0s autopkgtest [21:56:48]: starting date and time: 2025-03-15 21:56:48+0000 0s autopkgtest [21:56:48]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [21:56:48]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.hrg6kexr/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-biobase --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-2.secgroup --name adt-plucky-amd64-r-bioc-biobase-20250315-215648-juju-7f2275-prod-proposed-migration-environment-15-ef99a4a2-22a6-4003-82de-373f338ae610 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 45s autopkgtest [21:57:33]: testbed dpkg architecture: amd64 45s autopkgtest [21:57:33]: testbed apt version: 2.9.31ubuntu1 45s autopkgtest [21:57:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 45s autopkgtest [21:57:33]: testbed release detected to be: None 46s autopkgtest [21:57:34]: updating testbed package index (apt update) 47s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 47s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 47s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 47s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 47s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 47s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 47s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 47s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 47s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 47s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 47s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 47s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 47s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 47s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 47s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 47s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 47s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 48s Fetched 1265 kB in 1s (1451 kB/s) 49s Reading package lists... 49s + lsb_release --codename --short 49s + RELEASE=plucky 49s + cat 49s + [ plucky != trusty ] 49s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 49s Reading package lists... 49s Building dependency tree... 49s Reading state information... 50s Calculating upgrade... 50s Calculating upgrade... 50s The following package was automatically installed and is no longer required: 50s libnl-genl-3-200 50s Use 'sudo apt autoremove' to remove it. 50s The following NEW packages will be installed: 50s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 50s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 50s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 50s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 50s The following packages will be upgraded: 50s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 50s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 50s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 50s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 50s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 50s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 50s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 50s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 50s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 50s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 50s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 50s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 50s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 50s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 50s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 50s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 50s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 50s parted pci.ids pciutils pinentry-curses python-apt-common python3 50s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 50s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 50s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 50s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 50s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 50s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 50s xz-utils 50s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 50s Need to get 829 MB of archives. 50s After this operation, 325 MB of additional disk space will be used. 50s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 51s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 51s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 51s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 51s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 51s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 51s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 51s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 51s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 51s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 51s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 51s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 51s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 51s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 51s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 51s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 51s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 51s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 51s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 51s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 52s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 52s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 52s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 52s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 52s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 52s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 52s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 52s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 52s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 52s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 52s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 52s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 52s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 52s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 52s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 52s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 52s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 52s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 52s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 52s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 52s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 52s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 52s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 52s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 52s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 52s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 52s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 52s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 52s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 52s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 52s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 52s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 52s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 52s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 52s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 52s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 53s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 53s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 53s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 53s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 53s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 53s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 53s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 53s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 53s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 53s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 53s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 53s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 53s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 53s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 53s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 53s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 53s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 53s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 53s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 53s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 53s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 53s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 53s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 53s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 53s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 53s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 53s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 53s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 53s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 53s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 53s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 53s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 53s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 53s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 53s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 53s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 53s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 53s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 53s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 53s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 53s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 53s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 53s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 53s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 53s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 53s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 54s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 54s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 54s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 54s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 54s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 54s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 54s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 77s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 77s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 77s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 77s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 77s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 77s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 77s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 77s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 78s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 79s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 83s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 83s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 83s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 83s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 83s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 83s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 84s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 84s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 84s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 84s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 84s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 84s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 84s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 84s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 84s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 84s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 84s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 84s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 84s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 85s Preconfiguring packages ... 85s Fetched 829 MB in 34s (24.2 MB/s) 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109140 files and directories currently installed.) 85s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ... 85s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ... 85s Setting up ncurses-bin (6.5+20250216-2) ... 86s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109140 files and directories currently installed.) 86s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu1_amd64.deb ... 86s Unpacking libc-dev-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 86s Preparing to unpack .../libc6-dev_2.41-1ubuntu1_amd64.deb ... 86s Unpacking libc6-dev:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 86s Preparing to unpack .../locales_2.41-1ubuntu1_all.deb ... 86s Unpacking locales (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 86s Preparing to unpack .../libc6_2.41-1ubuntu1_amd64.deb ... 86s Checking for services that may need to be restarted... 86s Checking init scripts... 86s Checking for services that may need to be restarted... 86s Checking init scripts... 86s Stopping some services possibly affected by the upgrade (will be restarted later): 86s cron: stopping...done. 86s 87s Unpacking libc6:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 87s Setting up libc6:amd64 (2.41-1ubuntu1) ... 87s Checking for services that may need to be restarted... 87s Checking init scripts... 87s Restarting services possibly affected by the upgrade: 87s cron: restarting...done. 87s 87s Services restarted successfully. 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109141 files and directories currently installed.) 87s Preparing to unpack .../libc-bin_2.41-1ubuntu1_amd64.deb ... 87s Unpacking libc-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 87s Setting up libc-bin (2.41-1ubuntu1) ... 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109141 files and directories currently installed.) 87s Preparing to unpack .../linux-libc-dev_6.14.0-10.10_amd64.deb ... 87s Unpacking linux-libc-dev:amd64 (6.14.0-10.10) over (6.12.0-16.16) ... 88s Preparing to unpack .../libatomic1_15-20250222-0ubuntu1_amd64.deb ... 88s Unpacking libatomic1:amd64 (15-20250222-0ubuntu1) over (15-20250213-1ubuntu1) ... 88s Preparing to unpack .../gcc-15-base_15-20250222-0ubuntu1_amd64.deb ... 88s Unpacking gcc-15-base:amd64 (15-20250222-0ubuntu1) over (15-20250213-1ubuntu1) ... 88s Setting up gcc-15-base:amd64 (15-20250222-0ubuntu1) ... 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 88s Preparing to unpack .../libgcc-s1_15-20250222-0ubuntu1_amd64.deb ... 88s Unpacking libgcc-s1:amd64 (15-20250222-0ubuntu1) over (15-20250213-1ubuntu1) ... 88s Setting up libgcc-s1:amd64 (15-20250222-0ubuntu1) ... 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 88s Preparing to unpack .../libstdc++6_15-20250222-0ubuntu1_amd64.deb ... 88s Unpacking libstdc++6:amd64 (15-20250222-0ubuntu1) over (15-20250213-1ubuntu1) ... 88s Setting up libstdc++6:amd64 (15-20250222-0ubuntu1) ... 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 88s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... 88s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ... 88s Setting up ncurses-base (6.5+20250216-2) ... 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 88s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ... 88s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ... 89s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ... 89s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ... 89s Setting up liblz4-1:amd64 (1.10.0-4) ... 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 89s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ... 89s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ... 89s Setting up liblzma5:amd64 (5.6.4-1) ... 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 89s Preparing to unpack .../libsystemd0_257.3-1ubuntu3_amd64.deb ... 89s Unpacking libsystemd0:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 89s Setting up libsystemd0:amd64 (257.3-1ubuntu3) ... 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 89s Preparing to unpack .../libnss-systemd_257.3-1ubuntu3_amd64.deb ... 89s Unpacking libnss-systemd:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 90s Preparing to unpack .../systemd-sysv_257.3-1ubuntu3_amd64.deb ... 90s Unpacking systemd-sysv (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 90s Preparing to unpack .../systemd-resolved_257.3-1ubuntu3_amd64.deb ... 90s Unpacking systemd-resolved (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 90s Preparing to unpack .../libpam-systemd_257.3-1ubuntu3_amd64.deb ... 90s Unpacking libpam-systemd:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 90s Preparing to unpack .../libsystemd-shared_257.3-1ubuntu3_amd64.deb ... 90s Unpacking libsystemd-shared:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 90s Setting up libsystemd-shared:amd64 (257.3-1ubuntu3) ... 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 90s Preparing to unpack .../systemd_257.3-1ubuntu3_amd64.deb ... 90s Unpacking systemd (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 90s Preparing to unpack .../systemd-timesyncd_257.3-1ubuntu3_amd64.deb ... 90s Unpacking systemd-timesyncd (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 90s Preparing to unpack .../systemd-cryptsetup_257.3-1ubuntu3_amd64.deb ... 90s Unpacking systemd-cryptsetup (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 90s Preparing to unpack .../udev_257.3-1ubuntu3_amd64.deb ... 90s Unpacking udev (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 91s Preparing to unpack .../libudev1_257.3-1ubuntu3_amd64.deb ... 91s Unpacking libudev1:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 91s Setting up libudev1:amd64 (257.3-1ubuntu3) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 91s Preparing to unpack .../libaudit-common_1%3a4.0.2-2ubuntu2_all.deb ... 91s Unpacking libaudit-common (1:4.0.2-2ubuntu2) over (1:4.0.2-2ubuntu1) ... 91s Setting up libaudit-common (1:4.0.2-2ubuntu2) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 91s Preparing to unpack .../libcap-ng0_0.8.5-4build1_amd64.deb ... 91s Unpacking libcap-ng0:amd64 (0.8.5-4build1) over (0.8.5-4) ... 91s Setting up libcap-ng0:amd64 (0.8.5-4build1) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 91s Preparing to unpack .../libaudit1_1%3a4.0.2-2ubuntu2_amd64.deb ... 91s Unpacking libaudit1:amd64 (1:4.0.2-2ubuntu2) over (1:4.0.2-2ubuntu1) ... 91s Setting up libaudit1:amd64 (1:4.0.2-2ubuntu2) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 91s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu6_amd64.deb ... 91s Unpacking libseccomp2:amd64 (2.5.5-1ubuntu6) over (2.5.5-1ubuntu5) ... 91s Setting up libseccomp2:amd64 (2.5.5-1ubuntu6) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 91s Preparing to unpack .../libselinux1_3.7-3ubuntu3_amd64.deb ... 91s Unpacking libselinux1:amd64 (3.7-3ubuntu3) over (3.7-3ubuntu2) ... 91s Setting up libselinux1:amd64 (3.7-3ubuntu3) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 91s Preparing to unpack .../libapparmor1_4.1.0~beta5-0ubuntu8_amd64.deb ... 91s Unpacking libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) over (4.1.0~beta5-0ubuntu5) ... 91s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 91s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 91s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 91s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 91s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 92s Setting up apt (2.9.33) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 93s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 93s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 93s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 93s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 93s Setting up python3-minimal (3.13.2-2) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 93s Preparing to unpack .../0-python3_3.13.2-2_amd64.deb ... 93s Unpacking python3 (3.13.2-2) over (3.13.2-1) ... 93s Preparing to unpack .../1-libpython3.13_3.13.2-2_amd64.deb ... 93s Unpacking libpython3.13:amd64 (3.13.2-2) over (3.13.2-1) ... 93s Preparing to unpack .../2-media-types_13.0.0_all.deb ... 93s Unpacking media-types (13.0.0) over (12.0.0) ... 93s Preparing to unpack .../3-libncurses6_6.5+20250216-2_amd64.deb ... 93s Unpacking libncurses6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 93s Preparing to unpack .../4-libncursesw6_6.5+20250216-2_amd64.deb ... 93s Unpacking libncursesw6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 93s Preparing to unpack .../5-libtinfo6_6.5+20250216-2_amd64.deb ... 93s Unpacking libtinfo6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 93s Setting up libtinfo6:amd64 (6.5+20250216-2) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 93s Preparing to unpack .../0-libsqlite3-0_3.46.1-2_amd64.deb ... 93s Unpacking libsqlite3-0:amd64 (3.46.1-2) over (3.46.1-1) ... 93s Preparing to unpack .../1-python3.13_3.13.2-2_amd64.deb ... 94s Unpacking python3.13 (3.13.2-2) over (3.13.2-1) ... 94s Preparing to unpack .../2-python3.13-minimal_3.13.2-2_amd64.deb ... 94s Unpacking python3.13-minimal (3.13.2-2) over (3.13.2-1) ... 94s Preparing to unpack .../3-libpython3.13-minimal_3.13.2-2_amd64.deb ... 94s Unpacking libpython3.13-minimal:amd64 (3.13.2-2) over (3.13.2-1) ... 94s Preparing to unpack .../4-libpython3.13-stdlib_3.13.2-2_amd64.deb ... 94s Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 94s Preparing to unpack .../5-libpython3-stdlib_3.13.2-2_amd64.deb ... 94s Unpacking libpython3-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 94s Preparing to unpack .../6-rsync_3.4.1+ds1-3_amd64.deb ... 94s Unpacking rsync (3.4.1+ds1-3) over (3.4.1-0syncable1) ... 94s Selecting previously unselected package libdebuginfod-common. 94s Preparing to unpack .../7-libdebuginfod-common_0.192-4_all.deb ... 94s Unpacking libdebuginfod-common (0.192-4) ... 94s Preparing to unpack .../8-libsemanage-common_3.7-2.1build1_all.deb ... 94s Unpacking libsemanage-common (3.7-2.1build1) over (3.7-2.1) ... 94s Setting up libsemanage-common (3.7-2.1build1) ... 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109155 files and directories currently installed.) 94s Preparing to unpack .../libsemanage2_3.7-2.1build1_amd64.deb ... 94s Unpacking libsemanage2:amd64 (3.7-2.1build1) over (3.7-2.1) ... 94s Setting up libsemanage2:amd64 (3.7-2.1build1) ... 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109155 files and directories currently installed.) 95s Preparing to unpack .../libassuan9_3.0.2-2_amd64.deb ... 95s Unpacking libassuan9:amd64 (3.0.2-2) over (3.0.1-2) ... 95s Setting up libassuan9:amd64 (3.0.2-2) ... 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109155 files and directories currently installed.) 95s Preparing to unpack .../00-gir1.2-girepository-2.0_1.83.4-1_amd64.deb ... 95s Unpacking gir1.2-girepository-2.0:amd64 (1.83.4-1) over (1.82.0-4) ... 95s Preparing to unpack .../01-gir1.2-glib-2.0_2.84.0-1_amd64.deb ... 95s Unpacking gir1.2-glib-2.0:amd64 (2.84.0-1) over (2.83.5-1) ... 95s Preparing to unpack .../02-libglib2.0-0t64_2.84.0-1_amd64.deb ... 95s Unpacking libglib2.0-0t64:amd64 (2.84.0-1) over (2.83.5-1) ... 95s Preparing to unpack .../03-libgirepository-1.0-1_1.83.4-1_amd64.deb ... 95s Unpacking libgirepository-1.0-1:amd64 (1.83.4-1) over (1.82.0-4) ... 95s Preparing to unpack .../04-libestr0_0.1.11-2_amd64.deb ... 95s Unpacking libestr0:amd64 (0.1.11-2) over (0.1.11-1build1) ... 95s Preparing to unpack .../05-libglib2.0-data_2.84.0-1_all.deb ... 95s Unpacking libglib2.0-data (2.84.0-1) over (2.83.5-1) ... 95s Preparing to unpack .../06-python3-newt_0.52.24-4ubuntu2_amd64.deb ... 95s Unpacking python3-newt:amd64 (0.52.24-4ubuntu2) over (0.52.24-4ubuntu1) ... 95s Preparing to unpack .../07-libnewt0.52_0.52.24-4ubuntu2_amd64.deb ... 95s Unpacking libnewt0.52:amd64 (0.52.24-4ubuntu2) over (0.52.24-4ubuntu1) ... 95s Preparing to unpack .../08-libxml2_2.12.7+dfsg+really2.9.14-0.2ubuntu5_amd64.deb ... 95s Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) over (2.12.7+dfsg+really2.9.14-0.2ubuntu4) ... 95s Preparing to unpack .../09-python-apt-common_2.9.9build1_all.deb ... 95s Unpacking python-apt-common (2.9.9build1) over (2.9.9) ... 96s Preparing to unpack .../10-python3-apt_2.9.9build1_amd64.deb ... 96s Unpacking python3-apt (2.9.9build1) over (2.9.9) ... 96s Preparing to unpack .../11-python3-cffi-backend_1.17.1-2build2_amd64.deb ... 96s Unpacking python3-cffi-backend:amd64 (1.17.1-2build2) over (1.17.1-2build1) ... 96s Preparing to unpack .../12-python3-dbus_1.3.2-5build5_amd64.deb ... 96s Unpacking python3-dbus (1.3.2-5build5) over (1.3.2-5build4) ... 96s Preparing to unpack .../13-python3-gi_3.50.0-4build1_amd64.deb ... 96s Unpacking python3-gi (3.50.0-4build1) over (3.50.0-4) ... 96s Preparing to unpack .../14-python3-yaml_6.0.2-1build2_amd64.deb ... 96s Unpacking python3-yaml (6.0.2-1build2) over (6.0.2-1build1) ... 96s Preparing to unpack .../15-rsyslog_8.2412.0-2ubuntu2_amd64.deb ... 96s Unpacking rsyslog (8.2412.0-2ubuntu2) over (8.2412.0-2ubuntu1) ... 96s Preparing to unpack .../16-whiptail_0.52.24-4ubuntu2_amd64.deb ... 96s Unpacking whiptail (0.52.24-4ubuntu2) over (0.52.24-4ubuntu1) ... 96s Preparing to unpack .../17-ubuntu-minimal_1.549_amd64.deb ... 96s Unpacking ubuntu-minimal (1.549) over (1.548) ... 96s Preparing to unpack .../18-apparmor_4.1.0~beta5-0ubuntu8_amd64.deb ... 97s Unpacking apparmor (4.1.0~beta5-0ubuntu8) over (4.1.0~beta5-0ubuntu5) ... 98s Preparing to unpack .../19-dosfstools_4.2-1.2_amd64.deb ... 98s Unpacking dosfstools (4.2-1.2) over (4.2-1.1build1) ... 98s Preparing to unpack .../20-libnl-genl-3-200_3.7.0-1_amd64.deb ... 98s Unpacking libnl-genl-3-200:amd64 (3.7.0-1) over (3.7.0-0.3build2) ... 98s Preparing to unpack .../21-libnl-route-3-200_3.7.0-1_amd64.deb ... 98s Unpacking libnl-route-3-200:amd64 (3.7.0-1) over (3.7.0-0.3build2) ... 98s Preparing to unpack .../22-libnl-3-200_3.7.0-1_amd64.deb ... 98s Unpacking libnl-3-200:amd64 (3.7.0-1) over (3.7.0-0.3build2) ... 98s Preparing to unpack .../23-parted_3.6-5_amd64.deb ... 98s Unpacking parted (3.6-5) over (3.6-4build1) ... 98s Preparing to unpack .../24-libparted2t64_3.6-5_amd64.deb ... 98s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 98s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 98s Unpacking libparted2t64:amd64 (3.6-5) over (3.6-4build1) ... 98s Preparing to unpack .../25-pci.ids_0.0~2025.03.09-1_all.deb ... 98s Unpacking pci.ids (0.0~2025.03.09-1) over (0.0~2025.02.12-1) ... 98s Preparing to unpack .../26-pciutils_1%3a3.13.0-2_amd64.deb ... 98s Unpacking pciutils (1:3.13.0-2) over (1:3.13.0-1) ... 98s Preparing to unpack .../27-libpci3_1%3a3.13.0-2_amd64.deb ... 98s Unpacking libpci3:amd64 (1:3.13.0-2) over (1:3.13.0-1) ... 98s Preparing to unpack .../28-strace_6.13+ds-1ubuntu1_amd64.deb ... 98s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 98s Preparing to unpack .../29-xz-utils_5.6.4-1_amd64.deb ... 98s Unpacking xz-utils (5.6.4-1) over (5.6.3-1) ... 98s Preparing to unpack .../30-ubuntu-standard_1.549_amd64.deb ... 98s Unpacking ubuntu-standard (1.549) over (1.548) ... 98s Preparing to unpack .../31-libgprofng0_2.44-3ubuntu1_amd64.deb ... 98s Unpacking libgprofng0:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 98s Preparing to unpack .../32-libctf0_2.44-3ubuntu1_amd64.deb ... 98s Unpacking libctf0:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 98s Preparing to unpack .../33-libctf-nobfd0_2.44-3ubuntu1_amd64.deb ... 98s Unpacking libctf-nobfd0:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 98s Preparing to unpack .../34-binutils-x86-64-linux-gnu_2.44-3ubuntu1_amd64.deb ... 98s Unpacking binutils-x86-64-linux-gnu (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 99s Preparing to unpack .../35-libbinutils_2.44-3ubuntu1_amd64.deb ... 99s Unpacking libbinutils:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 99s Preparing to unpack .../36-binutils_2.44-3ubuntu1_amd64.deb ... 99s Unpacking binutils (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 99s Preparing to unpack .../37-binutils-common_2.44-3ubuntu1_amd64.deb ... 99s Unpacking binutils-common:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 99s Preparing to unpack .../38-libsframe1_2.44-3ubuntu1_amd64.deb ... 99s Unpacking libsframe1:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 99s Preparing to unpack .../39-hwdata_0.393-3_all.deb ... 99s Unpacking hwdata (0.393-3) over (0.392-1) ... 99s Selecting previously unselected package pnp.ids. 99s Preparing to unpack .../40-pnp.ids_0.393-3_all.deb ... 99s Unpacking pnp.ids (0.393-3) ... 99s Preparing to unpack .../41-linux-tools-common_6.14.0-10.10_all.deb ... 99s Unpacking linux-tools-common (6.14.0-10.10) over (6.12.0-16.16) ... 99s Selecting previously unselected package bpftool. 99s Preparing to unpack .../42-bpftool_7.6.0+6.14.0-10.10_amd64.deb ... 99s Unpacking bpftool (7.6.0+6.14.0-10.10) ... 99s Preparing to unpack .../43-python3-markupsafe_2.1.5-1build4_amd64.deb ... 99s Unpacking python3-markupsafe (2.1.5-1build4) over (2.1.5-1build3) ... 99s Preparing to unpack .../44-python3-jinja2_3.1.5-2ubuntu1_all.deb ... 99s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 99s Preparing to unpack .../45-cloud-init-base_25.1-0ubuntu3_all.deb ... 100s Unpacking cloud-init-base (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 100s Preparing to unpack .../46-libbrotli1_1.1.0-2build4_amd64.deb ... 100s Unpacking libbrotli1:amd64 (1.1.0-2build4) over (1.1.0-2build3) ... 100s Preparing to unpack .../47-curl_8.12.1-3ubuntu1_amd64.deb ... 100s Unpacking curl (8.12.1-3ubuntu1) over (8.12.1-2ubuntu1) ... 100s Preparing to unpack .../48-libcurl4t64_8.12.1-3ubuntu1_amd64.deb ... 100s Unpacking libcurl4t64:amd64 (8.12.1-3ubuntu1) over (8.12.1-2ubuntu1) ... 100s Preparing to unpack .../49-exfatprogs_1.2.8-1_amd64.deb ... 100s Unpacking exfatprogs (1.2.8-1) over (1.2.7-3) ... 100s Preparing to unpack .../50-libcurl3t64-gnutls_8.12.1-3ubuntu1_amd64.deb ... 100s Unpacking libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) over (8.12.1-2ubuntu1) ... 100s Preparing to unpack .../51-fwupd_2.0.6-4_amd64.deb ... 100s Unpacking fwupd (2.0.6-4) over (2.0.6-3) ... 100s Preparing to unpack .../52-libfwupd3_2.0.6-4_amd64.deb ... 100s Unpacking libfwupd3:amd64 (2.0.6-4) over (2.0.6-3) ... 100s Preparing to unpack .../53-libmm-glib0_1.23.4-0ubuntu3_amd64.deb ... 100s Unpacking libmm-glib0:amd64 (1.23.4-0ubuntu3) over (1.23.4-0ubuntu2) ... 100s Preparing to unpack .../54-htop_3.4.0-2_amd64.deb ... 100s Unpacking htop (3.4.0-2) over (3.3.0-5) ... 101s Preparing to unpack .../55-linux-firmware_20250310.git9e1370d3-0ubuntu1_amd64.deb ... 101s Unpacking linux-firmware (20250310.git9e1370d3-0ubuntu1) over (20250204.git0fd450ee-0ubuntu1) ... 104s Preparing to unpack .../56-initramfs-tools_0.146ubuntu1_all.deb ... 104s Unpacking initramfs-tools (0.146ubuntu1) over (0.145ubuntu3) ... 104s Preparing to unpack .../57-initramfs-tools-core_0.146ubuntu1_all.deb ... 104s Unpacking initramfs-tools-core (0.146ubuntu1) over (0.145ubuntu3) ... 104s Preparing to unpack .../58-initramfs-tools-bin_0.146ubuntu1_amd64.deb ... 104s Unpacking initramfs-tools-bin (0.146ubuntu1) over (0.145ubuntu3) ... 104s Selecting previously unselected package libdebuginfod1t64:amd64. 104s Preparing to unpack .../59-libdebuginfod1t64_0.192-4_amd64.deb ... 104s Unpacking libdebuginfod1t64:amd64 (0.192-4) ... 104s Preparing to unpack .../60-libftdi1-2_1.5-8build1_amd64.deb ... 104s Unpacking libftdi1-2:amd64 (1.5-8build1) over (1.5-8) ... 104s Preparing to unpack .../61-libgpgme11t64_1.24.2-1ubuntu2_amd64.deb ... 104s Unpacking libgpgme11t64:amd64 (1.24.2-1ubuntu2) over (1.24.2-1ubuntu1) ... 104s Preparing to unpack .../62-libjemalloc2_5.3.0-3_amd64.deb ... 104s Unpacking libjemalloc2:amd64 (5.3.0-3) over (5.3.0-2build1) ... 104s Selecting previously unselected package linux-modules-6.14.0-10-generic. 104s Preparing to unpack .../63-linux-modules-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 104s Unpacking linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 105s Selecting previously unselected package linux-image-6.14.0-10-generic. 105s Preparing to unpack .../64-linux-image-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 105s Unpacking linux-image-6.14.0-10-generic (6.14.0-10.10) ... 105s Selecting previously unselected package linux-modules-extra-6.14.0-10-generic. 105s Preparing to unpack .../65-linux-modules-extra-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 105s Unpacking linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 106s Preparing to unpack .../66-linux-generic_6.14.0-10.10_amd64.deb ... 106s Unpacking linux-generic (6.14.0-10.10) over (6.12.0-16.16+2) ... 106s Preparing to unpack .../67-linux-image-generic_6.14.0-10.10_amd64.deb ... 106s Unpacking linux-image-generic (6.14.0-10.10) over (6.12.0-16.16+2) ... 107s Preparing to unpack .../68-linux-virtual_6.14.0-10.10_amd64.deb ... 107s Unpacking linux-virtual (6.14.0-10.10) over (6.12.0-16.16+2) ... 107s Preparing to unpack .../69-linux-image-virtual_6.14.0-10.10_amd64.deb ... 107s Unpacking linux-image-virtual (6.14.0-10.10) over (6.12.0-16.16+2) ... 107s Preparing to unpack .../70-linux-headers-virtual_6.14.0-10.10_amd64.deb ... 107s Unpacking linux-headers-virtual (6.14.0-10.10) over (6.12.0-16.16+2) ... 107s Selecting previously unselected package linux-headers-6.14.0-10. 107s Preparing to unpack .../71-linux-headers-6.14.0-10_6.14.0-10.10_all.deb ... 107s Unpacking linux-headers-6.14.0-10 (6.14.0-10.10) ... 109s Selecting previously unselected package linux-headers-6.14.0-10-generic. 109s Preparing to unpack .../72-linux-headers-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 109s Unpacking linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 111s Preparing to unpack .../73-linux-headers-generic_6.14.0-10.10_amd64.deb ... 111s Unpacking linux-headers-generic (6.14.0-10.10) over (6.12.0-16.16+2) ... 111s Selecting previously unselected package linux-perf. 111s Preparing to unpack .../74-linux-perf_6.14.0-10.10_amd64.deb ... 111s Unpacking linux-perf (6.14.0-10.10) ... 111s Selecting previously unselected package linux-tools-6.14.0-10. 111s Preparing to unpack .../75-linux-tools-6.14.0-10_6.14.0-10.10_amd64.deb ... 111s Unpacking linux-tools-6.14.0-10 (6.14.0-10.10) ... 111s Selecting previously unselected package linux-tools-6.14.0-10-generic. 111s Preparing to unpack .../76-linux-tools-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 111s Unpacking linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 111s Preparing to unpack .../77-pinentry-curses_1.3.1-2ubuntu3_amd64.deb ... 111s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 111s Preparing to unpack .../78-python3-lazr.uri_1.0.6-6_all.deb ... 111s Unpacking python3-lazr.uri (1.0.6-6) over (1.0.6-5) ... 112s Preparing to unpack .../79-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ... 112s Unpacking python3-rpds-py (0.21.0-2ubuntu2) over (0.21.0-2ubuntu1) ... 112s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 112s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 112s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 112s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 112s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 112s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 112s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 112s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 112s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 112s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 112s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 112s Setting up media-types (13.0.0) ... 112s Installing new version of config file /etc/mime.types ... 112s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 112s Setting up ubuntu-kernel-accessories (1.549) ... 112s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 112s Setting up pci.ids (0.0~2025.03.09-1) ... 112s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 112s Setting up apt-utils (2.9.33) ... 112s Setting up libdebuginfod-common (0.192-4) ... 112s Setting up exfatprogs (1.2.8-1) ... 112s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 112s Setting up bpftool (7.6.0+6.14.0-10.10) ... 112s Setting up libestr0:amd64 (0.1.11-2) ... 112s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 112s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 112s Setting up dosfstools (4.2-1.2) ... 112s Setting up rsyslog (8.2412.0-2ubuntu2) ... 112s info: The user `syslog' is already a member of `adm'. 114s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 114s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 114s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 114s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 114s Setting up systemd (257.3-1ubuntu3) ... 114s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 114s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 114s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 115s Setting up libparted2t64:amd64 (3.6-5) ... 115s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 115s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 115s Setting up linux-headers-generic (6.14.0-10.10) ... 115s Setting up libjemalloc2:amd64 (5.3.0-3) ... 115s Setting up locales (2.41-1ubuntu1) ... 115s Installing new version of config file /etc/locale.alias ... 115s Generating locales (this might take a while)... 117s en_US.UTF-8... done 117s Generation complete. 117s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 117s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 117s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 117s Installing new version of config file /etc/apparmor.d/fusermount3 ... 117s Installing new version of config file /etc/apparmor.d/lsusb ... 117s Installing new version of config file /etc/apparmor.d/openvpn ... 118s Reloading AppArmor profiles 119s Setting up libftdi1-2:amd64 (1.5-8build1) ... 119s Setting up libglib2.0-data (2.84.0-1) ... 119s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 119s Setting up libncurses6:amd64 (6.5+20250216-2) ... 119s Setting up strace (6.13+ds-1ubuntu1) ... 119s Setting up xz-utils (5.6.4-1) ... 119s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 120s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 120s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 120s Setting up udev (257.3-1ubuntu3) ... 121s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 123s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 123s Setting up libpci3:amd64 (1:3.13.0-2) ... 123s Setting up whiptail (0.52.24-4ubuntu2) ... 123s Setting up python-apt-common (2.9.9build1) ... 123s Setting up pnp.ids (0.393-3) ... 123s Setting up libnl-3-200:amd64 (3.7.0-1) ... 123s Setting up python3.13-minimal (3.13.2-2) ... 124s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 124s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 124s Setting up libc-dev-bin (2.41-1ubuntu1) ... 124s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 124s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 124s Setting up rsync (3.4.1+ds1-3) ... 125s rsync.service is a disabled or a static unit not running, not starting it. 125s Setting up python3.13-gdbm (3.13.2-2) ... 125s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 125s Setting up systemd-resolved (257.3-1ubuntu3) ... 125s Setting up initramfs-tools-bin (0.146ubuntu1) ... 125s Setting up ncurses-term (6.5+20250216-2) ... 125s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 125s Setting up libpython3.13:amd64 (3.13.2-2) ... 125s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 125s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 125s Setting up systemd-sysv (257.3-1ubuntu3) ... 125s Setting up linux-headers-virtual (6.14.0-10.10) ... 125s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 125s Setting up python3.13 (3.13.2-2) ... 126s Setting up htop (3.4.0-2) ... 126s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 128s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 128s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 128s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 128s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 128s Setting up parted (3.6-5) ... 128s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 128s Setting up python3 (3.13.2-2) ... 128s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 129s Setting up python3-markupsafe (2.1.5-1build4) ... 129s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 131s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 131s Setting up hwdata (0.393-3) ... 131s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 131s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 131s No schema files found: doing nothing. 131s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 131s Setting up linux-perf (6.14.0-10.10) ... 131s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 131s Setting up pciutils (1:3.13.0-2) ... 131s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 131s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 131s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 131s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 131s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 131s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 131s Setting up curl (8.12.1-3ubuntu1) ... 131s Setting up linux-image-virtual (6.14.0-10.10) ... 131s Setting up initramfs-tools-core (0.146ubuntu1) ... 131s Setting up linux-tools-common (6.14.0-10.10) ... 131s Setting up python3-systemd (235-1build6) ... 131s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 131s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 131s Setting up linux-image-generic (6.14.0-10.10) ... 131s Setting up python3-dbus (1.3.2-5build5) ... 132s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 132s Setting up initramfs-tools (0.146ubuntu1) ... 132s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 132s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 132s update-initramfs: deferring update (trigger activated) 132s Setting up linux-generic (6.14.0-10.10) ... 132s Setting up ubuntu-minimal (1.549) ... 132s Setting up python3-apt (2.9.9build1) ... 132s Setting up python3-bcrypt (4.2.0-2.1build1) ... 132s Setting up python3-yaml (6.0.2-1build2) ... 132s Setting up libfwupd3:amd64 (2.0.6-4) ... 132s Setting up python3-lazr.uri (1.0.6-6) ... 132s Setting up binutils (2.44-3ubuntu1) ... 132s Setting up ubuntu-standard (1.549) ... 132s Setting up cloud-init-base (25.1-0ubuntu3) ... 134s Setting up linux-virtual (6.14.0-10.10) ... 134s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 134s Setting up python3-gi (3.50.0-4build1) ... 134s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 134s Setting up fwupd (2.0.6-4) ... 135s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 135s fwupd.service is a disabled or a static unit not running, not starting it. 135s Setting up cloud-init (25.1-0ubuntu3) ... 135s Processing triggers for man-db (2.13.0-1) ... 136s Processing triggers for dbus (1.16.2-1ubuntu1) ... 136s Processing triggers for shared-mime-info (2.4-5) ... 136s Warning: program compiled against libxml 212 using older 209 137s Processing triggers for libc-bin (2.41-1ubuntu1) ... 137s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 137s /etc/kernel/postinst.d/initramfs-tools: 137s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 137s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 148s /etc/kernel/postinst.d/zz-update-grub: 148s Sourcing file `/etc/default/grub' 148s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 148s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 148s Generating grub configuration file ... 148s Found linux image: /boot/vmlinuz-6.14.0-10-generic 148s Found initrd image: /boot/initrd.img-6.14.0-10-generic 148s Found linux image: /boot/vmlinuz-6.12.0-16-generic 148s Found initrd image: /boot/initrd.img-6.12.0-16-generic 148s Found linux image: /boot/vmlinuz-6.11.0-8-generic 148s Found initrd image: /boot/initrd.img-6.11.0-8-generic 148s Warning: os-prober will not be executed to detect other bootable partitions. 148s Systems on them will not be added to the GRUB boot configuration. 148s Check GRUB_DISABLE_OS_PROBER documentation entry. 148s Adding boot menu entry for UEFI Firmware Settings ... 148s done 148s Processing triggers for initramfs-tools (0.146ubuntu1) ... 148s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 148s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 159s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 159s + /usr/lib/apt/apt-helper analyze-pattern ?true 159s + + sed s/\./\\./g 159s uname -r 159s + running_kernel_pattern=^linux-.*6\.12\.0-16-generic.* 159s + apt list ?obsolete 159s + tail -n+2 159s + cut -d/ -f1 159s + grep -v ^linux-.*6\.12\.0-16-generic.* 161s + obsolete_pkgs=linux-headers-6.11.0-8-generic 161s linux-headers-6.11.0-8 161s linux-headers-6.12.0-16 161s linux-image-6.11.0-8-generic 161s linux-modules-6.11.0-8-generic 161s linux-tools-6.11.0-8-generic 161s linux-tools-6.11.0-8 161s linux-tools-6.12.0-16 161s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-headers-6.12.0-16 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 linux-tools-6.12.0-16 161s Reading package lists... 161s Building dependency tree... 161s Reading state information... 161s Solving dependencies... 161s The following packages will be REMOVED: 161s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 161s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 161s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 161s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 161s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 161s linux-tools-6.12.0-16-generic* 161s 0 upgraded, 0 newly installed, 15 to remove and 5 not upgraded. 161s After this operation, 371 MB disk space will be freed. 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 162s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 162s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 162s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 162s Removing libpython3.12t64:amd64 (3.12.9-1) ... 162s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 162s Removing libnsl2:amd64 (1.3.0-3build3) ... 162s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 162s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 162s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 165s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 165s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 167s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 167s /etc/kernel/postrm.d/initramfs-tools: 167s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 168s /etc/kernel/postrm.d/zz-update-grub: 168s Sourcing file `/etc/default/grub' 168s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 168s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 168s Generating grub configuration file ... 168s Found linux image: /boot/vmlinuz-6.14.0-10-generic 168s Found initrd image: /boot/initrd.img-6.14.0-10-generic 168s Found linux image: /boot/vmlinuz-6.12.0-16-generic 168s Found initrd image: /boot/initrd.img-6.12.0-16-generic 168s Warning: os-prober will not be executed to detect other bootable partitions. 168s Systems on them will not be added to the GRUB boot configuration. 168s Check GRUB_DISABLE_OS_PROBER documentation entry. 168s Adding boot menu entry for UEFI Firmware Settings ... 168s done 168s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 168s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 168s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 168s Processing triggers for libc-bin (2.41-1ubuntu1) ... 168s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84830 files and directories currently installed.) 168s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 168s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 168s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 169s + grep -q trusty /etc/lsb-release 169s + [ ! -d /usr/share/doc/unattended-upgrades ] 169s + [ ! -d /usr/share/doc/lxd ] 169s + [ ! -d /usr/share/doc/lxd-client ] 169s + [ ! -d /usr/share/doc/snapd ] 169s + type iptables 169s + cat 169s + chmod 755 /etc/rc.local 169s + . /etc/rc.local 169s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 169s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 169s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 169s + uname -m 169s + [ x86_64 = ppc64le ] 169s + [ -d /run/systemd/system ] 169s + systemd-detect-virt --quiet --vm 169s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 169s + cat 169s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 169s + echo COMPRESS=lz4 169s autopkgtest [21:59:37]: upgrading testbed (apt dist-upgrade and autopurge) 169s Reading package lists... 169s Building dependency tree... 169s Reading state information... 169s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 170s Starting 2 pkgProblemResolver with broken count: 0 170s Done 170s Entering ResolveByKeep 170s 170s Calculating upgrade... 170s The following packages will be upgraded: 170s libc-bin libc-dev-bin libc6 libc6-dev locales 171s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 171s Need to get 10.5 MB of archives. 171s After this operation, 1024 B of additional disk space will be used. 171s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 171s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 171s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 172s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 172s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 173s Preconfiguring packages ... 173s Fetched 10.5 MB in 2s (5304 kB/s) 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 173s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 173s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 173s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 173s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 173s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 173s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 174s Setting up libc6:amd64 (2.41-1ubuntu2) ... 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 174s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 174s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 174s Setting up libc-bin (2.41-1ubuntu2) ... 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 174s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 174s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 174s Setting up locales (2.41-1ubuntu2) ... 175s Generating locales (this might take a while)... 176s en_US.UTF-8... done 176s Generation complete. 176s Setting up libc-dev-bin (2.41-1ubuntu2) ... 176s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 176s Processing triggers for man-db (2.13.0-1) ... 177s Processing triggers for systemd (257.3-1ubuntu3) ... 178s Reading package lists... 178s Building dependency tree... 178s Reading state information... 178s Starting pkgProblemResolver with broken count: 0 178s Starting 2 pkgProblemResolver with broken count: 0 178s Done 179s Solving dependencies... 179s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 179s autopkgtest [21:59:47]: rebooting testbed after setup commands that affected boot 202s autopkgtest [22:00:10]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 205s autopkgtest [22:00:13]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-biobase 208s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biobase 2.66.0-2 (dsc) [2083 B] 208s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biobase 2.66.0-2 (tar) [1979 kB] 208s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biobase 2.66.0-2 (diff) [8488 B] 208s gpgv: Signature made Sat Jan 11 19:34:54 2025 UTC 208s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 208s gpgv: issuer "crusoe@debian.org" 208s gpgv: Can't check signature: No public key 208s dpkg-source: warning: cannot verify inline signature for ./r-bioc-biobase_2.66.0-2.dsc: no acceptable signature found 208s autopkgtest [22:00:16]: testing package r-bioc-biobase version 2.66.0-2 208s autopkgtest [22:00:16]: build not needed 211s autopkgtest [22:00:19]: test pkg-r-autopkgtest: preparing testbed 211s Reading package lists... 212s Building dependency tree... 212s Reading state information... 212s Starting pkgProblemResolver with broken count: 0 212s Starting 2 pkgProblemResolver with broken count: 0 212s Done 213s The following NEW packages will be installed: 213s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 213s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 213s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 213s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 213s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 213s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 213s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 213s libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev libdeflate0 213s libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 libgomp1 213s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 213s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 213s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 213s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 213s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 213s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 213s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 213s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 213s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev 213s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 213s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 213s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 213s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6 213s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 213s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 213s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 213s littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc 213s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 213s r-bioc-all r-bioc-biobase r-bioc-biocgenerics r-bioc-biocstyle 213s r-bioc-biocversion r-bioc-golubesets r-bioc-limma r-cran-base64enc 213s r-cran-biocmanager r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 213s r-cran-commonmark r-cran-crayon r-cran-digest r-cran-evaluate r-cran-fastmap 213s r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools 213s r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later 213s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise r-cran-mime 213s r-cran-pkgkitten r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcpp 213s r-cran-rlang r-cran-rmarkdown r-cran-runit r-cran-sass r-cran-shiny 213s r-cran-sourcetools r-cran-statmod r-cran-tinytex r-cran-withr r-cran-xfun 213s r-cran-xtable r-cran-yaml t1utils tex-common texlive-base 213s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 213s xdg-utils zip zlib1g-dev 213s 0 upgraded, 200 newly installed, 0 to remove and 0 not upgraded. 213s Need to get 348 MB of archives. 213s After this operation, 1064 MB of additional disk space will be used. 213s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 213s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 213s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 216s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 216s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 216s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 216s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 216s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 216s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 216s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 217s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 217s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 218s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 218s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 218s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 218s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 218s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 220s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 220s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 220s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 220s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 221s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 221s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 221s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 221s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 221s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 221s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 221s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 221s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 221s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 221s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 221s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 221s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 222s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 222s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 222s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 222s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 222s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 222s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 222s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 222s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 222s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 222s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 222s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 222s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 222s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 222s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 222s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 222s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 222s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 222s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 222s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 222s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 222s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 222s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 222s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 222s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 222s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 222s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 223s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 223s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 223s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 223s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 223s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 223s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 223s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 223s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 223s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 223s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 223s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 223s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 223s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 223s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 223s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 223s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 223s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 223s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 223s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 223s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 223s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 223s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 223s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 223s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 223s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB] 224s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 224s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 224s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 224s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 224s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 224s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 224s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 224s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 224s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 224s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 224s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 224s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 224s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 224s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 224s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 224s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 224s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 224s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 224s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 225s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 225s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 225s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB] 225s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 225s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 225s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 225s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB] 225s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 225s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 225s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB] 225s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 225s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 225s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 225s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 225s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 225s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 225s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 225s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 225s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 225s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 225s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 225s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 225s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 225s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 225s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 225s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 226s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 226s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 226s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 226s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 226s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 226s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 226s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 227s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 227s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 227s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 227s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 227s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 227s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 227s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 227s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 228s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-all all 1.48.0-2 [11.5 MB] 228s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 228s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 228s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 228s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 228s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 228s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 228s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 228s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 228s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 228s Get:155 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 228s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 228s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 228s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 228s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 228s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 229s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 229s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 229s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 229s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 229s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 229s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 229s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 229s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 229s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 229s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 229s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 229s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 229s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 229s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 229s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 229s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 229s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 229s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 229s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 229s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 229s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 229s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 229s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 229s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 229s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 229s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 229s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 229s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 229s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB] 229s Get:190 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 229s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB] 230s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB] 231s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB] 231s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 235s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 235s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 235s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-golubesets all 1.48.0-2 [4524 kB] 235s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 235s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB] 235s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 235s Preconfiguring packages ... 236s Fetched 348 MB in 23s (15.4 MB/s) 236s Selecting previously unselected package libisl23:amd64. 236s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 236s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 236s Unpacking libisl23:amd64 (0.27-1) ... 236s Selecting previously unselected package libmpc3:amd64. 236s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 236s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 236s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 236s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 236s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 236s Selecting previously unselected package cpp-14. 236s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 236s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 236s Selecting previously unselected package cpp-x86-64-linux-gnu. 236s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 236s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 236s Selecting previously unselected package cpp. 236s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 236s Unpacking cpp (4:14.2.0-1ubuntu1) ... 236s Selecting previously unselected package libcc1-0:amd64. 236s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 236s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 236s Selecting previously unselected package libgomp1:amd64. 236s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 236s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 236s Selecting previously unselected package libitm1:amd64. 236s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 236s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 236s Selecting previously unselected package libasan8:amd64. 236s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 236s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 236s Selecting previously unselected package liblsan0:amd64. 236s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 236s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 236s Selecting previously unselected package libtsan2:amd64. 236s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 236s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 237s Selecting previously unselected package libubsan1:amd64. 237s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 237s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 237s Selecting previously unselected package libhwasan0:amd64. 237s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 237s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 237s Selecting previously unselected package libquadmath0:amd64. 237s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 237s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 237s Selecting previously unselected package libgcc-14-dev:amd64. 237s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 237s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 237s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 237s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 237s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 237s Selecting previously unselected package gcc-14. 237s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 237s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 237s Selecting previously unselected package gcc-x86-64-linux-gnu. 237s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 237s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 237s Selecting previously unselected package gcc. 237s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 237s Unpacking gcc (4:14.2.0-1ubuntu1) ... 237s Selecting previously unselected package libstdc++-14-dev:amd64. 237s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 237s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 238s Selecting previously unselected package g++-14-x86-64-linux-gnu. 238s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 238s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 238s Selecting previously unselected package g++-14. 238s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ... 238s Unpacking g++-14 (14.2.0-17ubuntu3) ... 238s Selecting previously unselected package g++-x86-64-linux-gnu. 238s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 238s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 238s Selecting previously unselected package g++. 238s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 238s Unpacking g++ (4:14.2.0-1ubuntu1) ... 238s Selecting previously unselected package build-essential. 238s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 238s Unpacking build-essential (12.10ubuntu1) ... 238s Selecting previously unselected package dctrl-tools. 238s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 238s Unpacking dctrl-tools (2.24-3build3) ... 238s Selecting previously unselected package fonts-dejavu-mono. 238s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 238s Unpacking fonts-dejavu-mono (2.37-8) ... 238s Selecting previously unselected package fonts-dejavu-core. 238s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 238s Unpacking fonts-dejavu-core (2.37-8) ... 238s Selecting previously unselected package fontconfig-config. 238s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 238s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 238s Selecting previously unselected package libfontconfig1:amd64. 238s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 238s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 238s Selecting previously unselected package fontconfig. 238s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 238s Unpacking fontconfig (2.15.0-2ubuntu1) ... 238s Selecting previously unselected package fonts-font-awesome. 238s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 238s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 238s Selecting previously unselected package fonts-glyphicons-halflings. 238s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 238s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 238s Selecting previously unselected package fonts-lmodern. 238s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ... 238s Unpacking fonts-lmodern (2.005-1) ... 239s Selecting previously unselected package fonts-mathjax. 239s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 239s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 239s Selecting previously unselected package libgfortran5:amd64. 239s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 239s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 239s Selecting previously unselected package libgfortran-14-dev:amd64. 239s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 239s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 239s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 239s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 239s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 239s Selecting previously unselected package gfortran-14. 239s Preparing to unpack .../039-gfortran-14_14.2.0-17ubuntu3_amd64.deb ... 239s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 239s Selecting previously unselected package gfortran-x86-64-linux-gnu. 239s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 239s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 239s Selecting previously unselected package gfortran. 239s Preparing to unpack .../041-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 239s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 239s Selecting previously unselected package icu-devtools. 239s Preparing to unpack .../042-icu-devtools_76.1-1ubuntu2_amd64.deb ... 239s Unpacking icu-devtools (76.1-1ubuntu2) ... 239s Selecting previously unselected package javascript-common. 239s Preparing to unpack .../043-javascript-common_12_all.deb ... 239s Unpacking javascript-common (12) ... 239s Selecting previously unselected package libio-string-perl. 239s Preparing to unpack .../044-libio-string-perl_1.08-4_all.deb ... 239s Unpacking libio-string-perl (1.08-4) ... 239s Selecting previously unselected package liblatex-tounicode-perl. 239s Preparing to unpack .../045-liblatex-tounicode-perl_0.55-1_all.deb ... 239s Unpacking liblatex-tounicode-perl (0.55-1) ... 239s Selecting previously unselected package libbibtex-parser-perl. 239s Preparing to unpack .../046-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 239s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 239s Selecting previously unselected package libblas3:amd64. 239s Preparing to unpack .../047-libblas3_3.12.1-2_amd64.deb ... 239s Unpacking libblas3:amd64 (3.12.1-2) ... 239s Selecting previously unselected package libblas-dev:amd64. 239s Preparing to unpack .../048-libblas-dev_3.12.1-2_amd64.deb ... 239s Unpacking libblas-dev:amd64 (3.12.1-2) ... 239s Selecting previously unselected package libbz2-dev:amd64. 239s Preparing to unpack .../049-libbz2-dev_1.0.8-6_amd64.deb ... 239s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 239s Selecting previously unselected package libpixman-1-0:amd64. 239s Preparing to unpack .../050-libpixman-1-0_0.44.0-3_amd64.deb ... 239s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 239s Selecting previously unselected package libxcb-render0:amd64. 239s Preparing to unpack .../051-libxcb-render0_1.17.0-2_amd64.deb ... 239s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 239s Selecting previously unselected package libxcb-shm0:amd64. 239s Preparing to unpack .../052-libxcb-shm0_1.17.0-2_amd64.deb ... 239s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 239s Selecting previously unselected package libxrender1:amd64. 240s Preparing to unpack .../053-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 240s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 240s Selecting previously unselected package libcairo2:amd64. 240s Preparing to unpack .../054-libcairo2_1.18.2-2_amd64.deb ... 240s Unpacking libcairo2:amd64 (1.18.2-2) ... 240s Selecting previously unselected package libdatrie1:amd64. 240s Preparing to unpack .../055-libdatrie1_0.2.13-3build1_amd64.deb ... 240s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 240s Selecting previously unselected package libdeflate0:amd64. 240s Preparing to unpack .../056-libdeflate0_1.23-1_amd64.deb ... 240s Unpacking libdeflate0:amd64 (1.23-1) ... 240s Selecting previously unselected package libdeflate-dev:amd64. 240s Preparing to unpack .../057-libdeflate-dev_1.23-1_amd64.deb ... 240s Unpacking libdeflate-dev:amd64 (1.23-1) ... 240s Selecting previously unselected package libgraphite2-3:amd64. 240s Preparing to unpack .../058-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 240s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 240s Selecting previously unselected package libharfbuzz0b:amd64. 240s Preparing to unpack .../059-libharfbuzz0b_10.2.0-1_amd64.deb ... 240s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 240s Selecting previously unselected package x11-common. 240s Preparing to unpack .../060-x11-common_1%3a7.7+23ubuntu3_all.deb ... 240s Unpacking x11-common (1:7.7+23ubuntu3) ... 240s Selecting previously unselected package libice6:amd64. 240s Preparing to unpack .../061-libice6_2%3a1.1.1-1_amd64.deb ... 240s Unpacking libice6:amd64 (2:1.1.1-1) ... 240s Selecting previously unselected package libicu-dev:amd64. 240s Preparing to unpack .../062-libicu-dev_76.1-1ubuntu2_amd64.deb ... 240s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 240s Selecting previously unselected package libjpeg-turbo8:amd64. 240s Preparing to unpack .../063-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 240s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 240s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 240s Preparing to unpack .../064-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ... 240s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 240s Selecting previously unselected package libjpeg8:amd64. 240s Preparing to unpack .../065-libjpeg8_8c-2ubuntu11_amd64.deb ... 240s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 240s Selecting previously unselected package libjpeg8-dev:amd64. 240s Preparing to unpack .../066-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 240s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 240s Selecting previously unselected package libjpeg-dev:amd64. 240s Preparing to unpack .../067-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 240s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 240s Selecting previously unselected package libjs-bootstrap. 240s Preparing to unpack .../068-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 240s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 240s Selecting previously unselected package libjs-popper.js. 240s Preparing to unpack .../069-libjs-popper.js_1.16.1+ds-6_all.deb ... 240s Unpacking libjs-popper.js (1.16.1+ds-6) ... 240s Selecting previously unselected package libjs-bootstrap4. 240s Preparing to unpack .../070-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 240s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 240s Selecting previously unselected package libjs-d3. 240s Preparing to unpack .../071-libjs-d3_3.5.17-4_all.deb ... 240s Unpacking libjs-d3 (3.5.17-4) ... 240s Selecting previously unselected package libjs-es5-shim. 241s Preparing to unpack .../072-libjs-es5-shim_4.6.7-2_all.deb ... 241s Unpacking libjs-es5-shim (4.6.7-2) ... 241s Selecting previously unselected package libjs-highlight.js. 241s Preparing to unpack .../073-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 241s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 241s Selecting previously unselected package libjs-jquery. 241s Preparing to unpack .../074-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 241s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 241s Selecting previously unselected package libjs-jquery-datatables. 241s Preparing to unpack .../075-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 241s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 241s Selecting previously unselected package libjs-sifter.js. 241s Preparing to unpack .../076-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 241s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 241s Selecting previously unselected package libjs-microplugin.js. 241s Preparing to unpack .../077-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 241s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 241s Selecting previously unselected package libjs-jquery-selectize.js. 241s Preparing to unpack .../078-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 241s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 241s Selecting previously unselected package libjs-jquery-ui. 241s Preparing to unpack .../079-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 241s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 241s Selecting previously unselected package libjs-json. 241s Preparing to unpack .../080-libjs-json_0~20221030+~1.0.8-1_all.deb ... 241s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 241s Selecting previously unselected package libjs-lunr. 241s Preparing to unpack .../081-libjs-lunr_2.3.9~dfsg-2_all.deb ... 241s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 241s Selecting previously unselected package libjs-prettify. 241s Preparing to unpack .../082-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 241s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 241s Selecting previously unselected package libkpathsea6:amd64. 241s Preparing to unpack .../083-libkpathsea6_2024.20240313.70630+ds-6_amd64.deb ... 241s Unpacking libkpathsea6:amd64 (2024.20240313.70630+ds-6) ... 241s Selecting previously unselected package liblapack3:amd64. 241s Preparing to unpack .../084-liblapack3_3.12.1-2_amd64.deb ... 241s Unpacking liblapack3:amd64 (3.12.1-2) ... 241s Selecting previously unselected package liblapack-dev:amd64. 241s Preparing to unpack .../085-liblapack-dev_3.12.1-2_amd64.deb ... 241s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 241s Selecting previously unselected package liblerc4:amd64. 241s Preparing to unpack .../086-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 241s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 241s Selecting previously unselected package liblua5.4-0:amd64. 241s Preparing to unpack .../087-liblua5.4-0_5.4.7-1_amd64.deb ... 241s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 241s Selecting previously unselected package libmpfi0:amd64. 241s Preparing to unpack .../088-libmpfi0_1.5.4+ds-4_amd64.deb ... 241s Unpacking libmpfi0:amd64 (1.5.4+ds-4) ... 241s Selecting previously unselected package libncurses-dev:amd64. 241s Preparing to unpack .../089-libncurses-dev_6.5+20250216-2_amd64.deb ... 241s Unpacking libncurses-dev:amd64 (6.5+20250216-2) ... 241s Selecting previously unselected package libthai-data. 241s Preparing to unpack .../090-libthai-data_0.1.29-2build1_all.deb ... 241s Unpacking libthai-data (0.1.29-2build1) ... 242s Selecting previously unselected package libthai0:amd64. 242s Preparing to unpack .../091-libthai0_0.1.29-2build1_amd64.deb ... 242s Unpacking libthai0:amd64 (0.1.29-2build1) ... 242s Selecting previously unselected package libpango-1.0-0:amd64. 242s Preparing to unpack .../092-libpango-1.0-0_1.56.2-1_amd64.deb ... 242s Unpacking libpango-1.0-0:amd64 (1.56.2-1) ... 242s Selecting previously unselected package libpangoft2-1.0-0:amd64. 242s Preparing to unpack .../093-libpangoft2-1.0-0_1.56.2-1_amd64.deb ... 242s Unpacking libpangoft2-1.0-0:amd64 (1.56.2-1) ... 242s Selecting previously unselected package libpangocairo-1.0-0:amd64. 242s Preparing to unpack .../094-libpangocairo-1.0-0_1.56.2-1_amd64.deb ... 242s Unpacking libpangocairo-1.0-0:amd64 (1.56.2-1) ... 242s Selecting previously unselected package libpaper2:amd64. 242s Preparing to unpack .../095-libpaper2_2.2.5-0.3_amd64.deb ... 242s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 242s Selecting previously unselected package libpaper-utils. 242s Preparing to unpack .../096-libpaper-utils_2.2.5-0.3_amd64.deb ... 242s Unpacking libpaper-utils (2.2.5-0.3) ... 242s Selecting previously unselected package libpcre2-16-0:amd64. 242s Preparing to unpack .../097-libpcre2-16-0_10.45-1_amd64.deb ... 242s Unpacking libpcre2-16-0:amd64 (10.45-1) ... 242s Selecting previously unselected package libpcre2-32-0:amd64. 242s Preparing to unpack .../098-libpcre2-32-0_10.45-1_amd64.deb ... 242s Unpacking libpcre2-32-0:amd64 (10.45-1) ... 242s Selecting previously unselected package libpcre2-posix3:amd64. 242s Preparing to unpack .../099-libpcre2-posix3_10.45-1_amd64.deb ... 242s Unpacking libpcre2-posix3:amd64 (10.45-1) ... 242s Selecting previously unselected package libpcre2-dev:amd64. 242s Preparing to unpack .../100-libpcre2-dev_10.45-1_amd64.deb ... 242s Unpacking libpcre2-dev:amd64 (10.45-1) ... 242s Selecting previously unselected package libpkgconf3:amd64. 242s Preparing to unpack .../101-libpkgconf3_1.8.1-4_amd64.deb ... 242s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 242s Selecting previously unselected package zlib1g-dev:amd64. 242s Preparing to unpack .../102-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 242s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 242s Selecting previously unselected package libpng-dev:amd64. 242s Preparing to unpack .../103-libpng-dev_1.6.47-1_amd64.deb ... 242s Unpacking libpng-dev:amd64 (1.6.47-1) ... 242s Selecting previously unselected package libpotrace0:amd64. 242s Preparing to unpack .../104-libpotrace0_1.16-2build1_amd64.deb ... 242s Unpacking libpotrace0:amd64 (1.16-2build1) ... 242s Selecting previously unselected package libptexenc1:amd64. 242s Preparing to unpack .../105-libptexenc1_2024.20240313.70630+ds-6_amd64.deb ... 242s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-6) ... 242s Selecting previously unselected package libreadline-dev:amd64. 242s Preparing to unpack .../106-libreadline-dev_8.2-6_amd64.deb ... 242s Unpacking libreadline-dev:amd64 (8.2-6) ... 242s Selecting previously unselected package libsharpyuv0:amd64. 242s Preparing to unpack .../107-libsharpyuv0_1.5.0-0.1_amd64.deb ... 242s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 242s Selecting previously unselected package libsm6:amd64. 242s Preparing to unpack .../108-libsm6_2%3a1.2.4-1_amd64.deb ... 242s Unpacking libsm6:amd64 (2:1.2.4-1) ... 242s Selecting previously unselected package libsynctex2:amd64. 242s Preparing to unpack .../109-libsynctex2_2024.20240313.70630+ds-6_amd64.deb ... 242s Unpacking libsynctex2:amd64 (2024.20240313.70630+ds-6) ... 242s Selecting previously unselected package libtcl8.6:amd64. 242s Preparing to unpack .../110-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 242s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 242s Selecting previously unselected package libteckit0:amd64. 242s Preparing to unpack .../111-libteckit0_2.5.12+ds1-1_amd64.deb ... 242s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 242s Selecting previously unselected package libtexlua53-5:amd64. 242s Preparing to unpack .../112-libtexlua53-5_2024.20240313.70630+ds-6_amd64.deb ... 242s Unpacking libtexlua53-5:amd64 (2024.20240313.70630+ds-6) ... 242s Selecting previously unselected package libjbig0:amd64. 242s Preparing to unpack .../113-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 242s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 242s Selecting previously unselected package libwebp7:amd64. 242s Preparing to unpack .../114-libwebp7_1.5.0-0.1_amd64.deb ... 242s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 242s Selecting previously unselected package libtiff6:amd64. 242s Preparing to unpack .../115-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 242s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 242s Selecting previously unselected package libxft2:amd64. 242s Preparing to unpack .../116-libxft2_2.3.6-1build1_amd64.deb ... 242s Unpacking libxft2:amd64 (2.3.6-1build1) ... 243s Selecting previously unselected package libxss1:amd64. 243s Preparing to unpack .../117-libxss1_1%3a1.2.3-1build3_amd64.deb ... 243s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 243s Selecting previously unselected package libtk8.6:amd64. 243s Preparing to unpack .../118-libtk8.6_8.6.16-1_amd64.deb ... 243s Unpacking libtk8.6:amd64 (8.6.16-1) ... 243s Selecting previously unselected package libxt6t64:amd64. 243s Preparing to unpack .../119-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 243s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 243s Selecting previously unselected package libxmu6:amd64. 243s Preparing to unpack .../120-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 243s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 243s Selecting previously unselected package libxpm4:amd64. 243s Preparing to unpack .../121-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 243s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 243s Selecting previously unselected package libxaw7:amd64. 243s Preparing to unpack .../122-libxaw7_2%3a1.0.16-1_amd64.deb ... 243s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 243s Selecting previously unselected package libxi6:amd64. 243s Preparing to unpack .../123-libxi6_2%3a1.8.2-1_amd64.deb ... 243s Unpacking libxi6:amd64 (2:1.8.2-1) ... 243s Selecting previously unselected package libzzip-0-13t64:amd64. 243s Preparing to unpack .../124-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 243s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 243s Selecting previously unselected package zip. 243s Preparing to unpack .../125-zip_3.0-14ubuntu2_amd64.deb ... 243s Unpacking zip (3.0-14ubuntu2) ... 243s Selecting previously unselected package unzip. 243s Preparing to unpack .../126-unzip_6.0-28ubuntu6_amd64.deb ... 243s Unpacking unzip (6.0-28ubuntu6) ... 243s Selecting previously unselected package xdg-utils. 243s Preparing to unpack .../127-xdg-utils_1.2.1-2ubuntu1_all.deb ... 243s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 243s Selecting previously unselected package r-base-core. 243s Preparing to unpack .../128-r-base-core_4.4.3-1_amd64.deb ... 243s Unpacking r-base-core (4.4.3-1) ... 243s Selecting previously unselected package r-cran-littler. 243s Preparing to unpack .../129-r-cran-littler_0.3.20-2_amd64.deb ... 243s Unpacking r-cran-littler (0.3.20-2) ... 243s Selecting previously unselected package littler. 243s Preparing to unpack .../130-littler_0.3.20-2_all.deb ... 243s Unpacking littler (0.3.20-2) ... 243s Selecting previously unselected package node-bootstrap-sass. 243s Preparing to unpack .../131-node-bootstrap-sass_3.4.3-2_all.deb ... 243s Unpacking node-bootstrap-sass (3.4.3-2) ... 243s Selecting previously unselected package node-html5shiv. 243s Preparing to unpack .../132-node-html5shiv_3.7.3+dfsg-5_all.deb ... 243s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 243s Selecting previously unselected package node-normalize.css. 243s Preparing to unpack .../133-node-normalize.css_8.0.1-5_all.deb ... 243s Unpacking node-normalize.css (8.0.1-5) ... 243s Selecting previously unselected package pandoc-data. 243s Preparing to unpack .../134-pandoc-data_3.1.11.1-3build1_all.deb ... 243s Unpacking pandoc-data (3.1.11.1-3build1) ... 243s Selecting previously unselected package pandoc. 244s Preparing to unpack .../135-pandoc_3.1.11.1+ds-2_amd64.deb ... 244s Unpacking pandoc (3.1.11.1+ds-2) ... 244s Selecting previously unselected package liblzma-dev:amd64. 244s Preparing to unpack .../136-liblzma-dev_5.6.4-1_amd64.deb ... 244s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 244s Selecting previously unselected package pkgconf-bin. 244s Preparing to unpack .../137-pkgconf-bin_1.8.1-4_amd64.deb ... 244s Unpacking pkgconf-bin (1.8.1-4) ... 244s Selecting previously unselected package pkgconf:amd64. 244s Preparing to unpack .../138-pkgconf_1.8.1-4_amd64.deb ... 244s Unpacking pkgconf:amd64 (1.8.1-4) ... 244s Selecting previously unselected package libtirpc-dev:amd64. 244s Preparing to unpack .../139-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 244s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 244s Selecting previously unselected package r-base-dev. 244s Preparing to unpack .../140-r-base-dev_4.4.3-1_all.deb ... 244s Unpacking r-base-dev (4.4.3-1) ... 244s Selecting previously unselected package pkg-r-autopkgtest. 244s Preparing to unpack .../141-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 244s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 244s Selecting previously unselected package r-bioc-biocgenerics. 245s Preparing to unpack .../142-r-bioc-biocgenerics_0.52.0-2_all.deb ... 245s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 245s Selecting previously unselected package r-bioc-biobase. 245s Preparing to unpack .../143-r-bioc-biobase_2.66.0-2_amd64.deb ... 245s Unpacking r-bioc-biobase (2.66.0-2) ... 245s Selecting previously unselected package r-bioc-all. 245s Preparing to unpack .../144-r-bioc-all_1.48.0-2_all.deb ... 245s Unpacking r-bioc-all (1.48.0-2) ... 245s Selecting previously unselected package r-cran-base64enc. 245s Preparing to unpack .../145-r-cran-base64enc_0.1-3-3_amd64.deb ... 245s Unpacking r-cran-base64enc (0.1-3-3) ... 245s Selecting previously unselected package r-cran-digest. 245s Preparing to unpack .../146-r-cran-digest_0.6.37-1_amd64.deb ... 245s Unpacking r-cran-digest (0.6.37-1) ... 245s Selecting previously unselected package r-cran-fastmap. 245s Preparing to unpack .../147-r-cran-fastmap_1.2.0-1_amd64.deb ... 245s Unpacking r-cran-fastmap (1.2.0-1) ... 245s Selecting previously unselected package r-cran-rlang. 245s Preparing to unpack .../148-r-cran-rlang_1.1.5-1_amd64.deb ... 245s Unpacking r-cran-rlang (1.1.5-1) ... 245s Selecting previously unselected package r-cran-htmltools. 245s Preparing to unpack .../149-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 245s Unpacking r-cran-htmltools (0.5.8.1-1) ... 245s Selecting previously unselected package r-cran-evaluate. 245s Preparing to unpack .../150-r-cran-evaluate_1.0.3-1_all.deb ... 245s Unpacking r-cran-evaluate (1.0.3-1) ... 245s Selecting previously unselected package r-cran-xfun. 245s Preparing to unpack .../151-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 245s Unpacking r-cran-xfun (0.51+dfsg-1) ... 245s Selecting previously unselected package r-cran-highr. 245s Preparing to unpack .../152-r-cran-highr_0.11+dfsg-1_all.deb ... 245s Unpacking r-cran-highr (0.11+dfsg-1) ... 245s Selecting previously unselected package r-cran-yaml. 245s Preparing to unpack .../153-r-cran-yaml_2.3.10-1_amd64.deb ... 245s Unpacking r-cran-yaml (2.3.10-1) ... 245s Selecting previously unselected package libjs-mathjax. 245s Preparing to unpack .../154-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 245s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 246s Selecting previously unselected package r-cran-knitr. 246s Preparing to unpack .../155-r-cran-knitr_1.49+dfsg-1_all.deb ... 246s Unpacking r-cran-knitr (1.49+dfsg-1) ... 246s Selecting previously unselected package r-cran-cachem. 246s Preparing to unpack .../156-r-cran-cachem_1.1.0-1_amd64.deb ... 246s Unpacking r-cran-cachem (1.1.0-1) ... 246s Selecting previously unselected package r-cran-jquerylib. 246s Preparing to unpack .../157-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 246s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 246s Selecting previously unselected package r-cran-jsonlite. 246s Preparing to unpack .../158-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 246s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 246s Selecting previously unselected package r-cran-cli. 246s Preparing to unpack .../159-r-cran-cli_3.6.4-1_amd64.deb ... 246s Unpacking r-cran-cli (3.6.4-1) ... 246s Selecting previously unselected package r-cran-glue. 246s Preparing to unpack .../160-r-cran-glue_1.8.0-1_amd64.deb ... 246s Unpacking r-cran-glue (1.8.0-1) ... 246s Selecting previously unselected package r-cran-lifecycle. 246s Preparing to unpack .../161-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 246s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 246s Selecting previously unselected package r-cran-memoise. 246s Preparing to unpack .../162-r-cran-memoise_2.0.1-1_all.deb ... 246s Unpacking r-cran-memoise (2.0.1-1) ... 246s Selecting previously unselected package r-cran-mime. 246s Preparing to unpack .../163-r-cran-mime_0.12-2_amd64.deb ... 246s Unpacking r-cran-mime (0.12-2) ... 246s Selecting previously unselected package r-cran-fs. 246s Preparing to unpack .../164-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 246s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 246s Selecting previously unselected package r-cran-r6. 246s Preparing to unpack .../165-r-cran-r6_2.6.1-1_all.deb ... 246s Unpacking r-cran-r6 (2.6.1-1) ... 246s Selecting previously unselected package r-cran-rappdirs. 246s Preparing to unpack .../166-r-cran-rappdirs_0.3.3-1_amd64.deb ... 246s Unpacking r-cran-rappdirs (0.3.3-1) ... 246s Selecting previously unselected package r-cran-sass. 246s Preparing to unpack .../167-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 246s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 246s Selecting previously unselected package r-cran-bslib. 246s Preparing to unpack .../168-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 246s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 247s Selecting previously unselected package r-cran-fontawesome. 247s Preparing to unpack .../169-r-cran-fontawesome_0.5.3-1_all.deb ... 247s Unpacking r-cran-fontawesome (0.5.3-1) ... 247s Selecting previously unselected package r-cran-tinytex. 247s Preparing to unpack .../170-r-cran-tinytex_0.56-1_all.deb ... 247s Unpacking r-cran-tinytex (0.56-1) ... 247s Selecting previously unselected package libjs-modernizr. 247s Preparing to unpack .../171-libjs-modernizr_3.13.0-0.1_all.deb ... 247s Unpacking libjs-modernizr (3.13.0-0.1) ... 247s Selecting previously unselected package r-cran-pkgkitten. 247s Preparing to unpack .../172-r-cran-pkgkitten_0.2.4-1_all.deb ... 247s Unpacking r-cran-pkgkitten (0.2.4-1) ... 247s Selecting previously unselected package r-cran-rcpp. 247s Preparing to unpack .../173-r-cran-rcpp_1.0.14-1_amd64.deb ... 247s Unpacking r-cran-rcpp (1.0.14-1) ... 247s Selecting previously unselected package r-cran-later. 247s Preparing to unpack .../174-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 247s Unpacking r-cran-later (1.4.1+dfsg-1) ... 247s Selecting previously unselected package r-cran-magrittr. 247s Preparing to unpack .../175-r-cran-magrittr_2.0.3-1_amd64.deb ... 247s Unpacking r-cran-magrittr (2.0.3-1) ... 247s Selecting previously unselected package r-cran-promises. 247s Preparing to unpack .../176-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 247s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 247s Selecting previously unselected package r-cran-httpuv. 247s Preparing to unpack .../177-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 247s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 247s Selecting previously unselected package r-cran-xtable. 247s Preparing to unpack .../178-r-cran-xtable_1%3a1.8-4-2_all.deb ... 247s Unpacking r-cran-xtable (1:1.8-4-2) ... 247s Selecting previously unselected package r-cran-sourcetools. 247s Preparing to unpack .../179-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 247s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 247s Selecting previously unselected package r-cran-crayon. 247s Preparing to unpack .../180-r-cran-crayon_1.5.3-1_all.deb ... 247s Unpacking r-cran-crayon (1.5.3-1) ... 247s Selecting previously unselected package r-cran-withr. 247s Preparing to unpack .../181-r-cran-withr_3.0.2+dfsg-1_all.deb ... 247s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 247s Selecting previously unselected package r-cran-commonmark. 247s Preparing to unpack .../182-r-cran-commonmark_1.9.2-2_amd64.deb ... 247s Unpacking r-cran-commonmark (1.9.2-2) ... 247s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 247s Preparing to unpack .../183-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 247s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 247s Selecting previously unselected package r-cran-shiny. 247s Preparing to unpack .../184-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 247s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 247s Selecting previously unselected package r-cran-rmarkdown. 247s Preparing to unpack .../185-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 247s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 247s Selecting previously unselected package r-cran-bookdown. 247s Preparing to unpack .../186-r-cran-bookdown_0.42+dfsg-1_all.deb ... 247s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 248s Selecting previously unselected package r-cran-biocmanager. 248s Preparing to unpack .../187-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 248s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 248s Selecting previously unselected package tex-common. 248s Preparing to unpack .../188-tex-common_6.19_all.deb ... 248s Unpacking tex-common (6.19) ... 248s Selecting previously unselected package t1utils. 248s Preparing to unpack .../189-t1utils_1.41-4build3_amd64.deb ... 248s Unpacking t1utils (1.41-4build3) ... 248s Selecting previously unselected package texlive-binaries. 248s Preparing to unpack .../190-texlive-binaries_2024.20240313.70630+ds-6_amd64.deb ... 248s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ... 248s Selecting previously unselected package texlive-base. 248s Preparing to unpack .../191-texlive-base_2024.20250114-1_all.deb ... 248s Unpacking texlive-base (2024.20250114-1) ... 249s Selecting previously unselected package texlive-latex-base. 249s Preparing to unpack .../192-texlive-latex-base_2024.20250114-1_all.deb ... 249s Unpacking texlive-latex-base (2024.20250114-1) ... 249s Selecting previously unselected package texlive-bibtex-extra. 249s Preparing to unpack .../193-texlive-bibtex-extra_2024.20250114-1_all.deb ... 249s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 251s Selecting previously unselected package r-bioc-biocversion. 251s Preparing to unpack .../194-r-bioc-biocversion_3.20.0-2_all.deb ... 251s Unpacking r-bioc-biocversion (3.20.0-2) ... 251s Selecting previously unselected package r-bioc-biocstyle. 251s Preparing to unpack .../195-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 251s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 251s Selecting previously unselected package r-bioc-golubesets. 251s Preparing to unpack .../196-r-bioc-golubesets_1.48.0-2_all.deb ... 251s Unpacking r-bioc-golubesets (1.48.0-2) ... 251s Selecting previously unselected package r-cran-statmod. 251s Preparing to unpack .../197-r-cran-statmod_1.5.0-1_amd64.deb ... 251s Unpacking r-cran-statmod (1.5.0-1) ... 251s Selecting previously unselected package r-bioc-limma. 251s Preparing to unpack .../198-r-bioc-limma_3.62.2+dfsg-1_amd64.deb ... 251s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 251s Selecting previously unselected package r-cran-runit. 252s Preparing to unpack .../199-r-cran-runit_0.4.33-1_all.deb ... 252s Unpacking r-cran-runit (0.4.33-1) ... 252s Setting up libjs-json (0~20221030+~1.0.8-1) ... 252s Setting up javascript-common (12) ... 252s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 252s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 252s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 252s Setting up libncurses-dev:amd64 (6.5+20250216-2) ... 252s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 252s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 252s Setting up libxpm4:amd64 (1:3.5.17-1build2) ... 252s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 252s Setting up libxi6:amd64 (2:1.8.2-1) ... 252s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 252s Setting up libdatrie1:amd64 (0.2.13-3build1) ... 252s Setting up libjs-popper.js (1.16.1+ds-6) ... 252s Setting up libxcb-render0:amd64 (1.17.0-2) ... 252s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 252s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 252s Setting up libjs-lunr (2.3.9~dfsg-2) ... 252s Setting up unzip (6.0-28ubuntu6) ... 252s Setting up liblatex-tounicode-perl (0.55-1) ... 252s Setting up x11-common (1:7.7+23ubuntu3) ... 252s Setting up node-html5shiv (3.7.3+dfsg-5) ... 252s Setting up libdeflate0:amd64 (1.23-1) ... 252s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 252s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 252s Setting up libreadline-dev:amd64 (8.2-6) ... 252s Setting up libgomp1:amd64 (15-20250222-0ubuntu1) ... 252s Setting up libjs-modernizr (3.13.0-0.1) ... 252s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 252s Setting up libpcre2-16-0:amd64 (10.45-1) ... 252s Setting up libjs-es5-shim (4.6.7-2) ... 252s Setting up tex-common (6.19) ... 252s update-language: texlive-base not installed and configured, doing nothing! 252s Setting up libio-string-perl (1.08-4) ... 252s Setting up zip (3.0-14ubuntu2) ... 252s Setting up libpcre2-32-0:amd64 (10.45-1) ... 252s Setting up libblas3:amd64 (3.12.1-2) ... 252s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 252s Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 252s Setting up libpkgconf3:amd64 (1.8.1-4) ... 252s Setting up libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 252s Setting up libteckit0:amd64 (2.5.12+ds1-1) ... 252s Setting up t1utils (1.41-4build3) ... 252s Setting up libquadmath0:amd64 (15-20250222-0ubuntu1) ... 252s Setting up libtexlua53-5:amd64 (2024.20240313.70630+ds-6) ... 252s Setting up libjs-d3 (3.5.17-4) ... 252s Setting up fonts-dejavu-mono (2.37-8) ... 252s Setting up libmpc3:amd64 (1.3.1-1build2) ... 252s Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... 252s Setting up libmpfi0:amd64 (1.5.4+ds-4) ... 252s Setting up icu-devtools (76.1-1ubuntu2) ... 252s Setting up fonts-dejavu-core (2.37-8) ... 252s Setting up pkgconf-bin (1.8.1-4) ... 252s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 252s Setting up libkpathsea6:amd64 (2024.20240313.70630+ds-6) ... 252s Setting up libgfortran5:amd64 (15-20250222-0ubuntu1) ... 252s Setting up libwebp7:amd64 (1.5.0-0.1) ... 252s Setting up liblzma-dev:amd64 (5.6.4-1) ... 252s Setting up libubsan1:amd64 (15-20250222-0ubuntu1) ... 252s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 252s Setting up libpcre2-posix3:amd64 (10.45-1) ... 252s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 252s Setting up libhwasan0:amd64 (15-20250222-0ubuntu1) ... 252s Setting up libasan8:amd64 (15-20250222-0ubuntu1) ... 252s Setting up fonts-lmodern (2.005-1) ... 252s Setting up liblua5.4-0:amd64 (5.4.7-1) ... 252s Setting up libharfbuzz0b:amd64 (10.2.0-1) ... 252s Setting up libthai-data (0.1.29-2build1) ... 252s Setting up node-bootstrap-sass (3.4.3-2) ... 252s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 252s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 252s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 252s Setting up libpaper2:amd64 (2.2.5-0.3) ... 253s Setting up pandoc-data (3.1.11.1-3build1) ... 253s Setting up libtsan2:amd64 (15-20250222-0ubuntu1) ... 253s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 253s Setting up libisl23:amd64 (0.27-1) ... 253s Setting up libdeflate-dev:amd64 (1.23-1) ... 253s Setting up node-normalize.css (8.0.1-5) ... 253s Setting up libicu-dev:amd64 (76.1-1ubuntu2) ... 253s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 253s Setting up xdg-utils (1.2.1-2ubuntu1) ... 253s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 253s Setting up libcc1-0:amd64 (15-20250222-0ubuntu1) ... 253s Setting up liblsan0:amd64 (15-20250222-0ubuntu1) ... 253s Setting up libblas-dev:amd64 (3.12.1-2) ... 253s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 253s Setting up dctrl-tools (2.24-3build3) ... 253s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 253s Setting up libitm1:amd64 (15-20250222-0ubuntu1) ... 253s Setting up libsynctex2:amd64 (2024.20240313.70630+ds-6) ... 253s Setting up libbz2-dev:amd64 (1.0.8-6) ... 253s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 253s Setting up libpotrace0:amd64 (1.16-2build1) ... 253s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 253s Setting up libice6:amd64 (2:1.1.1-1) ... 253s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 253s Setting up liblapack3:amd64 (3.12.1-2) ... 253s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 253s Setting up libpcre2-dev:amd64 (10.45-1) ... 253s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 253s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 253s Setting up libpng-dev:amd64 (1.6.47-1) ... 253s Setting up libpaper-utils (2.2.5-0.3) ... 253s Setting up libbibtex-parser-perl (1.05+dfsg-1) ... 253s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 253s Setting up pkgconf:amd64 (1.8.1-4) ... 253s Setting up libthai0:amd64 (0.1.29-2build1) ... 253s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 253s Setting up libptexenc1:amd64 (2024.20240313.70630+ds-6) ... 253s Setting up pandoc (3.1.11.1+ds-2) ... 253s Setting up liblapack-dev:amd64 (3.12.1-2) ... 253s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 253s Setting up cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 253s Setting up cpp-14 (14.2.0-17ubuntu3) ... 253s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 253s Setting up libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 253s Setting up libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 253s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 253s Setting up libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 253s Setting up libsm6:amd64 (2:1.2.4-1) ... 253s Setting up cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 253s Setting up libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 253s Setting up fontconfig (2.15.0-2ubuntu1) ... 255s Regenerating fonts cache... done. 255s Setting up libxft2:amd64 (2.3.6-1build1) ... 255s Setting up libtk8.6:amd64 (8.6.16-1) ... 255s Setting up libpango-1.0-0:amd64 (1.56.2-1) ... 255s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 255s Setting up libcairo2:amd64 (1.18.2-2) ... 255s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ... 255s Setting up cpp (4:14.2.0-1ubuntu1) ... 255s Setting up gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 255s Setting up libpangoft2-1.0-0:amd64 (1.56.2-1) ... 255s Setting up libpangocairo-1.0-0:amd64 (1.56.2-1) ... 255s Setting up libxmu6:amd64 (2:1.1.3-3build2) ... 255s Setting up gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 255s Setting up libxaw7:amd64 (2:1.0.16-1) ... 255s Setting up gcc-14 (14.2.0-17ubuntu3) ... 255s Setting up gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 255s Setting up r-base-core (4.4.3-1) ... 255s Creating config file /etc/R/Renviron with new version 255s Setting up r-cran-crayon (1.5.3-1) ... 255s Setting up r-cran-sourcetools (0.1.7-1-1) ... 255s Setting up g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 255s Setting up texlive-binaries (2024.20240313.70630+ds-6) ... 255s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 255s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 255s Setting up r-cran-statmod (1.5.0-1) ... 255s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 255s Setting up r-cran-commonmark (1.9.2-2) ... 255s Setting up g++-14 (14.2.0-17ubuntu3) ... 255s Setting up r-cran-r6 (2.6.1-1) ... 255s Setting up r-cran-pkgkitten (0.2.4-1) ... 255s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 255s Setting up texlive-base (2024.20250114-1) ... 256s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 256s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 256s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 257s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 257s Setting up r-cran-magrittr (2.0.3-1) ... 257s Setting up r-cran-rappdirs (0.3.3-1) ... 257s Setting up r-cran-littler (0.3.20-2) ... 257s Setting up r-cran-fs (1.6.5+dfsg-1) ... 257s Setting up r-cran-rcpp (1.0.14-1) ... 257s Setting up r-bioc-biocgenerics (0.52.0-2) ... 257s Setting up r-cran-rlang (1.1.5-1) ... 257s Setting up littler (0.3.20-2) ... 257s Setting up r-cran-xfun (0.51+dfsg-1) ... 257s Setting up r-cran-withr (3.0.2+dfsg-1) ... 257s Setting up r-cran-mime (0.12-2) ... 257s Setting up r-cran-base64enc (0.1-3-3) ... 257s Setting up r-cran-digest (0.6.37-1) ... 257s Setting up r-cran-yaml (2.3.10-1) ... 257s Setting up r-cran-evaluate (1.0.3-1) ... 257s Setting up r-cran-highr (0.11+dfsg-1) ... 257s Setting up r-cran-glue (1.8.0-1) ... 257s Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 257s Setting up r-cran-xtable (1:1.8-4-2) ... 257s Setting up r-cran-cli (3.6.4-1) ... 257s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 257s Setting up r-bioc-biocversion (3.20.0-2) ... 257s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 257s Setting up gcc (4:14.2.0-1ubuntu1) ... 257s Setting up r-cran-fastmap (1.2.0-1) ... 257s Setting up r-bioc-biobase (2.66.0-2) ... 257s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 257s Setting up texlive-latex-base (2024.20250114-1) ... 257s Setting up r-cran-runit (0.4.33-1) ... 257s Setting up r-bioc-limma (3.62.2+dfsg-1) ... 257s Setting up r-cran-later (1.4.1+dfsg-1) ... 257s Setting up r-cran-htmltools (0.5.8.1-1) ... 257s Setting up r-cran-tinytex (0.56-1) ... 257s Setting up r-cran-knitr (1.49+dfsg-1) ... 257s Setting up g++ (4:14.2.0-1ubuntu1) ... 257s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 257s Setting up r-cran-cachem (1.1.0-1) ... 257s Setting up r-cran-sass (0.4.9+dfsg-1) ... 257s Setting up build-essential (12.10ubuntu1) ... 257s Setting up r-bioc-all (1.48.0-2) ... 257s Setting up r-bioc-golubesets (1.48.0-2) ... 257s Setting up r-cran-fontawesome (0.5.3-1) ... 257s Setting up gfortran (4:14.2.0-1ubuntu1) ... 257s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 257s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 257s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 257s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 257s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 257s Setting up texlive-bibtex-extra (2024.20250114-1) ... 257s Setting up r-cran-memoise (2.0.1-1) ... 257s Setting up r-cran-promises (1.3.2+dfsg-1) ... 257s Setting up r-base-dev (4.4.3-1) ... 257s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 257s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 257s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 257s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 257s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 257s Setting up r-cran-bookdown (0.42+dfsg-1) ... 257s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 257s Processing triggers for libc-bin (2.41-1ubuntu2) ... 257s Processing triggers for man-db (2.13.0-1) ... 259s Processing triggers for install-info (7.1.1-1) ... 259s Processing triggers for tex-common (6.19) ... 260s Running updmap-sys. This may take some time... done. 260s Running mktexlsr /var/lib/texmf ... done. 260s Building format(s) --all. 290s This may take some time... done. 291s autopkgtest [22:01:39]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 291s autopkgtest [22:01:39]: test pkg-r-autopkgtest: [----------------------- 292s Test: Try to load the R library Biobase 292s 292s R version 4.4.3 (2025-02-28) -- "Trophy Case" 292s Copyright (C) 2025 The R Foundation for Statistical Computing 292s Platform: x86_64-pc-linux-gnu 292s 292s R is free software and comes with ABSOLUTELY NO WARRANTY. 292s You are welcome to redistribute it under certain conditions. 292s Type 'license()' or 'licence()' for distribution details. 292s 292s R is a collaborative project with many contributors. 292s Type 'contributors()' for more information and 292s 'citation()' on how to cite R or R packages in publications. 292s 292s Type 'demo()' for some demos, 'help()' for on-line help, or 292s 'help.start()' for an HTML browser interface to help. 292s Type 'q()' to quit R. 292s 292s > library('Biobase') 292s Loading required package: BiocGenerics 292s 292s Attaching package: ‘BiocGenerics’ 292s 292s The following objects are masked from ‘package:stats’: 292s 292s IQR, mad, sd, var, xtabs 292s 292s The following objects are masked from ‘package:base’: 292s 292s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 292s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 292s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 292s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 292s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 292s table, tapply, union, unique, unsplit, which.max, which.min 292s 292s Welcome to Bioconductor 292s 292s Vignettes contain introductory material; view with 292s 'browseVignettes()'. To cite Bioconductor, see 292s 'citation("Biobase")', and for packages 'citation("pkgname")'. 292s 292s > 292s > 292s Other tests are currently unsupported! 292s They will be progressively added. 292s autopkgtest [22:01:40]: test pkg-r-autopkgtest: -----------------------] 293s pkg-r-autopkgtest PASS 293s autopkgtest [22:01:41]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 293s autopkgtest [22:01:41]: @@@@@@@@@@@@@@@@@@@@ summary 293s pkg-r-autopkgtest PASS 311s nova [W] Skipping flock for amd64 311s Creating nova instance adt-plucky-amd64-r-bioc-biobase-20250315-215648-juju-7f2275-prod-proposed-migration-environment-15-ef99a4a2-22a6-4003-82de-373f338ae610 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 311s nova [W] Timed out waiting for 27e4c285-a92c-45b8-9199-d35f11983c60 to get deleted.