0s autopkgtest [21:56:46]: starting date and time: 2025-03-15 21:56:46+0000 0s autopkgtest [21:56:46]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [21:56:46]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.yuw75ndc/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-alabaster.matrix --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-24.secgroup --name adt-plucky-amd64-r-bioc-alabaster.matrix-20250315-215646-juju-7f2275-prod-proposed-migration-environment-20-eb58b0d9-43b2-4406-bbdc-12df5c4c5811 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 45s autopkgtest [21:57:31]: testbed dpkg architecture: amd64 45s autopkgtest [21:57:31]: testbed apt version: 2.9.31ubuntu1 46s autopkgtest [21:57:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup 46s autopkgtest [21:57:32]: testbed release detected to be: None 47s autopkgtest [21:57:33]: updating testbed package index (apt update) 47s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 47s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 47s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 47s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 47s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 48s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 48s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 48s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 48s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 48s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 48s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 48s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 48s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 48s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 48s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 48s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 48s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 48s Fetched 1265 kB in 1s (1324 kB/s) 49s Reading package lists... 50s Reading package lists... 50s Building dependency tree... 50s Reading state information... 50s Calculating upgrade... 50s Calculating upgrade... 51s The following package was automatically installed and is no longer required: 51s libnl-genl-3-200 51s Use 'sudo apt autoremove' to remove it. 51s The following NEW packages will be installed: 51s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 51s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 51s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 51s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 51s The following packages will be upgraded: 51s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 51s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 51s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 51s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 51s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 51s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 51s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 51s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 51s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 51s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 51s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 51s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 51s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 51s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 51s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 51s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 51s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 51s parted pci.ids pciutils pinentry-curses python-apt-common python3 51s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 51s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 51s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 51s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 51s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 51s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 51s xz-utils 51s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 51s Need to get 829 MB of archives. 51s After this operation, 325 MB of additional disk space will be used. 51s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 51s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 51s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 51s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 52s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 52s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 52s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 52s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 52s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 52s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 52s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 52s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 52s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 52s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 52s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 52s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 52s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 52s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 52s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 52s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 52s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 52s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 52s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 52s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 52s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 52s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 52s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 52s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 52s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 52s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 52s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 52s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 52s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 52s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 52s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 52s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 52s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 52s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 52s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 52s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 52s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 52s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 52s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 53s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 53s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 53s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 53s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 53s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 53s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 53s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 53s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 53s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 53s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 53s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 53s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 53s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 53s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 53s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 53s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 53s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 53s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 53s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 53s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 53s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 53s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 53s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 53s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 53s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 53s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 53s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 53s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 53s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 53s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 53s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 53s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 53s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 53s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 53s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 53s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 53s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 53s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 53s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 53s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 53s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 53s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 53s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 53s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 53s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 53s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 53s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 53s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 53s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 53s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 53s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 53s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 53s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 53s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 53s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 53s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 53s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 53s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 54s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 54s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 54s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 54s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 54s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 54s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 54s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 54s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 78s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 78s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 78s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 78s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 78s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 78s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 78s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 78s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 79s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 80s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 84s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 84s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 84s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 84s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 84s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 84s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 85s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 85s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 85s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 85s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 85s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 85s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 85s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 85s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 85s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 85s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 85s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 85s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 85s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 86s Preconfiguring packages ... 86s Fetched 829 MB in 35s (23.9 MB/s) 86s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 93s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 93s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 93s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 93s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 93s Setting up python3-minimal (3.13.2-2) ... 93s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 94s Preparing to unpack .../0-libsqlite3-0_3.46.1-2_amd64.deb ... 94s Unpacking libsqlite3-0:amd64 (3.46.1-2) over (3.46.1-1) ... 94s Preparing to unpack .../1-python3.13_3.13.2-2_amd64.deb ... 94s Unpacking python3.13 (3.13.2-2) over (3.13.2-1) ... 94s Preparing to unpack .../2-python3.13-minimal_3.13.2-2_amd64.deb ... 94s Unpacking python3.13-minimal (3.13.2-2) over (3.13.2-1) ... 94s Preparing to unpack .../3-libpython3.13-minimal_3.13.2-2_amd64.deb ... 94s Unpacking libpython3.13-minimal:amd64 (3.13.2-2) over (3.13.2-1) ... 94s Preparing to unpack .../4-libpython3.13-stdlib_3.13.2-2_amd64.deb ... 94s Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 94s Preparing to unpack .../5-libpython3-stdlib_3.13.2-2_amd64.deb ... 94s Unpacking libpython3-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 94s Preparing to unpack .../6-rsync_3.4.1+ds1-3_amd64.deb ... 94s Unpacking rsync (3.4.1+ds1-3) over (3.4.1-0syncable1) ... 94s Selecting previously unselected package libdebuginfod-common. 94s Preparing to unpack .../7-libdebuginfod-common_0.192-4_all.deb ... 94s Unpacking libdebuginfod-common (0.192-4) ... 94s Preparing to unpack .../8-libsemanage-common_3.7-2.1build1_all.deb ... 94s Unpacking libsemanage-common (3.7-2.1build1) over (3.7-2.1) ... 94s Setting up libsemanage-common (3.7-2.1build1) ... 95s (Reading database ... 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previously unselected package linux-perf. 110s Preparing to unpack .../74-linux-perf_6.14.0-10.10_amd64.deb ... 110s Unpacking linux-perf (6.14.0-10.10) ... 110s Selecting previously unselected package linux-tools-6.14.0-10. 110s Preparing to unpack .../75-linux-tools-6.14.0-10_6.14.0-10.10_amd64.deb ... 110s Unpacking linux-tools-6.14.0-10 (6.14.0-10.10) ... 110s Selecting previously unselected package linux-tools-6.14.0-10-generic. 110s Preparing to unpack .../76-linux-tools-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 110s Unpacking linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 110s Preparing to unpack .../77-pinentry-curses_1.3.1-2ubuntu3_amd64.deb ... 110s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 110s Preparing to unpack .../78-python3-lazr.uri_1.0.6-6_all.deb ... 110s Unpacking python3-lazr.uri (1.0.6-6) over (1.0.6-5) ... 110s Preparing to unpack .../79-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ... 110s Unpacking python3-rpds-py (0.21.0-2ubuntu2) over (0.21.0-2ubuntu1) ... 110s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 110s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 110s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 110s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 110s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 110s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 110s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 110s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 110s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 111s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 111s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 111s Setting up media-types (13.0.0) ... 111s Installing new version of config file /etc/mime.types ... 111s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 111s Setting up ubuntu-kernel-accessories (1.549) ... 111s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 111s Setting up pci.ids (0.0~2025.03.09-1) ... 111s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 111s Setting up apt-utils (2.9.33) ... 111s Setting up libdebuginfod-common (0.192-4) ... 111s Setting up exfatprogs (1.2.8-1) ... 111s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 111s Setting up bpftool (7.6.0+6.14.0-10.10) ... 111s Setting up libestr0:amd64 (0.1.11-2) ... 111s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 111s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 111s Setting up dosfstools (4.2-1.2) ... 111s Setting up rsyslog (8.2412.0-2ubuntu2) ... 111s info: The user `syslog' is already a member of `adm'. 112s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 112s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 112s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 112s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 112s Setting up systemd (257.3-1ubuntu3) ... 112s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 112s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 112s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 113s Setting up libparted2t64:amd64 (3.6-5) ... 113s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 113s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 113s Setting up linux-headers-generic (6.14.0-10.10) ... 113s Setting up libjemalloc2:amd64 (5.3.0-3) ... 113s Setting up locales (2.41-1ubuntu1) ... 113s Installing new version of config file /etc/locale.alias ... 114s Generating locales (this might take a while)... 116s en_US.UTF-8... done 116s Generation complete. 116s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 116s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 116s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 116s Installing new version of config file /etc/apparmor.d/fusermount3 ... 116s Installing new version of config file /etc/apparmor.d/lsusb ... 116s Installing new version of config file /etc/apparmor.d/openvpn ... 117s Reloading AppArmor profiles 118s Setting up libftdi1-2:amd64 (1.5-8build1) ... 118s Setting up libglib2.0-data (2.84.0-1) ... 118s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 118s Setting up libncurses6:amd64 (6.5+20250216-2) ... 118s Setting up strace (6.13+ds-1ubuntu1) ... 118s Setting up xz-utils (5.6.4-1) ... 118s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 119s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 119s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 119s Setting up udev (257.3-1ubuntu3) ... 120s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 122s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 122s Setting up libpci3:amd64 (1:3.13.0-2) ... 122s Setting up whiptail (0.52.24-4ubuntu2) ... 122s Setting up python-apt-common (2.9.9build1) ... 122s Setting up pnp.ids (0.393-3) ... 122s Setting up libnl-3-200:amd64 (3.7.0-1) ... 122s Setting up python3.13-minimal (3.13.2-2) ... 123s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 123s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 123s Setting up libc-dev-bin (2.41-1ubuntu1) ... 123s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 123s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 123s Setting up rsync (3.4.1+ds1-3) ... 124s rsync.service is a disabled or a static unit not running, not starting it. 124s Setting up python3.13-gdbm (3.13.2-2) ... 124s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 124s Setting up systemd-resolved (257.3-1ubuntu3) ... 124s Setting up initramfs-tools-bin (0.146ubuntu1) ... 124s Setting up ncurses-term (6.5+20250216-2) ... 124s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 124s Setting up libpython3.13:amd64 (3.13.2-2) ... 124s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 124s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 124s Setting up systemd-sysv (257.3-1ubuntu3) ... 124s Setting up linux-headers-virtual (6.14.0-10.10) ... 124s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 124s Setting up python3.13 (3.13.2-2) ... 125s Setting up htop (3.4.0-2) ... 125s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 127s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 127s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 127s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 127s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 128s Setting up parted (3.6-5) ... 128s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 128s Setting up python3 (3.13.2-2) ... 128s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 128s Setting up python3-markupsafe (2.1.5-1build4) ... 128s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 130s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 130s Setting up hwdata (0.393-3) ... 130s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 130s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 130s No schema files found: doing nothing. 130s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 130s Setting up linux-perf (6.14.0-10.10) ... 130s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 130s Setting up pciutils (1:3.13.0-2) ... 130s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 130s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 130s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 130s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 131s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 131s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 131s Setting up curl (8.12.1-3ubuntu1) ... 131s Setting up linux-image-virtual (6.14.0-10.10) ... 131s Setting up initramfs-tools-core (0.146ubuntu1) ... 131s Setting up linux-tools-common (6.14.0-10.10) ... 131s Setting up python3-systemd (235-1build6) ... 131s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 131s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 131s Setting up linux-image-generic (6.14.0-10.10) ... 131s Setting up python3-dbus (1.3.2-5build5) ... 131s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 131s Setting up initramfs-tools (0.146ubuntu1) ... 131s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 131s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 131s update-initramfs: deferring update (trigger activated) 131s Setting up linux-generic (6.14.0-10.10) ... 131s Setting up ubuntu-minimal (1.549) ... 131s Setting up python3-apt (2.9.9build1) ... 131s Setting up python3-bcrypt (4.2.0-2.1build1) ... 131s Setting up python3-yaml (6.0.2-1build2) ... 131s Setting up libfwupd3:amd64 (2.0.6-4) ... 131s Setting up python3-lazr.uri (1.0.6-6) ... 131s Setting up binutils (2.44-3ubuntu1) ... 131s Setting up ubuntu-standard (1.549) ... 131s Setting up cloud-init-base (25.1-0ubuntu3) ... 133s Setting up linux-virtual (6.14.0-10.10) ... 133s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 133s Setting up python3-gi (3.50.0-4build1) ... 133s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 133s Setting up fwupd (2.0.6-4) ... 134s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 134s Setting up cloud-init (25.1-0ubuntu3) ... 134s Processing triggers for man-db (2.13.0-1) ... 136s Processing triggers for dbus (1.16.2-1ubuntu1) ... 136s Processing triggers for shared-mime-info (2.4-5) ... 136s Warning: program compiled against libxml 212 using older 209 136s Processing triggers for libc-bin (2.41-1ubuntu1) ... 136s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 136s /etc/kernel/postinst.d/initramfs-tools: 136s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 136s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 147s /etc/kernel/postinst.d/zz-update-grub: 147s Sourcing file `/etc/default/grub' 147s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 147s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 147s Generating grub configuration file ... 147s Found linux image: /boot/vmlinuz-6.14.0-10-generic 147s Found initrd image: /boot/initrd.img-6.14.0-10-generic 148s Found linux image: /boot/vmlinuz-6.12.0-16-generic 148s Found initrd image: /boot/initrd.img-6.12.0-16-generic 148s Found linux image: /boot/vmlinuz-6.11.0-8-generic 148s Found initrd image: /boot/initrd.img-6.11.0-8-generic 148s Warning: os-prober will not be executed to detect other bootable partitions. 148s Systems on them will not be added to the GRUB boot configuration. 148s Check GRUB_DISABLE_OS_PROBER documentation entry. 148s Adding boot menu entry for UEFI Firmware Settings ... 148s done 148s Processing triggers for initramfs-tools (0.146ubuntu1) ... 148s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 148s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 160s Reading package lists... 160s Building dependency tree... 160s Reading state information... 160s Solving dependencies... 160s The following packages will be REMOVED: 160s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 160s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 160s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 160s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 160s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 160s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 160s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 160s linux-tools-6.12.0-16-generic* 161s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 161s After this operation, 545 MB disk space will be freed. 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 161s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 161s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 161s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 161s Removing libpython3.12t64:amd64 (3.12.9-1) ... 161s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 161s Removing libnsl2:amd64 (1.3.0-3build3) ... 161s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 161s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 162s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 164s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 165s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 167s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 167s /etc/kernel/postrm.d/initramfs-tools: 167s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 167s /etc/kernel/postrm.d/zz-update-grub: 167s Sourcing file `/etc/default/grub' 167s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 167s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 167s Generating grub configuration file ... 167s Found linux image: /boot/vmlinuz-6.14.0-10-generic 167s Found initrd image: /boot/initrd.img-6.14.0-10-generic 167s Found linux image: /boot/vmlinuz-6.12.0-16-generic 167s Found initrd image: /boot/initrd.img-6.12.0-16-generic 168s Warning: os-prober will not be executed to detect other bootable partitions. 168s Systems on them will not be added to the GRUB boot configuration. 168s Check GRUB_DISABLE_OS_PROBER documentation entry. 168s Adding boot menu entry for UEFI Firmware Settings ... 168s done 168s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 168s W: Removing the running kernel 168s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 168s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 168s /etc/kernel/postrm.d/initramfs-tools: 168s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 168s /etc/kernel/postrm.d/zz-update-grub: 168s Sourcing file `/etc/default/grub' 168s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 168s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 168s Generating grub configuration file ... 168s Found linux image: /boot/vmlinuz-6.14.0-10-generic 168s Found initrd image: /boot/initrd.img-6.14.0-10-generic 168s Warning: os-prober will not be executed to detect other bootable partitions. 168s Systems on them will not be added to the GRUB boot configuration. 168s Check GRUB_DISABLE_OS_PROBER documentation entry. 168s Adding boot menu entry for UEFI Firmware Settings ... 168s done 168s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 169s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 170s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 171s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 171s autopkgtest [21:59:37]: upgrading testbed (apt dist-upgrade and autopurge) 171s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 171s Processing triggers for libc-bin (2.41-1ubuntu1) ... 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 171s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 171s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 171s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 171s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 171s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 171s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 171s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 171s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 171s Reading package lists... 171s Building dependency tree... 171s Reading state information... 172s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 172s Starting 2 pkgProblemResolver with broken count: 0 172s Done 172s Entering ResolveByKeep 172s 173s Calculating upgrade... 173s The following packages will be upgraded: 173s libc-bin libc-dev-bin libc6 libc6-dev locales 173s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 173s Need to get 10.5 MB of archives. 173s After this operation, 1024 B of additional disk space will be used. 173s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 173s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 173s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 173s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 174s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 174s Preconfiguring packages ... 174s Fetched 10.5 MB in 1s (10.1 MB/s) 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 174s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 174s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 174s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 174s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 174s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 175s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 175s Setting up libc6:amd64 (2.41-1ubuntu2) ... 175s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 175s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 175s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 175s Setting up libc-bin (2.41-1ubuntu2) ... 175s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 175s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 175s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 175s Setting up locales (2.41-1ubuntu2) ... 176s Generating locales (this might take a while)... 178s en_US.UTF-8... done 178s Generation complete. 178s Setting up libc-dev-bin (2.41-1ubuntu2) ... 178s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 178s Processing triggers for man-db (2.13.0-1) ... 178s Processing triggers for systemd (257.3-1ubuntu3) ... 179s Reading package lists... 180s Building dependency tree... 180s Reading state information... 180s Starting pkgProblemResolver with broken count: 0 180s Starting 2 pkgProblemResolver with broken count: 0 180s Done 180s Solving dependencies... 180s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 181s autopkgtest [21:59:47]: rebooting testbed after setup commands that affected boot 204s autopkgtest [22:00:10]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 206s autopkgtest [22:00:12]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-alabaster.matrix 208s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-alabaster.matrix 1.6.1+ds-2 (dsc) [2453 B] 208s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-alabaster.matrix 1.6.1+ds-2 (tar) [47.7 kB] 208s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-alabaster.matrix 1.6.1+ds-2 (diff) [4240 B] 208s gpgv: Signature made Sun Jan 12 22:19:35 2025 UTC 208s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 208s gpgv: issuer "crusoe@debian.org" 208s gpgv: Can't check signature: No public key 208s dpkg-source: warning: cannot verify inline signature for ./r-bioc-alabaster.matrix_1.6.1+ds-2.dsc: no acceptable signature found 208s autopkgtest [22:00:14]: testing package r-bioc-alabaster.matrix version 1.6.1+ds-2 209s autopkgtest [22:00:15]: build not needed 211s autopkgtest [22:00:17]: test pkg-r-autopkgtest: preparing testbed 211s Reading package lists... 211s Building dependency tree... 211s Reading state information... 212s Starting pkgProblemResolver with broken count: 0 212s Starting 2 pkgProblemResolver with broken count: 0 212s Done 212s The following NEW packages will be installed: 212s build-essential comerr-dev cpp cpp-14 cpp-14-x86-64-linux-gnu 212s cpp-x86-64-linux-gnu dctrl-tools fontconfig fontconfig-config 212s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 212s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-14 212s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 212s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 212s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu hdf5-helpers 212s icu-devtools javascript-common krb5-multidev libaec-dev libaec0 libasan8 212s libbibtex-parser-perl libblas-dev libblas3 libblosc1 libboost-dev 212s libboost1.83-dev libbrotli-dev libbz2-dev libcairo2 libcc1-0 212s libcurl4-openssl-dev libdatrie1 libdeflate-dev libdeflate0 libevent-2.1-7t64 212s libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 libgmp-dev 212s libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev 212s libgomp1 libgraphite2-3 libgssrpc4t64 libharfbuzz0b libhdf5-310 212s libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 212s libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libhnswlib-dev libhwasan0 libice6 212s libicu-dev libidn2-dev libio-string-perl libisl23 libitm1 libjbig0 212s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 212s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 212s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 212s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 212s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 212s libjs-twitter-bootstrap-datepicker libkadm5clnt-mit12 libkadm5srv-mit12 212s libkdb5-10t64 libkpathsea6 libkrb5-dev liblapack-dev liblapack3 212s liblatex-tounicode-perl libldap-dev liblerc4 liblsan0 liblua5.4-0 212s liblzma-dev libmpc3 libmpfi0 libncurses-dev libnghttp2-dev libp11-kit-dev 212s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 212s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 212s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl-dev libptexenc1 212s libquadmath0 libreadline-dev librtmp-dev libsharpyuv0 libsm6 libsnappy1v5 212s libssh2-1-dev libssl-dev libstdc++-14-dev libsynctex2 libsz2 libtasn1-6-dev 212s libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 212s libtirpc-dev libtk8.6 libtsan2 libubsan1 libunbound8 libwebp7 libxaw7 212s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 212s libxss1 libxt6t64 libzstd-dev libzzip-0-13t64 littler nettle-dev 212s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 212s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 212s r-bioc-alabaster.base r-bioc-alabaster.matrix r-bioc-alabaster.schemas 212s r-bioc-assorthead r-bioc-beachmat r-bioc-biocgenerics r-bioc-biocparallel 212s r-bioc-biocsingular r-bioc-biocstyle r-bioc-biocversion r-bioc-delayedarray 212s r-bioc-hdf5array r-bioc-iranges r-bioc-matrixgenerics r-bioc-residualmatrix 212s r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays 212s r-bioc-s4vectors r-bioc-scaledmatrix r-bioc-sparsearray r-bioc-xvector 212s r-bioc-zlibbioc r-cran-abind r-cran-base64enc r-cran-bh r-cran-biocmanager 212s r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 212s r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon 212s r-cran-desc r-cran-diffobj r-cran-digest r-cran-evaluate r-cran-fastmap 212s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 212s r-cran-futile.options r-cran-glue r-cran-highr r-cran-htmltools 212s r-cran-httpuv r-cran-irlba r-cran-jquerylib r-cran-jsonlite r-cran-knitr 212s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 212s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 212s r-cran-pkgbuild r-cran-pkgkitten r-cran-pkgload r-cran-praise 212s r-cran-processx r-cran-promises r-cran-ps r-cran-r6 r-cran-rappdirs 212s r-cran-rcpp r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsvd 212s r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-testthat 212s r-cran-tinytex r-cran-waldo r-cran-withr r-cran-xfun r-cran-xtable 212s r-cran-yaml t1utils tex-common texlive-base texlive-bibtex-extra 212s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 212s zlib1g-dev 213s 0 upgraded, 284 newly installed, 0 to remove and 0 not upgraded. 213s Need to get 393 MB of archives. 213s After this operation, 1333 MB of additional disk space will be used. 213s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 213s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 213s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 214s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 214s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 214s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 214s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 214s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 214s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 214s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 214s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 214s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 214s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 215s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 215s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 215s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 215s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 217s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 217s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 217s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 217s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 218s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 219s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 219s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 219s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 219s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 219s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 219s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 219s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 219s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 219s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 219s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 219s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 219s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 219s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 219s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 219s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 219s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 219s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 220s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 220s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 220s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 220s Get:43 http://ftpmaster.internal/ubuntu plucky/universe amd64 hdf5-helpers amd64 1.14.5+repack-3 [17.0 kB] 220s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 220s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 220s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 comerr-dev amd64 2.1-1.47.2-1ubuntu1 [44.9 kB] 220s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libgssrpc4t64 amd64 1.21.3-4ubuntu2 [58.1 kB] 220s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libkadm5clnt-mit12 amd64 1.21.3-4ubuntu2 [41.3 kB] 220s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libkdb5-10t64 amd64 1.21.3-4ubuntu2 [42.0 kB] 220s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libkadm5srv-mit12 amd64 1.21.3-4ubuntu2 [55.5 kB] 220s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 krb5-multidev amd64 1.21.3-4ubuntu2 [125 kB] 220s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 220s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 220s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 220s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 220s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 220s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 220s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB] 220s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB] 220s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu2 [10.7 MB] 220s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 220s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli-dev amd64 1.1.0-2build4 [381 kB] 221s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 221s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 221s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 221s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 221s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 221s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 221s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libidn2-dev amd64 2.3.7-2build2 [120 kB] 221s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libkrb5-dev amd64 1.21.3-4ubuntu2 [11.9 kB] 221s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libldap-dev amd64 2.6.9+dfsg-1~exp2ubuntu1 [335 kB] 221s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 221s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 221s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 221s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnghttp2-dev amd64 1.64.0-1 [123 kB] 221s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libpsl-dev amd64 0.21.2-1.1build1 [76.4 kB] 221s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3ubuntu1 [10.0 kB] 221s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3ubuntu1 [341 kB] 221s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10 [144 kB] 221s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libunbound8 amd64 1.22.0-1ubuntu1 [519 kB] 221s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-dane0t64 amd64 3.8.9-2ubuntu2 [24.4 kB] 221s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2ubuntu2 [24.6 kB] 221s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libp11-kit-dev amd64 0.25.5-2ubuntu3 [23.5 kB] 221s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libtasn1-6-dev amd64 4.20.0-2 [98.1 kB] 221s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 nettle-dev amd64 3.10.1-1 [1187 kB] 221s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls28-dev amd64 3.8.9-2ubuntu2 [1118 kB] 221s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 221s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2build7 [66.7 kB] 221s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libssl-dev amd64 3.4.1-1ubuntu1 [2873 kB] 221s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libssh2-1-dev amd64 1.11.1-1 [292 kB] 221s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [444 kB] 221s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4-openssl-dev amd64 8.12.1-3ubuntu1 [522 kB] 221s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 221s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 221s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 221s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 221s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 221s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 221s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 221s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-cpp-310 amd64 1.14.5+repack-3 [129 kB] 221s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-fortran-310 amd64 1.14.5+repack-3 [108 kB] 221s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 222s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-3 [32.4 kB] 222s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-3 [11.7 kB] 222s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 223s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 224s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 224s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 224s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 224s Get:110 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec-dev amd64 1.1.3-1 [19.8 kB] 224s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-dev amd64 1.14.5+repack-3 [3505 kB] 230s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhnswlib-dev all 0.8.0-1build3 [24.4 kB] 230s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 230s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 230s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 237s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 237s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 237s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 237s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 237s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 237s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 237s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 237s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 237s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 237s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 237s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 237s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 237s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 237s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 237s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 237s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB] 237s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 238s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 239s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 239s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 239s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 239s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 239s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 239s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 239s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 239s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 239s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 239s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 239s Get:144 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 239s Get:145 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 239s Get:146 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 239s Get:147 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 239s Get:148 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 239s Get:149 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 239s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 239s Get:151 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB] 239s Get:152 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 239s Get:153 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 239s Get:154 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 239s Get:155 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB] 239s Get:156 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 239s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 239s Get:158 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB] 239s Get:159 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 239s Get:160 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 239s Get:161 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 239s Get:162 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 239s Get:163 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 239s Get:164 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 239s Get:165 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 239s Get:166 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 239s Get:167 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 239s Get:168 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 239s Get:169 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 239s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 239s Get:171 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 239s Get:172 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 239s Get:173 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 239s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 241s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 241s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 241s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 241s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 241s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 241s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 241s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 242s Get:182 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 242s Get:183 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 242s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 242s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 242s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 242s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-alabaster.schemas all 1.6.0+ds-2 [24.9 kB] 242s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 242s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5lib amd64 1.28.0+dfsg-2build1 [97.4 kB] 242s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5filters amd64 1.18.0+dfsg-2 [137 kB] 242s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-rhdf5 amd64 2.50.2+dfsg-1build1 [822 kB] 242s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 242s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 242s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 242s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-alabaster.base amd64 1.6.1+ds-2build1 [800 kB] 242s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 242s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 243s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 243s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 243s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 243s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 243s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 243s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 243s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 243s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 243s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1392 kB] 243s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 243s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-hdf5array amd64 1.34.0-2build1 [8792 kB] 244s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-alabaster.matrix amd64 1.6.1+ds-2 [443 kB] 244s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-assorthead all 1.0.1+ds-2 [194 kB] 244s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-beachmat amd64 2.22.0+ds-2 [976 kB] 244s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 244s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 244s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 244s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 244s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 244s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 244s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 244s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 244s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 244s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-scaledmatrix all 1.14.0+dfsg-2 [324 kB] 244s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-irlba amd64 2.3.5.1-4 [295 kB] 244s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsvd all 1.0.5-1 [3589 kB] 244s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocsingular amd64 1.22.0+ds-2 [357 kB] 244s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 244s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 244s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 244s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 244s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 244s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 244s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 244s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 244s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 244s Get:234 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 245s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 245s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 245s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 245s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 245s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 245s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 245s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 245s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 245s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 245s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 245s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 245s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 245s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 245s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 245s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 245s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 245s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 245s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 245s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 245s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 245s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 245s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 245s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 245s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 245s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 245s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 245s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 245s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 245s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 245s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.19 [29.8 kB] 245s Get:265 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 245s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB] 246s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20250114-1 [22.5 MB] 246s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20250114-1 [1264 kB] 246s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 249s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 249s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 249s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-residualmatrix all 1.16.0+dfsg-2 [317 kB] 249s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 249s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 249s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 249s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 249s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 249s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 249s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 249s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] 249s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 249s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 249s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-2 [150 kB] 249s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 250s Preconfiguring packages ... 250s Fetched 393 MB in 37s (10.6 MB/s) 250s Selecting previously unselected package libisl23:amd64. 250s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 250s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 250s Unpacking libisl23:amd64 (0.27-1) ... 251s Selecting previously unselected package libmpc3:amd64. 251s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 251s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 251s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 251s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 251s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 251s Selecting previously unselected package cpp-14. 251s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 251s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 251s Selecting previously unselected package cpp-x86-64-linux-gnu. 251s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 251s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 251s Selecting previously unselected package cpp. 251s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 251s Unpacking cpp (4:14.2.0-1ubuntu1) ... 251s Selecting previously unselected package libcc1-0:amd64. 251s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 251s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 251s Selecting previously unselected package libgomp1:amd64. 251s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 251s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 251s Selecting previously unselected package libitm1:amd64. 251s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 251s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 251s Selecting previously unselected package libasan8:amd64. 251s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 251s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 251s Selecting previously unselected package liblsan0:amd64. 251s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 251s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 251s Selecting previously unselected package libtsan2:amd64. 251s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 251s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 251s Selecting previously unselected package libubsan1:amd64. 251s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 251s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 251s Selecting previously unselected package libhwasan0:amd64. 251s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 251s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 251s Selecting previously unselected package libquadmath0:amd64. 251s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 251s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 251s Selecting previously unselected package libgcc-14-dev:amd64. 251s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 251s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 252s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 252s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 252s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 252s Selecting previously unselected package gcc-14. 252s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 252s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 252s Selecting previously unselected package gcc-x86-64-linux-gnu. 252s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 252s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 252s Selecting previously unselected package gcc. 252s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 252s Unpacking gcc (4:14.2.0-1ubuntu1) ... 252s Selecting previously unselected package libstdc++-14-dev:amd64. 252s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 252s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 252s Selecting previously unselected package g++-14-x86-64-linux-gnu. 252s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 252s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 252s Selecting previously unselected package g++-14. 252s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ... 252s Unpacking g++-14 (14.2.0-17ubuntu3) ... 252s Selecting previously unselected package g++-x86-64-linux-gnu. 252s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 252s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 252s Selecting previously unselected package g++. 252s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 252s Unpacking g++ (4:14.2.0-1ubuntu1) ... 252s Selecting previously unselected package build-essential. 253s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 253s Unpacking build-essential (12.10ubuntu1) ... 253s Selecting previously unselected package dctrl-tools. 253s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 253s Unpacking dctrl-tools (2.24-3build3) ... 253s Selecting previously unselected package fonts-dejavu-mono. 253s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 253s Unpacking fonts-dejavu-mono (2.37-8) ... 253s Selecting previously unselected package fonts-dejavu-core. 253s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 253s Unpacking fonts-dejavu-core (2.37-8) ... 253s Selecting previously unselected package fontconfig-config. 253s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 253s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 253s Selecting previously unselected package libfontconfig1:amd64. 253s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 253s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 253s Selecting previously unselected package fontconfig. 253s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 253s Unpacking fontconfig (2.15.0-2ubuntu1) ... 253s Selecting previously unselected package fonts-font-awesome. 253s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 253s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 253s Selecting previously unselected package fonts-glyphicons-halflings. 253s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 253s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 253s Selecting previously unselected package fonts-lmodern. 253s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ... 253s Unpacking fonts-lmodern (2.005-1) ... 253s Selecting previously unselected package fonts-mathjax. 253s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 253s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 253s Selecting previously unselected package libgfortran5:amd64. 253s Preparing to unpack .../036-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 253s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 253s Selecting previously unselected package libgfortran-14-dev:amd64. 253s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 253s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 253s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 253s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 253s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 254s Selecting previously unselected package gfortran-14. 254s Preparing to unpack .../039-gfortran-14_14.2.0-17ubuntu3_amd64.deb ... 254s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 254s Selecting previously unselected package gfortran-x86-64-linux-gnu. 254s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 254s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 254s Selecting previously unselected package gfortran. 254s Preparing to unpack .../041-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 254s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 254s Selecting previously unselected package hdf5-helpers. 254s Preparing to unpack .../042-hdf5-helpers_1.14.5+repack-3_amd64.deb ... 254s Unpacking hdf5-helpers (1.14.5+repack-3) ... 254s Selecting previously unselected package icu-devtools. 254s Preparing to unpack .../043-icu-devtools_76.1-1ubuntu2_amd64.deb ... 254s Unpacking icu-devtools (76.1-1ubuntu2) ... 254s Selecting previously unselected package javascript-common. 254s Preparing to unpack .../044-javascript-common_12_all.deb ... 254s Unpacking javascript-common (12) ... 254s Selecting previously unselected package comerr-dev:amd64. 254s Preparing to unpack .../045-comerr-dev_2.1-1.47.2-1ubuntu1_amd64.deb ... 254s Unpacking comerr-dev:amd64 (2.1-1.47.2-1ubuntu1) ... 254s Selecting previously unselected package libgssrpc4t64:amd64. 254s Preparing to unpack .../046-libgssrpc4t64_1.21.3-4ubuntu2_amd64.deb ... 254s Unpacking libgssrpc4t64:amd64 (1.21.3-4ubuntu2) ... 254s Selecting previously unselected package libkadm5clnt-mit12:amd64. 254s Preparing to unpack .../047-libkadm5clnt-mit12_1.21.3-4ubuntu2_amd64.deb ... 254s Unpacking libkadm5clnt-mit12:amd64 (1.21.3-4ubuntu2) ... 254s Selecting previously unselected package libkdb5-10t64:amd64. 254s Preparing to unpack .../048-libkdb5-10t64_1.21.3-4ubuntu2_amd64.deb ... 254s Unpacking libkdb5-10t64:amd64 (1.21.3-4ubuntu2) ... 254s Selecting previously unselected package libkadm5srv-mit12:amd64. 254s Preparing to unpack .../049-libkadm5srv-mit12_1.21.3-4ubuntu2_amd64.deb ... 254s Unpacking libkadm5srv-mit12:amd64 (1.21.3-4ubuntu2) ... 254s Selecting previously unselected package krb5-multidev:amd64. 254s Preparing to unpack .../050-krb5-multidev_1.21.3-4ubuntu2_amd64.deb ... 254s Unpacking krb5-multidev:amd64 (1.21.3-4ubuntu2) ... 254s Selecting previously unselected package libaec0:amd64. 254s Preparing to unpack .../051-libaec0_1.1.3-1_amd64.deb ... 254s Unpacking libaec0:amd64 (1.1.3-1) ... 254s Selecting previously unselected package libio-string-perl. 254s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 254s Unpacking libio-string-perl (1.08-4) ... 254s Selecting previously unselected package liblatex-tounicode-perl. 254s Preparing to unpack .../053-liblatex-tounicode-perl_0.55-1_all.deb ... 254s Unpacking liblatex-tounicode-perl (0.55-1) ... 254s Selecting previously unselected package libbibtex-parser-perl. 254s Preparing to unpack .../054-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 254s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 254s Selecting previously unselected package libblas3:amd64. 254s Preparing to unpack .../055-libblas3_3.12.1-2_amd64.deb ... 254s Unpacking libblas3:amd64 (3.12.1-2) ... 254s Selecting previously unselected package libblas-dev:amd64. 254s Preparing to unpack .../056-libblas-dev_3.12.1-2_amd64.deb ... 254s Unpacking libblas-dev:amd64 (3.12.1-2) ... 254s Selecting previously unselected package libsnappy1v5:amd64. 254s Preparing to unpack .../057-libsnappy1v5_1.2.1-1_amd64.deb ... 254s Unpacking libsnappy1v5:amd64 (1.2.1-1) ... 254s Selecting previously unselected package libblosc1:amd64. 254s Preparing to unpack .../058-libblosc1_1.21.5+ds-1build1_amd64.deb ... 254s Unpacking libblosc1:amd64 (1.21.5+ds-1build1) ... 254s Selecting previously unselected package libboost1.83-dev:amd64. 254s Preparing to unpack .../059-libboost1.83-dev_1.83.0-4.1ubuntu2_amd64.deb ... 254s Unpacking libboost1.83-dev:amd64 (1.83.0-4.1ubuntu2) ... 256s Selecting previously unselected package libboost-dev:amd64. 256s Preparing to unpack .../060-libboost-dev_1.83.0.2ubuntu1_amd64.deb ... 256s Unpacking libboost-dev:amd64 (1.83.0.2ubuntu1) ... 256s Selecting previously unselected package libbrotli-dev:amd64. 256s Preparing to unpack .../061-libbrotli-dev_1.1.0-2build4_amd64.deb ... 256s Unpacking libbrotli-dev:amd64 (1.1.0-2build4) ... 256s Selecting previously unselected package libbz2-dev:amd64. 257s Preparing to unpack .../062-libbz2-dev_1.0.8-6_amd64.deb ... 257s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 257s Selecting previously unselected package libpixman-1-0:amd64. 257s Preparing to unpack .../063-libpixman-1-0_0.44.0-3_amd64.deb ... 257s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 257s Selecting previously unselected package libxcb-render0:amd64. 257s Preparing to unpack .../064-libxcb-render0_1.17.0-2_amd64.deb ... 257s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 257s Selecting previously unselected package libxcb-shm0:amd64. 257s Preparing to unpack .../065-libxcb-shm0_1.17.0-2_amd64.deb ... 257s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 257s Selecting previously unselected package libxrender1:amd64. 257s Preparing to unpack .../066-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 257s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 257s Selecting previously unselected package libcairo2:amd64. 257s Preparing to unpack .../067-libcairo2_1.18.2-2_amd64.deb ... 257s Unpacking libcairo2:amd64 (1.18.2-2) ... 257s Selecting previously unselected package libidn2-dev:amd64. 257s Preparing to unpack .../068-libidn2-dev_2.3.7-2build2_amd64.deb ... 257s Unpacking libidn2-dev:amd64 (2.3.7-2build2) ... 257s Selecting previously unselected package libkrb5-dev:amd64. 257s Preparing to unpack .../069-libkrb5-dev_1.21.3-4ubuntu2_amd64.deb ... 257s Unpacking libkrb5-dev:amd64 (1.21.3-4ubuntu2) ... 257s Selecting previously unselected package libldap-dev:amd64. 257s Preparing to unpack .../070-libldap-dev_2.6.9+dfsg-1~exp2ubuntu1_amd64.deb ... 257s Unpacking libldap-dev:amd64 (2.6.9+dfsg-1~exp2ubuntu1) ... 257s Selecting previously unselected package libpkgconf3:amd64. 257s Preparing to unpack .../071-libpkgconf3_1.8.1-4_amd64.deb ... 257s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 257s Selecting previously unselected package pkgconf-bin. 257s Preparing to unpack .../072-pkgconf-bin_1.8.1-4_amd64.deb ... 257s Unpacking pkgconf-bin (1.8.1-4) ... 257s Selecting previously unselected package pkgconf:amd64. 257s Preparing to unpack .../073-pkgconf_1.8.1-4_amd64.deb ... 257s Unpacking pkgconf:amd64 (1.8.1-4) ... 257s Selecting previously unselected package libnghttp2-dev:amd64. 257s Preparing to unpack .../074-libnghttp2-dev_1.64.0-1_amd64.deb ... 257s Unpacking libnghttp2-dev:amd64 (1.64.0-1) ... 257s Selecting previously unselected package libpsl-dev:amd64. 257s Preparing to unpack .../075-libpsl-dev_0.21.2-1.1build1_amd64.deb ... 257s Unpacking libpsl-dev:amd64 (0.21.2-1.1build1) ... 257s Selecting previously unselected package libgmpxx4ldbl:amd64. 257s Preparing to unpack .../076-libgmpxx4ldbl_2%3a6.3.0+dfsg-3ubuntu1_amd64.deb ... 257s Unpacking libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3ubuntu1) ... 257s Selecting previously unselected package libgmp-dev:amd64. 257s Preparing to unpack .../077-libgmp-dev_2%3a6.3.0+dfsg-3ubuntu1_amd64.deb ... 257s Unpacking libgmp-dev:amd64 (2:6.3.0+dfsg-3ubuntu1) ... 257s Selecting previously unselected package libevent-2.1-7t64:amd64. 257s Preparing to unpack .../078-libevent-2.1-7t64_2.1.12-stable-10_amd64.deb ... 257s Unpacking libevent-2.1-7t64:amd64 (2.1.12-stable-10) ... 257s Selecting previously unselected package libunbound8:amd64. 257s Preparing to unpack .../079-libunbound8_1.22.0-1ubuntu1_amd64.deb ... 257s Unpacking libunbound8:amd64 (1.22.0-1ubuntu1) ... 257s Selecting previously unselected package libgnutls-dane0t64:amd64. 257s Preparing to unpack .../080-libgnutls-dane0t64_3.8.9-2ubuntu2_amd64.deb ... 257s Unpacking libgnutls-dane0t64:amd64 (3.8.9-2ubuntu2) ... 257s Selecting previously unselected package libgnutls-openssl27t64:amd64. 257s Preparing to unpack .../081-libgnutls-openssl27t64_3.8.9-2ubuntu2_amd64.deb ... 257s Unpacking libgnutls-openssl27t64:amd64 (3.8.9-2ubuntu2) ... 257s Selecting previously unselected package libp11-kit-dev:amd64. 257s Preparing to unpack .../082-libp11-kit-dev_0.25.5-2ubuntu3_amd64.deb ... 257s Unpacking libp11-kit-dev:amd64 (0.25.5-2ubuntu3) ... 257s Selecting previously unselected package libtasn1-6-dev:amd64. 257s Preparing to unpack .../083-libtasn1-6-dev_4.20.0-2_amd64.deb ... 257s Unpacking libtasn1-6-dev:amd64 (4.20.0-2) ... 257s Selecting previously unselected package nettle-dev:amd64. 257s Preparing to unpack .../084-nettle-dev_3.10.1-1_amd64.deb ... 257s Unpacking nettle-dev:amd64 (3.10.1-1) ... 257s Selecting previously unselected package libgnutls28-dev:amd64. 257s Preparing to unpack .../085-libgnutls28-dev_3.8.9-2ubuntu2_amd64.deb ... 257s Unpacking libgnutls28-dev:amd64 (3.8.9-2ubuntu2) ... 257s Selecting previously unselected package zlib1g-dev:amd64. 258s Preparing to unpack .../086-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 258s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 258s Selecting previously unselected package librtmp-dev:amd64. 258s Preparing to unpack .../087-librtmp-dev_2.4+20151223.gitfa8646d.1-2build7_amd64.deb ... 258s Unpacking librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2build7) ... 258s Selecting previously unselected package libssl-dev:amd64. 258s Preparing to unpack .../088-libssl-dev_3.4.1-1ubuntu1_amd64.deb ... 258s Unpacking libssl-dev:amd64 (3.4.1-1ubuntu1) ... 258s Selecting previously unselected package libssh2-1-dev:amd64. 258s Preparing to unpack .../089-libssh2-1-dev_1.11.1-1_amd64.deb ... 258s Unpacking libssh2-1-dev:amd64 (1.11.1-1) ... 258s Selecting previously unselected package libzstd-dev:amd64. 258s Preparing to unpack .../090-libzstd-dev_1.5.6+dfsg-2_amd64.deb ... 258s Unpacking libzstd-dev:amd64 (1.5.6+dfsg-2) ... 258s Selecting previously unselected package libcurl4-openssl-dev:amd64. 258s Preparing to unpack .../091-libcurl4-openssl-dev_8.12.1-3ubuntu1_amd64.deb ... 258s Unpacking libcurl4-openssl-dev:amd64 (8.12.1-3ubuntu1) ... 258s Selecting previously unselected package libdatrie1:amd64. 258s Preparing to unpack .../092-libdatrie1_0.2.13-3build1_amd64.deb ... 258s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 258s Selecting previously unselected package libdeflate0:amd64. 258s Preparing to unpack .../093-libdeflate0_1.23-1_amd64.deb ... 258s Unpacking libdeflate0:amd64 (1.23-1) ... 258s Selecting previously unselected package libdeflate-dev:amd64. 258s Preparing to unpack .../094-libdeflate-dev_1.23-1_amd64.deb ... 258s Unpacking libdeflate-dev:amd64 (1.23-1) ... 258s Selecting previously unselected package libgraphite2-3:amd64. 258s Preparing to unpack .../095-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 258s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 258s Selecting previously unselected package libharfbuzz0b:amd64. 258s Preparing to unpack .../096-libharfbuzz0b_10.2.0-1_amd64.deb ... 258s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 258s Selecting previously unselected package libsz2:amd64. 258s Preparing to unpack .../097-libsz2_1.1.3-1_amd64.deb ... 258s Unpacking libsz2:amd64 (1.1.3-1) ... 258s Selecting previously unselected package libhdf5-310:amd64. 258s Preparing to unpack .../098-libhdf5-310_1.14.5+repack-3_amd64.deb ... 258s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... 258s Selecting previously unselected package libhdf5-cpp-310:amd64. 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258s Selecting previously unselected package libjpeg-turbo8:amd64. 258s Preparing to unpack .../104-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 258s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 258s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 258s Preparing to unpack .../105-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ... 258s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 258s Selecting previously unselected package libjpeg8:amd64. 258s Preparing to unpack .../106-libjpeg8_8c-2ubuntu11_amd64.deb ... 258s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 258s Selecting previously unselected package libjpeg8-dev:amd64. 258s Preparing to unpack .../107-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 258s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 258s Selecting previously unselected package libjpeg-dev:amd64. 258s Preparing to unpack .../108-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 258s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 258s Selecting previously unselected package libaec-dev:amd64. 258s Preparing to unpack .../109-libaec-dev_1.1.3-1_amd64.deb ... 258s Unpacking libaec-dev:amd64 (1.1.3-1) ... 259s Selecting previously unselected package libhdf5-dev. 259s Preparing to unpack .../110-libhdf5-dev_1.14.5+repack-3_amd64.deb ... 259s Unpacking libhdf5-dev (1.14.5+repack-3) ... 259s Selecting previously unselected package libhnswlib-dev. 259s Preparing to unpack .../111-libhnswlib-dev_0.8.0-1build3_all.deb ... 259s Unpacking libhnswlib-dev (0.8.0-1build3) ... 259s Selecting previously unselected package x11-common. 259s Preparing to unpack .../112-x11-common_1%3a7.7+23ubuntu3_all.deb ... 259s Unpacking x11-common (1:7.7+23ubuntu3) ... 259s Selecting previously unselected package libice6:amd64. 259s Preparing to unpack .../113-libice6_2%3a1.1.1-1_amd64.deb ... 259s Unpacking libice6:amd64 (2:1.1.1-1) ... 259s Selecting previously unselected package libicu-dev:amd64. 259s Preparing to unpack .../114-libicu-dev_76.1-1ubuntu2_amd64.deb 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unpack .../130-libkpathsea6_2024.20240313.70630+ds-6_amd64.deb ... 260s Unpacking libkpathsea6:amd64 (2024.20240313.70630+ds-6) ... 260s Selecting previously unselected package liblapack3:amd64. 260s Preparing to unpack .../131-liblapack3_3.12.1-2_amd64.deb ... 260s Unpacking liblapack3:amd64 (3.12.1-2) ... 260s Selecting previously unselected package liblapack-dev:amd64. 260s Preparing to unpack .../132-liblapack-dev_3.12.1-2_amd64.deb ... 260s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 260s Selecting previously unselected package liblerc4:amd64. 260s Preparing to unpack .../133-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 260s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 260s Selecting previously unselected package liblua5.4-0:amd64. 260s Preparing to unpack .../134-liblua5.4-0_5.4.7-1_amd64.deb ... 260s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 260s Selecting previously unselected package libmpfi0:amd64. 260s Preparing to unpack .../135-libmpfi0_1.5.4+ds-4_amd64.deb ... 260s 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Selecting previously unselected package libxss1:amd64. 261s Preparing to unpack .../162-libxss1_1%3a1.2.3-1build3_amd64.deb ... 261s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 261s Selecting previously unselected package libtk8.6:amd64. 261s Preparing to unpack .../163-libtk8.6_8.6.16-1_amd64.deb ... 261s Unpacking libtk8.6:amd64 (8.6.16-1) ... 261s Selecting previously unselected package libxt6t64:amd64. 261s Preparing to unpack .../164-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 261s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 261s Selecting previously unselected package libxmu6:amd64. 261s Preparing to unpack .../165-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 261s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 261s Selecting previously unselected package libxpm4:amd64. 261s Preparing to unpack .../166-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 261s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 261s Selecting previously unselected package libxaw7:amd64. 261s Preparing to unpack .../167-libxaw7_2%3a1.0.16-1_amd64.deb ... 261s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 261s Selecting previously unselected package libxi6:amd64. 261s Preparing to unpack .../168-libxi6_2%3a1.8.2-1_amd64.deb ... 261s Unpacking libxi6:amd64 (2:1.8.2-1) ... 261s Selecting previously unselected package libzzip-0-13t64:amd64. 262s Preparing to unpack .../169-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 262s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 262s Selecting previously unselected package zip. 262s Preparing to unpack .../170-zip_3.0-14ubuntu2_amd64.deb ... 262s Unpacking zip (3.0-14ubuntu2) ... 262s Selecting previously unselected package unzip. 262s Preparing to unpack .../171-unzip_6.0-28ubuntu6_amd64.deb ... 262s Unpacking unzip (6.0-28ubuntu6) ... 262s Selecting previously unselected package xdg-utils. 262s Preparing to unpack .../172-xdg-utils_1.2.1-2ubuntu1_all.deb ... 262s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 262s Selecting previously unselected package r-base-core. 262s Preparing to unpack .../173-r-base-core_4.4.3-1_amd64.deb ... 262s Unpacking r-base-core (4.4.3-1) ... 262s Selecting previously unselected package r-cran-littler. 262s Preparing to unpack .../174-r-cran-littler_0.3.20-2_amd64.deb ... 262s Unpacking r-cran-littler (0.3.20-2) ... 262s Selecting previously unselected package littler. 262s Preparing to unpack .../175-littler_0.3.20-2_all.deb ... 262s Unpacking littler (0.3.20-2) ... 262s Selecting previously unselected package node-bootstrap-sass. 262s Preparing to unpack .../176-node-bootstrap-sass_3.4.3-2_all.deb ... 262s Unpacking node-bootstrap-sass (3.4.3-2) ... 262s Selecting previously unselected package node-html5shiv. 262s Preparing to unpack .../177-node-html5shiv_3.7.3+dfsg-5_all.deb ... 262s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 262s Selecting previously unselected package node-normalize.css. 262s Preparing to unpack .../178-node-normalize.css_8.0.1-5_all.deb ... 262s Unpacking node-normalize.css (8.0.1-5) ... 262s Selecting previously unselected package pandoc-data. 262s Preparing to unpack .../179-pandoc-data_3.1.11.1-3build1_all.deb ... 262s Unpacking pandoc-data (3.1.11.1-3build1) ... 262s Selecting previously unselected package pandoc. 262s Preparing to unpack .../180-pandoc_3.1.11.1+ds-2_amd64.deb ... 262s Unpacking pandoc (3.1.11.1+ds-2) ... 263s Selecting previously unselected package liblzma-dev:amd64. 263s Preparing to unpack .../181-liblzma-dev_5.6.4-1_amd64.deb ... 263s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 263s Selecting previously unselected package libtirpc-dev:amd64. 263s Preparing to unpack .../182-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 263s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 263s Selecting previously unselected package r-base-dev. 263s Preparing to unpack .../183-r-base-dev_4.4.3-1_all.deb ... 263s Unpacking r-base-dev (4.4.3-1) ... 263s Selecting previously unselected package pkg-r-autopkgtest. 263s Preparing to unpack .../184-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 263s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 263s Selecting previously unselected package r-bioc-biocgenerics. 263s Preparing to unpack .../185-r-bioc-biocgenerics_0.52.0-2_all.deb ... 263s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 263s Selecting previously unselected package r-bioc-alabaster.schemas. 263s Preparing to unpack .../186-r-bioc-alabaster.schemas_1.6.0+ds-2_all.deb ... 263s Unpacking r-bioc-alabaster.schemas (1.6.0+ds-2) ... 263s Selecting previously unselected package r-bioc-s4vectors. 263s Preparing to unpack .../187-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 263s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 263s Selecting previously unselected package r-bioc-rhdf5lib. 263s Preparing to unpack .../188-r-bioc-rhdf5lib_1.28.0+dfsg-2build1_amd64.deb ... 263s Unpacking r-bioc-rhdf5lib (1.28.0+dfsg-2build1) ... 263s Selecting previously unselected package r-bioc-rhdf5filters. 263s Preparing to unpack .../189-r-bioc-rhdf5filters_1.18.0+dfsg-2_amd64.deb ... 263s Unpacking r-bioc-rhdf5filters (1.18.0+dfsg-2) ... 263s Selecting previously unselected package r-bioc-rhdf5. 263s Preparing to unpack .../190-r-bioc-rhdf5_2.50.2+dfsg-1build1_amd64.deb ... 263s Unpacking r-bioc-rhdf5 (2.50.2+dfsg-1build1) ... 264s Selecting previously unselected package r-cran-jsonlite. 264s Preparing to unpack .../191-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 264s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 264s Selecting previously unselected package r-cran-pkgkitten. 264s Preparing to unpack .../192-r-cran-pkgkitten_0.2.4-1_all.deb ... 264s Unpacking r-cran-pkgkitten (0.2.4-1) ... 264s Selecting previously unselected package r-cran-rcpp. 264s Preparing to unpack .../193-r-cran-rcpp_1.0.14-1_amd64.deb ... 264s Unpacking r-cran-rcpp (1.0.14-1) ... 264s Selecting previously unselected package r-bioc-alabaster.base. 264s Preparing to unpack .../194-r-bioc-alabaster.base_1.6.1+ds-2build1_amd64.deb ... 264s Unpacking r-bioc-alabaster.base (1.6.1+ds-2build1) ... 264s Selecting previously unselected package r-cran-lattice. 264s Preparing to unpack .../195-r-cran-lattice_0.22-6-1_amd64.deb ... 264s Unpacking r-cran-lattice (0.22-6-1) ... 264s Selecting previously unselected package r-cran-matrix. 264s Preparing to unpack .../196-r-cran-matrix_1.7-3-1_amd64.deb ... 264s Unpacking r-cran-matrix (1.7-3-1) ... 264s Selecting previously unselected package r-cran-matrixstats. 264s Preparing to unpack .../197-r-cran-matrixstats_1.5.0-1_amd64.deb ... 264s Unpacking r-cran-matrixstats (1.5.0-1) ... 264s Selecting previously unselected package r-bioc-matrixgenerics. 264s Preparing to unpack .../198-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 264s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 264s Selecting previously unselected package r-bioc-iranges. 264s Preparing to unpack .../199-r-bioc-iranges_2.40.1-2_amd64.deb ... 264s Unpacking r-bioc-iranges (2.40.1-2) ... 264s Selecting previously unselected package r-cran-abind. 264s Preparing to unpack .../200-r-cran-abind_1.4-8-1_all.deb ... 264s Unpacking r-cran-abind (1.4-8-1) ... 264s Selecting previously unselected package r-cran-crayon. 264s Preparing to unpack .../201-r-cran-crayon_1.5.3-1_all.deb ... 264s Unpacking r-cran-crayon (1.5.3-1) ... 264s Selecting previously unselected package r-bioc-s4arrays. 264s Preparing to unpack .../202-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 264s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 264s Selecting previously unselected package r-bioc-zlibbioc. 264s Preparing to unpack .../203-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 264s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 264s Selecting previously unselected package r-bioc-xvector. 264s Preparing to unpack .../204-r-bioc-xvector_0.46.0-2_amd64.deb ... 264s Unpacking r-bioc-xvector (0.46.0-2) ... 264s Selecting previously unselected package r-bioc-sparsearray. 264s Preparing to unpack .../205-r-bioc-sparsearray_1.6.2+dfsg-1_amd64.deb ... 264s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 264s Selecting previously unselected package r-bioc-delayedarray. 264s Preparing to unpack .../206-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 264s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 264s Selecting previously unselected package r-bioc-hdf5array. 264s Preparing to unpack .../207-r-bioc-hdf5array_1.34.0-2build1_amd64.deb ... 264s Unpacking r-bioc-hdf5array (1.34.0-2build1) ... 264s Selecting previously unselected package r-bioc-alabaster.matrix. 264s Preparing to unpack .../208-r-bioc-alabaster.matrix_1.6.1+ds-2_amd64.deb ... 264s Unpacking r-bioc-alabaster.matrix (1.6.1+ds-2) ... 265s Selecting previously unselected package r-bioc-assorthead. 265s Preparing to unpack .../209-r-bioc-assorthead_1.0.1+ds-2_all.deb ... 265s Unpacking r-bioc-assorthead (1.0.1+ds-2) ... 265s Selecting previously unselected package r-bioc-beachmat. 265s Preparing to unpack .../210-r-bioc-beachmat_2.22.0+ds-2_amd64.deb ... 265s Unpacking r-bioc-beachmat (2.22.0+ds-2) ... 265s Selecting previously unselected package r-cran-formatr. 265s Preparing to unpack .../211-r-cran-formatr_1.14-2_all.deb ... 265s Unpacking r-cran-formatr (1.14-2) ... 265s Selecting previously unselected package r-cran-lambda.r. 265s Preparing to unpack .../212-r-cran-lambda.r_1.2.4-2build1_all.deb ... 265s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 265s Selecting previously unselected package r-cran-futile.options. 265s Preparing to unpack .../213-r-cran-futile.options_1.0.1-3build1_all.deb ... 265s Unpacking r-cran-futile.options (1.0.1-3build1) ... 265s Selecting previously unselected package r-cran-futile.logger. 265s Preparing to unpack .../214-r-cran-futile.logger_1.4.3-4build1_all.deb ... 265s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 265s Selecting previously unselected package r-cran-snow. 265s Preparing to unpack .../215-r-cran-snow_1%3a0.4.4-2_all.deb ... 265s Unpacking r-cran-snow (1:0.4.4-2) ... 265s Selecting previously unselected package r-cran-codetools. 265s Preparing to unpack .../216-r-cran-codetools_0.2-20-1_all.deb ... 265s Unpacking r-cran-codetools (0.2-20-1) ... 265s Selecting previously unselected package r-cran-bh. 265s Preparing to unpack .../217-r-cran-bh_1.84.0-1_all.deb ... 265s Unpacking r-cran-bh (1.84.0-1) ... 265s Selecting previously unselected package r-cran-cpp11. 265s Preparing to unpack .../218-r-cran-cpp11_0.5.2-1_all.deb ... 265s Unpacking r-cran-cpp11 (0.5.2-1) ... 265s Selecting previously unselected package r-bioc-biocparallel. 265s Preparing to unpack .../219-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 265s Unpacking r-bioc-biocparallel (1.40.0-2) ... 265s Selecting previously unselected package r-bioc-scaledmatrix. 265s Preparing to unpack .../220-r-bioc-scaledmatrix_1.14.0+dfsg-2_all.deb ... 265s Unpacking r-bioc-scaledmatrix (1.14.0+dfsg-2) ... 265s Selecting previously unselected package r-cran-irlba. 265s Preparing to unpack .../221-r-cran-irlba_2.3.5.1-4_amd64.deb ... 265s Unpacking r-cran-irlba (2.3.5.1-4) ... 265s Selecting previously unselected package r-cran-rsvd. 265s Preparing to unpack .../222-r-cran-rsvd_1.0.5-1_all.deb ... 265s Unpacking r-cran-rsvd (1.0.5-1) ... 265s Selecting previously unselected package r-bioc-biocsingular. 265s Preparing to unpack .../223-r-bioc-biocsingular_1.22.0+ds-2_amd64.deb ... 265s Unpacking r-bioc-biocsingular (1.22.0+ds-2) ... 265s Selecting previously unselected package r-cran-base64enc. 265s Preparing to unpack .../224-r-cran-base64enc_0.1-3-3_amd64.deb ... 265s Unpacking r-cran-base64enc (0.1-3-3) ... 265s Selecting previously unselected package r-cran-digest. 265s Preparing to unpack .../225-r-cran-digest_0.6.37-1_amd64.deb ... 265s Unpacking r-cran-digest (0.6.37-1) ... 265s Selecting previously unselected package r-cran-fastmap. 265s Preparing to unpack .../226-r-cran-fastmap_1.2.0-1_amd64.deb ... 265s Unpacking r-cran-fastmap (1.2.0-1) ... 265s Selecting previously unselected package r-cran-rlang. 265s Preparing to unpack .../227-r-cran-rlang_1.1.5-1_amd64.deb ... 265s Unpacking r-cran-rlang (1.1.5-1) ... 265s Selecting previously unselected package r-cran-htmltools. 265s Preparing to unpack .../228-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 265s Unpacking r-cran-htmltools (0.5.8.1-1) ... 266s Selecting previously unselected package r-cran-evaluate. 266s Preparing to unpack .../229-r-cran-evaluate_1.0.3-1_all.deb ... 266s Unpacking r-cran-evaluate (1.0.3-1) ... 266s Selecting previously unselected package r-cran-xfun. 266s Preparing to unpack .../230-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 266s Unpacking r-cran-xfun (0.51+dfsg-1) ... 266s Selecting previously unselected package r-cran-highr. 266s Preparing to unpack .../231-r-cran-highr_0.11+dfsg-1_all.deb ... 266s Unpacking r-cran-highr (0.11+dfsg-1) ... 266s Selecting previously unselected package r-cran-yaml. 266s Preparing to unpack .../232-r-cran-yaml_2.3.10-1_amd64.deb ... 266s Unpacking r-cran-yaml (2.3.10-1) ... 266s Selecting previously unselected package libjs-mathjax. 266s Preparing to unpack .../233-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 266s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 266s Selecting previously unselected package r-cran-knitr. 266s Preparing to unpack .../234-r-cran-knitr_1.49+dfsg-1_all.deb ... 266s Unpacking r-cran-knitr (1.49+dfsg-1) ... 266s Selecting previously unselected package r-cran-cachem. 266s Preparing to unpack .../235-r-cran-cachem_1.1.0-1_amd64.deb ... 266s Unpacking r-cran-cachem (1.1.0-1) ... 266s Selecting previously unselected package r-cran-jquerylib. 266s Preparing to unpack .../236-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 266s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 267s Selecting previously unselected package r-cran-cli. 267s Preparing to unpack .../237-r-cran-cli_3.6.4-1_amd64.deb ... 267s Unpacking r-cran-cli (3.6.4-1) ... 267s Selecting previously unselected package r-cran-glue. 267s Preparing to unpack .../238-r-cran-glue_1.8.0-1_amd64.deb ... 267s Unpacking r-cran-glue (1.8.0-1) ... 267s Selecting previously unselected package r-cran-lifecycle. 267s Preparing to unpack .../239-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 267s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 267s Selecting previously unselected package r-cran-memoise. 267s Preparing to unpack .../240-r-cran-memoise_2.0.1-1_all.deb ... 267s Unpacking r-cran-memoise (2.0.1-1) ... 267s Selecting previously unselected package r-cran-mime. 267s Preparing to unpack .../241-r-cran-mime_0.12-2_amd64.deb ... 267s Unpacking r-cran-mime (0.12-2) ... 267s Selecting previously unselected package r-cran-fs. 267s Preparing to unpack .../242-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 267s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 267s Selecting previously unselected package r-cran-r6. 267s Preparing to unpack .../243-r-cran-r6_2.6.1-1_all.deb ... 267s Unpacking r-cran-r6 (2.6.1-1) ... 267s Selecting previously unselected package r-cran-rappdirs. 267s Preparing to unpack .../244-r-cran-rappdirs_0.3.3-1_amd64.deb ... 267s Unpacking r-cran-rappdirs (0.3.3-1) ... 267s Selecting previously unselected package r-cran-sass. 267s Preparing to unpack .../245-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 267s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 267s Selecting previously unselected package r-cran-bslib. 267s Preparing to unpack .../246-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 267s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 267s Selecting previously unselected package r-cran-fontawesome. 267s Preparing to unpack .../247-r-cran-fontawesome_0.5.3-1_all.deb ... 267s Unpacking r-cran-fontawesome (0.5.3-1) ... 267s Selecting previously unselected package r-cran-tinytex. 267s Preparing to unpack .../248-r-cran-tinytex_0.56-1_all.deb ... 267s Unpacking r-cran-tinytex (0.56-1) ... 267s Selecting previously unselected package libjs-modernizr. 267s Preparing to unpack .../249-libjs-modernizr_3.13.0-0.1_all.deb ... 267s Unpacking libjs-modernizr (3.13.0-0.1) ... 267s Selecting previously unselected package r-cran-later. 267s Preparing to unpack .../250-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 267s Unpacking r-cran-later (1.4.1+dfsg-1) ... 267s Selecting previously unselected package r-cran-magrittr. 267s Preparing to unpack .../251-r-cran-magrittr_2.0.3-1_amd64.deb ... 267s Unpacking r-cran-magrittr (2.0.3-1) ... 267s Selecting previously unselected package r-cran-promises. 267s Preparing to unpack .../252-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 267s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 267s Selecting previously unselected package r-cran-httpuv. 268s Preparing to unpack .../253-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 268s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 268s Selecting previously unselected package r-cran-xtable. 268s Preparing to unpack .../254-r-cran-xtable_1%3a1.8-4-2_all.deb ... 268s Unpacking r-cran-xtable (1:1.8-4-2) ... 268s Selecting previously unselected package r-cran-sourcetools. 268s Preparing to unpack .../255-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 268s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 268s Selecting previously unselected package r-cran-withr. 268s Preparing to unpack .../256-r-cran-withr_3.0.2+dfsg-1_all.deb ... 268s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 268s Selecting previously unselected package r-cran-commonmark. 268s Preparing to unpack .../257-r-cran-commonmark_1.9.2-2_amd64.deb ... 268s Unpacking r-cran-commonmark (1.9.2-2) ... 268s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 268s Preparing to unpack .../258-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 268s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 268s Selecting previously unselected package r-cran-shiny. 268s Preparing to unpack .../259-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 268s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 268s Selecting previously unselected package r-cran-rmarkdown. 268s Preparing to unpack .../260-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 268s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 268s Selecting previously unselected package r-cran-bookdown. 268s Preparing to unpack .../261-r-cran-bookdown_0.42+dfsg-1_all.deb ... 268s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 268s Selecting previously unselected package r-cran-biocmanager. 268s Preparing to unpack .../262-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 268s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 268s Selecting previously unselected package tex-common. 268s Preparing to unpack .../263-tex-common_6.19_all.deb ... 268s Unpacking tex-common (6.19) ... 268s Selecting previously unselected package t1utils. 268s Preparing to unpack .../264-t1utils_1.41-4build3_amd64.deb ... 268s Unpacking t1utils (1.41-4build3) ... 268s Selecting previously unselected package texlive-binaries. 268s Preparing to unpack .../265-texlive-binaries_2024.20240313.70630+ds-6_amd64.deb ... 268s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ... 269s Selecting previously unselected package texlive-base. 269s Preparing to unpack .../266-texlive-base_2024.20250114-1_all.deb ... 269s Unpacking texlive-base (2024.20250114-1) ... 270s Selecting previously unselected package texlive-latex-base. 270s Preparing to unpack .../267-texlive-latex-base_2024.20250114-1_all.deb ... 270s Unpacking texlive-latex-base (2024.20250114-1) ... 270s Selecting previously unselected package texlive-bibtex-extra. 270s Preparing to unpack .../268-texlive-bibtex-extra_2024.20250114-1_all.deb ... 270s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 272s Selecting previously unselected package r-bioc-biocversion. 272s Preparing to unpack .../269-r-bioc-biocversion_3.20.0-2_all.deb ... 272s Unpacking r-bioc-biocversion (3.20.0-2) ... 272s Selecting previously unselected package r-bioc-biocstyle. 272s Preparing to unpack .../270-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 272s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 272s Selecting previously unselected package r-bioc-residualmatrix. 272s Preparing to unpack .../271-r-bioc-residualmatrix_1.16.0+dfsg-2_all.deb ... 272s Unpacking r-bioc-residualmatrix (1.16.0+dfsg-2) ... 272s Selecting previously unselected package r-cran-brio. 272s Preparing to unpack .../272-r-cran-brio_1.1.5-1_amd64.deb ... 272s Unpacking r-cran-brio (1.1.5-1) ... 272s Selecting previously unselected package r-cran-ps. 272s Preparing to unpack .../273-r-cran-ps_1.9.0-1_amd64.deb ... 272s Unpacking r-cran-ps (1.9.0-1) ... 272s Selecting previously unselected package r-cran-processx. 272s Preparing to unpack .../274-r-cran-processx_3.8.6-1_amd64.deb ... 272s Unpacking r-cran-processx (3.8.6-1) ... 272s Selecting previously unselected package r-cran-callr. 272s Preparing to unpack .../275-r-cran-callr_3.7.6-1_all.deb ... 272s Unpacking r-cran-callr (3.7.6-1) ... 272s Selecting previously unselected package r-cran-desc. 272s Preparing to unpack .../276-r-cran-desc_1.4.3-1_all.deb ... 272s Unpacking r-cran-desc (1.4.3-1) ... 272s Selecting previously unselected package r-cran-diffobj. 272s Preparing to unpack .../277-r-cran-diffobj_0.3.5-1_amd64.deb ... 272s Unpacking r-cran-diffobj (0.3.5-1) ... 272s Selecting previously unselected package r-cran-pkgbuild. 272s Preparing to unpack .../278-r-cran-pkgbuild_1.4.6-1_all.deb ... 272s Unpacking r-cran-pkgbuild (1.4.6-1) ... 272s Selecting previously unselected package r-cran-rprojroot. 272s Preparing to unpack .../279-r-cran-rprojroot_2.0.4-2_all.deb ... 272s Unpacking r-cran-rprojroot (2.0.4-2) ... 272s Selecting previously unselected package r-cran-pkgload. 272s Preparing to unpack .../280-r-cran-pkgload_1.4.0-1_all.deb ... 272s Unpacking r-cran-pkgload (1.4.0-1) ... 272s Selecting previously unselected package r-cran-praise. 272s Preparing to unpack .../281-r-cran-praise_1.0.0-4build1_all.deb ... 272s Unpacking r-cran-praise (1.0.0-4build1) ... 272s Selecting previously unselected package r-cran-waldo. 272s Preparing 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update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 278s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 278s Setting up texlive-bibtex-extra (2024.20250114-1) ... 278s Setting up r-cran-rsvd (1.0.5-1) ... 278s Setting up r-bioc-alabaster.base (1.6.1+ds-2build1) ... 278s Setting up r-cran-memoise (2.0.1-1) ... 278s Setting up r-cran-promises (1.3.2+dfsg-1) ... 278s Setting up r-bioc-xvector (0.46.0-2) ... 278s Setting up r-cran-pkgbuild (1.4.6-1) ... 278s Setting up r-cran-pkgload (1.4.0-1) ... 278s Setting up r-base-dev (4.4.3-1) ... 278s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 278s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 278s Setting up r-cran-testthat (3.2.3-1) ... 278s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 278s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 278s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 278s Setting up r-bioc-hdf5array (1.34.0-2build1) ... 278s Setting up r-bioc-residualmatrix (1.16.0+dfsg-2) ... 278s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 278s Setting up r-bioc-alabaster.matrix (1.6.1+ds-2) ... 278s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 278s Setting up r-bioc-beachmat (2.22.0+ds-2) ... 278s Setting up r-bioc-scaledmatrix (1.14.0+dfsg-2) ... 278s Setting up r-cran-bookdown (0.42+dfsg-1) ... 278s Setting up r-bioc-biocsingular (1.22.0+ds-2) ... 278s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 278s Processing triggers for libc-bin (2.41-1ubuntu2) ... 278s Processing triggers for man-db (2.13.0-1) ... 280s Processing triggers for install-info (7.1.1-1) ... 281s Processing triggers for tex-common (6.19) ... 281s Running updmap-sys. This may take some time... done. 281s Running mktexlsr /var/lib/texmf ... done. 281s Building format(s) --all. 312s This may take some time... done. 313s autopkgtest [22:01:59]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 313s autopkgtest [22:01:59]: test pkg-r-autopkgtest: [----------------------- 313s Test: Try to load the R library alabaster.matrix 313s 313s R version 4.4.3 (2025-02-28) -- "Trophy Case" 313s Copyright (C) 2025 The R Foundation for Statistical Computing 313s Platform: x86_64-pc-linux-gnu 313s 313s R is free software and comes with ABSOLUTELY NO WARRANTY. 313s You are welcome to redistribute it under certain conditions. 313s Type 'license()' or 'licence()' for distribution details. 313s 313s R is a collaborative project with many contributors. 313s Type 'contributors()' for more information and 313s 'citation()' on how to cite R or R packages in publications. 313s 313s Type 'demo()' for some demos, 'help()' for on-line help, or 313s 'help.start()' for an HTML browser interface to help. 313s Type 'q()' to quit R. 313s 313s > library('alabaster.matrix') 313s Loading required package: alabaster.base 318s > 318s > 318s Other tests are currently unsupported! 318s They will be progressively added. 319s autopkgtest [22:02:05]: test pkg-r-autopkgtest: -----------------------] 319s autopkgtest [22:02:05]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 319s pkg-r-autopkgtest PASS 319s autopkgtest [22:02:05]: @@@@@@@@@@@@@@@@@@@@ summary 319s pkg-r-autopkgtest PASS 336s nova [W] Skipping flock for amd64 336s Creating nova instance adt-plucky-amd64-r-bioc-alabaster.matrix-20250315-215646-juju-7f2275-prod-proposed-migration-environment-20-eb58b0d9-43b2-4406-bbdc-12df5c4c5811 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 336s nova [W] Timed out waiting for 86077e0a-e32e-4333-bd86-66f5d4055a1b to get deleted.