (1:1.2.3-1build3) ...
1460s Selecting previously unselected package libtk8.6:amd64.
1460s Preparing to unpack .../120-libtk8.6_8.6.16-1_amd64.deb ...
1460s Unpacking libtk8.6:amd64 (8.6.16-1) ...
1460s Selecting previously unselected package libxt6t64:amd64.
1460s Preparing to unpack .../121-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ...
1460s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ...
1460s Selecting previously unselected package libxmu6:amd64.
1460s Preparing to unpack .../122-libxmu6_2%3a1.1.3-3build2_amd64.deb ...
1460s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ...
1460s Selecting previously unselected package libxpm4:amd64.
1460s Preparing to unpack .../123-libxpm4_1%3a3.5.17-1build2_amd64.deb ...
1460s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ...
1460s Selecting previously unselected package libxaw7:amd64.
1461s Preparing to unpack .../124-libxaw7_2%3a1.0.16-1_amd64.deb ...
1461s Unpacking libxaw7:amd64 (2:1.0.16-1) ...
1461s Selecting previously unselected package libxi6:amd64.
1461s Preparing to unpack .../125-libxi6_2%3a1.8.2-1_amd64.deb ...
1461s Unpacking libxi6:amd64 (2:1.8.2-1) ...
1461s Selecting previously unselected package libzzip-0-13t64:amd64.
1461s Preparing to unpack .../126-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ...
1461s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ...
1461s Selecting previously unselected package zip.
1461s Preparing to unpack .../127-zip_3.0-14ubuntu2_amd64.deb ...
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1461s Preparing to unpack .../128-unzip_6.0-28ubuntu6_amd64.deb ...
1461s Unpacking unzip (6.0-28ubuntu6) ...
1461s Selecting previously unselected package xdg-utils.
1461s Preparing to unpack .../129-xdg-utils_1.2.1-2ubuntu1_all.deb ...
1461s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
1461s Selecting previously unselected package r-base-core.
1461s Preparing to unpack .../130-r-base-core_4.4.3-1_amd64.deb ...
1461s Unpacking r-base-core (4.4.3-1) ...
1461s Selecting previously unselected package r-cran-littler.
1461s Preparing to unpack .../131-r-cran-littler_0.3.20-2_amd64.deb ...
1461s Unpacking r-cran-littler (0.3.20-2) ...
1461s Selecting previously unselected package littler.
1461s Preparing to unpack .../132-littler_0.3.20-2_all.deb ...
1461s Unpacking littler (0.3.20-2) ...
1461s Selecting previously unselected package node-bootstrap-sass.
1461s Preparing to unpack .../133-node-bootstrap-sass_3.4.3-2_all.deb ...
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1461s Selecting previously unselected package node-html5shiv.
1461s Preparing to unpack .../134-node-html5shiv_3.7.3+dfsg-5_all.deb ...
1461s Unpacking node-html5shiv (3.7.3+dfsg-5) ...
1461s Selecting previously unselected package node-normalize.css.
1461s Preparing to unpack .../135-node-normalize.css_8.0.1-5_all.deb ...
1461s Unpacking node-normalize.css (8.0.1-5) ...
1461s Selecting previously unselected package pandoc-data.
1461s Preparing to unpack .../136-pandoc-data_3.1.11.1-3build1_all.deb ...
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1461s Selecting previously unselected package pandoc.
1461s Preparing to unpack .../137-pandoc_3.1.11.1+ds-2_amd64.deb ...
1461s Unpacking pandoc (3.1.11.1+ds-2) ...
1462s Selecting previously unselected package liblzma-dev:amd64.
1462s Preparing to unpack .../138-liblzma-dev_5.6.4-1_amd64.deb ...
1462s Unpacking liblzma-dev:amd64 (5.6.4-1) ...
1462s Selecting previously unselected package pkgconf-bin.
1462s Preparing to unpack .../139-pkgconf-bin_1.8.1-4_amd64.deb ...
1462s Unpacking pkgconf-bin (1.8.1-4) ...
1462s Selecting previously unselected package pkgconf:amd64.
1462s Preparing to unpack .../140-pkgconf_1.8.1-4_amd64.deb ...
1462s Unpacking pkgconf:amd64 (1.8.1-4) ...
1462s Selecting previously unselected package libtirpc-dev:amd64.
1462s Preparing to unpack .../141-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ...
1462s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ...
1462s Selecting previously unselected package r-base-dev.
1462s Preparing to unpack .../142-r-base-dev_4.4.3-1_all.deb ...
1462s Unpacking r-base-dev (4.4.3-1) ...
1462s Selecting previously unselected package pkg-r-autopkgtest.
1462s Preparing to unpack .../143-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
1462s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
1462s Selecting previously unselected package r-bioc-biocgenerics.
1462s Preparing to unpack .../144-r-bioc-biocgenerics_0.52.0-2_all.deb ...
1462s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
1462s Selecting previously unselected package r-bioc-biobase.
1462s Preparing to unpack .../145-r-bioc-biobase_2.66.0-2_amd64.deb ...
1462s Unpacking r-bioc-biobase (2.66.0-2) ...
1462s Selecting previously unselected package r-bioc-s4vectors.
1462s Preparing to unpack .../146-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ...
1462s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ...
1462s Selecting previously unselected package r-bioc-iranges.
1462s Preparing to unpack .../147-r-bioc-iranges_2.40.1-2_amd64.deb ...
1462s Unpacking r-bioc-iranges (2.40.1-2) ...
1462s Selecting previously unselected package r-cran-dbi.
1462s Preparing to unpack .../148-r-cran-dbi_1.2.3-1_all.deb ...
1462s Unpacking r-cran-dbi (1.2.3-1) ...
1462s Selecting previously unselected package r-cran-bit.
1462s Preparing to unpack .../149-r-cran-bit_4.6.0+dfsg-1_amd64.deb ...
1462s Unpacking r-cran-bit (4.6.0+dfsg-1) ...
1463s Selecting previously unselected package r-cran-bit64.
1463s Preparing to unpack .../150-r-cran-bit64_4.6.0-1-1ubuntu2_amd64.deb ...
1463s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ...
1463s Selecting previously unselected package r-cran-rlang.
1463s Preparing to unpack .../151-r-cran-rlang_1.1.5-1_amd64.deb ...
1463s Unpacking r-cran-rlang (1.1.5-1) ...
1463s Selecting previously unselected package r-cran-cli.
1463s Preparing to unpack .../152-r-cran-cli_3.6.4-1_amd64.deb ...
1463s Unpacking r-cran-cli (3.6.4-1) ...
1463s Selecting previously unselected package r-cran-glue.
1463s Preparing to unpack .../153-r-cran-glue_1.8.0-1_amd64.deb ...
1463s Unpacking r-cran-glue (1.8.0-1) ...
1463s Selecting previously unselected package r-cran-lifecycle.
1463s Preparing to unpack .../154-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
1463s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
1463s Selecting previously unselected package r-cran-vctrs.
1463s Preparing to unpack .../155-r-cran-vctrs_0.6.5-1_amd64.deb ...
1463s Unpacking r-cran-vctrs (0.6.5-1) ...
1463s Selecting previously unselected package r-cran-blob.
1463s Preparing to unpack .../156-r-cran-blob_1.2.4-1_all.deb ...
1463s Unpacking r-cran-blob (1.2.4-1) ...
1463s Selecting previously unselected package r-cran-fastmap.
1463s Preparing to unpack .../157-r-cran-fastmap_1.2.0-1_amd64.deb ...
1463s Unpacking r-cran-fastmap (1.2.0-1) ...
1463s Selecting previously unselected package r-cran-cachem.
1463s Preparing to unpack .../158-r-cran-cachem_1.1.0-1_amd64.deb ...
1463s Unpacking r-cran-cachem (1.1.0-1) ...
1463s Selecting previously unselected package r-cran-memoise.
1463s Preparing to unpack .../159-r-cran-memoise_2.0.1-1_all.deb ...
1463s Unpacking r-cran-memoise (2.0.1-1) ...
1463s Selecting previously unselected package r-cran-pkgconfig.
1463s Preparing to unpack .../160-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
1463s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
1463s Selecting previously unselected package r-cran-plogr.
1463s Preparing to unpack .../161-r-cran-plogr_0.2.0-3build1_all.deb ...
1463s Unpacking r-cran-plogr (0.2.0-3build1) ...
1463s Selecting previously unselected package r-cran-cpp11.
1463s Preparing to unpack .../162-r-cran-cpp11_0.5.2-1_all.deb ...
1463s Unpacking r-cran-cpp11 (0.5.2-1) ...
1463s Selecting previously unselected package r-cran-rsqlite.
1463s Preparing to unpack .../163-r-cran-rsqlite_2.3.9-1_amd64.deb ...
1463s Unpacking r-cran-rsqlite (2.3.9-1) ...
1463s Selecting previously unselected package r-cran-curl.
1463s Preparing to unpack .../164-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ...
1463s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
1463s Selecting previously unselected package r-cran-jsonlite.
1463s Preparing to unpack .../165-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ...
1463s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ...
1463s Selecting previously unselected package r-cran-mime.
1463s Preparing to unpack .../166-r-cran-mime_0.12-2_amd64.deb ...
1463s Unpacking r-cran-mime (0.12-2) ...
1463s Selecting previously unselected package r-cran-sys.
1463s Preparing to unpack .../167-r-cran-sys_3.4.3-1_amd64.deb ...
1463s Unpacking r-cran-sys (3.4.3-1) ...
1463s Selecting previously unselected package r-cran-askpass.
1463s Preparing to unpack .../168-r-cran-askpass_1.2.1-1_amd64.deb ...
1463s Unpacking r-cran-askpass (1.2.1-1) ...
1463s Selecting previously unselected package r-cran-openssl.
1463s Preparing to unpack .../169-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ...
1463s Unpacking r-cran-openssl (2.3.2+dfsg-1) ...
1463s Selecting previously unselected package r-cran-r6.
1463s Preparing to unpack .../170-r-cran-r6_2.6.1-1_all.deb ...
1463s Unpacking r-cran-r6 (2.6.1-1) ...
1463s Selecting previously unselected package r-cran-httr.
1463s Preparing to unpack .../171-r-cran-httr_1.4.7+dfsg-1_all.deb ...
1463s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
1463s Selecting previously unselected package r-cran-png.
1463s Preparing to unpack .../172-r-cran-png_0.1-8-1build2_amd64.deb ...
1463s Unpacking r-cran-png (0.1-8-1build2) ...
1463s Selecting previously unselected package r-bioc-zlibbioc.
1463s Preparing to unpack .../173-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ...
1463s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ...
1463s Selecting previously unselected package r-bioc-xvector.
1463s Preparing to unpack .../174-r-bioc-xvector_0.46.0-2_amd64.deb ...
1463s Unpacking r-bioc-xvector (0.46.0-2) ...
1463s Selecting previously unselected package r-bioc-ucsc.utils.
1463s Preparing to unpack .../175-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ...
1463s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ...
1463s Selecting previously unselected package r-bioc-genomeinfodbdata.
1463s Preparing to unpack .../176-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ...
1463s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ...
1464s Selecting previously unselected package r-bioc-genomeinfodb.
1464s Preparing to unpack .../177-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ...
1464s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
1464s Selecting previously unselected package r-cran-crayon.
1464s Preparing to unpack .../178-r-cran-crayon_1.5.3-1_all.deb ...
1464s Unpacking r-cran-crayon (1.5.3-1) ...
1464s Selecting previously unselected package r-bioc-biostrings.
1464s Preparing to unpack .../179-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ...
1464s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ...
1464s Selecting previously unselected package r-bioc-keggrest.
1464s Preparing to unpack .../180-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ...
1464s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ...
1464s Selecting previously unselected package r-bioc-annotationdbi.
1464s Preparing to unpack .../181-r-bioc-annotationdbi_1.68.0-2_all.deb ...
1464s Unpacking r-bioc-annotationdbi (1.68.0-2) ...
1464s Selecting previously unselected package r-bioc-biocio.
1464s Preparing to unpack .../182-r-bioc-biocio_1.16.0+dfsg-2_all.deb ...
1464s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ...
1464s Selecting previously unselected package r-cran-formatr.
1464s Preparing to unpack .../183-r-cran-formatr_1.14-2_all.deb ...
1464s Unpacking r-cran-formatr (1.14-2) ...
1464s Selecting previously unselected package r-cran-lambda.r.
1464s Preparing to unpack .../184-r-cran-lambda.r_1.2.4-2build1_all.deb ...
1464s Unpacking r-cran-lambda.r (1.2.4-2build1) ...
1464s Selecting previously unselected package r-cran-futile.options.
1464s Preparing to unpack .../185-r-cran-futile.options_1.0.1-3build1_all.deb ...
1464s Unpacking r-cran-futile.options (1.0.1-3build1) ...
1464s Selecting previously unselected package r-cran-futile.logger.
1464s Preparing to unpack .../186-r-cran-futile.logger_1.4.3-4build1_all.deb ...
1464s Unpacking r-cran-futile.logger (1.4.3-4build1) ...
1464s Selecting previously unselected package r-cran-snow.
1464s Preparing to unpack .../187-r-cran-snow_1%3a0.4.4-2_all.deb ...
1464s Unpacking r-cran-snow (1:0.4.4-2) ...
1464s Selecting previously unselected package r-cran-codetools.
1464s Preparing to unpack .../188-r-cran-codetools_0.2-20-1_all.deb ...
1464s Unpacking r-cran-codetools (0.2-20-1) ...
1464s Selecting previously unselected package r-cran-bh.
1464s Preparing to unpack .../189-r-cran-bh_1.84.0-1_all.deb ...
1464s Unpacking r-cran-bh (1.84.0-1) ...
1464s Selecting previously unselected package r-bioc-biocparallel.
1464s Preparing to unpack .../190-r-bioc-biocparallel_1.40.0-2_amd64.deb ...
1464s Unpacking r-bioc-biocparallel (1.40.0-2) ...
1464s Selecting previously unselected package r-cran-base64enc.
1464s Preparing to unpack .../191-r-cran-base64enc_0.1-3-3_amd64.deb ...
1464s Unpacking r-cran-base64enc (0.1-3-3) ...
1464s Selecting previously unselected package r-cran-digest.
1464s Preparing to unpack .../192-r-cran-digest_0.6.37-1_amd64.deb ...
1464s Unpacking r-cran-digest (0.6.37-1) ...
1464s Selecting previously unselected package r-cran-htmltools.
1464s Preparing to unpack .../193-r-cran-htmltools_0.5.8.1-1_amd64.deb ...
1464s Unpacking r-cran-htmltools (0.5.8.1-1) ...
1464s Selecting previously unselected package r-cran-evaluate.
1464s Preparing to unpack .../194-r-cran-evaluate_1.0.3-1_all.deb ...
1464s Unpacking r-cran-evaluate (1.0.3-1) ...
1464s Selecting previously unselected package r-cran-xfun.
1464s Preparing to unpack .../195-r-cran-xfun_0.51+dfsg-1_amd64.deb ...
1464s Unpacking r-cran-xfun (0.51+dfsg-1) ...
1464s Selecting previously unselected package r-cran-highr.
1464s Preparing to unpack .../196-r-cran-highr_0.11+dfsg-1_all.deb ...
1464s Unpacking r-cran-highr (0.11+dfsg-1) ...
1464s Selecting previously unselected package r-cran-yaml.
1464s Preparing to unpack .../197-r-cran-yaml_2.3.10-1_amd64.deb ...
1464s Unpacking r-cran-yaml (2.3.10-1) ...
1464s Selecting previously unselected package libjs-mathjax.
1464s Preparing to unpack .../198-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
1464s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
1465s Selecting previously unselected package r-cran-knitr.
1465s Preparing to unpack .../199-r-cran-knitr_1.49+dfsg-1_all.deb ...
1465s Unpacking r-cran-knitr (1.49+dfsg-1) ...
1465s Selecting previously unselected package r-cran-jquerylib.
1465s Preparing to unpack .../200-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ...
1465s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ...
1465s Selecting previously unselected package r-cran-fs.
1465s Preparing to unpack .../201-r-cran-fs_1.6.5+dfsg-1_amd64.deb ...
1465s Unpacking r-cran-fs (1.6.5+dfsg-1) ...
1465s Selecting previously unselected package r-cran-rappdirs.
1465s Preparing to unpack .../202-r-cran-rappdirs_0.3.3-1_amd64.deb ...
1465s Unpacking r-cran-rappdirs (0.3.3-1) ...
1465s Selecting previously unselected package r-cran-sass.
1465s Preparing to unpack .../203-r-cran-sass_0.4.9+dfsg-1_amd64.deb ...
1465s Unpacking r-cran-sass (0.4.9+dfsg-1) ...
1465s Selecting previously unselected package r-cran-bslib.
1465s Preparing to unpack .../204-r-cran-bslib_0.8.0+dfsg-1_all.deb ...
1465s Unpacking r-cran-bslib (0.8.0+dfsg-1) ...
1465s Selecting previously unselected package r-cran-fontawesome.
1465s Preparing to unpack .../205-r-cran-fontawesome_0.5.3-1_all.deb ...
1465s Unpacking r-cran-fontawesome (0.5.3-1) ...
1465s Selecting previously unselected package r-cran-tinytex.
1466s Preparing to unpack .../206-r-cran-tinytex_0.56-1_all.deb ...
1466s Unpacking r-cran-tinytex (0.56-1) ...
1466s Selecting previously unselected package libjs-modernizr.
1466s Preparing to unpack .../207-libjs-modernizr_3.13.0-0.1_all.deb ...
1466s Unpacking libjs-modernizr (3.13.0-0.1) ...
1466s Selecting previously unselected package r-cran-pkgkitten.
1466s Preparing to unpack .../208-r-cran-pkgkitten_0.2.4-1_all.deb ...
1466s Unpacking r-cran-pkgkitten (0.2.4-1) ...
1466s Selecting previously unselected package r-cran-rcpp.
1466s Preparing to unpack .../209-r-cran-rcpp_1.0.14-1_amd64.deb ...
1466s Unpacking r-cran-rcpp (1.0.14-1) ...
1466s Selecting previously unselected package r-cran-later.
1466s Preparing to unpack .../210-r-cran-later_1.4.1+dfsg-1_amd64.deb ...
1466s Unpacking r-cran-later (1.4.1+dfsg-1) ...
1466s Selecting previously unselected package r-cran-magrittr.
1466s Preparing to unpack .../211-r-cran-magrittr_2.0.3-1_amd64.deb ...
1466s Unpacking r-cran-magrittr (2.0.3-1) ...
1466s Selecting previously unselected package r-cran-promises.
1466s Preparing to unpack .../212-r-cran-promises_1.3.2+dfsg-1_amd64.deb ...
1466s Unpacking r-cran-promises (1.3.2+dfsg-1) ...
1466s Selecting previously unselected package r-cran-httpuv.
1466s Preparing to unpack .../213-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ...
1466s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ...
1466s Selecting previously unselected package r-cran-xtable.
1466s Preparing to unpack .../214-r-cran-xtable_1%3a1.8-4-2_all.deb ...
1466s Unpacking r-cran-xtable (1:1.8-4-2) ...
1466s Selecting previously unselected package r-cran-sourcetools.
1466s Preparing to unpack .../215-r-cran-sourcetools_0.1.7-1-1_amd64.deb ...
1466s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
1466s Selecting previously unselected package r-cran-withr.
1466s Preparing to unpack .../216-r-cran-withr_3.0.2+dfsg-1_all.deb ...
1466s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
1466s Selecting previously unselected package r-cran-commonmark.
1466s Preparing to unpack .../217-r-cran-commonmark_1.9.2-2_amd64.deb ...
1466s Unpacking r-cran-commonmark (1.9.2-2) ...
1466s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
1466s Preparing to unpack .../218-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ...
1466s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
1466s Selecting previously unselected package r-cran-shiny.
1466s Preparing to unpack .../219-r-cran-shiny_1.10.0+dfsg-2_all.deb ...
1466s Unpacking r-cran-shiny (1.10.0+dfsg-2) ...
1466s Selecting previously unselected package r-cran-rmarkdown.
1466s Preparing to unpack .../220-r-cran-rmarkdown_2.29+dfsg-1_all.deb ...
1466s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ...
1466s Selecting previously unselected package r-cran-bookdown.
1466s Preparing to unpack .../221-r-cran-bookdown_0.42+dfsg-1_all.deb ...
1466s Unpacking r-cran-bookdown (0.42+dfsg-1) ...
1466s Selecting previously unselected package r-cran-biocmanager.
1466s Preparing to unpack .../222-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ...
1466s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ...
1466s Selecting previously unselected package tex-common.
1466s Preparing to unpack .../223-tex-common_6.19_all.deb ...
1466s Unpacking tex-common (6.19) ...
1466s Selecting previously unselected package t1utils.
1466s Preparing to unpack .../224-t1utils_1.41-4build3_amd64.deb ...
1466s Unpacking t1utils (1.41-4build3) ...
1466s Selecting previously unselected package texlive-binaries.
1466s Preparing to unpack .../225-texlive-binaries_2024.20240313.70630+ds-5build2_amd64.deb ...
1466s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ...
1467s Selecting previously unselected package texlive-base.
1467s Preparing to unpack .../226-texlive-base_2024.20250114-1_all.deb ...
1467s Unpacking texlive-base (2024.20250114-1) ...
1467s Selecting previously unselected package texlive-latex-base.
1467s Preparing to unpack .../227-texlive-latex-base_2024.20250114-1_all.deb ...
1467s Unpacking texlive-latex-base (2024.20250114-1) ...
1468s Selecting previously unselected package texlive-bibtex-extra.
1468s Preparing to unpack .../228-texlive-bibtex-extra_2024.20250114-1_all.deb ...
1468s Unpacking texlive-bibtex-extra (2024.20250114-1) ...
1469s Selecting previously unselected package r-bioc-biocversion.
1469s Preparing to unpack .../229-r-bioc-biocversion_3.20.0-2_all.deb ...
1469s Unpacking r-bioc-biocversion (3.20.0-2) ...
1469s Selecting previously unselected package r-bioc-biocstyle.
1469s Preparing to unpack .../230-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ...
1469s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ...
1469s Selecting previously unselected package r-bioc-genomicranges.
1469s Preparing to unpack .../231-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ...
1469s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ...
1470s Selecting previously unselected package r-cran-xml.
1470s Preparing to unpack .../232-r-cran-xml_3.99-0.18-1_amd64.deb ...
1470s Unpacking r-cran-xml (3.99-0.18-1) ...
1470s Selecting previously unselected package r-cran-bitops.
1470s Preparing to unpack .../233-r-cran-bitops_1.0-9-1_amd64.deb ...
1470s Unpacking r-cran-bitops (1.0-9-1) ...
1470s Selecting previously unselected package r-bioc-rhtslib.
1470s Preparing to unpack .../234-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ...
1470s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ...
1470s Selecting previously unselected package r-bioc-rsamtools.
1470s Preparing to unpack .../235-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ...
1470s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ...
1470s Selecting previously unselected package r-cran-matrixstats.
1470s Preparing to unpack .../236-r-cran-matrixstats_1.5.0-1_amd64.deb ...
1470s Unpacking r-cran-matrixstats (1.5.0-1) ...
1470s Selecting previously unselected package r-bioc-matrixgenerics.
1470s Preparing to unpack .../237-r-bioc-matrixgenerics_1.18.1-1_all.deb ...
1470s Unpacking r-bioc-matrixgenerics (1.18.1-1) ...
1470s Selecting previously unselected package r-cran-lattice.
1470s Preparing to unpack .../238-r-cran-lattice_0.22-6-1_amd64.deb ...
1470s Unpacking r-cran-lattice (0.22-6-1) ...
1470s Selecting previously unselected package r-cran-matrix.
1470s Preparing to unpack .../239-r-cran-matrix_1.7-3-1_amd64.deb ...
1470s Unpacking r-cran-matrix (1.7-3-1) ...
1470s Selecting previously unselected package r-cran-abind.
1470s Preparing to unpack .../240-r-cran-abind_1.4-8-1_all.deb ...
1470s Unpacking r-cran-abind (1.4-8-1) ...
1470s Selecting previously unselected package r-bioc-s4arrays.
1470s Preparing to unpack .../241-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ...
1470s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ...
1470s Selecting previously unselected package r-bioc-sparsearray.
1470s Preparing to unpack .../242-r-bioc-sparsearray_1.6.2+dfsg-1_amd64.deb ...
1470s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ...
1470s Selecting previously unselected package r-bioc-delayedarray.
1470s Preparing to unpack .../243-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ...
1470s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ...
1470s Selecting previously unselected package r-bioc-summarizedexperiment.
1470s Preparing to unpack .../244-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ...
1470s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
1470s Selecting previously unselected package r-bioc-genomicalignments.
1470s Preparing to unpack .../245-r-bioc-genomicalignments_1.42.0-2_amd64.deb ...
1470s Unpacking r-bioc-genomicalignments (1.42.0-2) ...
1470s Selecting previously unselected package r-cran-rcurl.
1470s Preparing to unpack .../246-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ...
1470s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ...
1470s Selecting previously unselected package r-cran-rjson.
1470s Preparing to unpack .../247-r-cran-rjson_0.2.23-1_amd64.deb ...
1470s Unpacking r-cran-rjson (0.2.23-1) ...
1470s Selecting previously unselected package r-cran-restfulr.
1470s Preparing to unpack .../248-r-cran-restfulr_0.0.15-1_amd64.deb ...
1470s Unpacking r-cran-restfulr (0.0.15-1) ...
1470s Selecting previously unselected package r-bioc-rtracklayer.
1470s Preparing to unpack .../249-r-bioc-rtracklayer_1.66.0-2_amd64.deb ...
1470s Unpacking r-bioc-rtracklayer (1.66.0-2) ...
1470s Selecting previously unselected package r-bioc-bsgenome.
1470s Preparing to unpack .../250-r-bioc-bsgenome_1.74.0-2_all.deb ...
1470s Unpacking r-bioc-bsgenome (1.74.0-2) ...
1470s Selecting previously unselected package r-bioc-genomicfeatures.
1470s Preparing to unpack .../251-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ...
1470s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ...
1470s Selecting previously unselected package r-bioc-pwalign.
1470s Preparing to unpack .../252-r-bioc-pwalign_1.2.0-2_amd64.deb ...
1470s Unpacking r-bioc-pwalign (1.2.0-2) ...
1471s Selecting previously unselected package r-cran-hwriter.
1471s Preparing to unpack .../253-r-cran-hwriter_1.3.2.1-1_all.deb ...
1471s Unpacking r-cran-hwriter (1.3.2.1-1) ...
1471s Selecting previously unselected package r-cran-jpeg.
1471s Preparing to unpack .../254-r-cran-jpeg_0.1-10-1_amd64.deb ...
1471s Unpacking r-cran-jpeg (0.1-10-1) ...
1471s Selecting previously unselected package r-cran-rcolorbrewer.
1471s Preparing to unpack .../255-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
1471s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
1471s Selecting previously unselected package r-cran-deldir.
1471s Preparing to unpack .../256-r-cran-deldir_2.0-4-1build1_amd64.deb ...
1471s Unpacking r-cran-deldir (2.0-4-1build1) ...
1471s Selecting previously unselected package r-cran-rcppeigen.
1471s Preparing to unpack .../257-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ...
1471s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ...
1471s Selecting previously unselected package r-cran-interp.
1471s Preparing to unpack .../258-r-cran-interp_1.1-6-1_amd64.deb ...
1471s Unpacking r-cran-interp (1.1-6-1) ...
1471s Selecting previously unselected package r-cran-mass.
1471s Preparing to unpack .../259-r-cran-mass_7.3-64-1_amd64.deb ...
1471s Unpacking r-cran-mass (7.3-64-1) ...
1471s Selecting previously unselected package r-cran-latticeextra.
1471s Preparing to unpack .../260-r-cran-latticeextra_0.6-30-1_all.deb ...
1471s Unpacking r-cran-latticeextra (0.6-30-1) ...
1471s Selecting previously unselected package r-bioc-shortread.
1471s Preparing to unpack .../261-r-bioc-shortread_1.64.0-3_amd64.deb ...
1471s Unpacking r-bioc-shortread (1.64.0-3) ...
1471s Selecting previously unselected package r-bioc-variantannotation.
1471s Preparing to unpack .../262-r-bioc-variantannotation_1.52.0-2_amd64.deb ...
1471s Unpacking r-bioc-variantannotation (1.52.0-2) ...
1471s Selecting previously unselected package r-cran-backports.
1471s Preparing to unpack .../263-r-cran-backports_1.5.0-2_amd64.deb ...
1471s Unpacking r-cran-backports (1.5.0-2) ...
1471s Selecting previously unselected package r-cran-base64url.
1471s Preparing to unpack .../264-r-cran-base64url_1.4-2build1_amd64.deb ...
1471s Unpacking r-cran-base64url (1.4-2build1) ...
1471s Selecting previously unselected package r-cran-brew.
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1471s Selecting previously unselected package r-cran-checkmate.
1471s Preparing to unpack .../266-r-cran-checkmate_2.3.2-1_amd64.deb ...
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1471s Selecting previously unselected package r-cran-data.table.
1471s Preparing to unpack .../267-r-cran-data.table_1.17.0+dfsg-1_amd64.deb ...
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1471s Selecting previously unselected package r-cran-hms.
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1471s Selecting previously unselected package r-cran-prettyunits.
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1471s Selecting previously unselected package r-cran-progress.
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1471s Selecting previously unselected package r-cran-stringi.
1471s Preparing to unpack .../271-r-cran-stringi_1.8.4-1build1_amd64.deb ...
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1472s Setting up libjs-json (0~20221030+~1.0.8-1) ...
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1472s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ...
1472s Setting up liblapack3:amd64 (3.12.1-2) ...
1472s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
1472s Setting up libpcre2-dev:amd64 (10.45-1) ...
1472s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
1473s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
1473s Setting up libpng-dev:amd64 (1.6.47-1) ...
1473s Setting up libpaper-utils (2.2.5-0.3) ...
1473s Setting up libbibtex-parser-perl (1.05+dfsg-1) ...
1473s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ...
1473s Setting up pkgconf:amd64 (1.8.1-4) ...
1473s Setting up libthai0:amd64 (0.1.29-2build1) ...
1473s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
1473s Setting up libptexenc1:amd64 (2024.20240313.70630+ds-5build2) ...
1473s Setting up pandoc (3.1.11.1+ds-2) ...
1473s Setting up liblapack-dev:amd64 (3.12.1-2) ...
1473s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
1473s Setting up cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
1473s Setting up cpp-14 (14.2.0-17ubuntu3) ...
1473s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ...
1473s Setting up libfontconfig1:amd64 (2.15.0-2ubuntu1) ...
1473s Setting up libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ...
1473s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ...
1473s Setting up libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ...
1473s Setting up libsm6:amd64 (2:1.2.4-1) ...
1473s Setting up cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
1473s Setting up libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ...
1473s Setting up fontconfig (2.15.0-2ubuntu1) ...
1475s Regenerating fonts cache... done.
1475s Setting up libxft2:amd64 (2.3.6-1build1) ...
1475s Setting up libboost1.83-dev:amd64 (1.83.0-4.1ubuntu2) ...
1475s Setting up libtk8.6:amd64 (8.6.16-1) ...
1475s Setting up libpango-1.0-0:amd64 (1.56.2-1) ...
1475s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ...
1475s Setting up libcairo2:amd64 (1.18.2-2) ...
1475s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ...
1475s Setting up cpp (4:14.2.0-1ubuntu1) ...
1475s Setting up libboost-dev:amd64 (1.83.0.2ubuntu1) ...
1475s Setting up gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
1475s Setting up libpangoft2-1.0-0:amd64 (1.56.2-1) ...
1475s Setting up libpangocairo-1.0-0:amd64 (1.56.2-1) ...
1475s Setting up libxmu6:amd64 (2:1.1.3-3build2) ...
1475s Setting up gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
1475s Setting up libxaw7:amd64 (2:1.0.16-1) ...
1475s Setting up gcc-14 (14.2.0-17ubuntu3) ...
1475s Setting up gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
1475s Setting up r-base-core (4.4.3-1) ...
1475s Creating config file /etc/R/Renviron with new version
1475s Setting up r-cran-crayon (1.5.3-1) ...
1475s Setting up r-cran-sourcetools (0.1.7-1-1) ...
1475s Setting up r-cran-futile.options (1.0.1-3build1) ...
1475s Setting up r-cran-lattice (0.22-6-1) ...
1475s Setting up g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
1475s Setting up r-cran-formatr (1.14-2) ...
1475s Setting up r-cran-xml (3.99-0.18-1) ...
1475s Setting up texlive-binaries (2024.20240313.70630+ds-5build2) ...
1475s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
1475s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
1475s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
1475s Setting up r-cran-commonmark (1.9.2-2) ...
1475s Setting up g++-14 (14.2.0-17ubuntu3) ...
1475s Setting up r-cran-rjson (0.2.23-1) ...
1475s Setting up r-cran-r6 (2.6.1-1) ...
1475s Setting up r-cran-pkgkitten (0.2.4-1) ...
1475s Setting up r-cran-jpeg (0.1-10-1) ...
1475s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
1475s Setting up texlive-base (2024.20250114-1) ...
1476s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
1476s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
1476s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
1476s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
1477s Setting up r-cran-magrittr (2.0.3-1) ...
1477s Setting up r-cran-rappdirs (0.3.3-1) ...
1477s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ...
1477s Setting up r-cran-littler (0.3.20-2) ...
1477s Setting up r-cran-bh (1.84.0-1) ...
1477s Setting up r-cran-fs (1.6.5+dfsg-1) ...
1477s Setting up r-cran-rcpp (1.0.14-1) ...
1477s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
1477s Setting up r-cran-codetools (0.2-20-1) ...
1477s Setting up r-bioc-biocgenerics (0.52.0-2) ...
1477s Setting up r-cran-rlang (1.1.5-1) ...
1477s Setting up r-cran-matrixstats (1.5.0-1) ...
1477s Setting up littler (0.3.20-2) ...
1477s Setting up r-bioc-matrixgenerics (1.18.1-1) ...
1477s Setting up r-cran-xfun (0.51+dfsg-1) ...
1477s Setting up r-cran-sys (3.4.3-1) ...
1477s Setting up r-cran-plogr (0.2.0-3build1) ...
1477s Setting up r-cran-withr (3.0.2+dfsg-1) ...
1477s Setting up r-cran-backports (1.5.0-2) ...
1477s Setting up r-cran-mime (0.12-2) ...
1477s Setting up r-cran-base64enc (0.1-3-3) ...
1477s Setting up r-cran-iterators (1.0.14-1) ...
1477s Setting up r-cran-abind (1.4-8-1) ...
1477s Setting up r-cran-digest (0.6.37-1) ...
1477s Setting up r-cran-yaml (2.3.10-1) ...
1477s Setting up r-cran-lambda.r (1.2.4-2build1) ...
1477s Setting up r-cran-evaluate (1.0.3-1) ...
1477s Setting up r-cran-dbi (1.2.3-1) ...
1477s Setting up r-cran-highr (0.11+dfsg-1) ...
1477s Setting up r-cran-foreach (1.5.2-1) ...
1477s Setting up r-cran-prettyunits (1.2.0-1) ...
1477s Setting up r-cran-mass (7.3-64-1) ...
1477s Setting up r-cran-checkmate (2.3.2-1) ...
1477s Setting up r-cran-snow (1:0.4.4-2) ...
1477s Setting up r-cran-data.table (1.17.0+dfsg-1) ...
1477s Setting up r-cran-glue (1.8.0-1) ...
1477s Setting up r-cran-bit (4.6.0+dfsg-1) ...
1477s Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
1477s Setting up r-cran-xtable (1:1.8-4-2) ...
1477s Setting up r-cran-cli (3.6.4-1) ...
1477s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
1477s Setting up r-cran-bitops (1.0-9-1) ...
1477s Setting up r-bioc-biocversion (3.20.0-2) ...
1477s Setting up r-cran-bit64 (4.6.0-1-1ubuntu2) ...
1477s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ...
1477s Setting up gcc (4:14.2.0-1ubuntu1) ...
1477s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
1477s Setting up r-cran-deldir (2.0-4-1build1) ...
1477s Setting up r-cran-askpass (1.2.1-1) ...
1477s Setting up r-cran-fastmap (1.2.0-1) ...
1477s Setting up r-cran-png (0.1-8-1build2) ...
1477s Setting up r-bioc-biobase (2.66.0-2) ...
1477s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
1477s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
1477s Setting up r-cran-brew (1.0-10-1) ...
1477s Setting up r-cran-stringi (1.8.4-1build1) ...
1477s Setting up texlive-latex-base (2024.20250114-1) ...
1477s Setting up r-cran-hwriter (1.3.2.1-1) ...
1477s Setting up r-cran-cpp11 (0.5.2-1) ...
1477s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
1477s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
1477s Setting up r-cran-runit (0.4.33-1) ...
1477s Setting up r-cran-futile.logger (1.4.3-4build1) ...
1477s Setting up r-cran-later (1.4.1+dfsg-1) ...
1477s Setting up r-cran-matrix (1.7-3-1) ...
1477s Setting up r-cran-doparallel (1.0.17-1) ...
1477s Setting up r-cran-htmltools (0.5.8.1-1) ...
1477s Setting up r-cran-tinytex (0.56-1) ...
1477s Setting up r-cran-knitr (1.49+dfsg-1) ...
1477s Setting up g++ (4:14.2.0-1ubuntu1) ...
1477s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
1477s Setting up r-cran-cachem (1.1.0-1) ...
1477s Setting up r-cran-sass (0.4.9+dfsg-1) ...
1477s Setting up build-essential (12.10ubuntu1) ...
1477s Setting up r-bioc-iranges (2.40.1-2) ...
1477s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ...
1477s Setting up r-cran-restfulr (0.0.15-1) ...
1477s Setting up r-cran-vctrs (0.6.5-1) ...
1477s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ...
1477s Setting up r-cran-bbmisc (1.13-1) ...
1477s Setting up r-cran-openssl (2.3.2+dfsg-1) ...
1477s Setting up r-cran-base64url (1.4-2build1) ...
1477s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ...
1477s Setting up r-bioc-biocparallel (1.40.0-2) ...
1477s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ...
1477s Setting up r-cran-fontawesome (0.5.3-1) ...
1477s Setting up r-bioc-biocio (1.16.0+dfsg-2) ...
1477s Setting up gfortran (4:14.2.0-1ubuntu1) ...
1477s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
1477s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
1477s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
1477s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
1477s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
1477s Setting up texlive-bibtex-extra (2024.20250114-1) ...
1477s Setting up r-cran-interp (1.1-6-1) ...
1477s Setting up r-cran-httr (1.4.7+dfsg-1) ...
1477s Setting up r-cran-hms (1.1.3-1) ...
1477s Setting up r-cran-memoise (2.0.1-1) ...
1477s Setting up r-cran-promises (1.3.2+dfsg-1) ...
1477s Setting up r-cran-blob (1.2.4-1) ...
1477s Setting up r-bioc-xvector (0.46.0-2) ...
1477s Setting up r-cran-rsqlite (2.3.9-1) ...
1477s Setting up r-cran-progress (1.2.3-1) ...
1477s Setting up r-base-dev (4.4.3-1) ...
1477s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
1477s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ...
1477s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
1477s Setting up r-cran-latticeextra (0.6-30-1) ...
1477s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
1477s Setting up r-cran-bslib (0.8.0+dfsg-1) ...
1477s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
1477s Setting up r-cran-batchtools (0.9.17+dfsg-1) ...
1477s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ...
1477s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ...
1477s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ...
1477s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
1477s Setting up r-cran-rmarkdown (2.29+dfsg-1) ...
1477s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ...
1477s Setting up r-cran-bookdown (0.42+dfsg-1) ...
1477s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
1477s Setting up r-bioc-pwalign (1.2.0-2) ...
1477s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ...
1477s Setting up r-bioc-annotationdbi (1.68.0-2) ...
1477s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ...
1477s Setting up r-bioc-genomicalignments (1.42.0-2) ...
1477s Setting up r-bioc-rtracklayer (1.66.0-2) ...
1477s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ...
1477s Setting up r-bioc-shortread (1.64.0-3) ...
1477s Setting up r-bioc-bsgenome (1.74.0-2) ...
1477s Setting up r-bioc-variantannotation (1.52.0-2) ...
1477s Processing triggers for man-db (2.13.0-1) ...
1478s Processing triggers for install-info (7.1.1-1) ...
1478s Processing triggers for libc-bin (2.41-1ubuntu2) ...
1478s Processing triggers for tex-common (6.19) ...
1479s Running updmap-sys. This may take some time... done.
1479s Running mktexlsr /var/lib/texmf ... done.
1479s Building format(s) --all.
1501s 	This may take some time... done.
1503s autopkgtest [13:38:15]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
1503s autopkgtest [13:38:15]: test pkg-r-autopkgtest: [-----------------------
1503s Test: Try to load the R library BiocParallel
1503s 
1503s R version 4.4.3 (2025-02-28) -- "Trophy Case"
1503s Copyright (C) 2025 The R Foundation for Statistical Computing
1503s Platform: x86_64-pc-linux-gnu
1503s 
1503s R is free software and comes with ABSOLUTELY NO WARRANTY.
1503s You are welcome to redistribute it under certain conditions.
1503s Type 'license()' or 'licence()' for distribution details.
1503s 
1503s R is a collaborative project with many contributors.
1503s Type 'contributors()' for more information and
1503s 'citation()' on how to cite R or R packages in publications.
1503s 
1503s Type 'demo()' for some demos, 'help()' for on-line help, or
1503s 'help.start()' for an HTML browser interface to help.
1503s Type 'q()' to quit R.
1503s 
1503s > library('BiocParallel')
1503s > 
1503s > 
1503s Other tests are currently unsupported!
1503s They will be progressively added.
1504s autopkgtest [13:38:16]: test pkg-r-autopkgtest: -----------------------]
1504s autopkgtest [13:38:16]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
1504s pkg-r-autopkgtest    PASS
1505s autopkgtest [13:38:17]: @@@@@@@@@@@@@@@@@@@@ summary
1505s pkg-r-autopkgtest    PASS
1510s nova [W] Skipping flock for amd64
1510s Creating nova instance adt-plucky-amd64-r-bioc-biocparallel-20250315-131312-juju-7f2275-prod-proposed-migration-environment-15-771fe8dc-31dd-4c33-ae33-8412a5af8e63 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)...
1510s nova [W] Timed out waiting for f200006b-d637-473e-b475-2f1207ecc3c8 to get deleted.