0s autopkgtest [17:45:25]: starting date and time: 2025-03-15 17:45:25+0000 0s autopkgtest [17:45:25]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [17:45:25]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.lb9wmjo7/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-biocneighbors --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-11.secgroup --name adt-plucky-amd64-r-bioc-biocneighbors-20250315-170417-juju-7f2275-prod-proposed-migration-environment-20-c4f50fb1-b4c5-4157-8677-0e2b40d8b658 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 93s autopkgtest [17:46:58]: testbed dpkg architecture: amd64 93s autopkgtest [17:46:58]: testbed apt version: 2.9.31ubuntu1 94s autopkgtest [17:46:59]: @@@@@@@@@@@@@@@@@@@@ test bed setup 94s autopkgtest [17:46:59]: testbed release detected to be: None 95s autopkgtest [17:47:00]: updating testbed package index (apt update) 95s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 95s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 95s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 95s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 95s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 96s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 96s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 96s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [123 kB] 96s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [97.6 kB] 96s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1884 B] 96s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 96s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [167 kB] 96s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [335 kB] 97s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [16.0 kB] 97s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8452 B] 97s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [17.0 kB] 97s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 97s Fetched 1387 kB in 2s (744 kB/s) 98s Reading package lists... 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 99s Calculating upgrade... 99s Calculating upgrade... 99s The following package was automatically installed and is no longer required: 99s libnl-genl-3-200 99s Use 'sudo apt autoremove' to remove it. 99s The following NEW packages will be installed: 99s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 99s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 99s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 99s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 99s The following packages will be upgraded: 99s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 99s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 99s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 99s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 99s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 99s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 99s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 99s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 99s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 99s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 99s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 99s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 99s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 99s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 99s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 99s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 99s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 99s parted pci.ids pciutils pinentry-curses python-apt-common python3 99s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 99s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 99s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 99s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 99s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 99s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 99s xz-utils 99s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 99s Need to get 829 MB of archives. 99s After this operation, 325 MB of additional disk space will be used. 99s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 100s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 100s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 103s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 106s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 109s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 109s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 111s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 111s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 111s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 111s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 111s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 111s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 112s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 112s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 112s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 112s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 112s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 112s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 113s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 113s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 115s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 118s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 118s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 119s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 119s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 120s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 120s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 120s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 120s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 120s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 120s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 120s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 121s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 122s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 122s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 122s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 122s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 125s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 125s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 125s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 125s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 125s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 126s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 126s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 129s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 130s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 131s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 131s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 132s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 132s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 132s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 132s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 132s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 132s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 132s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 133s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 133s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 133s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 133s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 133s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 133s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 134s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 134s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 134s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 134s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 134s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 134s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 134s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 135s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 135s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 135s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 135s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 135s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 135s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 136s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 136s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 136s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 136s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 136s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 136s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 136s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 137s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 137s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 137s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 137s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 138s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 138s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 138s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 139s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 139s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 139s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 139s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 139s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 139s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 139s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 140s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 140s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 140s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 140s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 140s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 141s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 141s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 141s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 142s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 146s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 146s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 146s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 146s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 694s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 694s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 694s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 694s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 694s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 694s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 695s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 695s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 732s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 746s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 841s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 841s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 841s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 841s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 841s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 841s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 851s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 854s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 854s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 857s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 858s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 858s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 858s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 858s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 858s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 858s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 858s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 858s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 858s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 859s Preconfiguring packages ... 859s Fetched 829 MB in 12min 39s (1091 kB/s) 859s (Reading database ... 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.../73-linux-headers-generic_6.14.0-10.10_amd64.deb ... 881s Unpacking linux-headers-generic (6.14.0-10.10) over (6.12.0-16.16+2) ... 881s Selecting previously unselected package linux-perf. 881s Preparing to unpack .../74-linux-perf_6.14.0-10.10_amd64.deb ... 881s Unpacking linux-perf (6.14.0-10.10) ... 881s Selecting previously unselected package linux-tools-6.14.0-10. 881s Preparing to unpack .../75-linux-tools-6.14.0-10_6.14.0-10.10_amd64.deb ... 881s Unpacking linux-tools-6.14.0-10 (6.14.0-10.10) ... 881s Selecting previously unselected package linux-tools-6.14.0-10-generic. 881s Preparing to unpack .../76-linux-tools-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 881s Unpacking linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 881s Preparing to unpack .../77-pinentry-curses_1.3.1-2ubuntu3_amd64.deb ... 881s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 881s Preparing to unpack .../78-python3-lazr.uri_1.0.6-6_all.deb ... 881s Unpacking python3-lazr.uri (1.0.6-6) over (1.0.6-5) ... 881s Preparing to unpack .../79-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ... 881s Unpacking python3-rpds-py (0.21.0-2ubuntu2) over (0.21.0-2ubuntu1) ... 881s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 881s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 881s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 881s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 881s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 881s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 881s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 881s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 881s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 881s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 881s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 881s Setting up media-types (13.0.0) ... 881s Installing new version of config file /etc/mime.types ... 881s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 881s Setting up ubuntu-kernel-accessories (1.549) ... 881s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 881s Setting up pci.ids (0.0~2025.03.09-1) ... 881s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 881s Setting up apt-utils (2.9.33) ... 881s Setting up libdebuginfod-common (0.192-4) ... 882s Setting up exfatprogs (1.2.8-1) ... 882s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 882s Setting up bpftool (7.6.0+6.14.0-10.10) ... 882s Setting up libestr0:amd64 (0.1.11-2) ... 882s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 882s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 882s Setting up dosfstools (4.2-1.2) ... 882s Setting up rsyslog (8.2412.0-2ubuntu2) ... 882s info: The user `syslog' is already a member of `adm'. 883s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 883s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 883s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 883s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 883s Setting up systemd (257.3-1ubuntu3) ... 883s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 883s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 883s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 883s Setting up libparted2t64:amd64 (3.6-5) ... 883s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 883s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 883s Setting up linux-headers-generic (6.14.0-10.10) ... 883s Setting up libjemalloc2:amd64 (5.3.0-3) ... 883s Setting up locales (2.41-1ubuntu1) ... 883s Installing new version of config file /etc/locale.alias ... 884s Generating locales (this might take a while)... 886s en_US.UTF-8... done 886s Generation complete. 886s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 886s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 886s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 886s Installing new version of config file /etc/apparmor.d/fusermount3 ... 886s Installing new version of config file /etc/apparmor.d/lsusb ... 886s Installing new version of config file /etc/apparmor.d/openvpn ... 887s Reloading AppArmor profiles 888s Setting up libftdi1-2:amd64 (1.5-8build1) ... 888s Setting up libglib2.0-data (2.84.0-1) ... 888s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 888s Setting up libncurses6:amd64 (6.5+20250216-2) ... 888s Setting up strace (6.13+ds-1ubuntu1) ... 888s Setting up xz-utils (5.6.4-1) ... 888s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 889s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 889s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 889s Setting up udev (257.3-1ubuntu3) ... 890s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 892s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 892s Setting up libpci3:amd64 (1:3.13.0-2) ... 892s Setting up whiptail (0.52.24-4ubuntu2) ... 892s Setting up python-apt-common (2.9.9build1) ... 892s Setting up pnp.ids (0.393-3) ... 892s Setting up libnl-3-200:amd64 (3.7.0-1) ... 892s Setting up python3.13-minimal (3.13.2-2) ... 892s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 892s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 892s Setting up libc-dev-bin (2.41-1ubuntu1) ... 892s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 892s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 892s Setting up rsync (3.4.1+ds1-3) ... 893s rsync.service is a disabled or a static unit not running, not starting it. 893s Setting up python3.13-gdbm (3.13.2-2) ... 893s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 893s Setting up systemd-resolved (257.3-1ubuntu3) ... 893s Setting up initramfs-tools-bin (0.146ubuntu1) ... 893s Setting up ncurses-term (6.5+20250216-2) ... 893s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 893s Setting up libpython3.13:amd64 (3.13.2-2) ... 893s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 893s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 893s Setting up systemd-sysv (257.3-1ubuntu3) ... 893s Setting up linux-headers-virtual (6.14.0-10.10) ... 893s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 893s Setting up python3.13 (3.13.2-2) ... 894s Setting up htop (3.4.0-2) ... 894s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 896s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 896s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 896s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 896s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 896s Setting up parted (3.6-5) ... 896s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 896s Setting up python3 (3.13.2-2) ... 897s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 897s Setting up python3-markupsafe (2.1.5-1build4) ... 897s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 899s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 899s Setting up hwdata (0.393-3) ... 899s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 899s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 899s No schema files found: doing nothing. 899s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 899s Setting up linux-perf (6.14.0-10.10) ... 899s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 899s Setting up pciutils (1:3.13.0-2) ... 899s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 899s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 899s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 899s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 899s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 899s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 899s Setting up curl (8.12.1-3ubuntu1) ... 899s Setting up linux-image-virtual (6.14.0-10.10) ... 899s Setting up initramfs-tools-core (0.146ubuntu1) ... 899s Setting up linux-tools-common (6.14.0-10.10) ... 899s Setting up python3-systemd (235-1build6) ... 899s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 899s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 899s Setting up linux-image-generic (6.14.0-10.10) ... 899s Setting up python3-dbus (1.3.2-5build5) ... 899s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 899s Setting up initramfs-tools (0.146ubuntu1) ... 899s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 899s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 899s update-initramfs: deferring update (trigger activated) 899s Setting up linux-generic (6.14.0-10.10) ... 899s Setting up ubuntu-minimal (1.549) ... 899s Setting up python3-apt (2.9.9build1) ... 900s Setting up python3-bcrypt (4.2.0-2.1build1) ... 900s Setting up python3-yaml (6.0.2-1build2) ... 900s Setting up libfwupd3:amd64 (2.0.6-4) ... 900s Setting up python3-lazr.uri (1.0.6-6) ... 900s Setting up binutils (2.44-3ubuntu1) ... 900s Setting up ubuntu-standard (1.549) ... 900s Setting up cloud-init-base (25.1-0ubuntu3) ... 901s Setting up linux-virtual (6.14.0-10.10) ... 901s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 901s Setting up python3-gi (3.50.0-4build1) ... 902s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 902s Setting up fwupd (2.0.6-4) ... 902s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 902s fwupd.service is a disabled or a static unit not running, not starting it. 902s Setting up cloud-init (25.1-0ubuntu3) ... 902s Processing triggers for man-db (2.13.0-1) ... 904s Processing triggers for dbus (1.16.2-1ubuntu1) ... 904s Processing triggers for shared-mime-info (2.4-5) ... 904s Warning: program compiled against libxml 212 using older 209 904s Processing triggers for libc-bin (2.41-1ubuntu1) ... 904s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 904s /etc/kernel/postinst.d/initramfs-tools: 904s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 904s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 915s /etc/kernel/postinst.d/zz-update-grub: 915s Sourcing file `/etc/default/grub' 915s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 915s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 915s Generating grub configuration file ... 915s Found linux image: /boot/vmlinuz-6.14.0-10-generic 915s Found initrd image: /boot/initrd.img-6.14.0-10-generic 915s Found linux image: /boot/vmlinuz-6.12.0-16-generic 915s Found initrd image: /boot/initrd.img-6.12.0-16-generic 915s Found linux image: /boot/vmlinuz-6.11.0-8-generic 915s Found initrd image: /boot/initrd.img-6.11.0-8-generic 915s Warning: os-prober will not be executed to detect other bootable partitions. 915s Systems on them will not be added to the GRUB boot configuration. 915s Check GRUB_DISABLE_OS_PROBER documentation entry. 915s Adding boot menu entry for UEFI Firmware Settings ... 915s done 915s Processing triggers for initramfs-tools (0.146ubuntu1) ... 915s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 915s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 927s Reading package lists... 927s Building dependency tree... 927s Reading state information... 927s Solving dependencies... 927s The following packages will be REMOVED: 927s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 927s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 927s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 927s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 927s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 927s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 927s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 927s linux-tools-6.12.0-16-generic* 928s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 928s After this operation, 545 MB disk space will be freed. 928s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 928s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 928s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 928s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 928s Removing libpython3.12t64:amd64 (3.12.9-1) ... 928s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 928s Removing libnsl2:amd64 (1.3.0-3build3) ... 928s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 928s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 929s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 931s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 931s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 933s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 934s /etc/kernel/postrm.d/initramfs-tools: 934s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 934s /etc/kernel/postrm.d/zz-update-grub: 934s Sourcing file `/etc/default/grub' 934s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 934s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 934s Generating grub configuration file ... 934s Found linux image: /boot/vmlinuz-6.14.0-10-generic 934s Found initrd image: /boot/initrd.img-6.14.0-10-generic 934s Found linux image: /boot/vmlinuz-6.12.0-16-generic 934s Found initrd image: /boot/initrd.img-6.12.0-16-generic 934s Warning: os-prober will not be executed to detect other bootable partitions. 934s Systems on them will not be added to the GRUB boot configuration. 934s Check GRUB_DISABLE_OS_PROBER documentation entry. 934s Adding boot menu entry for UEFI Firmware Settings ... 934s done 934s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 935s W: Removing the running kernel 935s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 935s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 935s /etc/kernel/postrm.d/initramfs-tools: 935s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 935s /etc/kernel/postrm.d/zz-update-grub: 935s Sourcing file `/etc/default/grub' 935s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 935s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 935s Generating grub configuration file ... 935s Found linux image: /boot/vmlinuz-6.14.0-10-generic 935s Found initrd image: /boot/initrd.img-6.14.0-10-generic 935s Warning: os-prober will not be executed to detect other bootable partitions. 935s Systems on them will not be added to the GRUB boot configuration. 935s Check GRUB_DISABLE_OS_PROBER documentation entry. 935s Adding boot menu entry for UEFI Firmware Settings ... 935s done 935s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 935s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 937s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 937s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 937s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 937s Processing triggers for libc-bin (2.41-1ubuntu1) ... 937s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 937s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 937s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 937s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 937s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 937s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 937s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 937s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 937s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 938s autopkgtest [18:01:03]: upgrading testbed (apt dist-upgrade and autopurge) 938s Reading package lists... 938s Building dependency tree... 938s Reading state information... 939s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 939s Starting 2 pkgProblemResolver with broken count: 0 939s Done 939s Entering ResolveByKeep 940s 940s Calculating upgrade... 940s The following packages will be upgraded: 940s libc-bin libc-dev-bin libc6 libc6-dev locales 940s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 940s Need to get 10.5 MB of archives. 940s After this operation, 1024 B of additional disk space will be used. 940s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 942s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 942s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 945s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 945s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 950s Preconfiguring packages ... 950s Fetched 10.5 MB in 9s (1136 kB/s) 950s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 950s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 950s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 950s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 950s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 950s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 950s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 950s Setting up libc6:amd64 (2.41-1ubuntu2) ... 951s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 951s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 951s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 951s Setting up libc-bin (2.41-1ubuntu2) ... 951s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 951s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 951s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 951s Setting up locales (2.41-1ubuntu2) ... 952s Generating locales (this might take a while)... 953s en_US.UTF-8... done 953s Generation complete. 953s Setting up libc-dev-bin (2.41-1ubuntu2) ... 953s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 953s Processing triggers for man-db (2.13.0-1) ... 953s Processing triggers for systemd (257.3-1ubuntu3) ... 954s Reading package lists... 955s Building dependency tree... 955s Reading state information... 955s Starting pkgProblemResolver with broken count: 0 955s Starting 2 pkgProblemResolver with broken count: 0 955s Done 955s Solving dependencies... 955s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 956s autopkgtest [18:01:21]: rebooting testbed after setup commands that affected boot 979s autopkgtest [18:01:44]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 981s autopkgtest [18:01:46]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-biocneighbors 983s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biocneighbors 2.0.1+ds-2 (dsc) [2202 B] 983s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biocneighbors 2.0.1+ds-2 (tar) [31.0 kB] 983s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biocneighbors 2.0.1+ds-2 (diff) [2868 B] 983s gpgv: Signature made Sun Jan 12 10:29:39 2025 UTC 983s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 983s gpgv: issuer "crusoe@debian.org" 983s gpgv: Can't check signature: No public key 983s dpkg-source: warning: cannot verify inline signature for ./r-bioc-biocneighbors_2.0.1+ds-2.dsc: no acceptable signature found 983s autopkgtest [18:01:48]: testing package r-bioc-biocneighbors version 2.0.1+ds-2 984s autopkgtest [18:01:49]: build not needed 989s autopkgtest [18:01:54]: test pkg-r-autopkgtest: preparing testbed 989s Reading package lists... 989s Building dependency tree... 989s Reading state information... 990s Starting pkgProblemResolver with broken count: 0 990s Starting 2 pkgProblemResolver with broken count: 0 990s Done 990s The following NEW packages will be installed: 990s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 990s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 990s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 990s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 990s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 990s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 990s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 990s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 990s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 990s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhnswlib-dev libhwasan0 990s libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 990s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 990s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 990s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 990s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 990s libjs-popper.js libjs-prettify libjs-sifter.js 990s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 990s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 990s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 990s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 990s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 990s libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev 990s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 990s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 990s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 990s libxss1 libxt6t64 libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv 990s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 990s r-base-core r-base-dev r-bioc-assorthead r-bioc-biocgenerics 990s r-bioc-biocneighbors r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion 990s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bookdown r-cran-brio 990s r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-codetools 990s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-desc r-cran-diffobj 990s r-cran-digest r-cran-evaluate r-cran-fastmap r-cran-fontawesome 990s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 990s r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-jquerylib 990s r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lifecycle 990s r-cran-littler r-cran-magrittr r-cran-memoise r-cran-mime r-cran-pkgbuild 990s r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-processx 990s r-cran-promises r-cran-ps r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rlang 990s r-cran-rmarkdown r-cran-rprojroot r-cran-sass r-cran-shiny r-cran-snow 990s r-cran-sourcetools r-cran-testthat r-cran-tinytex r-cran-waldo r-cran-withr 990s r-cran-xfun r-cran-xtable r-cran-yaml t1utils tex-common texlive-base 990s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 990s xdg-utils zip zlib1g-dev 990s 0 upgraded, 220 newly installed, 0 to remove and 0 not upgraded. 990s Need to get 346 MB of archives. 990s After this operation, 1218 MB of additional disk space will be used. 990s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 991s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 991s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 1000s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 1000s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 1000s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 1000s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 1000s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 1000s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 1000s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 1003s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 1004s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 1006s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 1008s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 1009s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 1009s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 1012s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 1032s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 1032s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 1032s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 1032s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 1034s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 1044s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 1044s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 1044s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 1044s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 1044s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 1044s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 1044s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 1045s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 1045s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 1045s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 1045s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 1045s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 1046s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 1049s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 1051s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 1051s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 1052s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 1061s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 1061s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 1061s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 1061s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 1061s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 1061s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 1061s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 1061s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 1061s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 1061s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 1061s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB] 1070s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 1071s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 1071s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 1071s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 1071s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 1071s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 1071s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 1071s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 1071s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 1071s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 1071s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 1071s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 1072s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhnswlib-dev all 0.8.0-1build3 [24.4 kB] 1072s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 1072s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 1072s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 1084s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 1084s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 1084s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 1084s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 1084s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 1084s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 1084s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 1084s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 1085s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 1085s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 1085s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 1086s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 1086s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 1086s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 1086s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 1086s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 1086s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 1086s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 1086s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 1086s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 1086s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-5build2 [67.0 kB] 1086s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 1090s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 1096s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 1097s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 1097s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 1097s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 1097s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 1098s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 1098s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 1098s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 1098s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 1098s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 1098s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 1098s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 1099s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 1099s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 1099s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 1100s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 1100s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 1101s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 1101s Get:108 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 1101s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-5build2 [43.7 kB] 1101s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 1101s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 1101s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 1101s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-5build2 [62.5 kB] 1101s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 1103s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 1103s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-5build2 [145 kB] 1103s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 1103s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 1103s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 1104s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 1104s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 1104s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 1104s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 1105s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 1105s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 1105s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 1105s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 1105s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 1105s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 1105s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 1105s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 1105s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 1134s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 1135s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 1135s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 1135s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 1135s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 1135s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 1135s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 1158s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 1159s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 1159s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 1159s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 1159s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 1159s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 1159s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 1159s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-assorthead all 1.0.1+ds-2 [194 kB] 1160s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 1160s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 1161s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocneighbors amd64 2.0.1+ds-2 [446 kB] 1162s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 1162s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 1162s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 1162s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 1162s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 1162s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 1162s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 1162s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 1162s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 1163s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 1163s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 1163s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 1163s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 1165s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 1165s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 1165s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 1166s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 1166s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 1166s Get:169 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 1171s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 1172s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 1172s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 1172s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 1172s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 1173s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 1173s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 1174s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 1174s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 1174s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 1174s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 1174s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 1174s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 1175s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 1180s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 1181s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 1181s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 1182s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 1182s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 1182s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 1182s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 1183s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 1183s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 1183s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 1183s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 1184s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 1184s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 1184s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 1187s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 1189s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 1190s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 1190s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB] 1190s Get:202 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 1191s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-5build2 [9799 kB] 1200s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB] 1223s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB] 1224s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 1300s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 1300s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 1301s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 1301s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 1301s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 1301s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 1302s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 1302s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 1303s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 1303s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] 1303s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 1304s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 1304s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-2 [150 kB] 1304s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 1306s Preconfiguring packages ... 1306s Fetched 346 MB in 5min 15s (1098 kB/s) 1306s Selecting previously unselected package libisl23:amd64. 1306s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 1306s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 1306s Unpacking libisl23:amd64 (0.27-1) ... 1306s Selecting previously unselected package libmpc3:amd64. 1306s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 1306s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 1306s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 1306s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 1306s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 1306s Selecting previously unselected package cpp-14. 1306s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 1306s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 1306s Selecting previously unselected package cpp-x86-64-linux-gnu. 1306s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 1306s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 1306s Selecting previously unselected package cpp. 1306s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 1306s Unpacking cpp (4:14.2.0-1ubuntu1) ... 1306s Selecting previously unselected package libcc1-0:amd64. 1306s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 1306s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 1306s Selecting previously unselected package libgomp1:amd64. 1306s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 1306s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 1306s Selecting previously unselected package libitm1:amd64. 1306s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 1306s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 1306s Selecting previously unselected package libasan8:amd64. 1306s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 1306s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 1307s Selecting previously unselected package liblsan0:amd64. 1307s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 1307s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 1307s Selecting previously unselected package libtsan2:amd64. 1307s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 1307s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 1307s Selecting previously unselected package libubsan1:amd64. 1307s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 1307s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 1307s Selecting previously unselected package libhwasan0:amd64. 1307s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 1307s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 1307s Selecting previously unselected package libquadmath0:amd64. 1307s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 1307s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 1307s Selecting previously unselected package libgcc-14-dev:amd64. 1307s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 1307s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 1307s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 1307s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 1307s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 1307s Selecting previously unselected package gcc-14. 1307s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 1307s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 1307s Selecting previously unselected package gcc-x86-64-linux-gnu. 1307s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 1307s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 1307s Selecting previously unselected package gcc. 1307s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 1307s Unpacking gcc (4:14.2.0-1ubuntu1) ... 1307s Selecting previously unselected package libstdc++-14-dev:amd64. 1307s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 1307s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 1307s Selecting previously unselected package g++-14-x86-64-linux-gnu. 1307s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 1307s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 1308s Selecting previously unselected package g++-14. 1308s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ... 1308s Unpacking g++-14 (14.2.0-17ubuntu3) ... 1308s Selecting previously unselected package g++-x86-64-linux-gnu. 1308s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 1308s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 1308s Selecting previously unselected package g++. 1308s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 1308s Unpacking g++ (4:14.2.0-1ubuntu1) ... 1308s Selecting previously unselected package build-essential. 1308s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 1308s Unpacking build-essential (12.10ubuntu1) ... 1308s Selecting previously unselected package dctrl-tools. 1308s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 1308s Unpacking dctrl-tools (2.24-3build3) ... 1308s Selecting previously unselected package fonts-dejavu-mono. 1308s Preparing to unpack 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.../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 1308s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 1308s Selecting previously unselected package fonts-glyphicons-halflings. 1308s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 1308s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 1308s Selecting previously unselected package fonts-lmodern. 1308s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ... 1308s Unpacking fonts-lmodern (2.005-1) ... 1308s Selecting previously unselected package fonts-mathjax. 1308s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 1308s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 1308s Selecting previously unselected package libgfortran5:amd64. 1308s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 1308s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 1308s Selecting previously unselected package libgfortran-14-dev:amd64. 1308s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 1308s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 1309s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 1309s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 1309s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 1309s Selecting previously unselected package gfortran-14. 1309s Preparing to unpack .../039-gfortran-14_14.2.0-17ubuntu3_amd64.deb ... 1309s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 1309s Selecting previously unselected package gfortran-x86-64-linux-gnu. 1309s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 1309s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 1309s Selecting previously unselected package gfortran. 1309s Preparing to unpack .../041-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 1309s Unpacking gfortran 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unselected package libblas3:amd64. 1309s Preparing to unpack .../047-libblas3_3.12.1-2_amd64.deb ... 1309s Unpacking libblas3:amd64 (3.12.1-2) ... 1309s Selecting previously unselected package libblas-dev:amd64. 1309s Preparing to unpack .../048-libblas-dev_3.12.1-2_amd64.deb ... 1309s Unpacking libblas-dev:amd64 (3.12.1-2) ... 1309s Selecting previously unselected package libboost1.83-dev:amd64. 1309s Preparing to unpack .../049-libboost1.83-dev_1.83.0-4.1ubuntu2_amd64.deb ... 1309s Unpacking libboost1.83-dev:amd64 (1.83.0-4.1ubuntu2) ... 1312s Selecting previously unselected package libboost-dev:amd64. 1312s Preparing to unpack .../050-libboost-dev_1.83.0.2ubuntu1_amd64.deb ... 1312s Unpacking libboost-dev:amd64 (1.83.0.2ubuntu1) ... 1312s Selecting previously unselected package libbz2-dev:amd64. 1312s Preparing to unpack .../051-libbz2-dev_1.0.8-6_amd64.deb ... 1312s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 1312s Selecting previously unselected package libpixman-1-0:amd64. 1312s 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1312s Unpacking libhnswlib-dev (0.8.0-1build3) ... 1312s Selecting previously unselected package x11-common. 1312s Preparing to unpack .../063-x11-common_1%3a7.7+23ubuntu3_all.deb ... 1312s Unpacking x11-common (1:7.7+23ubuntu3) ... 1312s Selecting previously unselected package libice6:amd64. 1312s Preparing to unpack .../064-libice6_2%3a1.1.1-1_amd64.deb ... 1312s Unpacking libice6:amd64 (2:1.1.1-1) ... 1312s Selecting previously unselected package libicu-dev:amd64. 1312s Preparing to unpack .../065-libicu-dev_76.1-1ubuntu2_amd64.deb ... 1312s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 1312s Selecting previously unselected package libjpeg-turbo8:amd64. 1312s Preparing to unpack .../066-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 1312s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 1312s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 1312s Preparing to unpack .../067-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ... 1312s Unpacking libjpeg-turbo8-dev:amd64 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libreadline-dev:amd64. 1314s Preparing to unpack .../109-libreadline-dev_8.2-6_amd64.deb ... 1314s Unpacking libreadline-dev:amd64 (8.2-6) ... 1314s Selecting previously unselected package libsharpyuv0:amd64. 1314s Preparing to unpack .../110-libsharpyuv0_1.5.0-0.1_amd64.deb ... 1314s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 1314s Selecting previously unselected package libsm6:amd64. 1314s Preparing to unpack .../111-libsm6_2%3a1.2.4-1_amd64.deb ... 1314s Unpacking libsm6:amd64 (2:1.2.4-1) ... 1314s Selecting previously unselected package libsynctex2:amd64. 1314s Preparing to unpack .../112-libsynctex2_2024.20240313.70630+ds-5build2_amd64.deb ... 1314s Unpacking libsynctex2:amd64 (2024.20240313.70630+ds-5build2) ... 1314s Selecting previously unselected package libtcl8.6:amd64. 1314s Preparing to unpack .../113-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 1314s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 1314s Selecting previously unselected package libteckit0:amd64. 1314s Preparing to unpack .../114-libteckit0_2.5.12+ds1-1_amd64.deb ... 1314s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 1314s Selecting previously unselected package libtexlua53-5:amd64. 1314s Preparing to unpack .../115-libtexlua53-5_2024.20240313.70630+ds-5build2_amd64.deb ... 1314s Unpacking libtexlua53-5:amd64 (2024.20240313.70630+ds-5build2) ... 1315s Selecting previously unselected package libjbig0:amd64. 1315s Preparing to unpack .../116-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 1315s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 1315s Selecting previously unselected package libwebp7:amd64. 1315s Preparing to unpack .../117-libwebp7_1.5.0-0.1_amd64.deb ... 1315s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 1315s Selecting previously unselected package libtiff6:amd64. 1315s Preparing to unpack .../118-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 1315s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 1315s Selecting previously unselected package libxft2:amd64. 1315s Preparing to unpack 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libxpm4:amd64 (1:3.5.17-1build2) ... 1315s Selecting previously unselected package libxaw7:amd64. 1315s Preparing to unpack .../125-libxaw7_2%3a1.0.16-1_amd64.deb ... 1315s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 1315s Selecting previously unselected package libxi6:amd64. 1315s Preparing to unpack .../126-libxi6_2%3a1.8.2-1_amd64.deb ... 1315s Unpacking libxi6:amd64 (2:1.8.2-1) ... 1315s Selecting previously unselected package libzzip-0-13t64:amd64. 1315s Preparing to unpack .../127-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 1315s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 1315s Selecting previously unselected package zip. 1315s Preparing to unpack .../128-zip_3.0-14ubuntu2_amd64.deb ... 1315s Unpacking zip (3.0-14ubuntu2) ... 1315s Selecting previously unselected package unzip. 1315s Preparing to unpack .../129-unzip_6.0-28ubuntu6_amd64.deb ... 1315s Unpacking unzip (6.0-28ubuntu6) ... 1315s Selecting previously unselected package xdg-utils. 1315s Preparing to unpack .../130-xdg-utils_1.2.1-2ubuntu1_all.deb ... 1315s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 1315s Selecting previously unselected package r-base-core. 1315s Preparing to unpack .../131-r-base-core_4.4.3-1_amd64.deb ... 1315s Unpacking r-base-core (4.4.3-1) ... 1315s Selecting previously unselected package r-cran-littler. 1315s Preparing to unpack .../132-r-cran-littler_0.3.20-2_amd64.deb ... 1315s Unpacking r-cran-littler (0.3.20-2) ... 1316s Selecting previously unselected package littler. 1316s Preparing to unpack .../133-littler_0.3.20-2_all.deb ... 1316s Unpacking littler (0.3.20-2) ... 1316s Selecting previously unselected package node-bootstrap-sass. 1316s Preparing to unpack .../134-node-bootstrap-sass_3.4.3-2_all.deb ... 1316s Unpacking node-bootstrap-sass (3.4.3-2) ... 1316s Selecting previously unselected package node-html5shiv. 1316s Preparing to unpack .../135-node-html5shiv_3.7.3+dfsg-5_all.deb ... 1316s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 1316s Selecting previously unselected package node-normalize.css. 1316s Preparing to unpack .../136-node-normalize.css_8.0.1-5_all.deb ... 1316s Unpacking node-normalize.css (8.0.1-5) ... 1316s Selecting previously unselected package pandoc-data. 1316s Preparing to unpack .../137-pandoc-data_3.1.11.1-3build1_all.deb ... 1316s Unpacking pandoc-data (3.1.11.1-3build1) ... 1316s Selecting previously unselected package pandoc. 1316s Preparing to unpack .../138-pandoc_3.1.11.1+ds-2_amd64.deb ... 1316s Unpacking pandoc (3.1.11.1+ds-2) ... 1316s Selecting previously unselected package liblzma-dev:amd64. 1316s Preparing to unpack .../139-liblzma-dev_5.6.4-1_amd64.deb ... 1316s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 1316s Selecting previously unselected package pkgconf-bin. 1316s Preparing to unpack .../140-pkgconf-bin_1.8.1-4_amd64.deb ... 1316s Unpacking pkgconf-bin (1.8.1-4) ... 1316s Selecting previously unselected package pkgconf:amd64. 1316s Preparing to unpack .../141-pkgconf_1.8.1-4_amd64.deb ... 1316s Unpacking pkgconf:amd64 (1.8.1-4) ... 1316s Selecting previously unselected package libtirpc-dev:amd64. 1316s Preparing to unpack .../142-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 1316s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 1317s Selecting previously unselected package r-base-dev. 1317s Preparing to unpack .../143-r-base-dev_4.4.3-1_all.deb ... 1317s Unpacking r-base-dev (4.4.3-1) ... 1317s Selecting previously unselected package pkg-r-autopkgtest. 1317s Preparing to unpack .../144-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 1317s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 1317s Selecting previously unselected package r-bioc-biocgenerics. 1317s Preparing to unpack .../145-r-bioc-biocgenerics_0.52.0-2_all.deb ... 1317s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 1317s Selecting previously unselected package r-bioc-assorthead. 1317s Preparing to unpack .../146-r-bioc-assorthead_1.0.1+ds-2_all.deb ... 1317s Unpacking r-bioc-assorthead (1.0.1+ds-2) ... 1317s Selecting previously unselected package r-cran-pkgkitten. 1317s Preparing to unpack .../147-r-cran-pkgkitten_0.2.4-1_all.deb ... 1317s Unpacking r-cran-pkgkitten (0.2.4-1) ... 1317s Selecting previously unselected package r-cran-rcpp. 1317s Preparing to unpack .../148-r-cran-rcpp_1.0.14-1_amd64.deb ... 1317s Unpacking r-cran-rcpp (1.0.14-1) ... 1317s Selecting previously unselected package r-bioc-biocneighbors. 1317s Preparing to unpack .../149-r-bioc-biocneighbors_2.0.1+ds-2_amd64.deb ... 1317s Unpacking r-bioc-biocneighbors (2.0.1+ds-2) ... 1317s Selecting previously unselected package r-cran-formatr. 1317s Preparing to unpack .../150-r-cran-formatr_1.14-2_all.deb ... 1317s Unpacking r-cran-formatr (1.14-2) ... 1317s Selecting previously unselected package r-cran-lambda.r. 1317s Preparing to unpack .../151-r-cran-lambda.r_1.2.4-2build1_all.deb ... 1317s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 1317s Selecting previously unselected package r-cran-futile.options. 1317s Preparing to unpack .../152-r-cran-futile.options_1.0.1-3build1_all.deb ... 1317s Unpacking r-cran-futile.options (1.0.1-3build1) ... 1317s Selecting previously unselected package r-cran-futile.logger. 1317s Preparing to unpack .../153-r-cran-futile.logger_1.4.3-4build1_all.deb ... 1317s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 1317s Selecting previously unselected package r-cran-snow. 1317s Preparing to unpack .../154-r-cran-snow_1%3a0.4.4-2_all.deb ... 1317s Unpacking r-cran-snow (1:0.4.4-2) ... 1317s Selecting previously unselected package r-cran-codetools. 1317s Preparing to unpack .../155-r-cran-codetools_0.2-20-1_all.deb ... 1317s Unpacking r-cran-codetools (0.2-20-1) ... 1317s Selecting previously unselected package r-cran-bh. 1317s Preparing to unpack .../156-r-cran-bh_1.84.0-1_all.deb ... 1317s Unpacking r-cran-bh (1.84.0-1) ... 1317s Selecting previously unselected package r-cran-cpp11. 1317s Preparing to unpack .../157-r-cran-cpp11_0.5.2-1_all.deb ... 1317s Unpacking r-cran-cpp11 (0.5.2-1) ... 1317s Selecting previously unselected package r-bioc-biocparallel. 1317s Preparing to unpack .../158-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 1317s Unpacking r-bioc-biocparallel (1.40.0-2) ... 1317s Selecting previously unselected package r-cran-base64enc. 1317s Preparing to unpack .../159-r-cran-base64enc_0.1-3-3_amd64.deb ... 1317s Unpacking r-cran-base64enc (0.1-3-3) ... 1317s Selecting previously unselected package r-cran-digest. 1317s Preparing to unpack .../160-r-cran-digest_0.6.37-1_amd64.deb ... 1317s Unpacking r-cran-digest (0.6.37-1) ... 1317s Selecting previously unselected package r-cran-fastmap. 1317s Preparing to unpack .../161-r-cran-fastmap_1.2.0-1_amd64.deb ... 1317s Unpacking r-cran-fastmap (1.2.0-1) ... 1317s Selecting previously unselected package r-cran-rlang. 1317s Preparing to unpack .../162-r-cran-rlang_1.1.5-1_amd64.deb ... 1317s Unpacking r-cran-rlang (1.1.5-1) ... 1317s Selecting previously unselected package r-cran-htmltools. 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unpack .../174-r-cran-glue_1.8.0-1_amd64.deb ... 1319s Unpacking r-cran-glue (1.8.0-1) ... 1319s Selecting previously unselected package r-cran-lifecycle. 1319s Preparing to unpack .../175-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 1319s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 1319s Selecting previously unselected package r-cran-memoise. 1319s Preparing to unpack .../176-r-cran-memoise_2.0.1-1_all.deb ... 1319s Unpacking r-cran-memoise (2.0.1-1) ... 1319s Selecting previously unselected package r-cran-mime. 1319s Preparing to unpack .../177-r-cran-mime_0.12-2_amd64.deb ... 1319s Unpacking r-cran-mime (0.12-2) ... 1319s Selecting previously unselected package r-cran-fs. 1319s Preparing to unpack .../178-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 1319s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 1319s Selecting previously unselected package r-cran-r6. 1319s Preparing to unpack .../179-r-cran-r6_2.6.1-1_all.deb ... 1319s Unpacking r-cran-r6 (2.6.1-1) ... 1319s Selecting previously unselected package r-cran-rappdirs. 1319s Preparing to unpack .../180-r-cran-rappdirs_0.3.3-1_amd64.deb ... 1319s Unpacking r-cran-rappdirs (0.3.3-1) ... 1319s Selecting previously unselected package r-cran-sass. 1319s Preparing to unpack .../181-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 1319s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 1319s Selecting previously unselected package r-cran-bslib. 1319s Preparing to unpack .../182-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 1319s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 1319s Selecting previously unselected package r-cran-fontawesome. 1319s Preparing to unpack .../183-r-cran-fontawesome_0.5.3-1_all.deb ... 1319s Unpacking r-cran-fontawesome (0.5.3-1) ... 1319s Selecting previously unselected package r-cran-tinytex. 1319s Preparing to unpack .../184-r-cran-tinytex_0.56-1_all.deb ... 1319s Unpacking r-cran-tinytex (0.56-1) ... 1319s Selecting previously unselected package libjs-modernizr. 1319s Preparing to unpack .../185-libjs-modernizr_3.13.0-0.1_all.deb ... 1319s Unpacking libjs-modernizr (3.13.0-0.1) ... 1319s Selecting previously unselected package r-cran-later. 1319s Preparing to unpack .../186-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 1319s Unpacking r-cran-later (1.4.1+dfsg-1) ... 1319s Selecting previously unselected package r-cran-magrittr. 1319s Preparing to unpack .../187-r-cran-magrittr_2.0.3-1_amd64.deb ... 1319s Unpacking r-cran-magrittr (2.0.3-1) ... 1319s Selecting previously unselected package r-cran-promises. 1319s Preparing to unpack .../188-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 1319s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 1319s Selecting previously unselected package r-cran-httpuv. 1319s Preparing to unpack .../189-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 1319s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 1319s Selecting previously unselected package r-cran-xtable. 1319s Preparing to unpack .../190-r-cran-xtable_1%3a1.8-4-2_all.deb ... 1319s Unpacking r-cran-xtable (1:1.8-4-2) ... 1319s Selecting previously unselected package r-cran-sourcetools. 1319s Preparing to unpack .../191-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 1319s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 1319s Selecting previously unselected package r-cran-crayon. 1319s Preparing to unpack .../192-r-cran-crayon_1.5.3-1_all.deb ... 1319s Unpacking r-cran-crayon (1.5.3-1) ... 1319s Selecting previously unselected package r-cran-withr. 1319s Preparing to unpack .../193-r-cran-withr_3.0.2+dfsg-1_all.deb ... 1319s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 1319s Selecting previously unselected package r-cran-commonmark. 1319s Preparing to unpack .../194-r-cran-commonmark_1.9.2-2_amd64.deb ... 1319s Unpacking r-cran-commonmark (1.9.2-2) ... 1319s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 1319s Preparing to unpack .../195-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 1319s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 1319s Selecting previously unselected package r-cran-shiny. 1319s Preparing to unpack .../196-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 1319s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 1320s Selecting previously unselected package r-cran-rmarkdown. 1320s Preparing to unpack .../197-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 1320s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 1320s Selecting previously unselected package r-cran-bookdown. 1320s Preparing to unpack .../198-r-cran-bookdown_0.42+dfsg-1_all.deb ... 1320s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 1320s Selecting previously unselected package r-cran-biocmanager. 1320s Preparing to unpack .../199-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 1320s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 1320s Selecting previously unselected package tex-common. 1320s Preparing to unpack .../200-tex-common_6.19_all.deb ... 1320s Unpacking tex-common (6.19) ... 1320s Selecting previously unselected package t1utils. 1320s Preparing to unpack .../201-t1utils_1.41-4build3_amd64.deb 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This may take some time... done. 1331s Running mktexlsr /var/lib/texmf ... done. 1331s Building format(s) --all. 1356s This may take some time... done. 1357s autopkgtest [18:08:02]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 1357s autopkgtest [18:08:02]: test pkg-r-autopkgtest: [----------------------- 1357s Test: Try to load the R library BiocNeighbors 1357s 1357s R version 4.4.3 (2025-02-28) -- "Trophy Case" 1357s Copyright (C) 2025 The R Foundation for Statistical Computing 1357s Platform: x86_64-pc-linux-gnu 1357s 1357s R is free software and comes with ABSOLUTELY NO WARRANTY. 1357s You are welcome to redistribute it under certain conditions. 1357s Type 'license()' or 'licence()' for distribution details. 1357s 1357s R is a collaborative project with many contributors. 1357s Type 'contributors()' for more information and 1357s 'citation()' on how to cite R or R packages in publications. 1357s 1357s Type 'demo()' for some demos, 'help()' for on-line help, or 1357s 'help.start()' for an HTML browser interface to help. 1357s Type 'q()' to quit R. 1357s 1357s > library('BiocNeighbors') 1358s > 1358s > 1358s Other tests are currently unsupported! 1358s They will be progressively added. 1358s autopkgtest [18:08:03]: test pkg-r-autopkgtest: -----------------------] 1358s autopkgtest [18:08:03]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 1358s pkg-r-autopkgtest PASS 1359s autopkgtest [18:08:04]: @@@@@@@@@@@@@@@@@@@@ summary 1359s pkg-r-autopkgtest PASS 1363s nova [W] Skipping flock for amd64 1363s Creating nova instance adt-plucky-amd64-r-bioc-biocneighbors-20250315-170417-juju-7f2275-prod-proposed-migration-environment-20-c4f50fb1-b4c5-4157-8677-0e2b40d8b658 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 1363s nova [W] Timed out waiting for f42a1663-9893-4851-bba0-552940b29ab6 to get deleted.