0s autopkgtest [21:56:47]: starting date and time: 2025-03-15 21:56:47+0000 0s autopkgtest [21:56:47]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [21:56:47]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ltuh3ton/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-beachmat --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu4-ram8-disk100 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-11.secgroup --name adt-plucky-amd64-r-bioc-beachmat-20250315-215646-juju-7f2275-prod-proposed-migration-environment-15-23b50129-9f94-4697-acf1-c1b441ca4bc7 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 54s autopkgtest [21:57:41]: testbed dpkg architecture: amd64 55s autopkgtest [21:57:42]: testbed apt version: 2.9.31ubuntu1 55s autopkgtest [21:57:42]: @@@@@@@@@@@@@@@@@@@@ test bed setup 55s autopkgtest [21:57:42]: testbed release detected to be: None 56s autopkgtest [21:57:43]: updating testbed package index (apt update) 56s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 57s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 57s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 57s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 57s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 57s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 57s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 57s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 57s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 57s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 57s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 57s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 57s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 57s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 57s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 57s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 57s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 58s Fetched 1265 kB in 1s (1430 kB/s) 58s Reading package lists... 59s + lsb_release --codename --short 59s + RELEASE=plucky 59s + cat 59s + [ plucky != trusty ] 59s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 59s Reading package lists... 59s Building dependency tree... 59s Reading state information... 60s Calculating upgrade... 60s Calculating upgrade... 60s The following package was automatically installed and is no longer required: 60s libnl-genl-3-200 60s Use 'sudo apt autoremove' to remove it. 60s The following NEW packages will be installed: 60s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 60s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 60s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 60s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 60s The following packages will be upgraded: 60s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 60s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 60s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 60s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 60s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 60s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 60s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 60s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 60s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 60s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 60s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 60s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 60s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 60s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 60s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 60s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 60s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 60s parted pci.ids pciutils pinentry-curses python-apt-common python3 60s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 60s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 60s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 60s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 60s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 60s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 60s xz-utils 60s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 60s Need to get 829 MB of archives. 60s After this operation, 325 MB of additional disk space will be used. 60s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 61s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 61s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 61s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 61s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 61s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 61s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 61s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 61s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 61s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 61s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 61s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 61s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 61s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 61s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 61s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 61s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 61s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 61s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 61s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 61s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 61s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 62s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 62s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 62s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 62s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 62s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 62s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 62s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 62s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 62s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 62s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 62s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 62s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 62s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 62s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 62s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 62s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 62s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 62s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 62s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 62s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 62s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 62s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 62s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 62s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 62s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 62s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 62s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 62s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 62s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 62s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 62s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 62s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 62s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 62s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 62s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 62s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 62s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 62s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 62s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 62s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 62s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 62s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 62s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 62s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 62s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 62s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 62s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 62s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 62s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 62s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 63s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 63s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 63s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 63s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 63s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 63s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 63s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 63s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 63s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 63s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 63s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 63s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 63s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 63s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 63s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 63s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 63s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 63s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 63s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 63s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 63s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 63s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 63s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 63s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 63s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 63s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 63s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 63s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 63s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 63s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 64s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 64s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 64s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 64s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 64s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 64s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 64s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 95s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 95s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 95s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 95s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 95s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 95s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 95s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 95s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 97s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 97s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 101s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 101s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 101s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 101s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 101s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 101s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 102s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 102s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 102s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 102s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 102s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 102s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 102s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 102s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 102s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 102s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 102s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 102s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 102s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 103s Preconfiguring packages ... 103s Fetched 829 MB in 42s (19.8 MB/s) 103s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 109s Preparing to unpack .../libaudit1_1%3a4.0.2-2ubuntu2_amd64.deb ... 109s Unpacking libaudit1:amd64 (1:4.0.2-2ubuntu2) over (1:4.0.2-2ubuntu1) ... 109s Setting up libaudit1:amd64 (1:4.0.2-2ubuntu2) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 109s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu6_amd64.deb ... 109s Unpacking libseccomp2:amd64 (2.5.5-1ubuntu6) over (2.5.5-1ubuntu5) ... 109s Setting up libseccomp2:amd64 (2.5.5-1ubuntu6) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 109s Preparing to unpack .../libselinux1_3.7-3ubuntu3_amd64.deb ... 109s Unpacking libselinux1:amd64 (3.7-3ubuntu3) over (3.7-3ubuntu2) ... 109s Setting up libselinux1:amd64 (3.7-3ubuntu3) ... 109s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 109s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 109s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 110s Setting up apt (2.9.33) ... 110s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 111s Preparing to unpack .../0-libsqlite3-0_3.46.1-2_amd64.deb ... 111s Unpacking libsqlite3-0:amd64 (3.46.1-2) over (3.46.1-1) ... 111s Preparing to unpack .../1-python3.13_3.13.2-2_amd64.deb ... 111s Unpacking python3.13 (3.13.2-2) over (3.13.2-1) ... 111s Preparing to unpack .../2-python3.13-minimal_3.13.2-2_amd64.deb ... 111s Unpacking python3.13-minimal (3.13.2-2) over (3.13.2-1) ... 111s Preparing to unpack .../3-libpython3.13-minimal_3.13.2-2_amd64.deb ... 111s Unpacking libpython3.13-minimal:amd64 (3.13.2-2) over (3.13.2-1) ... 112s Preparing to unpack .../4-libpython3.13-stdlib_3.13.2-2_amd64.deb ... 112s Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 112s Preparing to unpack .../5-libpython3-stdlib_3.13.2-2_amd64.deb ... 112s Unpacking libpython3-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 112s Preparing to unpack .../6-rsync_3.4.1+ds1-3_amd64.deb ... 112s Unpacking rsync (3.4.1+ds1-3) over (3.4.1-0syncable1) ... 112s Selecting previously unselected package libdebuginfod-common. 112s Preparing to unpack .../7-libdebuginfod-common_0.192-4_all.deb ... 112s Unpacking libdebuginfod-common (0.192-4) ... 112s Preparing to unpack .../8-libsemanage-common_3.7-2.1build1_all.deb ... 112s Unpacking libsemanage-common (3.7-2.1build1) over (3.7-2.1) ... 112s Setting up libsemanage-common (3.7-2.1build1) ... 112s (Reading database ... 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.../23-parted_3.6-5_amd64.deb ... 115s Unpacking parted (3.6-5) over (3.6-4build1) ... 115s Preparing to unpack .../24-libparted2t64_3.6-5_amd64.deb ... 115s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 115s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 115s Unpacking libparted2t64:amd64 (3.6-5) over (3.6-4build1) ... 115s Preparing to unpack .../25-pci.ids_0.0~2025.03.09-1_all.deb ... 115s Unpacking pci.ids (0.0~2025.03.09-1) over (0.0~2025.02.12-1) ... 115s Preparing to unpack .../26-pciutils_1%3a3.13.0-2_amd64.deb ... 115s Unpacking pciutils (1:3.13.0-2) over (1:3.13.0-1) ... 115s Preparing to unpack .../27-libpci3_1%3a3.13.0-2_amd64.deb ... 115s Unpacking libpci3:amd64 (1:3.13.0-2) over (1:3.13.0-1) ... 115s Preparing to unpack .../28-strace_6.13+ds-1ubuntu1_amd64.deb ... 115s Unpacking strace 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new version of config file /etc/mime.types ... 128s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 128s Setting up ubuntu-kernel-accessories (1.549) ... 128s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 128s Setting up pci.ids (0.0~2025.03.09-1) ... 128s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 128s Setting up apt-utils (2.9.33) ... 128s Setting up libdebuginfod-common (0.192-4) ... 128s Setting up exfatprogs (1.2.8-1) ... 128s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 128s Setting up bpftool (7.6.0+6.14.0-10.10) ... 128s Setting up libestr0:amd64 (0.1.11-2) ... 128s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 128s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 128s Setting up dosfstools (4.2-1.2) ... 128s Setting up rsyslog (8.2412.0-2ubuntu2) ... 128s info: The user `syslog' is already a member of `adm'. 129s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 129s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 129s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 129s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 129s Setting up systemd (257.3-1ubuntu3) ... 129s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 129s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 129s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 130s Setting up libparted2t64:amd64 (3.6-5) ... 130s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 130s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 130s Setting up linux-headers-generic (6.14.0-10.10) ... 130s Setting up libjemalloc2:amd64 (5.3.0-3) ... 130s Setting up locales (2.41-1ubuntu1) ... 130s Installing new version of config file /etc/locale.alias ... 131s Generating locales (this might take a while)... 132s en_US.UTF-8... done 132s Generation complete. 132s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 132s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 132s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 132s Installing new version of config file /etc/apparmor.d/fusermount3 ... 132s Installing new version of config file /etc/apparmor.d/lsusb ... 132s Installing new version of config file /etc/apparmor.d/openvpn ... 133s Reloading AppArmor profiles 134s Setting up libftdi1-2:amd64 (1.5-8build1) ... 134s Setting up libglib2.0-data (2.84.0-1) ... 134s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 134s Setting up libncurses6:amd64 (6.5+20250216-2) ... 134s Setting up strace (6.13+ds-1ubuntu1) ... 134s Setting up xz-utils (5.6.4-1) ... 134s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 135s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 135s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 135s Setting up udev (257.3-1ubuntu3) ... 136s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 138s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 138s Setting up libpci3:amd64 (1:3.13.0-2) ... 138s Setting up whiptail (0.52.24-4ubuntu2) ... 138s Setting up python-apt-common (2.9.9build1) ... 138s Setting up pnp.ids (0.393-3) ... 138s Setting up libnl-3-200:amd64 (3.7.0-1) ... 138s Setting up python3.13-minimal (3.13.2-2) ... 139s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 139s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 139s Setting up libc-dev-bin (2.41-1ubuntu1) ... 139s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 139s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 139s Setting up rsync (3.4.1+ds1-3) ... 140s rsync.service is a disabled or a static unit not running, not starting it. 140s Setting up python3.13-gdbm (3.13.2-2) ... 140s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 140s Setting up systemd-resolved (257.3-1ubuntu3) ... 140s Setting up initramfs-tools-bin (0.146ubuntu1) ... 140s Setting up ncurses-term (6.5+20250216-2) ... 140s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 140s Setting up libpython3.13:amd64 (3.13.2-2) ... 140s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 140s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 140s Setting up systemd-sysv (257.3-1ubuntu3) ... 140s Setting up linux-headers-virtual (6.14.0-10.10) ... 140s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 140s Setting up python3.13 (3.13.2-2) ... 141s Setting up htop (3.4.0-2) ... 141s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 143s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 143s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 143s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 143s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 143s Setting up parted (3.6-5) ... 143s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 143s Setting up python3 (3.13.2-2) ... 144s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 144s Setting up python3-markupsafe (2.1.5-1build4) ... 144s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 146s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 146s Setting up hwdata (0.393-3) ... 146s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 146s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 146s No schema files found: doing nothing. 146s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 146s Setting up linux-perf (6.14.0-10.10) ... 146s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 146s Setting up pciutils (1:3.13.0-2) ... 146s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 146s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 146s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 146s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 147s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 147s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 147s Setting up curl (8.12.1-3ubuntu1) ... 147s Setting up linux-image-virtual (6.14.0-10.10) ... 147s Setting up initramfs-tools-core (0.146ubuntu1) ... 147s Setting up linux-tools-common (6.14.0-10.10) ... 147s Setting up python3-systemd (235-1build6) ... 147s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 147s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 147s Setting up linux-image-generic (6.14.0-10.10) ... 147s Setting up python3-dbus (1.3.2-5build5) ... 147s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 147s Setting up initramfs-tools (0.146ubuntu1) ... 147s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 147s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 147s update-initramfs: deferring update (trigger activated) 147s Setting up linux-generic (6.14.0-10.10) ... 147s Setting up ubuntu-minimal (1.549) ... 147s Setting up python3-apt (2.9.9build1) ... 147s Setting up python3-bcrypt (4.2.0-2.1build1) ... 147s Setting up python3-yaml (6.0.2-1build2) ... 147s Setting up libfwupd3:amd64 (2.0.6-4) ... 147s Setting up python3-lazr.uri (1.0.6-6) ... 147s Setting up binutils (2.44-3ubuntu1) ... 147s Setting up ubuntu-standard (1.549) ... 147s Setting up cloud-init-base (25.1-0ubuntu3) ... 149s Setting up linux-virtual (6.14.0-10.10) ... 149s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 149s Setting up python3-gi (3.50.0-4build1) ... 149s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 149s Setting up fwupd (2.0.6-4) ... 150s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 150s fwupd.service is a disabled or a static unit not running, not starting it. 150s Setting up cloud-init (25.1-0ubuntu3) ... 150s Processing triggers for man-db (2.13.0-1) ... 152s Processing triggers for dbus (1.16.2-1ubuntu1) ... 152s Processing triggers for shared-mime-info (2.4-5) ... 152s Warning: program compiled against libxml 212 using older 209 152s Processing triggers for libc-bin (2.41-1ubuntu1) ... 152s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 152s /etc/kernel/postinst.d/initramfs-tools: 152s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 152s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 164s /etc/kernel/postinst.d/zz-update-grub: 164s Sourcing file `/etc/default/grub' 164s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 164s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 164s Generating grub configuration file ... 164s Found linux image: /boot/vmlinuz-6.14.0-10-generic 164s Found initrd image: /boot/initrd.img-6.14.0-10-generic 164s Found linux image: /boot/vmlinuz-6.12.0-16-generic 164s Found initrd image: /boot/initrd.img-6.12.0-16-generic 164s Found linux image: /boot/vmlinuz-6.11.0-8-generic 164s Found initrd image: /boot/initrd.img-6.11.0-8-generic 165s Warning: os-prober will not be executed to detect other bootable partitions. 165s Systems on them will not be added to the GRUB boot configuration. 165s Check GRUB_DISABLE_OS_PROBER documentation entry. 165s Adding boot menu entry for UEFI Firmware Settings ... 165s done 165s Processing triggers for initramfs-tools (0.146ubuntu1) ... 165s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 165s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 176s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 176s + /usr/lib/apt/apt-helper analyze-pattern ?true 176s + uname -r 176s + sed s/\./\\./g 176s + running_kernel_pattern=^linux-.*6\.12\.0-16-generic.* 176s + apt list ?obsolete 176s + tail -n+2 176s + cut -d/ -f1 176s + grep -v ^linux-.*6\.12\.0-16-generic.* 177s + obsolete_pkgs=linux-headers-6.11.0-8-generic 177s linux-headers-6.11.0-8 177s linux-headers-6.12.0-16 177s linux-image-6.11.0-8-generic 177s linux-modules-6.11.0-8-generic 177s linux-tools-6.11.0-8-generic 177s linux-tools-6.11.0-8 177s linux-tools-6.12.0-16 177s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-headers-6.12.0-16 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 linux-tools-6.12.0-16 177s Reading package lists... 178s Building dependency tree... 178s Reading state information... 178s Solving dependencies... 178s The following packages will be REMOVED: 178s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 178s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 178s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 178s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 178s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 178s linux-tools-6.12.0-16-generic* 178s 0 upgraded, 0 newly installed, 15 to remove and 5 not upgraded. 178s After this operation, 371 MB disk space will be freed. 178s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 178s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 178s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 178s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 178s Removing libpython3.12t64:amd64 (3.12.9-1) ... 178s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 178s Removing libnsl2:amd64 (1.3.0-3build3) ... 178s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 179s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 179s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 181s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 182s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 184s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 184s /etc/kernel/postrm.d/initramfs-tools: 184s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 184s /etc/kernel/postrm.d/zz-update-grub: 184s Sourcing file `/etc/default/grub' 184s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 184s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 184s Generating grub configuration file ... 184s Found linux image: /boot/vmlinuz-6.14.0-10-generic 184s Found initrd image: /boot/initrd.img-6.14.0-10-generic 184s Found linux image: /boot/vmlinuz-6.12.0-16-generic 184s Found initrd image: /boot/initrd.img-6.12.0-16-generic 185s Warning: os-prober will not be executed to detect other bootable partitions. 185s Systems on them will not be added to the GRUB boot configuration. 185s Check GRUB_DISABLE_OS_PROBER documentation entry. 185s Adding boot menu entry for UEFI Firmware Settings ... 185s done 185s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 185s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 185s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 185s Processing triggers for libc-bin (2.41-1ubuntu1) ... 185s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84830 files and directories currently installed.) 185s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 185s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 185s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 185s + grep -q trusty /etc/lsb-release 185s + [ ! -d /usr/share/doc/unattended-upgrades ] 185s + [ ! -d /usr/share/doc/lxd ] 185s + [ ! -d /usr/share/doc/lxd-client ] 185s + [ ! -d /usr/share/doc/snapd ] 185s + type iptables 185s + cat 185s + chmod 755 /etc/rc.local 185s + . /etc/rc.local 185s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 185s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 185s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 185s + uname -m 185s + [ x86_64 = ppc64le ] 185s + [ -d /run/systemd/system ] 185s + systemd-detect-virt --quiet --vm 185s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 185s + cat 185s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 185s + echo COMPRESS=lz4 185s autopkgtest [21:59:52]: upgrading testbed (apt dist-upgrade and autopurge) 186s Reading package lists... 186s Building dependency tree... 186s Reading state information... 186s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 186s Starting 2 pkgProblemResolver with broken count: 0 186s Done 187s Entering ResolveByKeep 187s 187s Calculating upgrade... 187s The following packages will be upgraded: 187s libc-bin libc-dev-bin libc6 libc6-dev locales 187s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 187s Need to get 10.5 MB of archives. 187s After this operation, 1024 B of additional disk space will be used. 187s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 188s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 188s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 188s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 188s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 189s Preconfiguring packages ... 189s Fetched 10.5 MB in 1s (9979 kB/s) 189s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 189s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 189s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 189s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 189s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 189s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 189s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 189s Setting up libc6:amd64 (2.41-1ubuntu2) ... 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 190s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 190s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 190s Setting up libc-bin (2.41-1ubuntu2) ... 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 190s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 190s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 190s Setting up locales (2.41-1ubuntu2) ... 191s Generating locales (this might take a while)... 192s en_US.UTF-8... done 192s Generation complete. 192s Setting up libc-dev-bin (2.41-1ubuntu2) ... 192s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 192s Processing triggers for man-db (2.13.0-1) ... 193s Processing triggers for systemd (257.3-1ubuntu3) ... 194s Reading package lists... 194s Building dependency tree... 194s Reading state information... 195s Starting pkgProblemResolver with broken count: 0 195s Starting 2 pkgProblemResolver with broken count: 0 195s Done 195s Solving dependencies... 195s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 196s autopkgtest [22:00:03]: rebooting testbed after setup commands that affected boot 209s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 217s autopkgtest [22:00:24]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 219s autopkgtest [22:00:26]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-beachmat 221s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-beachmat 2.22.0+ds-2 (dsc) [2238 B] 221s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-beachmat 2.22.0+ds-2 (tar) [63.2 kB] 221s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-beachmat 2.22.0+ds-2 (diff) [3200 B] 221s gpgv: Signature made Sun Jan 12 22:21:00 2025 UTC 221s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 221s gpgv: issuer "crusoe@debian.org" 221s gpgv: Can't check signature: No public key 221s dpkg-source: warning: cannot verify inline signature for ./r-bioc-beachmat_2.22.0+ds-2.dsc: no acceptable signature found 221s autopkgtest [22:00:28]: testing package r-bioc-beachmat version 2.22.0+ds-2 224s autopkgtest [22:00:31]: build not needed 228s autopkgtest [22:00:35]: test pkg-r-autopkgtest: preparing testbed 229s Reading package lists... 229s Building dependency tree... 229s Reading state information... 229s Starting pkgProblemResolver with broken count: 0 229s Starting 2 pkgProblemResolver with broken count: 0 229s Done 230s The following NEW packages will be installed: 230s build-essential comerr-dev cpp cpp-14 cpp-14-x86-64-linux-gnu 230s cpp-x86-64-linux-gnu dctrl-tools fontconfig fontconfig-config 230s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 230s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-14 230s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 230s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 230s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu hdf5-helpers 230s icu-devtools javascript-common krb5-multidev libaec-dev libaec0 libasan8 230s libbibtex-parser-perl libblas-dev libblas3 libblosc1 libboost-dev 230s libboost1.83-dev libbrotli-dev libbz2-dev libcairo2 libcc1-0 230s libcurl4-openssl-dev libdatrie1 libdeflate-dev libdeflate0 libevent-2.1-7t64 230s libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 libgmp-dev 230s libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev 230s libgomp1 libgraphite2-3 libgssrpc4t64 libharfbuzz0b libhdf5-310 230s libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 230s libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libhnswlib-dev libhwasan0 libice6 230s libicu-dev libidn2-dev libio-string-perl libisl23 libitm1 libjbig0 230s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 230s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 230s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 230s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 230s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 230s libjs-twitter-bootstrap-datepicker libkadm5clnt-mit12 libkadm5srv-mit12 230s libkdb5-10t64 libkpathsea6 libkrb5-dev liblapack-dev liblapack3 230s liblatex-tounicode-perl libldap-dev liblerc4 liblsan0 liblua5.4-0 230s liblzma-dev libmpc3 libmpfi0 libncurses-dev libnghttp2-dev libp11-kit-dev 230s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 230s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 230s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl-dev libptexenc1 230s libquadmath0 libreadline-dev librtmp-dev libsharpyuv0 libsm6 libsnappy1v5 230s libssh2-1-dev libssl-dev libstdc++-14-dev libsynctex2 libsz2 libtasn1-6-dev 230s libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 230s libtirpc-dev libtk8.6 libtsan2 libubsan1 libunbound8 libwebp7 libxaw7 230s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 230s libxss1 libxt6t64 libzstd-dev libzzip-0-13t64 littler nettle-dev 230s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 230s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 230s r-bioc-assorthead r-bioc-beachmat r-bioc-biocgenerics r-bioc-biocparallel 230s r-bioc-biocstyle r-bioc-biocversion r-bioc-delayedarray r-bioc-hdf5array 230s r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters 230s r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 230s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-base64enc r-cran-bh 230s r-cran-biocmanager r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem 230s r-cran-callr r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 230s r-cran-crayon r-cran-curl r-cran-desc r-cran-diffobj r-cran-digest 230s r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-formatr r-cran-fs 230s r-cran-futile.logger r-cran-futile.options r-cran-glue r-cran-highr 230s r-cran-htmltools r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr 230s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 230s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 230s r-cran-pkgbuild r-cran-pkgkitten r-cran-pkgload r-cran-praise 230s r-cran-prettyunits r-cran-processx r-cran-promises r-cran-ps r-cran-r6 230s r-cran-rappdirs r-cran-rcmdcheck r-cran-rcpp r-cran-rlang r-cran-rmarkdown 230s r-cran-rprojroot r-cran-sass r-cran-sessioninfo r-cran-shiny r-cran-snow 230s r-cran-sourcetools r-cran-testthat r-cran-tinytex r-cran-waldo r-cran-withr 230s r-cran-xfun r-cran-xopen r-cran-xtable r-cran-yaml t1utils tex-common 230s texlive-base texlive-bibtex-extra texlive-binaries texlive-fonts-extra 230s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 230s 0 upgraded, 282 newly installed, 0 to remove and 0 not upgraded. 230s Need to get 1012 MB of archives. 230s After this operation, 3071 MB of additional disk space will be used. 230s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 231s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 231s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 231s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 231s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 231s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 231s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 231s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 231s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 231s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 231s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 231s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 232s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 232s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 232s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 232s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 232s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 233s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 233s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 233s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 233s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 233s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 233s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 233s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 233s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 233s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 233s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 233s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 233s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 233s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 234s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 234s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 234s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 234s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 234s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 234s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 234s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 234s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 234s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 235s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 235s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 235s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 235s Get:43 http://ftpmaster.internal/ubuntu plucky/universe amd64 hdf5-helpers amd64 1.14.5+repack-3 [17.0 kB] 235s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 235s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 235s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 comerr-dev amd64 2.1-1.47.2-1ubuntu1 [44.9 kB] 235s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libgssrpc4t64 amd64 1.21.3-4ubuntu2 [58.1 kB] 235s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libkadm5clnt-mit12 amd64 1.21.3-4ubuntu2 [41.3 kB] 235s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libkdb5-10t64 amd64 1.21.3-4ubuntu2 [42.0 kB] 235s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libkadm5srv-mit12 amd64 1.21.3-4ubuntu2 [55.5 kB] 235s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 krb5-multidev amd64 1.21.3-4ubuntu2 [125 kB] 235s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 235s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 235s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 235s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 235s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 235s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 235s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB] 235s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB] 235s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB] 235s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 235s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli-dev amd64 1.1.0-2build4 [381 kB] 235s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 235s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 235s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 235s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 235s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 235s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 235s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libidn2-dev amd64 2.3.7-2build2 [120 kB] 235s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libkrb5-dev amd64 1.21.3-4ubuntu2 [11.9 kB] 235s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libldap-dev amd64 2.6.9+dfsg-1~exp2ubuntu1 [335 kB] 235s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 235s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 235s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 235s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnghttp2-dev amd64 1.64.0-1 [123 kB] 235s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libpsl-dev amd64 0.21.2-1.1build1 [76.4 kB] 235s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3ubuntu1 [10.0 kB] 235s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3ubuntu1 [341 kB] 235s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10 [144 kB] 235s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libunbound8 amd64 1.22.0-1ubuntu1 [519 kB] 235s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-dane0t64 amd64 3.8.9-2ubuntu2 [24.4 kB] 236s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2ubuntu2 [24.6 kB] 236s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libp11-kit-dev amd64 0.25.5-2ubuntu3 [23.5 kB] 236s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libtasn1-6-dev amd64 4.20.0-2 [98.1 kB] 236s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 nettle-dev amd64 3.10.1-1 [1187 kB] 236s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls28-dev amd64 3.8.9-2ubuntu2 [1118 kB] 236s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 236s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2build7 [66.7 kB] 236s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libssl-dev amd64 3.4.1-1ubuntu1 [2873 kB] 236s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libssh2-1-dev amd64 1.11.1-1 [292 kB] 236s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [444 kB] 236s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4-openssl-dev amd64 8.12.1-3ubuntu1 [522 kB] 236s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 236s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 236s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 236s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 236s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 236s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 236s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 236s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-cpp-310 amd64 1.14.5+repack-3 [129 kB] 236s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-fortran-310 amd64 1.14.5+repack-3 [108 kB] 236s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 236s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-3 [32.4 kB] 236s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-3 [11.7 kB] 236s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 236s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 237s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 237s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 237s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 237s Get:110 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec-dev amd64 1.1.3-1 [19.8 kB] 237s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-dev amd64 1.14.5+repack-3 [3505 kB] 237s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhnswlib-dev all 0.8.0-1build3 [24.4 kB] 237s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 237s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 237s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 238s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 238s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 238s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 238s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 238s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 238s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 238s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 238s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 238s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 238s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 238s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 238s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 238s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 238s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 238s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 238s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB] 238s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 238s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 238s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 238s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 238s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 238s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 238s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 238s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 238s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 238s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 238s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 238s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 238s Get:144 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 238s Get:145 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 238s Get:146 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 238s Get:147 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 238s Get:148 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 238s Get:149 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 238s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 238s Get:151 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB] 238s Get:152 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 238s Get:153 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 238s Get:154 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 238s Get:155 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB] 238s Get:156 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 238s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 238s Get:158 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB] 238s Get:159 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 238s Get:160 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 238s Get:161 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 238s Get:162 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 239s Get:163 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 239s Get:164 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 239s Get:165 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 239s Get:166 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 239s Get:167 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 239s Get:168 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 239s Get:169 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 239s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 239s Get:171 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 239s Get:172 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 239s Get:173 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 239s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 240s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 240s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 240s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 240s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 240s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 240s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 240s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 241s Get:182 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 241s Get:183 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 241s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 241s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 241s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 241s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-assorthead all 1.0.1+ds-2 [194 kB] 241s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 241s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 241s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 241s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 241s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 241s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 241s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 241s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 241s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 241s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 241s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 241s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1392 kB] 241s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 241s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 241s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 241s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-beachmat amd64 2.22.0+ds-2 [976 kB] 242s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 242s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 242s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 242s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 242s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 242s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 242s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 242s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 242s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 242s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 242s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 242s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 242s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 242s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 242s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 242s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 242s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 242s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 242s Get:222 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 242s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 242s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 242s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 242s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 242s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 242s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 242s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 242s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 242s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 243s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 243s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 243s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 243s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 243s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 243s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 243s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 243s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 243s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 243s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 243s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 243s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 243s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 243s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 243s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 243s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 243s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 243s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 243s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 243s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 243s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 243s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB] 243s Get:254 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 243s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB] 244s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB] 245s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB] 245s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 248s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 248s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 248s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5lib amd64 1.28.0+dfsg-2build1 [97.4 kB] 248s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5filters amd64 1.18.0+dfsg-2 [137 kB] 248s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5 amd64 2.50.2+dfsg-1build1 [822 kB] 248s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-hdf5array amd64 1.34.0-2build1 [8792 kB] 248s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 248s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 248s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 248s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 248s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 248s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 248s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 248s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 248s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] 248s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 248s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 248s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 248s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sessioninfo all 1.2.3-1 [280 kB] 248s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xopen all 1.0.1+dfsg-1 [21.7 kB] 248s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcmdcheck all 1.4.0-3 [208 kB] 248s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-2 [150 kB] 248s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 248s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-fonts-extra all 2024.20250114-1 [624 MB] 284s Preconfiguring packages ... 284s Fetched 1012 MB in 53s (19.1 MB/s) 284s Selecting previously unselected package libisl23:amd64. 284s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 284s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 284s Unpacking libisl23:amd64 (0.27-1) ... 284s Selecting previously unselected package libmpc3:amd64. 284s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 284s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 284s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 284s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 284s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 284s Selecting previously unselected package cpp-14. 284s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 284s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 284s Selecting previously unselected package cpp-x86-64-linux-gnu. 284s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 284s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 285s Selecting previously unselected package cpp. 285s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 285s Unpacking cpp (4:14.2.0-1ubuntu1) ... 285s Selecting previously unselected package libcc1-0:amd64. 285s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 285s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 285s Selecting previously unselected package libgomp1:amd64. 285s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 285s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 285s Selecting previously unselected package libitm1:amd64. 285s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 285s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 285s Selecting previously unselected package libasan8:amd64. 285s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 285s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 285s Selecting previously unselected package liblsan0:amd64. 285s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 285s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 285s Selecting previously unselected package libtsan2:amd64. 285s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 285s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 285s Selecting previously unselected package libubsan1:amd64. 285s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 285s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 285s Selecting previously unselected package libhwasan0:amd64. 285s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 285s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 285s Selecting previously unselected package libquadmath0:amd64. 285s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 285s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 285s Selecting previously unselected package libgcc-14-dev:amd64. 285s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 285s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 285s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 285s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 285s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 285s Selecting previously unselected package gcc-14. 285s 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287s Selecting previously unselected package fonts-glyphicons-halflings. 287s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 287s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 287s Selecting previously unselected package fonts-lmodern. 287s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ... 287s Unpacking fonts-lmodern (2.005-1) ... 287s Selecting previously unselected package fonts-mathjax. 287s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 287s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 287s Selecting previously unselected package libgfortran5:amd64. 287s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 287s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 287s Selecting previously unselected package libgfortran-14-dev:amd64. 287s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 287s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) 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(1.14.5+repack-3) ... 287s Selecting previously unselected package icu-devtools. 287s Preparing to unpack .../043-icu-devtools_76.1-1ubuntu2_amd64.deb ... 287s Unpacking icu-devtools (76.1-1ubuntu2) ... 287s Selecting previously unselected package javascript-common. 287s Preparing to unpack .../044-javascript-common_12_all.deb ... 287s Unpacking javascript-common (12) ... 287s Selecting previously unselected package comerr-dev:amd64. 287s Preparing to unpack .../045-comerr-dev_2.1-1.47.2-1ubuntu1_amd64.deb ... 287s Unpacking comerr-dev:amd64 (2.1-1.47.2-1ubuntu1) ... 287s Selecting previously unselected package libgssrpc4t64:amd64. 287s Preparing to unpack .../046-libgssrpc4t64_1.21.3-4ubuntu2_amd64.deb ... 287s Unpacking libgssrpc4t64:amd64 (1.21.3-4ubuntu2) ... 287s Selecting previously unselected package libkadm5clnt-mit12:amd64. 287s Preparing to unpack .../047-libkadm5clnt-mit12_1.21.3-4ubuntu2_amd64.deb ... 287s Unpacking libkadm5clnt-mit12:amd64 (1.21.3-4ubuntu2) ... 287s Selecting previously unselected package libkdb5-10t64:amd64. 287s Preparing to unpack .../048-libkdb5-10t64_1.21.3-4ubuntu2_amd64.deb ... 287s Unpacking libkdb5-10t64:amd64 (1.21.3-4ubuntu2) ... 288s Selecting previously unselected package libkadm5srv-mit12:amd64. 288s Preparing to unpack .../049-libkadm5srv-mit12_1.21.3-4ubuntu2_amd64.deb ... 288s Unpacking libkadm5srv-mit12:amd64 (1.21.3-4ubuntu2) ... 288s Selecting previously unselected package krb5-multidev:amd64. 288s Preparing to unpack .../050-krb5-multidev_1.21.3-4ubuntu2_amd64.deb ... 288s Unpacking krb5-multidev:amd64 (1.21.3-4ubuntu2) ... 288s Selecting previously unselected package libaec0:amd64. 288s Preparing to unpack .../051-libaec0_1.1.3-1_amd64.deb ... 288s Unpacking libaec0:amd64 (1.1.3-1) ... 288s Selecting previously unselected package libio-string-perl. 288s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 288s Unpacking libio-string-perl (1.08-4) ... 288s Selecting previously unselected package liblatex-tounicode-perl. 288s Preparing to unpack .../053-liblatex-tounicode-perl_0.55-1_all.deb ... 288s Unpacking liblatex-tounicode-perl (0.55-1) ... 288s Selecting previously unselected package libbibtex-parser-perl. 288s Preparing to unpack .../054-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 288s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 288s Selecting previously unselected package libblas3:amd64. 288s Preparing to unpack .../055-libblas3_3.12.1-2_amd64.deb ... 288s Unpacking libblas3:amd64 (3.12.1-2) ... 288s Selecting previously unselected package libblas-dev:amd64. 288s Preparing to unpack .../056-libblas-dev_3.12.1-2_amd64.deb ... 288s Unpacking libblas-dev:amd64 (3.12.1-2) ... 288s Selecting previously unselected package libsnappy1v5:amd64. 288s Preparing to unpack .../057-libsnappy1v5_1.2.1-1_amd64.deb ... 288s Unpacking libsnappy1v5:amd64 (1.2.1-1) ... 288s Selecting previously unselected package libblosc1:amd64. 288s Preparing to unpack .../058-libblosc1_1.21.5+ds-1build1_amd64.deb ... 288s Unpacking libblosc1:amd64 (1.21.5+ds-1build1) ... 288s Selecting previously unselected package libboost1.83-dev:amd64. 288s Preparing to unpack .../059-libboost1.83-dev_1.83.0-4.1ubuntu2_amd64.deb ... 288s Unpacking libboost1.83-dev:amd64 (1.83.0-4.1ubuntu2) ... 290s Selecting previously unselected package libboost-dev:amd64. 290s Preparing to unpack .../060-libboost-dev_1.83.0.2ubuntu1_amd64.deb ... 290s Unpacking libboost-dev:amd64 (1.83.0.2ubuntu1) ... 290s Selecting previously unselected package libbrotli-dev:amd64. 290s Preparing to unpack .../061-libbrotli-dev_1.1.0-2build4_amd64.deb ... 290s Unpacking libbrotli-dev:amd64 (1.1.0-2build4) ... 290s Selecting previously unselected package libbz2-dev:amd64. 290s Preparing to unpack .../062-libbz2-dev_1.0.8-6_amd64.deb ... 290s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 290s Selecting previously unselected package libpixman-1-0:amd64. 290s Preparing to unpack .../063-libpixman-1-0_0.44.0-3_amd64.deb ... 290s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 290s Selecting previously unselected package libxcb-render0:amd64. 290s Preparing to unpack .../064-libxcb-render0_1.17.0-2_amd64.deb ... 290s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 290s Selecting previously unselected package libxcb-shm0:amd64. 290s Preparing to unpack .../065-libxcb-shm0_1.17.0-2_amd64.deb ... 290s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 290s Selecting previously unselected package libxrender1:amd64. 290s Preparing to unpack .../066-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 290s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 290s Selecting previously unselected package libcairo2:amd64. 290s Preparing to unpack .../067-libcairo2_1.18.2-2_amd64.deb ... 290s Unpacking libcairo2:amd64 (1.18.2-2) ... 290s Selecting previously unselected package libidn2-dev:amd64. 290s Preparing to unpack .../068-libidn2-dev_2.3.7-2build2_amd64.deb ... 290s Unpacking libidn2-dev:amd64 (2.3.7-2build2) ... 290s Selecting previously unselected package libkrb5-dev:amd64. 290s Preparing to unpack .../069-libkrb5-dev_1.21.3-4ubuntu2_amd64.deb ... 290s Unpacking libkrb5-dev:amd64 (1.21.3-4ubuntu2) ... 290s Selecting previously unselected package libldap-dev:amd64. 290s Preparing to unpack .../070-libldap-dev_2.6.9+dfsg-1~exp2ubuntu1_amd64.deb ... 290s Unpacking libldap-dev:amd64 (2.6.9+dfsg-1~exp2ubuntu1) ... 290s Selecting previously unselected package libpkgconf3:amd64. 290s Preparing to unpack .../071-libpkgconf3_1.8.1-4_amd64.deb ... 290s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 290s Selecting previously unselected package pkgconf-bin. 290s Preparing to unpack .../072-pkgconf-bin_1.8.1-4_amd64.deb ... 290s Unpacking pkgconf-bin (1.8.1-4) ... 290s Selecting previously unselected package pkgconf:amd64. 290s Preparing to unpack .../073-pkgconf_1.8.1-4_amd64.deb ... 290s Unpacking pkgconf:amd64 (1.8.1-4) ... 290s Selecting previously unselected package libnghttp2-dev:amd64. 290s Preparing to unpack .../074-libnghttp2-dev_1.64.0-1_amd64.deb ... 290s Unpacking libnghttp2-dev:amd64 (1.64.0-1) ... 290s Selecting previously unselected package libpsl-dev:amd64. 290s Preparing to unpack .../075-libpsl-dev_0.21.2-1.1build1_amd64.deb ... 290s Unpacking libpsl-dev:amd64 (0.21.2-1.1build1) ... 290s Selecting previously unselected package libgmpxx4ldbl:amd64. 290s Preparing to unpack .../076-libgmpxx4ldbl_2%3a6.3.0+dfsg-3ubuntu1_amd64.deb ... 290s Unpacking libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3ubuntu1) ... 290s Selecting previously unselected package libgmp-dev:amd64. 291s Preparing to unpack .../077-libgmp-dev_2%3a6.3.0+dfsg-3ubuntu1_amd64.deb ... 291s Unpacking libgmp-dev:amd64 (2:6.3.0+dfsg-3ubuntu1) ... 291s Selecting previously unselected package libevent-2.1-7t64:amd64. 291s Preparing to unpack .../078-libevent-2.1-7t64_2.1.12-stable-10_amd64.deb ... 291s Unpacking libevent-2.1-7t64:amd64 (2.1.12-stable-10) ... 291s Selecting previously unselected package libunbound8:amd64. 291s Preparing to unpack .../079-libunbound8_1.22.0-1ubuntu1_amd64.deb ... 291s Unpacking libunbound8:amd64 (1.22.0-1ubuntu1) ... 291s Selecting previously unselected package libgnutls-dane0t64:amd64. 291s Preparing to unpack .../080-libgnutls-dane0t64_3.8.9-2ubuntu2_amd64.deb ... 291s Unpacking libgnutls-dane0t64:amd64 (3.8.9-2ubuntu2) ... 291s Selecting previously unselected package libgnutls-openssl27t64:amd64. 291s Preparing to unpack .../081-libgnutls-openssl27t64_3.8.9-2ubuntu2_amd64.deb ... 291s Unpacking libgnutls-openssl27t64:amd64 (3.8.9-2ubuntu2) ... 291s Selecting previously unselected package libp11-kit-dev:amd64. 291s Preparing to unpack .../082-libp11-kit-dev_0.25.5-2ubuntu3_amd64.deb ... 291s Unpacking libp11-kit-dev:amd64 (0.25.5-2ubuntu3) ... 291s Selecting previously unselected package libtasn1-6-dev:amd64. 291s Preparing to unpack .../083-libtasn1-6-dev_4.20.0-2_amd64.deb ... 291s Unpacking libtasn1-6-dev:amd64 (4.20.0-2) ... 291s Selecting previously unselected package nettle-dev:amd64. 291s Preparing to unpack .../084-nettle-dev_3.10.1-1_amd64.deb ... 291s Unpacking nettle-dev:amd64 (3.10.1-1) ... 291s Selecting previously unselected package libgnutls28-dev:amd64. 291s Preparing to unpack .../085-libgnutls28-dev_3.8.9-2ubuntu2_amd64.deb ... 291s Unpacking libgnutls28-dev:amd64 (3.8.9-2ubuntu2) ... 291s Selecting previously unselected package zlib1g-dev:amd64. 291s Preparing to unpack .../086-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 291s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 291s Selecting previously unselected package librtmp-dev:amd64. 291s Preparing to unpack .../087-librtmp-dev_2.4+20151223.gitfa8646d.1-2build7_amd64.deb ... 291s Unpacking librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2build7) ... 291s Selecting previously unselected package libssl-dev:amd64. 291s Preparing to unpack .../088-libssl-dev_3.4.1-1ubuntu1_amd64.deb ... 291s Unpacking libssl-dev:amd64 (3.4.1-1ubuntu1) ... 291s Selecting previously unselected package libssh2-1-dev:amd64. 291s Preparing to unpack .../089-libssh2-1-dev_1.11.1-1_amd64.deb ... 291s Unpacking libssh2-1-dev:amd64 (1.11.1-1) ... 291s Selecting previously unselected package libzstd-dev:amd64. 291s Preparing to unpack .../090-libzstd-dev_1.5.6+dfsg-2_amd64.deb ... 291s Unpacking libzstd-dev:amd64 (1.5.6+dfsg-2) ... 291s Selecting previously unselected package libcurl4-openssl-dev:amd64. 291s Preparing to unpack .../091-libcurl4-openssl-dev_8.12.1-3ubuntu1_amd64.deb ... 291s Unpacking libcurl4-openssl-dev:amd64 (8.12.1-3ubuntu1) ... 291s Selecting previously unselected package libdatrie1:amd64. 291s Preparing to unpack .../092-libdatrie1_0.2.13-3build1_amd64.deb ... 291s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 291s Selecting previously unselected package libdeflate0:amd64. 291s Preparing to unpack .../093-libdeflate0_1.23-1_amd64.deb ... 291s Unpacking libdeflate0:amd64 (1.23-1) ... 291s Selecting previously unselected package libdeflate-dev:amd64. 291s Preparing to unpack .../094-libdeflate-dev_1.23-1_amd64.deb ... 291s Unpacking libdeflate-dev:amd64 (1.23-1) ... 291s Selecting previously unselected package libgraphite2-3:amd64. 291s Preparing to unpack .../095-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 291s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 291s Selecting previously unselected package libharfbuzz0b:amd64. 291s Preparing to unpack .../096-libharfbuzz0b_10.2.0-1_amd64.deb ... 291s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 291s Selecting previously unselected package libsz2:amd64. 291s Preparing to unpack .../097-libsz2_1.1.3-1_amd64.deb ... 291s Unpacking libsz2:amd64 (1.1.3-1) ... 291s Selecting previously unselected package libhdf5-310:amd64. 291s Preparing to unpack .../098-libhdf5-310_1.14.5+repack-3_amd64.deb ... 291s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... 291s Selecting previously unselected package libhdf5-cpp-310:amd64. 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292s Selecting previously unselected package libjpeg-turbo8:amd64. 292s Preparing to unpack .../104-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 292s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 292s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 292s Preparing to unpack .../105-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ... 292s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 292s Selecting previously unselected package libjpeg8:amd64. 292s Preparing to unpack .../106-libjpeg8_8c-2ubuntu11_amd64.deb ... 292s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 292s Selecting previously unselected package libjpeg8-dev:amd64. 292s Preparing to unpack .../107-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 292s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 292s Selecting previously unselected package libjpeg-dev:amd64. 292s Preparing to unpack .../108-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 292s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 292s Selecting previously unselected package libaec-dev:amd64. 292s Preparing to unpack .../109-libaec-dev_1.1.3-1_amd64.deb ... 292s Unpacking libaec-dev:amd64 (1.1.3-1) ... 292s Selecting previously unselected package libhdf5-dev. 292s Preparing to unpack .../110-libhdf5-dev_1.14.5+repack-3_amd64.deb ... 292s Unpacking libhdf5-dev (1.14.5+repack-3) ... 292s Selecting previously unselected package libhnswlib-dev. 292s Preparing to unpack .../111-libhnswlib-dev_0.8.0-1build3_all.deb ... 292s Unpacking libhnswlib-dev (0.8.0-1build3) ... 292s Selecting previously unselected package x11-common. 292s Preparing to unpack .../112-x11-common_1%3a7.7+23ubuntu3_all.deb ... 292s Unpacking x11-common (1:7.7+23ubuntu3) ... 292s Selecting previously unselected package libice6:amd64. 292s Preparing to unpack .../113-libice6_2%3a1.1.1-1_amd64.deb ... 292s Unpacking libice6:amd64 (2:1.1.1-1) ... 292s Selecting previously unselected package libicu-dev:amd64. 292s Preparing to unpack .../114-libicu-dev_76.1-1ubuntu2_amd64.deb 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unpack .../130-libkpathsea6_2024.20240313.70630+ds-6_amd64.deb ... 293s Unpacking libkpathsea6:amd64 (2024.20240313.70630+ds-6) ... 293s Selecting previously unselected package liblapack3:amd64. 293s Preparing to unpack .../131-liblapack3_3.12.1-2_amd64.deb ... 293s Unpacking liblapack3:amd64 (3.12.1-2) ... 293s Selecting previously unselected package liblapack-dev:amd64. 293s Preparing to unpack .../132-liblapack-dev_3.12.1-2_amd64.deb ... 293s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 293s Selecting previously unselected package liblerc4:amd64. 293s Preparing to unpack .../133-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 293s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 293s Selecting previously unselected package liblua5.4-0:amd64. 293s Preparing to unpack .../134-liblua5.4-0_5.4.7-1_amd64.deb ... 293s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 293s Selecting previously unselected package libmpfi0:amd64. 293s Preparing to unpack .../135-libmpfi0_1.5.4+ds-4_amd64.deb ... 293s 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Selecting previously unselected package libpangocairo-1.0-0:amd64. 294s Preparing to unpack .../141-libpangocairo-1.0-0_1.56.2-1_amd64.deb ... 294s Unpacking libpangocairo-1.0-0:amd64 (1.56.2-1) ... 294s Selecting previously unselected package libpaper2:amd64. 294s Preparing to unpack .../142-libpaper2_2.2.5-0.3_amd64.deb ... 294s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 294s Selecting previously unselected package libpaper-utils. 294s Preparing to unpack .../143-libpaper-utils_2.2.5-0.3_amd64.deb ... 294s Unpacking libpaper-utils (2.2.5-0.3) ... 294s Selecting previously unselected package libpcre2-16-0:amd64. 294s Preparing to unpack .../144-libpcre2-16-0_10.45-1_amd64.deb ... 294s Unpacking libpcre2-16-0:amd64 (10.45-1) ... 294s Selecting previously unselected package libpcre2-32-0:amd64. 294s Preparing to unpack .../145-libpcre2-32-0_10.45-1_amd64.deb ... 294s Unpacking libpcre2-32-0:amd64 (10.45-1) ... 294s Selecting previously unselected package libpcre2-posix3:amd64. 294s 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.../151-libreadline-dev_8.2-6_amd64.deb ... 294s Unpacking libreadline-dev:amd64 (8.2-6) ... 294s Selecting previously unselected package libsharpyuv0:amd64. 294s Preparing to unpack .../152-libsharpyuv0_1.5.0-0.1_amd64.deb ... 294s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 294s Selecting previously unselected package libsm6:amd64. 294s Preparing to unpack .../153-libsm6_2%3a1.2.4-1_amd64.deb ... 294s Unpacking libsm6:amd64 (2:1.2.4-1) ... 294s Selecting previously unselected package libsynctex2:amd64. 294s Preparing to unpack .../154-libsynctex2_2024.20240313.70630+ds-6_amd64.deb ... 294s Unpacking libsynctex2:amd64 (2024.20240313.70630+ds-6) ... 294s Selecting previously unselected package libtcl8.6:amd64. 294s Preparing to unpack .../155-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 294s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 294s Selecting previously unselected package libteckit0:amd64. 294s Preparing to unpack .../156-libteckit0_2.5.12+ds1-1_amd64.deb ... 294s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 294s Selecting previously unselected package libtexlua53-5:amd64. 294s Preparing to unpack .../157-libtexlua53-5_2024.20240313.70630+ds-6_amd64.deb ... 294s Unpacking libtexlua53-5:amd64 (2024.20240313.70630+ds-6) ... 294s Selecting previously unselected package libjbig0:amd64. 294s Preparing to unpack .../158-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 294s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 294s Selecting previously unselected package libwebp7:amd64. 294s Preparing to unpack .../159-libwebp7_1.5.0-0.1_amd64.deb ... 294s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 294s Selecting previously unselected package libtiff6:amd64. 294s Preparing to unpack .../160-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 294s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 295s Selecting previously unselected package libxft2:amd64. 295s Preparing to unpack .../161-libxft2_2.3.6-1build1_amd64.deb ... 295s Unpacking libxft2:amd64 (2.3.6-1build1) ... 295s Selecting previously unselected package libxss1:amd64. 295s Preparing to unpack .../162-libxss1_1%3a1.2.3-1build3_amd64.deb ... 295s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 295s Selecting previously unselected package libtk8.6:amd64. 295s Preparing to unpack .../163-libtk8.6_8.6.16-1_amd64.deb ... 295s Unpacking libtk8.6:amd64 (8.6.16-1) ... 295s Selecting previously unselected package libxt6t64:amd64. 295s Preparing to unpack .../164-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 295s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 295s Selecting previously unselected package libxmu6:amd64. 295s Preparing to unpack .../165-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 295s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 295s Selecting previously unselected package libxpm4:amd64. 295s Preparing to unpack .../166-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 295s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 295s Selecting previously unselected package libxaw7:amd64. 295s Preparing to unpack .../167-libxaw7_2%3a1.0.16-1_amd64.deb ... 295s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 295s Selecting previously unselected package libxi6:amd64. 295s Preparing to unpack .../168-libxi6_2%3a1.8.2-1_amd64.deb ... 295s Unpacking libxi6:amd64 (2:1.8.2-1) ... 295s Selecting previously unselected package libzzip-0-13t64:amd64. 295s Preparing to unpack .../169-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 295s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 295s Selecting previously unselected package zip. 295s Preparing to unpack .../170-zip_3.0-14ubuntu2_amd64.deb ... 295s Unpacking zip (3.0-14ubuntu2) ... 295s Selecting previously unselected package unzip. 295s Preparing to unpack .../171-unzip_6.0-28ubuntu6_amd64.deb ... 295s Unpacking unzip (6.0-28ubuntu6) ... 295s Selecting previously unselected package xdg-utils. 295s Preparing to unpack .../172-xdg-utils_1.2.1-2ubuntu1_all.deb ... 295s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 295s Selecting previously unselected package r-base-core. 295s Preparing to unpack .../173-r-base-core_4.4.3-1_amd64.deb ... 295s Unpacking r-base-core (4.4.3-1) ... 295s Selecting previously unselected package r-cran-littler. 295s Preparing to unpack .../174-r-cran-littler_0.3.20-2_amd64.deb ... 295s Unpacking r-cran-littler (0.3.20-2) ... 295s Selecting previously unselected package littler. 295s Preparing to unpack .../175-littler_0.3.20-2_all.deb ... 295s Unpacking littler (0.3.20-2) ... 295s Selecting previously unselected package node-bootstrap-sass. 295s Preparing to unpack .../176-node-bootstrap-sass_3.4.3-2_all.deb ... 295s Unpacking node-bootstrap-sass (3.4.3-2) ... 296s Selecting previously unselected package node-html5shiv. 296s Preparing to unpack .../177-node-html5shiv_3.7.3+dfsg-5_all.deb ... 296s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 296s Selecting previously unselected package node-normalize.css. 296s Preparing to unpack .../178-node-normalize.css_8.0.1-5_all.deb ... 296s Unpacking node-normalize.css (8.0.1-5) ... 296s Selecting previously unselected package pandoc-data. 296s Preparing to unpack .../179-pandoc-data_3.1.11.1-3build1_all.deb ... 296s Unpacking pandoc-data (3.1.11.1-3build1) ... 296s Selecting previously unselected package pandoc. 296s Preparing to unpack .../180-pandoc_3.1.11.1+ds-2_amd64.deb ... 296s Unpacking pandoc (3.1.11.1+ds-2) ... 297s Selecting previously unselected package liblzma-dev:amd64. 297s Preparing to unpack .../181-liblzma-dev_5.6.4-1_amd64.deb ... 297s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 297s Selecting previously unselected package libtirpc-dev:amd64. 297s Preparing to unpack .../182-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 297s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 297s Selecting previously unselected package r-base-dev. 297s Preparing to unpack .../183-r-base-dev_4.4.3-1_all.deb ... 297s Unpacking r-base-dev (4.4.3-1) ... 297s Selecting previously unselected package pkg-r-autopkgtest. 297s Preparing to unpack .../184-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 297s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 297s Selecting previously unselected package r-bioc-biocgenerics. 297s Preparing to unpack .../185-r-bioc-biocgenerics_0.52.0-2_all.deb ... 297s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 297s Selecting previously unselected package r-bioc-assorthead. 297s Preparing to unpack .../186-r-bioc-assorthead_1.0.1+ds-2_all.deb ... 297s Unpacking r-bioc-assorthead (1.0.1+ds-2) ... 297s Selecting previously unselected package r-cran-lattice. 297s Preparing to unpack .../187-r-cran-lattice_0.22-6-1_amd64.deb ... 297s Unpacking r-cran-lattice (0.22-6-1) ... 297s Selecting previously unselected package r-cran-matrix. 297s Preparing to unpack .../188-r-cran-matrix_1.7-3-1_amd64.deb ... 297s Unpacking r-cran-matrix (1.7-3-1) ... 297s Selecting previously unselected package r-cran-matrixstats. 297s Preparing to unpack .../189-r-cran-matrixstats_1.5.0-1_amd64.deb ... 297s Unpacking r-cran-matrixstats (1.5.0-1) ... 297s Selecting previously unselected package r-bioc-matrixgenerics. 297s Preparing to unpack .../190-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 297s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 297s Selecting previously unselected package r-bioc-s4vectors. 297s Preparing to unpack .../191-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 297s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 297s Selecting previously unselected package r-bioc-iranges. 297s Preparing to unpack .../192-r-bioc-iranges_2.40.1-2_amd64.deb ... 297s Unpacking r-bioc-iranges (2.40.1-2) ... 297s Selecting previously unselected package r-cran-abind. 297s Preparing to unpack .../193-r-cran-abind_1.4-8-1_all.deb ... 297s Unpacking r-cran-abind (1.4-8-1) ... 297s Selecting previously unselected package r-cran-crayon. 297s Preparing to unpack .../194-r-cran-crayon_1.5.3-1_all.deb ... 297s Unpacking r-cran-crayon (1.5.3-1) ... 297s Selecting previously unselected package r-bioc-s4arrays. 297s Preparing to unpack .../195-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 297s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 297s Selecting previously unselected package r-bioc-zlibbioc. 297s Preparing to unpack .../196-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 297s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 297s Selecting previously unselected package r-bioc-xvector. 297s Preparing to unpack .../197-r-bioc-xvector_0.46.0-2_amd64.deb ... 297s Unpacking r-bioc-xvector (0.46.0-2) ... 297s Selecting previously unselected package r-bioc-sparsearray. 297s Preparing to unpack .../198-r-bioc-sparsearray_1.6.2+dfsg-1_amd64.deb ... 297s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 297s Selecting previously unselected package r-bioc-delayedarray. 297s Preparing to unpack .../199-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 297s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 298s Selecting previously unselected package r-cran-pkgkitten. 298s Preparing to unpack .../200-r-cran-pkgkitten_0.2.4-1_all.deb ... 298s Unpacking r-cran-pkgkitten (0.2.4-1) ... 298s Selecting previously unselected package r-cran-rcpp. 298s Preparing to unpack .../201-r-cran-rcpp_1.0.14-1_amd64.deb ... 298s Unpacking r-cran-rcpp (1.0.14-1) ... 298s Selecting previously unselected package r-bioc-beachmat. 298s Preparing to unpack .../202-r-bioc-beachmat_2.22.0+ds-2_amd64.deb ... 298s Unpacking r-bioc-beachmat (2.22.0+ds-2) ... 298s Selecting previously unselected package r-cran-formatr. 298s Preparing to unpack .../203-r-cran-formatr_1.14-2_all.deb ... 298s Unpacking r-cran-formatr (1.14-2) ... 298s Selecting previously unselected package r-cran-lambda.r. 298s Preparing to unpack .../204-r-cran-lambda.r_1.2.4-2build1_all.deb ... 298s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 298s Selecting previously unselected package r-cran-futile.options. 298s Preparing to unpack .../205-r-cran-futile.options_1.0.1-3build1_all.deb ... 298s Unpacking r-cran-futile.options (1.0.1-3build1) ... 298s Selecting previously unselected package r-cran-futile.logger. 298s Preparing to unpack .../206-r-cran-futile.logger_1.4.3-4build1_all.deb ... 298s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 298s Selecting previously unselected package r-cran-snow. 298s Preparing to unpack .../207-r-cran-snow_1%3a0.4.4-2_all.deb ... 298s Unpacking r-cran-snow (1:0.4.4-2) ... 298s Selecting previously unselected package r-cran-codetools. 298s Preparing to unpack .../208-r-cran-codetools_0.2-20-1_all.deb ... 298s Unpacking r-cran-codetools (0.2-20-1) ... 298s Selecting previously unselected package r-cran-bh. 298s Preparing to unpack .../209-r-cran-bh_1.84.0-1_all.deb ... 298s Unpacking r-cran-bh (1.84.0-1) ... 298s Selecting previously unselected package r-cran-cpp11. 298s Preparing to unpack .../210-r-cran-cpp11_0.5.2-1_all.deb ... 298s Unpacking r-cran-cpp11 (0.5.2-1) ... 298s Selecting previously unselected package r-bioc-biocparallel. 298s Preparing to unpack .../211-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 298s Unpacking r-bioc-biocparallel (1.40.0-2) ... 298s Selecting previously unselected package r-cran-base64enc. 298s Preparing to unpack .../212-r-cran-base64enc_0.1-3-3_amd64.deb ... 298s Unpacking r-cran-base64enc (0.1-3-3) ... 298s Selecting previously unselected package r-cran-digest. 298s Preparing to unpack .../213-r-cran-digest_0.6.37-1_amd64.deb ... 298s Unpacking r-cran-digest (0.6.37-1) ... 298s Selecting previously unselected package r-cran-fastmap. 298s Preparing to unpack .../214-r-cran-fastmap_1.2.0-1_amd64.deb ... 298s Unpacking r-cran-fastmap (1.2.0-1) ... 298s Selecting previously unselected package r-cran-rlang. 298s Preparing to unpack .../215-r-cran-rlang_1.1.5-1_amd64.deb ... 298s Unpacking r-cran-rlang (1.1.5-1) ... 298s Selecting previously unselected package r-cran-htmltools. 298s Preparing to unpack .../216-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 298s Unpacking r-cran-htmltools (0.5.8.1-1) ... 298s Selecting previously unselected package r-cran-evaluate. 298s Preparing to unpack .../217-r-cran-evaluate_1.0.3-1_all.deb ... 298s Unpacking r-cran-evaluate (1.0.3-1) ... 298s Selecting previously unselected package r-cran-xfun. 298s Preparing to unpack .../218-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 298s Unpacking r-cran-xfun (0.51+dfsg-1) ... 298s Selecting previously unselected package r-cran-highr. 299s Preparing to unpack .../219-r-cran-highr_0.11+dfsg-1_all.deb ... 299s Unpacking r-cran-highr (0.11+dfsg-1) ... 299s Selecting previously unselected package r-cran-yaml. 299s Preparing to unpack .../220-r-cran-yaml_2.3.10-1_amd64.deb ... 299s Unpacking r-cran-yaml (2.3.10-1) ... 299s Selecting previously unselected package libjs-mathjax. 299s Preparing to unpack .../221-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 299s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 299s Selecting previously unselected package r-cran-knitr. 299s Preparing to unpack .../222-r-cran-knitr_1.49+dfsg-1_all.deb ... 299s Unpacking r-cran-knitr (1.49+dfsg-1) ... 299s Selecting previously unselected package r-cran-cachem. 299s Preparing to unpack .../223-r-cran-cachem_1.1.0-1_amd64.deb ... 299s Unpacking r-cran-cachem (1.1.0-1) ... 299s Selecting previously unselected package r-cran-jquerylib. 299s Preparing to unpack .../224-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 299s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 299s Selecting previously unselected package r-cran-jsonlite. 299s Preparing to unpack .../225-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 299s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 299s Selecting previously unselected package r-cran-cli. 299s Preparing to unpack .../226-r-cran-cli_3.6.4-1_amd64.deb ... 299s Unpacking r-cran-cli (3.6.4-1) ... 300s Selecting previously unselected package r-cran-glue. 300s Preparing to unpack .../227-r-cran-glue_1.8.0-1_amd64.deb ... 300s Unpacking r-cran-glue (1.8.0-1) ... 300s Selecting previously unselected package r-cran-lifecycle. 300s Preparing to unpack .../228-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 300s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 300s Selecting previously unselected package r-cran-memoise. 300s Preparing to unpack .../229-r-cran-memoise_2.0.1-1_all.deb ... 300s Unpacking r-cran-memoise (2.0.1-1) ... 300s Selecting previously unselected package r-cran-mime. 300s Preparing to unpack .../230-r-cran-mime_0.12-2_amd64.deb ... 300s Unpacking r-cran-mime (0.12-2) ... 300s Selecting previously unselected package r-cran-fs. 300s Preparing to unpack .../231-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 300s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 300s Selecting previously unselected package r-cran-r6. 300s Preparing to unpack .../232-r-cran-r6_2.6.1-1_all.deb ... 300s Unpacking r-cran-r6 (2.6.1-1) ... 300s Selecting previously unselected package r-cran-rappdirs. 300s Preparing to unpack .../233-r-cran-rappdirs_0.3.3-1_amd64.deb ... 300s Unpacking r-cran-rappdirs (0.3.3-1) ... 300s Selecting previously unselected package r-cran-sass. 300s Preparing to unpack .../234-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 300s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 300s Selecting previously unselected package r-cran-bslib. 300s Preparing to unpack .../235-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 300s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 300s Selecting previously unselected package r-cran-fontawesome. 300s Preparing to unpack .../236-r-cran-fontawesome_0.5.3-1_all.deb ... 300s Unpacking r-cran-fontawesome (0.5.3-1) ... 300s Selecting previously unselected package r-cran-tinytex. 300s Preparing to unpack .../237-r-cran-tinytex_0.56-1_all.deb ... 300s Unpacking r-cran-tinytex (0.56-1) ... 300s Selecting previously unselected package libjs-modernizr. 300s Preparing to unpack .../238-libjs-modernizr_3.13.0-0.1_all.deb ... 300s Unpacking libjs-modernizr (3.13.0-0.1) ... 300s Selecting previously unselected package r-cran-later. 300s Preparing to unpack .../239-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 300s Unpacking r-cran-later (1.4.1+dfsg-1) ... 300s Selecting previously unselected package r-cran-magrittr. 300s Preparing to unpack .../240-r-cran-magrittr_2.0.3-1_amd64.deb ... 300s Unpacking r-cran-magrittr (2.0.3-1) ... 300s Selecting previously unselected package r-cran-promises. 300s Preparing to unpack .../241-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 300s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 300s Selecting previously unselected package r-cran-httpuv. 300s Preparing to unpack .../242-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 300s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 300s Selecting previously unselected package r-cran-xtable. 300s Preparing to unpack .../243-r-cran-xtable_1%3a1.8-4-2_all.deb ... 300s Unpacking r-cran-xtable (1:1.8-4-2) ... 300s Selecting previously unselected package r-cran-sourcetools. 300s Preparing to unpack .../244-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 300s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 300s Selecting previously unselected package r-cran-withr. 301s Preparing to unpack .../245-r-cran-withr_3.0.2+dfsg-1_all.deb ... 301s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 301s Selecting previously unselected package r-cran-commonmark. 301s Preparing to unpack .../246-r-cran-commonmark_1.9.2-2_amd64.deb ... 301s Unpacking r-cran-commonmark (1.9.2-2) ... 301s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 301s Preparing to unpack .../247-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 301s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 301s Selecting previously unselected package r-cran-shiny. 301s Preparing to unpack .../248-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 301s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 301s Selecting previously unselected package r-cran-rmarkdown. 301s Preparing to unpack .../249-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 301s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 301s Selecting previously unselected package r-cran-bookdown. 301s Preparing to unpack .../250-r-cran-bookdown_0.42+dfsg-1_all.deb ... 301s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 301s Selecting previously unselected package r-cran-biocmanager. 301s Preparing to unpack .../251-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 301s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 301s Selecting previously unselected package tex-common. 301s Preparing to unpack .../252-tex-common_6.19_all.deb ... 301s Unpacking tex-common (6.19) ... 301s Selecting previously unselected package t1utils. 301s Preparing to unpack .../253-t1utils_1.41-4build3_amd64.deb ... 301s Unpacking t1utils (1.41-4build3) ... 301s Selecting previously unselected package texlive-binaries. 301s Preparing to unpack .../254-texlive-binaries_2024.20240313.70630+ds-6_amd64.deb ... 301s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ... 301s Selecting previously unselected package texlive-base. 301s Preparing to unpack .../255-texlive-base_2024.20250114-1_all.deb ... 301s Unpacking texlive-base (2024.20250114-1) ... 302s Selecting previously unselected package texlive-latex-base. 302s Preparing to unpack .../256-texlive-latex-base_2024.20250114-1_all.deb ... 302s Unpacking texlive-latex-base (2024.20250114-1) ... 303s Selecting previously unselected package texlive-bibtex-extra. 303s Preparing to unpack .../257-texlive-bibtex-extra_2024.20250114-1_all.deb ... 303s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 304s Selecting previously unselected package r-bioc-biocversion. 304s Preparing to unpack .../258-r-bioc-biocversion_3.20.0-2_all.deb ... 304s Unpacking r-bioc-biocversion (3.20.0-2) ... 304s Selecting previously unselected package r-bioc-biocstyle. 304s Preparing to unpack .../259-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 304s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 304s Selecting previously unselected package r-bioc-rhdf5lib. 304s Preparing to unpack .../260-r-bioc-rhdf5lib_1.28.0+dfsg-2build1_amd64.deb ... 304s Unpacking r-bioc-rhdf5lib (1.28.0+dfsg-2build1) ... 304s Selecting previously unselected package r-bioc-rhdf5filters. 304s Preparing to unpack .../261-r-bioc-rhdf5filters_1.18.0+dfsg-2_amd64.deb ... 304s Unpacking r-bioc-rhdf5filters (1.18.0+dfsg-2) ... 304s Selecting previously unselected package r-bioc-rhdf5. 304s Preparing to unpack .../262-r-bioc-rhdf5_2.50.2+dfsg-1build1_amd64.deb ... 304s Unpacking r-bioc-rhdf5 (2.50.2+dfsg-1build1) ... 304s Selecting previously unselected package r-bioc-hdf5array. 304s Preparing to unpack .../263-r-bioc-hdf5array_1.34.0-2build1_amd64.deb ... 304s Unpacking r-bioc-hdf5array (1.34.0-2build1) ... 304s Selecting previously unselected package r-cran-brio. 304s Preparing to unpack .../264-r-cran-brio_1.1.5-1_amd64.deb ... 304s Unpacking r-cran-brio (1.1.5-1) ... 304s Selecting previously unselected package r-cran-ps. 304s Preparing to unpack .../265-r-cran-ps_1.9.0-1_amd64.deb ... 304s Unpacking r-cran-ps (1.9.0-1) ... 304s Selecting previously unselected package r-cran-processx. 304s Preparing to unpack .../266-r-cran-processx_3.8.6-1_amd64.deb ... 304s Unpacking r-cran-processx (3.8.6-1) ... 304s Selecting previously unselected package r-cran-callr. 304s Preparing to unpack .../267-r-cran-callr_3.7.6-1_all.deb ... 304s Unpacking r-cran-callr (3.7.6-1) ... 304s Selecting previously unselected package r-cran-curl. 304s Preparing to unpack .../268-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 304s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 304s Selecting previously unselected package r-cran-desc. 304s Preparing to unpack .../269-r-cran-desc_1.4.3-1_all.deb ... 304s Unpacking r-cran-desc (1.4.3-1) ... 305s Selecting previously unselected package r-cran-diffobj. 305s Preparing to unpack .../270-r-cran-diffobj_0.3.5-1_amd64.deb ... 305s Unpacking r-cran-diffobj (0.3.5-1) ... 305s Selecting previously unselected package r-cran-pkgbuild. 305s Preparing to unpack .../271-r-cran-pkgbuild_1.4.6-1_all.deb ... 305s Unpacking r-cran-pkgbuild (1.4.6-1) ... 305s Selecting previously unselected package r-cran-rprojroot. 305s Preparing to unpack .../272-r-cran-rprojroot_2.0.4-2_all.deb ... 305s Unpacking r-cran-rprojroot (2.0.4-2) ... 305s Selecting previously unselected package r-cran-pkgload. 305s Preparing to unpack .../273-r-cran-pkgload_1.4.0-1_all.deb ... 305s Unpacking r-cran-pkgload (1.4.0-1) ... 305s Selecting previously unselected package r-cran-praise. 305s Preparing to unpack .../274-r-cran-praise_1.0.0-4build1_all.deb ... 305s Unpacking r-cran-praise (1.0.0-4build1) ... 305s Selecting previously unselected package r-cran-prettyunits. 305s Preparing to unpack .../275-r-cran-prettyunits_1.2.0-1_all.deb ... 305s Unpacking r-cran-prettyunits (1.2.0-1) ... 305s Selecting previously unselected package r-cran-sessioninfo. 305s Preparing to unpack .../276-r-cran-sessioninfo_1.2.3-1_all.deb ... 305s Unpacking r-cran-sessioninfo (1.2.3-1) ... 305s Selecting previously unselected package r-cran-xopen. 305s Preparing to unpack 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(2.13.0-1) ... 335s Processing triggers for install-info (7.1.1-1) ... 335s Processing triggers for tex-common (6.19) ... 339s Running updmap-sys. This may take some time... done. 339s Running mktexlsr /var/lib/texmf ... done. 339s Building format(s) --all. 371s This may take some time... done. 372s autopkgtest [22:02:59]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 372s autopkgtest [22:02:59]: test pkg-r-autopkgtest: [----------------------- 372s Test: Try to load the R library beachmat 372s 372s R version 4.4.3 (2025-02-28) -- "Trophy Case" 372s Copyright (C) 2025 The R Foundation for Statistical Computing 372s Platform: x86_64-pc-linux-gnu 372s 372s R is free software and comes with ABSOLUTELY NO WARRANTY. 372s You are welcome to redistribute it under certain conditions. 372s Type 'license()' or 'licence()' for distribution details. 372s 372s R is a collaborative project with many contributors. 372s Type 'contributors()' for more information and 372s 'citation()' on how to cite R or R packages in publications. 372s 372s Type 'demo()' for some demos, 'help()' for on-line help, or 372s 'help.start()' for an HTML browser interface to help. 372s Type 'q()' to quit R. 372s 372s > library('beachmat') 376s > 376s > 376s Other tests are currently unsupported! 376s They will be progressively added. 377s autopkgtest [22:03:04]: test pkg-r-autopkgtest: -----------------------] 377s autopkgtest [22:03:04]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 377s pkg-r-autopkgtest PASS 378s autopkgtest [22:03:05]: @@@@@@@@@@@@@@@@@@@@ summary 378s pkg-r-autopkgtest PASS 382s nova [W] Skipping flock for amd64 382s Creating nova instance adt-plucky-amd64-r-bioc-beachmat-20250315-215646-juju-7f2275-prod-proposed-migration-environment-15-23b50129-9f94-4697-acf1-c1b441ca4bc7 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 382s nova [W] Timed out waiting for 3c2675bd-e360-4dbf-b462-b7f1488109e5 to get deleted.