0s autopkgtest [13:51:18]: starting date and time: 2024-11-13 13:51:18+0000 0s autopkgtest [13:51:18]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [13:51:18]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.njrlvawp/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-sqt --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-16.secgroup --name adt-plucky-amd64-python-sqt-20241113-135118-juju-7f2275-prod-proposed-migration-environment-20-cd92e0c0-c993-4f4a-9abf-7b48c6eb52af --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 1293s autopkgtest [14:12:51]: testbed dpkg architecture: amd64 1294s autopkgtest [14:12:52]: testbed apt version: 2.9.8 1294s autopkgtest [14:12:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup 1294s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 1295s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [104 kB] 1295s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 1295s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [967 kB] 1295s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.5 kB] 1295s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [131 kB] 1295s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [79.6 kB] 1295s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 1295s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [721 kB] 1295s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [281 kB] 1295s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [13.3 kB] 1295s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [38.5 kB] 1295s Fetched 2466 kB in 1s (2982 kB/s) 1295s Reading package lists... 1298s Reading package lists... 1298s Building dependency tree... 1298s Reading state information... 1298s Calculating upgrade... 1298s The following NEW packages will be installed: 1298s python3.13-gdbm 1298s The following packages will be upgraded: 1298s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 1298s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 1298s Need to get 253 kB of archives. 1298s After this operation, 147 kB of additional disk space will be used. 1298s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 1298s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 1298s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 1298s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 1298s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 1298s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.23.2-5ubuntu4 [152 kB] 1299s Fetched 253 kB in 0s (614 kB/s) 1299s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 1299s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 1299s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 1299s Setting up python3-minimal (3.12.7-1) ... 1299s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 1299s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 1299s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 1299s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 1299s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 1299s Selecting previously unselected package python3.13-gdbm. 1299s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 1299s Unpacking python3.13-gdbm (3.13.0-2) ... 1299s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 1299s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 1299s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_amd64.deb ... 1299s Unpacking libgpgme11t64:amd64 (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 1299s Setting up libgpgme11t64:amd64 (1.23.2-5ubuntu4) ... 1299s Setting up python3.13-gdbm (3.13.0-2) ... 1299s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 1299s Setting up python3 (3.12.7-1) ... 1299s Setting up python3-gdbm:amd64 (3.12.7-1) ... 1299s Processing triggers for man-db (2.12.1-3) ... 1300s Processing triggers for libc-bin (2.40-1ubuntu3) ... 1300s Reading package lists... 1300s Building dependency tree... 1300s Reading state information... 1300s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1301s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 1301s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 1301s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 1301s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 1302s Reading package lists... 1302s Reading package lists... 1302s Building dependency tree... 1302s Reading state information... 1302s Calculating upgrade... 1302s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1302s Reading package lists... 1302s Building dependency tree... 1302s Reading state information... 1303s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1305s autopkgtest [14:13:03]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 1305s autopkgtest [14:13:03]: @@@@@@@@@@@@@@@@@@@@ apt-source python-sqt 1307s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-sqt 0.8.0-8build1 (dsc) [2199 B] 1307s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-sqt 0.8.0-8build1 (tar) [116 kB] 1307s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-sqt 0.8.0-8build1 (diff) [7048 B] 1307s gpgv: Signature made Wed Apr 10 17:14:42 2024 UTC 1307s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 1307s gpgv: Can't check signature: No public key 1307s dpkg-source: warning: cannot verify inline signature for ./python-sqt_0.8.0-8build1.dsc: no acceptable signature found 1307s autopkgtest [14:13:05]: testing package python-sqt version 0.8.0-8build1 1308s autopkgtest [14:13:06]: build not needed 1308s autopkgtest [14:13:06]: test pybuild-autopkgtest: preparing testbed 1312s Reading package lists... 1312s Building dependency tree... 1312s Reading state information... 1312s Starting pkgProblemResolver with broken count: 0 1312s Starting 2 pkgProblemResolver with broken count: 0 1312s Done 1313s The following additional packages will be installed: 1313s autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14 1313s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper debugedit 1313s dh-autoreconf dh-python dh-strip-nondeterminism dwz fontconfig-config 1313s fonts-dejavu-core fonts-dejavu-mono fonts-lyx g++ g++-14 1313s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 1313s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian 1313s libarchive-zip-perl libasan8 libblas3 libcc1-0 libdebhelper-perl libdeflate0 1313s libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libgcc-14-dev 1313s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhts3t64 libhtscodecs2 1313s libhwasan0 libimagequant0 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 1313s libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 1313s liblbfgsb0 liblcms2-2 liblerc4 liblsan0 libmpc3 libopenjp2-7 1313s libpython3-all-dev libpython3-dev libpython3.12-dev libpython3.13 1313s libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 1313s libquadmath0 libraqm0 libsharpyuv0 libstdc++-14-dev libtcl8.6 libtiff6 1313s libtk8.6 libtool libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 1313s libxft2 libxrender1 libxslt1.1 libxss1 m4 pigz po-debconf 1313s pybuild-plugin-autopkgtest python-matplotlib-data python3-all 1313s python3-all-dev python3-appdirs python3-brotli python3-contourpy 1313s python3-cutadapt python3-cycler python3-dateutil python3-decorator 1313s python3-dev python3-dnaio python3-fonttools python3-fs python3-iniconfig 1313s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 1313s python3-mpmath python3-numpy python3-packaging python3-pandas 1313s python3-pandas-lib python3-pil python3-pil.imagetk python3-pluggy 1313s python3-pysam python3-pytest python3-scipy python3-seaborn python3-six 1313s python3-sqt python3-sympy python3-tk python3-tz python3-ufolib2 1313s python3-unicodedata2 python3-xopen python3.12-dev python3.12-tk python3.13 1313s python3.13-dev python3.13-minimal python3.13-tk tk8.6-blt2.5 unicode-data 1313s x11-common zlib1g-dev 1313s Suggested packages: 1313s autoconf-archive gnu-standards autoconf-doc blt-demo cpp-doc gcc-14-locales 1313s cpp-14-doc cython-doc dh-make flit python3-build python3-installer 1313s python3-wheel g++-multilib g++-14-multilib gcc-14-doc gcc-multilib 1313s manpages-dev flex bison gdb gcc-doc gcc-14-multilib gdb-x86-64-linux-gnu 1313s gettext-doc libasprintf-dev libgettextpo-dev libjs-jquery-ui-docs 1313s liblcms2-utils libstdc++-14-doc tcl8.6 tk8.6 libtool-doc gfortran 1313s | fortran95-compiler gcj-jdk m4-doc libmail-box-perl python-cycler-doc 1313s python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript 1313s gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc 1313s python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip 1313s python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc 1313s python3-gmpy2 gfortran python-numpy-doc python-pandas-doc 1313s python3-statsmodels python-pil-doc python-scipy-doc texlive-fonts-extra 1313s python-sympy-doc tix python3-tk-dbg python3.13-venv python3.13-doc 1313s binfmt-support 1313s Recommended packages: 1313s libarchive-cpio-perl javascript-common libltdl-dev libmail-sendmail-perl 1313s python3-bs4 python3-cssselect python3-html5lib python3-bottleneck 1313s python3-numexpr python3-odf python3-openpyxl python3-tables python3-numba 1313s python3-olefile fonts-noto-color-emoji isympy-common 1313s The following NEW packages will be installed: 1313s autoconf automake autopkgtest-satdep autopoint autotools-dev blt 1313s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 1313s cython3 debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism 1313s dwz fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx g++ 1313s g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 1313s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian 1313s libarchive-zip-perl libasan8 libblas3 libcc1-0 libdebhelper-perl libdeflate0 1313s libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libgcc-14-dev 1313s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhts3t64 libhtscodecs2 1313s libhwasan0 libimagequant0 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 1313s libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 1313s liblbfgsb0 liblcms2-2 liblerc4 liblsan0 libmpc3 libopenjp2-7 1313s libpython3-all-dev libpython3-dev libpython3.12-dev libpython3.13 1313s libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 1313s libquadmath0 libraqm0 libsharpyuv0 libstdc++-14-dev libtcl8.6 libtiff6 1313s libtk8.6 libtool libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 1313s libxft2 libxrender1 libxslt1.1 libxss1 m4 pigz po-debconf 1313s pybuild-plugin-autopkgtest python-matplotlib-data python3-all 1313s python3-all-dev python3-appdirs python3-brotli python3-contourpy 1313s python3-cutadapt python3-cycler python3-dateutil python3-decorator 1313s python3-dev python3-dnaio python3-fonttools python3-fs python3-iniconfig 1313s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 1313s python3-mpmath python3-numpy python3-packaging python3-pandas 1313s python3-pandas-lib python3-pil python3-pil.imagetk python3-pluggy 1313s python3-pysam python3-pytest python3-scipy python3-seaborn python3-six 1313s python3-sqt python3-sympy python3-tk python3-tz python3-ufolib2 1313s python3-unicodedata2 python3-xopen python3.12-dev python3.12-tk python3.13 1313s python3.13-dev python3.13-minimal python3.13-tk tk8.6-blt2.5 unicode-data 1313s x11-common zlib1g-dev 1313s 0 upgraded, 144 newly installed, 0 to remove and 0 not upgraded. 1313s Need to get 167 MB/167 MB of archives. 1313s After this operation, 674 MB of additional disk space will be used. 1313s Get:1 /tmp/autopkgtest.sGYiD4/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [816 B] 1313s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 1313s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 1314s Get:4 http://ftpmaster.internal/ubuntu plucky/universe amd64 pigz amd64 2.8-1 [65.6 kB] 1314s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-4build1 [244 kB] 1314s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB] 1314s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB] 1314s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 1314s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.22.5-2 [616 kB] 1314s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1085 kB] 1314s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 1314s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 1314s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 1314s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 1314s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 1314s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 1314s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 1314s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 1314s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.15-1 [862 kB] 1314s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 1314s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 1314s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 1314s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 1314s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 1314s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 1314s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 1314s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 1314s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 1314s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 1314s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 1314s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 1314s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 1314s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 1314s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 1314s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 1314s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 1314s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 1314s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 1315s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 1315s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 1315s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 1315s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 1315s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 1315s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 1315s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 1315s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 1315s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 1315s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 cython3 amd64 3.0.11+dfsg-1ubuntu1 [2491 kB] 1315s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 1315s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.4.7-7build1 [166 kB] 1315s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB] 1315s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 1315s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 1316s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 1316s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-1 [46.9 kB] 1316s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB] 1316s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.22.5-2 [948 kB] 1316s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 1316s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 1316s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.20ubuntu1 [893 kB] 1316s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20241024 [112 kB] 1316s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.2.1-1 [171 kB] 1316s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 1316s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 1316s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1-dev amd64 2.6.2-2 [140 kB] 1316s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 1316s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 1316s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.0.1-1 [540 kB] 1316s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhtscodecs2 amd64 1.6.1-1 [132 kB] 1316s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhts3t64 amd64 1.20+ds-1 [439 kB] 1316s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 1316s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 1316s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 1316s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 1316s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 1316s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 1316s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 1316s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 1316s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 1316s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 1316s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu2 [179 kB] 1316s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 1316s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.12-dev amd64 3.12.7-3 [5699 kB] 1316s Get:84 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-dev amd64 3.12.7-1 [10.3 kB] 1316s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 1316s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.0-2 [2321 kB] 1317s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-dev amd64 3.13.0-2 [5488 kB] 1317s Get:88 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-all-dev amd64 3.12.7-1 [916 B] 1317s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 1317s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 1317s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 1317s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 1317s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 1317s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 1317s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 1317s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 1317s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu1 [169 kB] 1317s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-autopkgtest all 6.20241024 [1746 B] 1317s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-matplotlib-data all 3.8.3-3 [2928 kB] 1317s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 1317s Get:101 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 1317s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB] 1317s Get:103 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-dev amd64 3.12.7-1 [26.7 kB] 1317s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-dev amd64 3.13.0-2 [507 kB] 1318s Get:105 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all-dev amd64 3.12.7-1 [914 B] 1318s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 1318s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 1318s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 1318s Get:109 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.0-2 [217 kB] 1318s Get:110 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-xopen all 1.7.0-2 [17.0 kB] 1318s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-dnaio amd64 1.2.2-1 [90.5 kB] 1318s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cutadapt amd64 4.7-2 [183 kB] 1318s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 1318s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 1318s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 1318s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 1318s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB] 1319s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 1319s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 1319s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB] 1319s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB] 1319s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 1319s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.0-1 [1282 kB] 1319s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 1319s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build1 [362 kB] 1319s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 1320s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 1320s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 1320s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-2 [55.1 kB] 1320s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu1 [184 kB] 1320s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 10.4.0-1ubuntu1 [463 kB] 1320s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.7-3 [116 kB] 1320s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-tk amd64 3.13.0-2 [106 kB] 1320s Get:134 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-tk amd64 3.12.7-1 [9752 B] 1320s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 10.4.0-1ubuntu1 [9394 B] 1320s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 1320s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib amd64 3.8.3-3 [4545 kB] 1320s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-5 [5087 kB] 1320s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-5 [3112 kB] 1320s Get:140 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 1320s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pysam amd64 0.22.1+ds-2 [3504 kB] 1320s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 1320s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-seaborn all 0.13.2-4 [225 kB] 1320s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sqt amd64 0.8.0-8build1 [139 kB] 1320s Fetched 167 MB in 7s (24.3 MB/s) 1320s Selecting previously unselected package libpython3.13-minimal:amd64. 1320s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75548 files and directories currently installed.) 1320s Preparing to unpack .../000-libpython3.13-minimal_3.13.0-2_amd64.deb ... 1320s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 1320s Selecting previously unselected package python3.13-minimal. 1320s Preparing to unpack .../001-python3.13-minimal_3.13.0-2_amd64.deb ... 1320s Unpacking python3.13-minimal (3.13.0-2) ... 1320s Selecting previously unselected package pigz. 1320s Preparing to unpack .../002-pigz_2.8-1_amd64.deb ... 1320s Unpacking pigz (2.8-1) ... 1320s Selecting previously unselected package m4. 1320s Preparing to unpack .../003-m4_1.4.19-4build1_amd64.deb ... 1320s Unpacking m4 (1.4.19-4build1) ... 1320s Selecting previously unselected package autoconf. 1320s Preparing to unpack .../004-autoconf_2.72-3_all.deb ... 1320s Unpacking autoconf (2.72-3) ... 1320s Selecting previously unselected package autotools-dev. 1320s Preparing to unpack .../005-autotools-dev_20220109.1_all.deb ... 1320s Unpacking autotools-dev (20220109.1) ... 1320s Selecting previously unselected package automake. 1320s Preparing to unpack .../006-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 1320s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 1320s Selecting previously unselected package autopoint. 1320s Preparing to unpack .../007-autopoint_0.22.5-2_all.deb ... 1320s Unpacking autopoint (0.22.5-2) ... 1320s Selecting previously unselected package libtcl8.6:amd64. 1320s Preparing to unpack .../008-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... 1320s Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... 1320s Selecting previously unselected package fonts-dejavu-mono. 1320s Preparing to unpack .../009-fonts-dejavu-mono_2.37-8_all.deb ... 1320s Unpacking fonts-dejavu-mono (2.37-8) ... 1320s Selecting previously unselected package fonts-dejavu-core. 1320s Preparing to unpack .../010-fonts-dejavu-core_2.37-8_all.deb ... 1321s Unpacking fonts-dejavu-core (2.37-8) ... 1321s Selecting previously unselected package fontconfig-config. 1321s Preparing to unpack .../011-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 1321s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 1321s Selecting previously unselected package libfontconfig1:amd64. 1321s Preparing to unpack .../012-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 1321s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 1321s Selecting previously unselected package libxrender1:amd64. 1321s Preparing to unpack .../013-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 1321s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 1321s Selecting previously unselected package libxft2:amd64. 1321s Preparing to unpack .../014-libxft2_2.3.6-1build1_amd64.deb ... 1321s Unpacking libxft2:amd64 (2.3.6-1build1) ... 1321s Selecting previously unselected package x11-common. 1321s Preparing to unpack .../015-x11-common_1%3a7.7+23ubuntu3_all.deb ... 1321s Unpacking x11-common (1:7.7+23ubuntu3) ... 1321s Selecting previously unselected package libxss1:amd64. 1321s Preparing to unpack .../016-libxss1_1%3a1.2.3-1build3_amd64.deb ... 1321s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 1321s Selecting previously unselected package libtk8.6:amd64. 1321s Preparing to unpack .../017-libtk8.6_8.6.15-1_amd64.deb ... 1321s Unpacking libtk8.6:amd64 (8.6.15-1) ... 1321s Selecting previously unselected package tk8.6-blt2.5. 1321s Preparing to unpack .../018-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 1321s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 1321s Selecting previously unselected package blt. 1321s Preparing to unpack .../019-blt_2.5.3+dfsg-7build1_amd64.deb ... 1321s Unpacking blt (2.5.3+dfsg-7build1) ... 1321s Selecting previously unselected package libisl23:amd64. 1321s Preparing to unpack .../020-libisl23_0.27-1_amd64.deb ... 1321s Unpacking libisl23:amd64 (0.27-1) ... 1321s Selecting previously unselected package libmpc3:amd64. 1321s Preparing to unpack .../021-libmpc3_1.3.1-1build2_amd64.deb ... 1321s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 1321s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 1321s Preparing to unpack .../022-cpp-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 1321s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 1321s Selecting previously unselected package cpp-14. 1321s Preparing to unpack .../023-cpp-14_14.2.0-8ubuntu1_amd64.deb ... 1321s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 1321s Selecting previously unselected package cpp-x86-64-linux-gnu. 1321s Preparing to unpack .../024-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 1321s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 1321s Selecting previously unselected package cpp. 1321s Preparing to unpack .../025-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 1321s Unpacking cpp (4:14.1.0-2ubuntu1) ... 1321s Selecting previously unselected package libcc1-0:amd64. 1321s Preparing to unpack .../026-libcc1-0_14.2.0-8ubuntu1_amd64.deb ... 1321s Unpacking libcc1-0:amd64 (14.2.0-8ubuntu1) ... 1321s Selecting previously unselected package libgomp1:amd64. 1321s Preparing to unpack .../027-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 1321s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 1321s Selecting previously unselected package libitm1:amd64. 1321s Preparing to unpack .../028-libitm1_14.2.0-8ubuntu1_amd64.deb ... 1321s Unpacking libitm1:amd64 (14.2.0-8ubuntu1) ... 1321s Selecting previously unselected package libasan8:amd64. 1321s Preparing to unpack .../029-libasan8_14.2.0-8ubuntu1_amd64.deb ... 1321s Unpacking libasan8:amd64 (14.2.0-8ubuntu1) ... 1321s Selecting previously unselected package liblsan0:amd64. 1321s Preparing to unpack .../030-liblsan0_14.2.0-8ubuntu1_amd64.deb ... 1321s Unpacking liblsan0:amd64 (14.2.0-8ubuntu1) ... 1321s Selecting previously unselected package libtsan2:amd64. 1321s Preparing to unpack .../031-libtsan2_14.2.0-8ubuntu1_amd64.deb ... 1321s Unpacking libtsan2:amd64 (14.2.0-8ubuntu1) ... 1321s Selecting previously unselected package libubsan1:amd64. 1321s Preparing to unpack .../032-libubsan1_14.2.0-8ubuntu1_amd64.deb ... 1321s Unpacking libubsan1:amd64 (14.2.0-8ubuntu1) ... 1322s Selecting previously unselected package libhwasan0:amd64. 1322s Preparing to unpack .../033-libhwasan0_14.2.0-8ubuntu1_amd64.deb ... 1322s Unpacking libhwasan0:amd64 (14.2.0-8ubuntu1) ... 1322s Selecting previously unselected package libquadmath0:amd64. 1322s Preparing to unpack .../034-libquadmath0_14.2.0-8ubuntu1_amd64.deb ... 1322s Unpacking libquadmath0:amd64 (14.2.0-8ubuntu1) ... 1322s Selecting previously unselected package libgcc-14-dev:amd64. 1322s Preparing to unpack .../035-libgcc-14-dev_14.2.0-8ubuntu1_amd64.deb ... 1322s Unpacking libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 1322s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 1322s Preparing to unpack .../036-gcc-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 1322s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 1322s Selecting previously unselected package gcc-14. 1322s Preparing to unpack .../037-gcc-14_14.2.0-8ubuntu1_amd64.deb ... 1322s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 1322s Selecting previously unselected package gcc-x86-64-linux-gnu. 1322s Preparing to unpack .../038-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 1322s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 1322s Selecting previously unselected package gcc. 1322s Preparing to unpack .../039-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 1322s Unpacking gcc (4:14.1.0-2ubuntu1) ... 1322s Selecting previously unselected package libstdc++-14-dev:amd64. 1322s Preparing to unpack .../040-libstdc++-14-dev_14.2.0-8ubuntu1_amd64.deb ... 1322s Unpacking libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 1322s Selecting previously unselected package g++-14-x86-64-linux-gnu. 1322s Preparing to unpack .../041-g++-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 1322s Unpacking g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 1322s Selecting previously unselected package g++-14. 1322s Preparing to unpack .../042-g++-14_14.2.0-8ubuntu1_amd64.deb ... 1322s Unpacking g++-14 (14.2.0-8ubuntu1) ... 1322s Selecting previously unselected package g++-x86-64-linux-gnu. 1322s Preparing to unpack .../043-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 1322s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 1322s Selecting previously unselected package g++. 1322s Preparing to unpack .../044-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 1322s Unpacking g++ (4:14.1.0-2ubuntu1) ... 1322s Selecting previously unselected package build-essential. 1322s Preparing to unpack .../045-build-essential_12.10ubuntu1_amd64.deb ... 1322s Unpacking build-essential (12.10ubuntu1) ... 1322s Selecting previously unselected package cython3. 1322s Preparing to unpack .../046-cython3_3.0.11+dfsg-1ubuntu1_amd64.deb ... 1322s Unpacking cython3 (3.0.11+dfsg-1ubuntu1) ... 1323s Selecting previously unselected package libdebhelper-perl. 1323s Preparing to unpack .../047-libdebhelper-perl_13.20ubuntu1_all.deb ... 1323s Unpacking libdebhelper-perl (13.20ubuntu1) ... 1323s Selecting previously unselected package libtool. 1323s Preparing to unpack .../048-libtool_2.4.7-7build1_all.deb ... 1323s Unpacking libtool (2.4.7-7build1) ... 1323s Selecting previously unselected package dh-autoreconf. 1323s Preparing to unpack .../049-dh-autoreconf_20_all.deb ... 1323s Unpacking dh-autoreconf (20) ... 1323s Selecting previously unselected package libarchive-zip-perl. 1323s Preparing to unpack .../050-libarchive-zip-perl_1.68-1_all.deb ... 1323s Unpacking libarchive-zip-perl (1.68-1) ... 1323s Selecting previously unselected package libfile-stripnondeterminism-perl. 1323s Preparing to unpack .../051-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... 1323s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... 1323s Selecting previously unselected package dh-strip-nondeterminism. 1323s Preparing to unpack .../052-dh-strip-nondeterminism_1.14.0-1_all.deb ... 1323s Unpacking dh-strip-nondeterminism (1.14.0-1) ... 1323s Selecting previously unselected package debugedit. 1323s Preparing to unpack .../053-debugedit_1%3a5.1-1_amd64.deb ... 1323s Unpacking debugedit (1:5.1-1) ... 1323s Selecting previously unselected package dwz. 1323s Preparing to unpack .../054-dwz_0.15-1build6_amd64.deb ... 1323s Unpacking dwz (0.15-1build6) ... 1323s Selecting previously unselected package gettext. 1323s Preparing to unpack .../055-gettext_0.22.5-2_amd64.deb ... 1323s Unpacking gettext (0.22.5-2) ... 1323s Selecting previously unselected package intltool-debian. 1323s Preparing to unpack .../056-intltool-debian_0.35.0+20060710.6_all.deb ... 1323s Unpacking intltool-debian (0.35.0+20060710.6) ... 1323s Selecting previously unselected package po-debconf. 1323s Preparing to unpack .../057-po-debconf_1.0.21+nmu1_all.deb ... 1323s Unpacking po-debconf (1.0.21+nmu1) ... 1323s Selecting previously unselected package debhelper. 1323s Preparing to unpack .../058-debhelper_13.20ubuntu1_all.deb ... 1323s Unpacking debhelper (13.20ubuntu1) ... 1323s Selecting previously unselected package dh-python. 1323s Preparing to unpack .../059-dh-python_6.20241024_all.deb ... 1323s Unpacking dh-python (6.20241024) ... 1323s Selecting previously unselected package fonts-lyx. 1323s Preparing to unpack .../060-fonts-lyx_2.4.2.1-1_all.deb ... 1323s Unpacking fonts-lyx (2.4.2.1-1) ... 1323s Selecting previously unselected package libblas3:amd64. 1323s Preparing to unpack .../061-libblas3_3.12.0-3build2_amd64.deb ... 1323s Unpacking libblas3:amd64 (3.12.0-3build2) ... 1323s Selecting previously unselected package libdeflate0:amd64. 1323s Preparing to unpack .../062-libdeflate0_1.22-1_amd64.deb ... 1323s Unpacking libdeflate0:amd64 (1.22-1) ... 1323s Selecting previously unselected package libexpat1-dev:amd64. 1323s Preparing to unpack .../063-libexpat1-dev_2.6.2-2_amd64.deb ... 1323s Unpacking libexpat1-dev:amd64 (2.6.2-2) ... 1323s Selecting previously unselected package libgfortran5:amd64. 1323s Preparing to unpack .../064-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 1323s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 1323s Selecting previously unselected package libgraphite2-3:amd64. 1323s Preparing to unpack .../065-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 1323s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 1323s Selecting previously unselected package libharfbuzz0b:amd64. 1323s Preparing to unpack .../066-libharfbuzz0b_10.0.1-1_amd64.deb ... 1323s Unpacking libharfbuzz0b:amd64 (10.0.1-1) ... 1323s Selecting previously unselected package libhtscodecs2:amd64. 1323s Preparing to unpack .../067-libhtscodecs2_1.6.1-1_amd64.deb ... 1323s Unpacking libhtscodecs2:amd64 (1.6.1-1) ... 1323s Selecting previously unselected package libhts3t64:amd64. 1323s Preparing to unpack .../068-libhts3t64_1.20+ds-1_amd64.deb ... 1323s Unpacking libhts3t64:amd64 (1.20+ds-1) ... 1323s Selecting previously unselected package libimagequant0:amd64. 1323s Preparing to unpack .../069-libimagequant0_2.18.0-1build1_amd64.deb ... 1323s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 1323s Selecting previously unselected package libjpeg-turbo8:amd64. 1323s Preparing to unpack .../070-libjpeg-turbo8_2.1.5-2ubuntu2_amd64.deb ... 1323s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 1323s Selecting previously unselected package libjpeg8:amd64. 1323s Preparing to unpack .../071-libjpeg8_8c-2ubuntu11_amd64.deb ... 1323s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 1323s Selecting previously unselected package libjs-jquery. 1323s Preparing to unpack .../072-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 1323s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 1323s Selecting previously unselected package libjs-jquery-ui. 1323s Preparing to unpack .../073-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 1323s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 1323s Selecting previously unselected package libjs-underscore. 1323s Preparing to unpack .../074-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 1323s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 1323s Selecting previously unselected package libjs-sphinxdoc. 1323s Preparing to unpack .../075-libjs-sphinxdoc_7.4.7-4_all.deb ... 1323s Unpacking libjs-sphinxdoc (7.4.7-4) ... 1323s Selecting previously unselected package liblapack3:amd64. 1323s Preparing to unpack .../076-liblapack3_3.12.0-3build2_amd64.deb ... 1323s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 1323s Selecting previously unselected package liblbfgsb0:amd64. 1323s Preparing to unpack .../077-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 1323s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 1323s Selecting previously unselected package liblcms2-2:amd64. 1324s Preparing to unpack .../078-liblcms2-2_2.16-2_amd64.deb ... 1324s Unpacking liblcms2-2:amd64 (2.16-2) ... 1324s Selecting previously unselected package liblerc4:amd64. 1324s Preparing to unpack .../079-liblerc4_4.0.0+ds-4ubuntu2_amd64.deb ... 1324s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu2) ... 1324s Selecting previously unselected package zlib1g-dev:amd64. 1324s Preparing to unpack .../080-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 1324s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 1324s Selecting previously unselected package libpython3.12-dev:amd64. 1324s Preparing to unpack .../081-libpython3.12-dev_3.12.7-3_amd64.deb ... 1324s Unpacking libpython3.12-dev:amd64 (3.12.7-3) ... 1324s Selecting previously unselected package libpython3-dev:amd64. 1324s Preparing to unpack .../082-libpython3-dev_3.12.7-1_amd64.deb ... 1324s Unpacking libpython3-dev:amd64 (3.12.7-1) ... 1324s Selecting previously unselected package libpython3.13-stdlib:amd64. 1324s Preparing to unpack .../083-libpython3.13-stdlib_3.13.0-2_amd64.deb ... 1324s Unpacking libpython3.13-stdlib:amd64 (3.13.0-2) ... 1324s Selecting previously unselected package libpython3.13:amd64. 1324s Preparing to unpack .../084-libpython3.13_3.13.0-2_amd64.deb ... 1324s Unpacking libpython3.13:amd64 (3.13.0-2) ... 1324s Selecting previously unselected package libpython3.13-dev:amd64. 1324s Preparing to unpack .../085-libpython3.13-dev_3.13.0-2_amd64.deb ... 1324s Unpacking libpython3.13-dev:amd64 (3.13.0-2) ... 1324s Selecting previously unselected package libpython3-all-dev:amd64. 1324s Preparing to unpack .../086-libpython3-all-dev_3.12.7-1_amd64.deb ... 1324s Unpacking libpython3-all-dev:amd64 (3.12.7-1) ... 1324s Selecting previously unselected package libqhull-r8.0:amd64. 1324s Preparing to unpack .../087-libqhull-r8.0_2020.2-6build1_amd64.deb ... 1324s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 1324s Selecting previously unselected package libraqm0:amd64. 1324s Preparing to unpack .../088-libraqm0_0.10.1-1build1_amd64.deb ... 1324s Unpacking libraqm0:amd64 (0.10.1-1build1) ... 1324s Selecting previously unselected package libsharpyuv0:amd64. 1324s Preparing to unpack .../089-libsharpyuv0_1.4.0-0.1_amd64.deb ... 1324s Unpacking libsharpyuv0:amd64 (1.4.0-0.1) ... 1324s Selecting previously unselected package libjbig0:amd64. 1324s Preparing to unpack .../090-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 1324s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 1324s Selecting previously unselected package libwebp7:amd64. 1324s Preparing to unpack .../091-libwebp7_1.4.0-0.1_amd64.deb ... 1324s Unpacking libwebp7:amd64 (1.4.0-0.1) ... 1324s Selecting previously unselected package libtiff6:amd64. 1324s Preparing to unpack .../092-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 1324s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 1324s Selecting previously unselected package libwebpdemux2:amd64. 1324s Preparing to unpack .../093-libwebpdemux2_1.4.0-0.1_amd64.deb ... 1324s Unpacking libwebpdemux2:amd64 (1.4.0-0.1) ... 1324s Selecting previously unselected package libwebpmux3:amd64. 1324s Preparing to unpack .../094-libwebpmux3_1.4.0-0.1_amd64.deb ... 1324s Unpacking libwebpmux3:amd64 (1.4.0-0.1) ... 1324s Selecting previously unselected package libxslt1.1:amd64. 1324s Preparing to unpack .../095-libxslt1.1_1.1.39-0exp1ubuntu1_amd64.deb ... 1324s Unpacking libxslt1.1:amd64 (1.1.39-0exp1ubuntu1) ... 1324s Selecting previously unselected package pybuild-plugin-autopkgtest. 1324s Preparing to unpack .../096-pybuild-plugin-autopkgtest_6.20241024_all.deb ... 1324s Unpacking pybuild-plugin-autopkgtest (6.20241024) ... 1324s Selecting previously unselected package python-matplotlib-data. 1324s Preparing to unpack .../097-python-matplotlib-data_3.8.3-3_all.deb ... 1324s Unpacking python-matplotlib-data (3.8.3-3) ... 1324s Selecting previously unselected package python3.13. 1324s Preparing to unpack .../098-python3.13_3.13.0-2_amd64.deb ... 1324s Unpacking python3.13 (3.13.0-2) ... 1324s Selecting previously unselected package python3-all. 1324s Preparing to unpack .../099-python3-all_3.12.7-1_amd64.deb ... 1324s Unpacking python3-all (3.12.7-1) ... 1324s Selecting previously unselected package python3.12-dev. 1324s Preparing to unpack .../100-python3.12-dev_3.12.7-3_amd64.deb ... 1324s Unpacking python3.12-dev (3.12.7-3) ... 1324s Selecting previously unselected package python3-dev. 1324s Preparing to unpack .../101-python3-dev_3.12.7-1_amd64.deb ... 1324s Unpacking python3-dev (3.12.7-1) ... 1324s Selecting previously unselected package python3.13-dev. 1324s Preparing to unpack .../102-python3.13-dev_3.13.0-2_amd64.deb ... 1324s Unpacking python3.13-dev (3.13.0-2) ... 1324s Selecting previously unselected package python3-all-dev. 1324s Preparing to unpack .../103-python3-all-dev_3.12.7-1_amd64.deb ... 1324s Unpacking python3-all-dev (3.12.7-1) ... 1324s Selecting previously unselected package python3-appdirs. 1324s Preparing to unpack .../104-python3-appdirs_1.4.4-4_all.deb ... 1324s Unpacking python3-appdirs (1.4.4-4) ... 1324s Selecting previously unselected package python3-brotli. 1324s Preparing to unpack .../105-python3-brotli_1.1.0-2build2_amd64.deb ... 1324s Unpacking python3-brotli (1.1.0-2build2) ... 1325s Selecting previously unselected package python3-numpy. 1325s Preparing to unpack .../106-python3-numpy_1%3a1.26.4+ds-11build1_amd64.deb ... 1325s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 1325s Selecting previously unselected package python3-contourpy. 1325s Preparing to unpack .../107-python3-contourpy_1.3.0-2_amd64.deb ... 1325s Unpacking python3-contourpy (1.3.0-2) ... 1325s Selecting previously unselected package python3-xopen. 1325s Preparing to unpack .../108-python3-xopen_1.7.0-2_all.deb ... 1325s Unpacking python3-xopen (1.7.0-2) ... 1325s Selecting previously unselected package python3-dnaio. 1325s Preparing to unpack .../109-python3-dnaio_1.2.2-1_amd64.deb ... 1325s Unpacking python3-dnaio (1.2.2-1) ... 1325s Selecting previously unselected package python3-cutadapt. 1325s Preparing to unpack .../110-python3-cutadapt_4.7-2_amd64.deb ... 1325s Unpacking python3-cutadapt (4.7-2) ... 1325s Selecting previously unselected package python3-cycler. 1325s Preparing to unpack .../111-python3-cycler_0.12.1-1_all.deb ... 1325s Unpacking python3-cycler (0.12.1-1) ... 1325s Selecting previously unselected package python3-six. 1325s Preparing to unpack .../112-python3-six_1.16.0-7_all.deb ... 1325s Unpacking python3-six (1.16.0-7) ... 1325s Selecting previously unselected package python3-dateutil. 1325s Preparing to unpack .../113-python3-dateutil_2.9.0-2_all.deb ... 1325s Unpacking python3-dateutil (2.9.0-2) ... 1325s Selecting previously unselected package python3-decorator. 1325s Preparing to unpack .../114-python3-decorator_5.1.1-5_all.deb ... 1325s Unpacking python3-decorator (5.1.1-5) ... 1325s Selecting previously unselected package python3-scipy. 1325s Preparing to unpack .../115-python3-scipy_1.13.1-5_amd64.deb ... 1325s Unpacking python3-scipy (1.13.1-5) ... 1325s Selecting previously unselected package python3-ufolib2. 1325s Preparing to unpack .../116-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 1325s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 1325s Selecting previously unselected package python3-mpmath. 1325s Preparing to unpack .../117-python3-mpmath_1.3.0-1_all.deb ... 1325s Unpacking python3-mpmath (1.3.0-1) ... 1325s Selecting previously unselected package python3-sympy. 1325s Preparing to unpack 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(15.1.0+ds-1build1) ... 1326s Selecting previously unselected package unicode-data. 1326s Preparing to unpack .../124-unicode-data_15.1.0-1_all.deb ... 1326s Unpacking unicode-data (15.1.0-1) ... 1326s Selecting previously unselected package python3-fonttools. 1326s Preparing to unpack .../125-python3-fonttools_4.46.0-1build2_amd64.deb ... 1326s Unpacking python3-fonttools (4.46.0-1build2) ... 1326s Selecting previously unselected package python3-iniconfig. 1326s Preparing to unpack .../126-python3-iniconfig_1.1.1-2_all.deb ... 1326s Unpacking python3-iniconfig (1.1.1-2) ... 1326s Selecting previously unselected package python3-kiwisolver. 1326s Preparing to unpack .../127-python3-kiwisolver_1.4.7-2_amd64.deb ... 1326s Unpacking python3-kiwisolver (1.4.7-2) ... 1326s Selecting previously unselected package libopenjp2-7:amd64. 1326s Preparing to unpack .../128-libopenjp2-7_2.5.0-2ubuntu1_amd64.deb ... 1326s Unpacking libopenjp2-7:amd64 (2.5.0-2ubuntu1) ... 1326s Selecting previously unselected package python3-pil:amd64. 1326s Preparing to unpack .../129-python3-pil_10.4.0-1ubuntu1_amd64.deb ... 1326s Unpacking python3-pil:amd64 (10.4.0-1ubuntu1) ... 1326s Selecting previously unselected package python3.12-tk. 1326s Preparing to unpack .../130-python3.12-tk_3.12.7-3_amd64.deb ... 1326s Unpacking python3.12-tk (3.12.7-3) ... 1326s Selecting previously unselected package python3.13-tk. 1326s Preparing to unpack .../131-python3.13-tk_3.13.0-2_amd64.deb ... 1326s Unpacking python3.13-tk (3.13.0-2) ... 1326s Selecting previously unselected package python3-tk:amd64. 1326s Preparing to unpack .../132-python3-tk_3.12.7-1_amd64.deb ... 1326s Unpacking python3-tk:amd64 (3.12.7-1) ... 1326s Selecting previously unselected package python3-pil.imagetk:amd64. 1326s Preparing to unpack .../133-python3-pil.imagetk_10.4.0-1ubuntu1_amd64.deb ... 1326s Unpacking python3-pil.imagetk:amd64 (10.4.0-1ubuntu1) ... 1326s Selecting previously unselected package python3-packaging. 1326s Preparing to unpack .../134-python3-packaging_24.1-1_all.deb ... 1326s Unpacking python3-packaging (24.1-1) ... 1326s Selecting previously unselected package python3-matplotlib. 1326s Preparing to unpack .../135-python3-matplotlib_3.8.3-3_amd64.deb ... 1326s Unpacking python3-matplotlib (3.8.3-3) ... 1326s Selecting previously unselected package python3-pandas-lib:amd64. 1326s Preparing to unpack .../136-python3-pandas-lib_2.2.3+dfsg-5_amd64.deb ... 1326s Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-5) ... 1327s Selecting previously unselected package python3-pandas. 1327s Preparing to unpack .../137-python3-pandas_2.2.3+dfsg-5_all.deb ... 1327s Unpacking python3-pandas (2.2.3+dfsg-5) ... 1327s Selecting previously unselected package python3-pluggy. 1327s Preparing to unpack .../138-python3-pluggy_1.5.0-1_all.deb ... 1327s Unpacking python3-pluggy (1.5.0-1) ... 1327s Selecting previously unselected package python3-pysam. 1327s Preparing to unpack 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liblapack3:amd64 (3.12.0-3build2) ... 1341s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 1341s Setting up gettext (0.22.5-2) ... 1341s Setting up python3-pysam (0.22.1+ds-2) ... 1341s Setting up python3.13 (3.13.0-2) ... 1342s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 1342s Setting up python3-pytest (8.3.3-1) ... 1343s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... 1343s Setting up python3-all (3.12.7-1) ... 1343s Setting up libpython3.12-dev:amd64 (3.12.7-3) ... 1343s Setting up intltool-debian (0.35.0+20060710.6) ... 1343s Setting up python3-fs (2.4.16-4) ... 1343s Setting up python3-xopen (1.7.0-2) ... 1343s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 1343s Setting up libraqm0:amd64 (0.10.1-1build1) ... 1343s Setting up libpython3.13-dev:amd64 (3.13.0-2) ... 1343s Setting up python3.12-dev (3.12.7-3) ... 1343s Setting up 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(14.2.0-8ubuntu1) ... 1359s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 1359s Setting up g++-14 (14.2.0-8ubuntu1) ... 1359s Setting up libtool (2.4.7-7build1) ... 1359s Setting up gcc (4:14.1.0-2ubuntu1) ... 1359s Setting up dh-autoreconf (20) ... 1359s Setting up g++ (4:14.1.0-2ubuntu1) ... 1359s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 1359s Setting up build-essential (12.10ubuntu1) ... 1359s Setting up debhelper (13.20ubuntu1) ... 1359s Setting up pybuild-plugin-autopkgtest (6.20241024) ... 1359s Setting up python3-fonttools (4.46.0-1build2) ... 1361s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 1361s Setting up python3-matplotlib (3.8.3-3) ... 1363s Setting up python3-seaborn (0.13.2-4) ... 1363s Setting up python3-sqt (0.8.0-8build1) ... 1364s Setting up autopkgtest-satdep (0) ... 1364s Processing triggers for libc-bin (2.40-1ubuntu3) ... 1364s Processing triggers for systemd (256.5-2ubuntu4) ... 1364s Processing triggers for man-db (2.12.1-3) ... 1365s Processing triggers for install-info (7.1.1-1) ... 1368s (Reading database ... 89202 files and directories currently installed.) 1368s Removing autopkgtest-satdep (0) ... 1369s autopkgtest [14:14:07]: test pybuild-autopkgtest: pybuild-autopkgtest 1369s autopkgtest [14:14:07]: test pybuild-autopkgtest: [----------------------- 1370s pybuild-autopkgtest 1370s I: pybuild base:311: cd /tmp/autopkgtest.sGYiD4/autopkgtest_tmp/build; python3.13 -m pytest tests 1370s ============================= test session starts ============================== 1370s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 1370s rootdir: /tmp/autopkgtest.sGYiD4/autopkgtest_tmp/build 1370s configfile: pytest.ini 1370s plugins: typeguard-4.4.1 1370s collected 32 items / 2 errors 1370s 1370s ==================================== ERRORS ==================================== 1370s _____________________ ERROR collecting tests/testalign.py ______________________ 1370s ImportError while importing test module '/tmp/autopkgtest.sGYiD4/autopkgtest_tmp/build/tests/testalign.py'. 1370s Hint: make sure your test modules/packages have valid Python names. 1370s Traceback: 1370s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 1370s return _bootstrap._gcd_import(name[level:], package, level) 1370s tests/testalign.py:1: in 1370s from sqt.align import (edit_distance as ed, GlobalAlignment as GA, consensus, 1370s /usr/lib/python3/dist-packages/sqt/align.py:8: in 1370s from sqt._helpers import globalalign, hamming_distance 1370s E ModuleNotFoundError: No module named 'sqt._helpers' 1370s ______________________ ERROR collecting tests/testdna.py _______________________ 1370s ImportError while importing test module '/tmp/autopkgtest.sGYiD4/autopkgtest_tmp/build/tests/testdna.py'. 1370s Hint: make sure your test modules/packages have valid Python names. 1370s Traceback: 1370s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 1370s return _bootstrap._gcd_import(name[level:], package, level) 1370s tests/testdna.py:1: in 1370s from sqt.dna import (reverse_complement, n_intervals, intervals_complement, 1370s /usr/lib/python3/dist-packages/sqt/dna.py:12: in 1370s from sqt._helpers import nt_to_aa 1370s E ModuleNotFoundError: No module named 'sqt._helpers' 1370s =========================== short test summary info ============================ 1370s ERROR tests/testalign.py 1370s ERROR tests/testdna.py 1370s !!!!!!!!!!!!!!!!!!! Interrupted: 2 errors during collection !!!!!!!!!!!!!!!!!!!! 1370s ============================== 2 errors in 0.21s =============================== 1370s E: pybuild pybuild:389: test: plugin distutils failed with: exit code=2: cd /tmp/autopkgtest.sGYiD4/autopkgtest_tmp/build; python3.13 -m pytest tests 1370s I: pybuild base:311: cd /tmp/autopkgtest.sGYiD4/autopkgtest_tmp/build; python3.12 -m pytest tests 1371s ============================= test session starts ============================== 1371s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 1371s rootdir: /tmp/autopkgtest.sGYiD4/autopkgtest_tmp/build 1371s configfile: pytest.ini 1371s plugins: typeguard-4.4.1 1371s collected 45 items 1371s 1375s tests/testalign.py ....... [ 15%] 1375s tests/testcigar.py ........... [ 40%] 1375s tests/testcolorspace.py .. [ 44%] 1375s tests/testdna.py ...... [ 57%] 1375s tests/testfasta.py ............. [ 86%] 1375s tests/testindexedfasta.py ... [ 93%] 1375s tests/testintervaltree.py . [ 95%] 1375s tests/testmedian.py . [ 97%] 1375s tests/testregion.py . [100%] 1375s 1375s ============================== 45 passed in 4.48s ============================== 1375s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13 1375s make: *** [/tmp/JWfWCAseEh/run:4: pybuild-autopkgtest] Error 25 1375s pybuild-autopkgtest: error: /tmp/JWfWCAseEh/run pybuild-autopkgtest returned exit code 2 1375s autopkgtest [14:14:13]: test pybuild-autopkgtest: -----------------------] 1376s autopkgtest [14:14:14]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 1376s pybuild-autopkgtest FAIL non-zero exit status 25 1376s autopkgtest [14:14:14]: @@@@@@@@@@@@@@@@@@@@ summary 1376s pybuild-autopkgtest FAIL non-zero exit status 25 1822s nova [W] Skipping flock for amd64 1822s Creating nova instance adt-plucky-amd64-python-sqt-20241113-135118-juju-7f2275-prod-proposed-migration-environment-20-cd92e0c0-c993-4f4a-9abf-7b48c6eb52af from image adt/ubuntu-plucky-amd64-server-20241113.img (UUID 62c21ac4-2290-4c8d-8313-dddd18eacff4)...