0s autopkgtest [17:30:15]: starting date and time: 2024-11-14 17:30:15+0000 0s autopkgtest [17:30:15]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [17:30:15]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._1mqj02k/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-pyvcf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@lcy02-3.secgroup --name adt-plucky-amd64-python-pyvcf-20241114-173015-juju-7f2275-prod-proposed-migration-environment-15-1d649a1a-58a3-4a56-8016-f3034f5c149a --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 43s autopkgtest [17:30:58]: testbed dpkg architecture: amd64 43s autopkgtest [17:30:58]: testbed apt version: 2.9.8 43s autopkgtest [17:30:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup 43s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 44s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [933 kB] 44s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [103 kB] 44s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 44s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.0 kB] 44s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [78.6 kB] 44s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [137 kB] 44s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 44s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [731 kB] 44s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [276 kB] 44s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [7840 B] 44s Fetched 2394 kB in 0s (7711 kB/s) 44s Reading package lists... 45s Reading package lists... 45s Building dependency tree... 45s Reading state information... 46s Calculating upgrade... 46s The following NEW packages will be installed: 46s python3.13-gdbm 46s The following packages will be upgraded: 46s libcap-ng0 libpython3-stdlib pastebinit python3 python3-gdbm python3-minimal 46s python3-systemd 46s 7 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 46s Need to get 178 kB of archives. 46s After this operation, 256 kB of additional disk space will be used. 46s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 46s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 46s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 46s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-3build1 [15.6 kB] 46s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 46s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 46s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 pastebinit all 1.7.1-1 [14.9 kB] 46s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build5 [45.7 kB] 46s Fetched 178 kB in 0s (7345 kB/s) 46s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 46s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 46s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 46s Setting up python3-minimal (3.12.7-1) ... 47s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 47s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 47s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 47s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 47s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 47s Preparing to unpack .../libcap-ng0_0.8.5-3build1_amd64.deb ... 47s Unpacking libcap-ng0:amd64 (0.8.5-3build1) over (0.8.5-1) ... 47s Setting up libcap-ng0:amd64 (0.8.5-3build1) ... 47s Selecting previously unselected package python3.13-gdbm. 47s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 47s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 47s Unpacking python3.13-gdbm (3.13.0-2) ... 47s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 47s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 47s Preparing to unpack .../pastebinit_1.7.1-1_all.deb ... 47s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 47s Preparing to unpack .../python3-systemd_235-1build5_amd64.deb ... 47s Unpacking python3-systemd (235-1build5) over (235-1build4) ... 47s Setting up python3.13-gdbm (3.13.0-2) ... 47s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 47s Setting up python3 (3.12.7-1) ... 47s Setting up python3-systemd (235-1build5) ... 47s Setting up python3-gdbm:amd64 (3.12.7-1) ... 47s Setting up pastebinit (1.7.1-1) ... 47s Processing triggers for libc-bin (2.40-1ubuntu3) ... 47s Processing triggers for man-db (2.12.1-3) ... 48s Reading package lists... 48s Building dependency tree... 48s Reading state information... 49s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 49s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 49s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 49s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 49s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 50s Reading package lists... 50s Reading package lists... 50s Building dependency tree... 50s Reading state information... 51s Calculating upgrade... 51s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 51s Reading package lists... 51s Building dependency tree... 51s Reading state information... 52s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 52s autopkgtest [17:31:07]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 52s autopkgtest [17:31:07]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pyvcf 53s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pyvcf 0.6.8+git20170215.476169c-10build1 (dsc) [2402 B] 53s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pyvcf 0.6.8+git20170215.476169c-10build1 (tar) [936 kB] 53s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pyvcf 0.6.8+git20170215.476169c-10build1 (diff) [10.0 kB] 53s gpgv: Signature made Wed Apr 10 17:40:14 2024 UTC 53s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 53s gpgv: Can't check signature: No public key 53s dpkg-source: warning: cannot verify inline signature for ./python-pyvcf_0.6.8+git20170215.476169c-10build1.dsc: no acceptable signature found 53s autopkgtest [17:31:08]: testing package python-pyvcf version 0.6.8+git20170215.476169c-10build1 54s autopkgtest [17:31:09]: build not needed 54s autopkgtest [17:31:09]: test pybuild-autopkgtest: preparing testbed 55s Reading package lists... 55s Building dependency tree... 55s Reading state information... 55s Starting pkgProblemResolver with broken count: 0 55s Starting 2 pkgProblemResolver with broken count: 0 55s Done 56s The following additional packages will be installed: 56s autoconf automake autopoint autotools-dev build-essential cpp cpp-14 56s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper debugedit 56s dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14 56s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 56s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian 56s libarchive-zip-perl libasan8 libcc1-0 libdebhelper-perl libdeflate0 56s libexpat1-dev libfile-stripnondeterminism-perl libgcc-14-dev libgomp1 56s libhts3t64 libhtscodecs2 libhwasan0 libisl23 libitm1 libjs-jquery 56s libjs-sphinxdoc libjs-underscore liblsan0 libmpc3 libpython3-all-dev 56s libpython3-dev libpython3.12-dev libpython3.13 libpython3.13-dev 56s libpython3.13-minimal libpython3.13-stdlib libquadmath0 libstdc++-14-dev 56s libtool libtsan2 libubsan1 m4 po-debconf pybuild-plugin-autopkgtest 56s python-pyvcf-examples python3-all python3-all-dev python3-dev 56s python3-iniconfig python3-packaging python3-pluggy python3-pysam 56s python3-pytest python3-vcf python3.12-dev python3.13 python3.13-dev 56s python3.13-minimal pyvcf zlib1g-dev 56s Suggested packages: 56s autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales 56s cpp-14-doc cython-doc dh-make flit python3-build python3-installer 56s python3-wheel g++-multilib g++-14-multilib gcc-14-doc gcc-multilib 56s manpages-dev flex bison gdb gcc-doc gcc-14-multilib gdb-x86-64-linux-gnu 56s gettext-doc libasprintf-dev libgettextpo-dev libstdc++-14-doc libtool-doc 56s gfortran | fortran95-compiler gcj-jdk m4-doc libmail-box-perl 56s python3.13-venv python3.13-doc binfmt-support 56s Recommended packages: 56s libarchive-cpio-perl javascript-common libltdl-dev libmail-sendmail-perl 56s The following NEW packages will be installed: 56s autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential 56s cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper 56s debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14 56s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 56s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian 56s libarchive-zip-perl libasan8 libcc1-0 libdebhelper-perl libdeflate0 56s libexpat1-dev libfile-stripnondeterminism-perl libgcc-14-dev libgomp1 56s libhts3t64 libhtscodecs2 libhwasan0 libisl23 libitm1 libjs-jquery 56s libjs-sphinxdoc libjs-underscore liblsan0 libmpc3 libpython3-all-dev 56s libpython3-dev libpython3.12-dev libpython3.13 libpython3.13-dev 56s libpython3.13-minimal libpython3.13-stdlib libquadmath0 libstdc++-14-dev 56s libtool libtsan2 libubsan1 m4 po-debconf pybuild-plugin-autopkgtest 56s python-pyvcf-examples python3-all python3-all-dev python3-dev 56s python3-iniconfig python3-packaging python3-pluggy python3-pysam 56s python3-pytest python3-vcf python3.12-dev python3.13 python3.13-dev 56s python3.13-minimal pyvcf zlib1g-dev 56s 0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded. 56s Need to get 100 MB/100 MB of archives. 56s After this operation, 377 MB of additional disk space will be used. 56s Get:1 /tmp/autopkgtest.xfmd5z/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [812 B] 56s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 56s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 56s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-4build1 [244 kB] 56s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB] 56s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB] 56s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 56s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.22.5-2 [616 kB] 56s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 56s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 56s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 56s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 56s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 56s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 56s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 56s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 56s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 56s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 56s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 56s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 56s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 56s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 56s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 56s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 56s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 56s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 56s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 56s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 56s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 56s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 56s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 56s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 56s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 56s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 56s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 cython3 amd64 3.0.11+dfsg-1ubuntu1 [2491 kB] 56s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 56s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.4.7-7build1 [166 kB] 56s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB] 56s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 56s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 56s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 56s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-1 [46.9 kB] 56s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB] 56s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.22.5-2 [948 kB] 56s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 56s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 56s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.20ubuntu1 [893 kB] 56s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20241024 [112 kB] 56s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 56s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1-dev amd64 2.6.2-2 [140 kB] 56s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhtscodecs2 amd64 1.6.1-1 [132 kB] 56s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhts3t64 amd64 1.20+ds-1 [439 kB] 56s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 56s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 56s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 56s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 56s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.12-dev amd64 3.12.7-3 [5699 kB] 56s Get:58 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-dev amd64 3.12.7-1 [10.3 kB] 56s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 56s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.0-2 [2321 kB] 56s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-dev amd64 3.13.0-2 [5488 kB] 56s Get:62 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-all-dev amd64 3.12.7-1 [916 B] 56s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-autopkgtest all 6.20241024 [1746 B] 56s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-pyvcf-examples all 0.6.8+git20170215.476169c-10build1 [935 kB] 56s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 56s Get:66 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 56s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB] 56s Get:68 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-dev amd64 3.12.7-1 [26.7 kB] 56s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-dev amd64 3.13.0-2 [507 kB] 56s Get:70 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all-dev amd64 3.12.7-1 [914 B] 56s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 56s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 56s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 56s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pysam amd64 0.22.1+ds-2 [3504 kB] 56s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 56s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-vcf amd64 0.6.8+git20170215.476169c-10build1 [50.1 kB] 56s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 pyvcf all 0.6.8+git20170215.476169c-10build1 [7752 B] 57s Fetched 100 MB in 1s (121 MB/s) 57s Selecting previously unselected package libpython3.13-minimal:amd64. 57s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75554 files and directories currently installed.) 57s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_amd64.deb ... 57s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 57s Selecting previously unselected package python3.13-minimal. 57s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_amd64.deb ... 57s Unpacking python3.13-minimal (3.13.0-2) ... 57s Selecting previously unselected package m4. 57s Preparing to unpack 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Unpacking python3-pytest (8.3.3-1) ... 61s Selecting previously unselected package python3-vcf. 61s Preparing to unpack .../74-python3-vcf_0.6.8+git20170215.476169c-10build1_amd64.deb ... 61s Unpacking python3-vcf (0.6.8+git20170215.476169c-10build1) ... 61s Selecting previously unselected package pyvcf. 61s Preparing to unpack .../75-pyvcf_0.6.8+git20170215.476169c-10build1_all.deb ... 61s Unpacking pyvcf (0.6.8+git20170215.476169c-10build1) ... 61s Selecting previously unselected package autopkgtest-satdep. 61s Preparing to unpack .../76-1-autopkgtest-satdep.deb ... 61s Unpacking autopkgtest-satdep (0) ... 61s Setting up libhtscodecs2:amd64 (1.6.1-1) ... 61s Setting up dh-python (6.20241024) ... 61s Setting up python3-iniconfig (1.1.1-2) ... 61s Setting up python-pyvcf-examples (0.6.8+git20170215.476169c-10build1) ... 61s Setting up libarchive-zip-perl (1.68-1) ... 61s Setting up libdebhelper-perl (13.20ubuntu1) ... 61s Setting up libdeflate0:amd64 (1.22-1) ... 61s Setting up m4 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... 64s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 64s Setting up libisl23:amd64 (0.27-1) ... 64s Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... 64s Setting up libcc1-0:amd64 (14.2.0-8ubuntu1) ... 64s Setting up liblsan0:amd64 (14.2.0-8ubuntu1) ... 64s Setting up libitm1:amd64 (14.2.0-8ubuntu1) ... 64s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 64s Setting up libpython3.13:amd64 (3.13.0-2) ... 64s Setting up automake (1:1.16.5-1.3ubuntu1) ... 64s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 64s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... 64s Setting up gettext (0.22.5-2) ... 64s Setting up python3-pysam (0.22.1+ds-2) ... 64s Setting up python3.13 (3.13.0-2) ... 65s Setting up python3-pytest (8.3.3-1) ... 66s Setting up python3-all (3.12.7-1) ... 66s Setting up libpython3.12-dev:amd64 (3.12.7-3) ... 66s Setting up python3-vcf (0.6.8+git20170215.476169c-10build1) ... 66s /usr/lib/python3/dist-packages/vcf/parser.py:278: SyntaxWarning: invalid escape sequence '\[' 66s self._alt_pattern = re.compile('[\[\]]') 66s /usr/lib/python3/dist-packages/vcf/parser.py:536: SyntaxWarning: invalid escape sequence '\[' 66s remoteOrientation = (re.search('\[', str) is not None) 66s /usr/lib/python3/dist-packages/vcf/parser.py:278: SyntaxWarning: invalid escape sequence '\[' 66s self._alt_pattern = re.compile('[\[\]]') 66s /usr/lib/python3/dist-packages/vcf/parser.py:536: SyntaxWarning: invalid escape sequence '\[' 66s remoteOrientation = (re.search('\[', str) is not None) 66s Setting up intltool-debian (0.35.0+20060710.6) ... 66s Setting up libpython3.13-dev:amd64 (3.13.0-2) ... 66s Setting up python3.12-dev (3.12.7-3) ... 66s Setting up cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 66s Setting up libjs-sphinxdoc (7.4.7-4) ... 66s Setting up cpp-14 (14.2.0-8ubuntu1) ... 66s Setting up dh-strip-nondeterminism (1.14.0-1) ... 66s Setting up libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 66s Setting up libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 66s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 66s Setting up libpython3-dev:amd64 (3.12.7-1) ... 66s Setting up pyvcf (0.6.8+git20170215.476169c-10build1) ... 66s Setting up python3.13-dev (3.13.0-2) ... 66s Setting up po-debconf (1.0.21+nmu1) ... 66s Setting up libpython3-all-dev:amd64 (3.12.7-1) ... 66s Setting up python3-dev (3.12.7-1) ... 66s Setting up cpp (4:14.1.0-2ubuntu1) ... 66s Setting up gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 66s Setting up python3-all-dev (3.12.7-1) ... 66s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 66s Setting up gcc-14 (14.2.0-8ubuntu1) ... 66s Setting up g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 66s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 66s Setting up g++-14 (14.2.0-8ubuntu1) ... 66s Setting up libtool (2.4.7-7build1) ... 66s Setting up gcc (4:14.1.0-2ubuntu1) ... 66s Setting up dh-autoreconf (20) ... 66s Setting up g++ (4:14.1.0-2ubuntu1) ... 66s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 66s Setting up build-essential (12.10ubuntu1) ... 66s Setting up debhelper (13.20ubuntu1) ... 66s Setting up pybuild-plugin-autopkgtest (6.20241024) ... 66s Setting up autopkgtest-satdep (0) ... 66s Processing triggers for systemd (256.5-2ubuntu4) ... 66s Processing triggers for man-db (2.12.1-3) ... 67s Processing triggers for install-info (7.1.1-1) ... 67s Processing triggers for libc-bin (2.40-1ubuntu3) ... 70s (Reading database ... 80368 files and directories currently installed.) 70s Removing autopkgtest-satdep (0) ... 70s autopkgtest [17:31:25]: test pybuild-autopkgtest: pybuild-autopkgtest 70s autopkgtest [17:31:25]: test pybuild-autopkgtest: [----------------------- 70s pybuild-autopkgtest 70s I: pybuild pybuild:308: mkdir /tmp/autopkgtest.xfmd5z/autopkgtest_tmp/build/vcf; cp -r /tmp/autopkgtest.xfmd5z/build.xQY/src/vcf/test /tmp/autopkgtest.xfmd5z/autopkgtest_tmp/build/vcf/ 70s I: pybuild base:311: cd /tmp/autopkgtest.xfmd5z/autopkgtest_tmp/build; python3.13 -m pytest 71s ============================= test session starts ============================== 71s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 71s rootdir: /tmp/autopkgtest.xfmd5z/autopkgtest_tmp/build 71s plugins: typeguard-4.4.1 71s collected 104 items 71s 73s vcf/test/test_vcf.py ................................................... [ 49%] 73s .....................sssssss............ss.ss........ [100%] 73s 73s ======================== 93 passed, 11 skipped in 1.90s ======================== 73s I: pybuild pybuild:308: mkdir /tmp/autopkgtest.xfmd5z/autopkgtest_tmp/build/vcf; cp -r /tmp/autopkgtest.xfmd5z/build.xQY/src/vcf/test /tmp/autopkgtest.xfmd5z/autopkgtest_tmp/build/vcf/ 73s mkdir: cannot create directory ‘/tmp/autopkgtest.xfmd5z/autopkgtest_tmp/build/vcf’: File exists 73s I: pybuild base:311: cd /tmp/autopkgtest.xfmd5z/autopkgtest_tmp/build; python3.12 -m pytest 73s ============================= test session starts ============================== 73s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 73s rootdir: /tmp/autopkgtest.xfmd5z/autopkgtest_tmp/build 73s plugins: typeguard-4.4.1 73s collected 104 items 73s 75s vcf/test/test_vcf.py ................................................... [ 49%] 75s ........................................ss.ss........ [100%] 75s 75s ======================== 100 passed, 4 skipped in 2.07s ======================== 75s autopkgtest [17:31:30]: test pybuild-autopkgtest: -----------------------] 76s pybuild-autopkgtest PASS 76s autopkgtest [17:31:31]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 76s autopkgtest [17:31:31]: @@@@@@@@@@@@@@@@@@@@ summary 76s pybuild-autopkgtest PASS 91s nova [W] Skipping flock for amd64 91s Creating nova instance adt-plucky-amd64-python-pyvcf-20241114-173015-juju-7f2275-prod-proposed-migration-environment-15-1d649a1a-58a3-4a56-8016-f3034f5c149a from image adt/ubuntu-plucky-amd64-server-20241114.img (UUID 86f72d39-d3f4-462e-8625-4ce3a06b44aa)...