0s autopkgtest [14:05:36]: starting date and time: 2024-11-14 14:05:36+0000 0s autopkgtest [14:05:36]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [14:05:36]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.6ua88z1m/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-pyomop --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-27.secgroup --name adt-plucky-amd64-python-pyomop-20241114-140536-juju-7f2275-prod-proposed-migration-environment-20-dac89698-dcea-4033-906c-9e8fb65620b1 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 51s autopkgtest [14:06:27]: testbed dpkg architecture: amd64 51s autopkgtest [14:06:27]: testbed apt version: 2.9.8 51s autopkgtest [14:06:27]: @@@@@@@@@@@@@@@@@@@@ test bed setup 52s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 52s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [983 kB] 52s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 52s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [105 kB] 52s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 52s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [79.9 kB] 52s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [138 kB] 52s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 52s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [749 kB] 52s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [291 kB] 52s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9252 B] 52s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [1084 B] 53s Fetched 2484 kB in 1s (3095 kB/s) 53s Reading package lists... 55s Reading package lists... 55s Building dependency tree... 55s Reading state information... 55s Calculating upgrade... 55s The following NEW packages will be installed: 55s python3.13-gdbm 55s The following packages will be upgraded: 55s libpython3-stdlib pastebinit python3 python3-gdbm python3-minimal 55s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 55s Need to get 116 kB of archives. 55s After this operation, 100 kB of additional disk space will be used. 55s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 56s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 56s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 56s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 56s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 56s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 pastebinit all 1.7.1-1 [14.9 kB] 56s Fetched 116 kB in 0s (328 kB/s) 56s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 56s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 56s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 56s Setting up python3-minimal (3.12.7-1) ... 56s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 56s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 56s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 56s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 56s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 56s Selecting previously unselected package python3.13-gdbm. 56s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 56s Unpacking python3.13-gdbm (3.13.0-2) ... 56s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 56s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 56s Preparing to unpack .../pastebinit_1.7.1-1_all.deb ... 56s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 56s Setting up python3.13-gdbm (3.13.0-2) ... 56s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 56s Setting up python3 (3.12.7-1) ... 58s Setting up python3-gdbm:amd64 (3.12.7-1) ... 58s Setting up pastebinit (1.7.1-1) ... 58s Processing triggers for man-db (2.12.1-3) ... 58s Reading package lists... 58s Building dependency tree... 58s Reading state information... 58s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 58s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 58s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 58s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 58s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 59s Reading package lists... 59s Reading package lists... 59s Building dependency tree... 59s Reading state information... 59s Calculating upgrade... 59s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 59s Reading package lists... 60s Building dependency tree... 60s Reading state information... 60s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 62s autopkgtest [14:06:38]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 63s autopkgtest [14:06:39]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pyomop 65s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pyomop 4.3.0-1 (dsc) [2147 B] 65s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pyomop 4.3.0-1 (tar) [44.5 kB] 65s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pyomop 4.3.0-1 (diff) [5336 B] 65s gpgv: Signature made Thu Jul 18 11:29:00 2024 UTC 65s gpgv: using RSA key A954A54575BCED49240A725CFFD3C88B997DD16A 65s gpgv: Can't check signature: No public key 65s dpkg-source: warning: cannot verify inline signature for ./python-pyomop_4.3.0-1.dsc: no acceptable signature found 65s autopkgtest [14:06:41]: testing package python-pyomop version 4.3.0-1 65s autopkgtest [14:06:41]: build not needed 66s autopkgtest [14:06:42]: test upstream: preparing testbed 69s Reading package lists... 69s Building dependency tree... 69s Reading state information... 69s Starting pkgProblemResolver with broken count: 0 69s Starting 2 pkgProblemResolver with broken count: 0 69s Done 70s The following additional packages will be installed: 70s autoconf automake autopoint autotools-dev build-essential cpp cpp-14 70s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu debhelper debugedit 70s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common docutils-doc 70s dwz fonts-mathjax fonts-open-sans g++ g++-14 g++-14-x86-64-linux-gnu 70s g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu 70s gettext help2man intltool-debian javascript-common libarchive-zip-perl 70s libasan8 libblas3 libcc1-0 libdebhelper-perl 70s libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libgomp1 70s libhwasan0 libisl23 libitm1 libjs-bootstrap4 libjs-jquery libjs-mathjax 70s libjs-popper.js libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 70s liblbfgsb0 liblsan0 libmpc3 libpython3.13-minimal libpython3.13-stdlib 70s libquadmath0 libstdc++-14-dev libtool libtsan2 libubsan1 m4 po-debconf 70s pybuild-plugin-pyproject pyomop python-pandas-doc python-pyomop-doc 70s python-requests-doc python-scipy-doc python-sklearn-doc python3-aiosqlite 70s python3-alabaster python3-all python3-build python3-click python3-colorama 70s python3-commonmark python3-dateutil python3-decorator python3-defusedxml 70s python3-doc python3-docutils python3-greenlet python3-imagesize 70s python3-iniconfig python3-installer python3-numpy python3-packaging 70s python3-pandas python3-pandas-lib python3-pluggy python3-pyomop 70s python3-pyproject-hooks python3-pytest python3-recommonmark python3-roman 70s python3-scipy python3-setuptools-scm python3-six python3-snowballstemmer 70s python3-sphinx python3-sqlalchemy python3-toml python3-tz python3-wheel 70s python3.12-doc python3.13 python3.13-minimal sgml-base sphinx-common 70s sphinx-doc xml-core 70s Suggested packages: 70s autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales 70s cpp-14-doc dh-make flit g++-multilib g++-14-multilib gcc-14-doc gcc-multilib 70s manpages-dev flex bison gdb gcc-doc gcc-14-multilib gdb-x86-64-linux-gnu 70s gettext-doc libasprintf-dev libgettextpo-dev apache2 | lighttpd | httpd 70s fonts-mathjax-extras fonts-stix libjs-mathjax-doc libstdc++-14-doc 70s libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc libmail-box-perl 70s python-numpy-doc python-aiosqlite-doc python3-pip python3-venv 70s python-build-doc python3-examples fonts-linuxlibertine | ttf-linux-libertine 70s texlive-lang-french texlive-latex-base texlive-latex-recommended 70s python-greenlet-dev python-greenlet-doc python-installer-doc gfortran 70s python3-dev python3-statsmodels python3-stemmer dvipng dvisvgm 70s fonts-freefont-otf imagemagick-6.q16 latexmk python3-sphinx-rtd-theme 70s tex-gyre texlive-fonts-extra texlive-fonts-recommended texlive-latex-extra 70s texlive-plain-generic python-sqlalchemy-doc python3-asyncpg python3-pg8000 70s python3-psycopg2 python3-psycopg2cffi python3-mariadb-connector 70s python3-mysqldb python3-mysql.connector python3-pyodbc python3-pymssql 70s python3-cx-oracle python3-oracledb python3.13-venv python3.13-doc 70s binfmt-support sgml-base-doc 70s Recommended packages: 70s libarchive-cpio-perl node-jquery libjson-xs-perl libltdl-dev 70s libmail-sendmail-perl libpaper-utils python3-pil python3-matplotlib 70s python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-bs4 70s python3-html5lib python3-lxml python3-tables python3-numba 70s python3-sqlalchemy-ext 70s The following NEW packages will be installed: 70s autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential 70s cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu debhelper debugedit 70s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common docutils-doc 70s dwz fonts-mathjax fonts-open-sans g++ g++-14 g++-14-x86-64-linux-gnu 70s g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu 70s gettext help2man intltool-debian javascript-common libarchive-zip-perl 70s libasan8 libblas3 libcc1-0 libdebhelper-perl 70s libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libgomp1 70s libhwasan0 libisl23 libitm1 libjs-bootstrap4 libjs-jquery libjs-mathjax 70s libjs-popper.js libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 70s liblbfgsb0 liblsan0 libmpc3 libpython3.13-minimal libpython3.13-stdlib 70s libquadmath0 libstdc++-14-dev libtool libtsan2 libubsan1 m4 po-debconf 70s pybuild-plugin-pyproject pyomop python-pandas-doc python-pyomop-doc 70s python-requests-doc python-scipy-doc python-sklearn-doc python3-aiosqlite 70s python3-alabaster python3-all python3-build python3-click python3-colorama 70s python3-commonmark python3-dateutil python3-decorator python3-defusedxml 70s python3-doc python3-docutils python3-greenlet python3-imagesize 70s python3-iniconfig python3-installer python3-numpy python3-packaging 70s python3-pandas python3-pandas-lib python3-pluggy python3-pyomop 70s python3-pyproject-hooks python3-pytest python3-recommonmark python3-roman 70s python3-scipy python3-setuptools-scm python3-six python3-snowballstemmer 70s python3-sphinx python3-sqlalchemy python3-toml python3-tz python3-wheel 70s python3.12-doc python3.13 python3.13-minimal sgml-base sphinx-common 70s sphinx-doc xml-core 70s 0 upgraded, 113 newly installed, 0 to remove and 0 not upgraded. 70s Need to get 204 MB/204 MB of archives. 70s After this operation, 914 MB of additional disk space will be used. 70s Get:1 /tmp/autopkgtest.UXSocN/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [884 B] 70s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 70s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 70s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB] 70s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-4build1 [244 kB] 70s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB] 70s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB] 70s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 70s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.22.5-2 [616 kB] 70s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 70s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 70s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 71s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 71s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 71s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 71s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 71s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 71s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 71s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 71s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 71s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 71s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 71s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 71s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 71s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 71s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 72s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 72s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 72s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 72s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 72s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 73s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 73s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 73s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 73s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 73s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 73s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.4.7-7build1 [166 kB] 73s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB] 73s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 73s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 73s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 73s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-1 [46.9 kB] 73s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB] 73s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.22.5-2 [948 kB] 73s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 73s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 73s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.20ubuntu1 [893 kB] 73s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20241024 [112 kB] 73s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB] 73s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 docutils-common all 0.21.2+dfsg-2 [131 kB] 73s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 docutils-doc all 0.21.2+dfsg-2 [1139 kB] 73s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 73s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-open-sans all 1.11-2 [635 kB] 73s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 help2man amd64 1.49.3 [201 kB] 73s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 11+nmu1 [5936 B] 73s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 73s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 73s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 73s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 73s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 73s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 73s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 73s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-perl all 4.10000-1 [81.9 kB] 73s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 73s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 73s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 73s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 73s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 73s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-toml all 0.10.2-1 [16.5 kB] 73s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-wheel all 0.44.0-1 [54.2 kB] 73s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-build all 1.2.2-1 [31.0 kB] 73s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 73s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-pyproject all 6.20241024 [1728 B] 73s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-aiosqlite all 0.20.0-1 [14.1 kB] 73s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-colorama all 0.4.6-4 [32.1 kB] 73s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-click all 8.1.7-2 [79.5 kB] 73s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 73s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 73s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 74s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB] 74s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-5 [5087 kB] 74s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-5 [3112 kB] 74s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-greenlet amd64 3.0.3-0ubuntu6 [155 kB] 74s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-sqlalchemy all 2.0.32+ds1-1ubuntu1 [1206 kB] 74s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyomop all 4.3.0-1 [15.9 kB] 74s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 pyomop all 4.3.0-1 [2854 B] 74s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 74s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-pandas-doc all 2.2.3+dfsg-5 [9117 kB] 75s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-pyomop-doc all 4.3.0-1 [70.3 kB] 75s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 python-requests-doc all 2.32.3+dfsg-1ubuntu1 [174 kB] 75s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-sklearn-doc all 1.4.2+dfsg-6 [52.2 MB] 78s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 78s Get:93 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 78s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-commonmark all 0.9.1-6 [46.0 kB] 78s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 78s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-defusedxml all 0.7.1-2 [42.0 kB] 78s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-doc all 3.12.7-3 [12.4 MB] 79s Get:98 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-doc all 3.12.7-1 [10.3 kB] 79s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-roman all 4.2-1 [10.0 kB] 79s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 79s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-imagesize all 1.4.1-1 [6844 B] 79s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 79s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 79s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 79s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-common all 7.4.7-4 [775 kB] 79s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 79s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 79s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-sphinx all 7.4.7-4 [593 kB] 79s Get:109 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-recommonmark all 0.7.1+ds-5 [16.9 kB] 79s Get:110 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-setuptools-scm all 8.1.0-1 [32.2 kB] 79s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-doc all 7.4.7-4 [3476 kB] 79s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-scipy-doc all 1.13.1-5 [31.1 kB] 79s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB] 82s Fetched 204 MB in 12s (17.5 MB/s) 82s Selecting previously unselected package libpython3.13-minimal:amd64. 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75549 files and directories currently installed.) 82s Preparing to unpack .../000-libpython3.13-minimal_3.13.0-2_amd64.deb ... 82s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 82s Selecting previously unselected package python3.13-minimal. 82s Preparing to unpack .../001-python3.13-minimal_3.13.0-2_amd64.deb ... 82s Unpacking python3.13-minimal (3.13.0-2) ... 82s Selecting previously unselected package sgml-base. 82s Preparing to unpack .../002-sgml-base_1.31_all.deb ... 82s Unpacking sgml-base (1.31) ... 82s Selecting previously unselected package m4. 82s Preparing to unpack .../003-m4_1.4.19-4build1_amd64.deb ... 82s Unpacking m4 (1.4.19-4build1) ... 82s Selecting previously unselected package autoconf. 82s Preparing to unpack .../004-autoconf_2.72-3_all.deb ... 82s Unpacking autoconf (2.72-3) ... 82s Selecting previously unselected package autotools-dev. 82s Preparing to unpack .../005-autotools-dev_20220109.1_all.deb ... 82s Unpacking autotools-dev (20220109.1) ... 82s Selecting previously unselected package automake. 82s Preparing to unpack .../006-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 82s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 82s Selecting previously unselected package autopoint. 82s Preparing to unpack .../007-autopoint_0.22.5-2_all.deb ... 82s Unpacking autopoint (0.22.5-2) ... 82s Selecting previously unselected package libisl23:amd64. 82s Preparing to unpack .../008-libisl23_0.27-1_amd64.deb ... 82s Unpacking libisl23:amd64 (0.27-1) ... 82s Selecting previously unselected package libmpc3:amd64. 82s Preparing to unpack .../009-libmpc3_1.3.1-1build2_amd64.deb ... 82s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 82s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 82s Preparing to unpack .../010-cpp-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 82s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 82s Selecting previously unselected package cpp-14. 82s Preparing to unpack .../011-cpp-14_14.2.0-8ubuntu1_amd64.deb ... 82s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 82s Selecting previously unselected package cpp-x86-64-linux-gnu. 82s Preparing to unpack .../012-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 82s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 82s Selecting previously unselected package cpp. 82s Preparing to unpack .../013-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 82s Unpacking cpp (4:14.1.0-2ubuntu1) ... 82s Selecting previously unselected package libcc1-0:amd64. 82s Preparing to unpack .../014-libcc1-0_14.2.0-8ubuntu1_amd64.deb ... 82s Unpacking libcc1-0:amd64 (14.2.0-8ubuntu1) ... 82s Selecting previously unselected package libgomp1:amd64. 82s Preparing to unpack .../015-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 82s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 82s Selecting previously unselected package libitm1:amd64. 82s Preparing to unpack .../016-libitm1_14.2.0-8ubuntu1_amd64.deb ... 82s Unpacking libitm1:amd64 (14.2.0-8ubuntu1) ... 82s Selecting previously unselected package libasan8:amd64. 82s Preparing to unpack .../017-libasan8_14.2.0-8ubuntu1_amd64.deb ... 82s Unpacking libasan8:amd64 (14.2.0-8ubuntu1) ... 82s Selecting previously unselected package liblsan0:amd64. 82s Preparing to unpack .../018-liblsan0_14.2.0-8ubuntu1_amd64.deb ... 82s Unpacking liblsan0:amd64 (14.2.0-8ubuntu1) ... 82s Selecting previously unselected package libtsan2:amd64. 82s Preparing to unpack .../019-libtsan2_14.2.0-8ubuntu1_amd64.deb ... 82s Unpacking libtsan2:amd64 (14.2.0-8ubuntu1) ... 82s Selecting previously unselected package libubsan1:amd64. 82s Preparing to unpack .../020-libubsan1_14.2.0-8ubuntu1_amd64.deb ... 82s Unpacking libubsan1:amd64 (14.2.0-8ubuntu1) ... 83s Selecting previously unselected package libhwasan0:amd64. 83s Preparing to unpack .../021-libhwasan0_14.2.0-8ubuntu1_amd64.deb ... 83s Unpacking libhwasan0:amd64 (14.2.0-8ubuntu1) ... 83s Selecting previously unselected package libquadmath0:amd64. 83s Preparing to unpack .../022-libquadmath0_14.2.0-8ubuntu1_amd64.deb ... 83s Unpacking libquadmath0:amd64 (14.2.0-8ubuntu1) ... 83s Selecting previously unselected package libgcc-14-dev:amd64. 83s Preparing to unpack .../023-libgcc-14-dev_14.2.0-8ubuntu1_amd64.deb ... 83s Unpacking libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 83s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 83s Preparing to unpack .../024-gcc-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 83s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 83s Selecting previously unselected package gcc-14. 83s Preparing to unpack .../025-gcc-14_14.2.0-8ubuntu1_amd64.deb ... 83s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 83s Selecting previously unselected package gcc-x86-64-linux-gnu. 83s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 83s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 83s Selecting previously unselected package gcc. 83s Preparing to unpack .../027-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 83s Unpacking gcc (4:14.1.0-2ubuntu1) ... 83s Selecting previously unselected package libstdc++-14-dev:amd64. 83s Preparing to unpack .../028-libstdc++-14-dev_14.2.0-8ubuntu1_amd64.deb ... 83s Unpacking libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 83s Selecting previously unselected package g++-14-x86-64-linux-gnu. 83s Preparing to unpack .../029-g++-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 83s Unpacking g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 83s Selecting previously unselected package g++-14. 83s Preparing to unpack .../030-g++-14_14.2.0-8ubuntu1_amd64.deb ... 83s Unpacking g++-14 (14.2.0-8ubuntu1) ... 83s Selecting previously unselected package g++-x86-64-linux-gnu. 83s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 83s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 83s Selecting previously unselected package g++. 83s Preparing to unpack .../032-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 83s Unpacking g++ (4:14.1.0-2ubuntu1) ... 83s Selecting previously unselected package build-essential. 83s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 83s Unpacking build-essential (12.10ubuntu1) ... 83s Selecting previously unselected package libdebhelper-perl. 83s Preparing to unpack .../034-libdebhelper-perl_13.20ubuntu1_all.deb ... 83s Unpacking libdebhelper-perl (13.20ubuntu1) ... 83s Selecting previously unselected package libtool. 83s Preparing to unpack .../035-libtool_2.4.7-7build1_all.deb ... 83s Unpacking libtool (2.4.7-7build1) ... 84s Selecting previously unselected package dh-autoreconf. 84s Preparing to unpack .../036-dh-autoreconf_20_all.deb ... 84s Unpacking dh-autoreconf (20) ... 84s Selecting previously unselected package libarchive-zip-perl. 84s Preparing to unpack .../037-libarchive-zip-perl_1.68-1_all.deb ... 84s Unpacking libarchive-zip-perl (1.68-1) ... 84s Selecting previously unselected package libfile-stripnondeterminism-perl. 84s Preparing to unpack .../038-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... 84s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... 84s Selecting previously unselected package dh-strip-nondeterminism. 84s Preparing to unpack .../039-dh-strip-nondeterminism_1.14.0-1_all.deb ... 84s Unpacking dh-strip-nondeterminism (1.14.0-1) ... 84s Selecting previously unselected package debugedit. 84s Preparing to unpack .../040-debugedit_1%3a5.1-1_amd64.deb ... 84s Unpacking debugedit (1:5.1-1) ... 84s Selecting previously unselected package dwz. 84s Preparing to unpack .../041-dwz_0.15-1build6_amd64.deb ... 84s Unpacking dwz (0.15-1build6) ... 84s Selecting previously unselected package gettext. 84s Preparing to unpack .../042-gettext_0.22.5-2_amd64.deb ... 84s Unpacking gettext (0.22.5-2) ... 84s Selecting previously unselected package intltool-debian. 84s Preparing to unpack .../043-intltool-debian_0.35.0+20060710.6_all.deb ... 84s Unpacking intltool-debian (0.35.0+20060710.6) ... 84s Selecting previously unselected package po-debconf. 84s Preparing to unpack .../044-po-debconf_1.0.21+nmu1_all.deb ... 84s Unpacking po-debconf (1.0.21+nmu1) ... 84s Selecting previously unselected package debhelper. 84s Preparing to unpack .../045-debhelper_13.20ubuntu1_all.deb ... 84s Unpacking debhelper (13.20ubuntu1) ... 84s Selecting previously unselected package dh-python. 84s Preparing to unpack .../046-dh-python_6.20241024_all.deb ... 84s Unpacking dh-python (6.20241024) ... 84s Selecting previously unselected package xml-core. 84s Preparing to unpack .../047-xml-core_0.19_all.deb ... 84s Unpacking xml-core (0.19) ... 84s Selecting previously unselected package docutils-common. 84s Preparing to unpack .../048-docutils-common_0.21.2+dfsg-2_all.deb ... 84s Unpacking docutils-common (0.21.2+dfsg-2) ... 84s Selecting previously unselected package docutils-doc. 84s Preparing to unpack .../049-docutils-doc_0.21.2+dfsg-2_all.deb ... 84s Unpacking docutils-doc (0.21.2+dfsg-2) ... 84s Selecting previously unselected package fonts-mathjax. 84s Preparing to unpack .../050-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 84s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 84s Selecting previously unselected package fonts-open-sans. 84s Preparing to unpack .../051-fonts-open-sans_1.11-2_all.deb ... 84s Unpacking fonts-open-sans (1.11-2) ... 84s Selecting previously unselected package help2man. 84s Preparing to unpack .../052-help2man_1.49.3_amd64.deb ... 84s Unpacking help2man (1.49.3) ... 84s Selecting previously unselected package javascript-common. 84s Preparing to unpack .../053-javascript-common_11+nmu1_all.deb ... 84s Unpacking javascript-common (11+nmu1) ... 84s Selecting previously unselected package libblas3:amd64. 84s Preparing to unpack .../054-libblas3_3.12.0-3build2_amd64.deb ... 84s Unpacking libblas3:amd64 (3.12.0-3build2) ... 84s Selecting previously unselected package libgfortran5:amd64. 84s Preparing to unpack .../055-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 84s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 84s Selecting previously unselected package libjs-popper.js. 84s Preparing to unpack .../056-libjs-popper.js_1.16.1+ds-6_all.deb ... 84s Unpacking libjs-popper.js (1.16.1+ds-6) ... 84s Selecting previously unselected package libjs-bootstrap4. 84s Preparing to unpack .../057-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 84s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 84s Selecting previously unselected package libjs-jquery. 84s Preparing to unpack .../058-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 84s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 84s Selecting previously unselected package libjs-underscore. 84s Preparing to unpack .../059-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 84s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 84s Selecting previously unselected package libjs-sphinxdoc. 84s Preparing to unpack .../060-libjs-sphinxdoc_7.4.7-4_all.deb ... 84s Unpacking libjs-sphinxdoc (7.4.7-4) ... 84s Selecting previously unselected package libjson-perl. 84s Preparing to unpack .../061-libjson-perl_4.10000-1_all.deb ... 84s Unpacking libjson-perl (4.10000-1) ... 84s Selecting previously unselected package liblapack3:amd64. 84s Preparing to unpack .../062-liblapack3_3.12.0-3build2_amd64.deb ... 84s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 85s Selecting previously unselected package liblbfgsb0:amd64. 85s Preparing to unpack .../063-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 85s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 85s Selecting previously unselected package libpython3.13-stdlib:amd64. 85s Preparing to unpack .../064-libpython3.13-stdlib_3.13.0-2_amd64.deb ... 85s Unpacking libpython3.13-stdlib:amd64 (3.13.0-2) ... 85s Selecting previously unselected package python3-packaging. 85s Preparing to unpack .../065-python3-packaging_24.1-1_all.deb ... 85s Unpacking python3-packaging (24.1-1) ... 85s Selecting previously unselected package python3-pyproject-hooks. 85s Preparing to unpack .../066-python3-pyproject-hooks_1.2.0-1_all.deb ... 85s Unpacking python3-pyproject-hooks (1.2.0-1) ... 85s Selecting previously unselected package python3-toml. 85s Preparing to unpack .../067-python3-toml_0.10.2-1_all.deb ... 85s Unpacking python3-toml (0.10.2-1) ... 85s Selecting previously unselected package python3-wheel. 85s Preparing to unpack .../068-python3-wheel_0.44.0-1_all.deb ... 85s Unpacking python3-wheel (0.44.0-1) ... 85s Selecting previously unselected package python3-build. 85s Preparing to unpack .../069-python3-build_1.2.2-1_all.deb ... 85s Unpacking python3-build (1.2.2-1) ... 85s Selecting previously unselected package python3-installer. 85s Preparing to unpack .../070-python3-installer_0.7.0+dfsg1-3_all.deb ... 85s Unpacking python3-installer (0.7.0+dfsg1-3) ... 85s Selecting previously unselected package pybuild-plugin-pyproject. 85s Preparing to unpack .../071-pybuild-plugin-pyproject_6.20241024_all.deb ... 85s Unpacking pybuild-plugin-pyproject (6.20241024) ... 85s Selecting previously unselected package python3-aiosqlite. 85s Preparing to unpack .../072-python3-aiosqlite_0.20.0-1_all.deb ... 85s Unpacking python3-aiosqlite (0.20.0-1) ... 85s Selecting previously unselected package python3-colorama. 85s Preparing to unpack .../073-python3-colorama_0.4.6-4_all.deb ... 85s Unpacking python3-colorama (0.4.6-4) ... 85s Selecting previously unselected package python3-click. 85s Preparing to unpack .../074-python3-click_8.1.7-2_all.deb ... 85s Unpacking python3-click (8.1.7-2) ... 85s Selecting previously unselected package python3-six. 85s Preparing to unpack .../075-python3-six_1.16.0-7_all.deb ... 85s Unpacking python3-six (1.16.0-7) ... 85s Selecting previously unselected package python3-dateutil. 85s Preparing to unpack .../076-python3-dateutil_2.9.0-2_all.deb ... 85s Unpacking python3-dateutil (2.9.0-2) ... 85s Selecting previously unselected package python3-numpy. 85s Preparing to unpack .../077-python3-numpy_1%3a1.26.4+ds-11build1_amd64.deb ... 85s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 85s Selecting previously unselected package python3-tz. 85s Preparing to unpack .../078-python3-tz_2024.1-2_all.deb ... 85s Unpacking python3-tz (2024.1-2) ... 85s Selecting previously unselected package python3-pandas-lib:amd64. 85s Preparing to unpack .../079-python3-pandas-lib_2.2.3+dfsg-5_amd64.deb ... 85s Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-5) ... 85s Selecting previously unselected package python3-pandas. 85s Preparing to unpack .../080-python3-pandas_2.2.3+dfsg-5_all.deb ... 85s Unpacking python3-pandas (2.2.3+dfsg-5) ... 85s Selecting previously unselected package python3-greenlet. 85s Preparing to unpack .../081-python3-greenlet_3.0.3-0ubuntu6_amd64.deb ... 85s Unpacking python3-greenlet (3.0.3-0ubuntu6) ... 86s Selecting previously unselected package python3-sqlalchemy. 86s Preparing to unpack .../082-python3-sqlalchemy_2.0.32+ds1-1ubuntu1_all.deb ... 86s Unpacking python3-sqlalchemy (2.0.32+ds1-1ubuntu1) ... 86s Selecting previously unselected package python3-pyomop. 86s Preparing to unpack .../083-python3-pyomop_4.3.0-1_all.deb ... 86s Unpacking python3-pyomop (4.3.0-1) ... 86s Selecting previously unselected package pyomop. 86s Preparing to unpack .../084-pyomop_4.3.0-1_all.deb ... 86s Unpacking pyomop (4.3.0-1) ... 86s Selecting previously unselected package libjs-mathjax. 86s Preparing to unpack .../085-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 86s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 86s Selecting previously unselected package python-pandas-doc. 86s Preparing to unpack .../086-python-pandas-doc_2.2.3+dfsg-5_all.deb ... 86s Unpacking python-pandas-doc (2.2.3+dfsg-5) ... 88s Selecting previously unselected package python-pyomop-doc. 88s Preparing to unpack .../087-python-pyomop-doc_4.3.0-1_all.deb ... 88s Unpacking python-pyomop-doc (4.3.0-1) ... 88s Selecting previously unselected package python-requests-doc. 88s Preparing to unpack .../088-python-requests-doc_2.32.3+dfsg-1ubuntu1_all.deb ... 88s Unpacking python-requests-doc (2.32.3+dfsg-1ubuntu1) ... 88s Selecting previously unselected package python-sklearn-doc. 88s Preparing to unpack .../089-python-sklearn-doc_1.4.2+dfsg-6_all.deb ... 88s Unpacking python-sklearn-doc (1.4.2+dfsg-6) ... 88s Selecting previously unselected package python3.13. 88s Preparing to unpack .../090-python3.13_3.13.0-2_amd64.deb ... 88s Unpacking python3.13 (3.13.0-2) ... 89s Selecting previously unselected package python3-all. 89s Preparing to unpack .../091-python3-all_3.12.7-1_amd64.deb ... 89s Unpacking python3-all (3.12.7-1) ... 89s Selecting previously unselected package python3-commonmark. 89s Preparing to unpack .../092-python3-commonmark_0.9.1-6_all.deb ... 89s Unpacking python3-commonmark (0.9.1-6) ... 89s Selecting previously unselected package python3-decorator. 89s Preparing to unpack .../093-python3-decorator_5.1.1-5_all.deb ... 89s Unpacking python3-decorator (5.1.1-5) ... 89s Selecting previously unselected package python3-defusedxml. 89s Preparing to unpack .../094-python3-defusedxml_0.7.1-2_all.deb ... 89s Unpacking python3-defusedxml (0.7.1-2) ... 89s Selecting previously unselected package python3.12-doc. 89s Preparing to unpack .../095-python3.12-doc_3.12.7-3_all.deb ... 89s Unpacking python3.12-doc (3.12.7-3) ... 89s Selecting previously unselected package python3-doc. 89s Preparing to unpack .../096-python3-doc_3.12.7-1_all.deb ... 89s Unpacking python3-doc (3.12.7-1) ... 89s Selecting previously unselected package python3-roman. 89s Preparing to unpack .../097-python3-roman_4.2-1_all.deb ... 89s Unpacking python3-roman (4.2-1) ... 89s Selecting previously unselected package python3-docutils. 89s Preparing to unpack .../098-python3-docutils_0.21.2+dfsg-2_all.deb ... 89s Unpacking python3-docutils (0.21.2+dfsg-2) ... 89s Selecting previously unselected package python3-imagesize. 89s Preparing to unpack .../099-python3-imagesize_1.4.1-1_all.deb ... 89s Unpacking python3-imagesize (1.4.1-1) ... 89s Selecting previously unselected package python3-iniconfig. 89s Preparing to unpack .../100-python3-iniconfig_1.1.1-2_all.deb ... 89s Unpacking python3-iniconfig (1.1.1-2) ... 89s Selecting previously unselected package python3-pluggy. 89s Preparing to unpack .../101-python3-pluggy_1.5.0-1_all.deb ... 89s Unpacking python3-pluggy (1.5.0-1) ... 89s Selecting previously unselected package python3-pytest. 89s Preparing to unpack .../102-python3-pytest_8.3.3-1_all.deb ... 89s Unpacking python3-pytest (8.3.3-1) ... 89s Selecting previously unselected package sphinx-common. 89s Preparing to unpack .../103-sphinx-common_7.4.7-4_all.deb ... 89s Unpacking sphinx-common (7.4.7-4) ... 89s Selecting previously unselected package python3-alabaster. 89s Preparing to unpack .../104-python3-alabaster_0.7.16-0.1_all.deb ... 89s Unpacking python3-alabaster (0.7.16-0.1) ... 89s Selecting previously unselected package python3-snowballstemmer. 89s Preparing to unpack .../105-python3-snowballstemmer_2.2.0-4build1_all.deb ... 89s Unpacking python3-snowballstemmer (2.2.0-4build1) ... 89s Selecting previously unselected package python3-sphinx. 89s Preparing to unpack .../106-python3-sphinx_7.4.7-4_all.deb ... 89s Unpacking python3-sphinx (7.4.7-4) ... 89s Selecting previously unselected package python3-recommonmark. 89s Preparing to unpack .../107-python3-recommonmark_0.7.1+ds-5_all.deb ... 89s Unpacking python3-recommonmark (0.7.1+ds-5) ... 89s Selecting previously unselected package python3-setuptools-scm. 89s Preparing to unpack .../108-python3-setuptools-scm_8.1.0-1_all.deb ... 89s Unpacking python3-setuptools-scm (8.1.0-1) ... 89s Selecting previously unselected package sphinx-doc. 89s Preparing to unpack .../109-sphinx-doc_7.4.7-4_all.deb ... 89s Unpacking sphinx-doc (7.4.7-4) ... 90s Selecting previously unselected package python-scipy-doc. 90s Preparing to unpack .../110-python-scipy-doc_1.13.1-5_all.deb ... 90s Unpacking python-scipy-doc (1.13.1-5) ... 90s Selecting previously unselected package python3-scipy. 90s Preparing to unpack .../111-python3-scipy_1.13.1-5_amd64.deb ... 90s Unpacking python3-scipy (1.13.1-5) ... 90s Selecting previously unselected package autopkgtest-satdep. 90s Preparing to unpack .../112-1-autopkgtest-satdep.deb ... 90s Unpacking autopkgtest-satdep (0) ... 90s Setting up dh-python (6.20241024) ... 90s Setting up javascript-common (11+nmu1) ... 90s Setting up python3-iniconfig (1.1.1-2) ... 90s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 90s Setting up docutils-doc (0.21.2+dfsg-2) ... 90s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 90s Setting up libjs-popper.js (1.16.1+ds-6) ... 90s Setting up python3-colorama (0.4.6-4) ... 91s Setting up python3-defusedxml (0.7.1-2) ... 91s Setting up libarchive-zip-perl (1.68-1) ... 91s Setting up python3-alabaster (0.7.16-0.1) ... 91s Setting up libdebhelper-perl (13.20ubuntu1) ... 91s Setting up m4 (1.4.19-4build1) ... 91s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 91s Setting up python3-click (8.1.7-2) ... 91s Setting up fonts-open-sans (1.11-2) ... 91s Setting up python3-wheel (0.44.0-1) ... 91s Setting up python3-tz (2024.1-2) ... 91s Setting up help2man (1.49.3) ... 91s Setting up python3-six (1.16.0-7) ... 92s Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... 92s Setting up python3-roman (4.2-1) ... 92s Setting up python3-decorator (5.1.1-5) ... 92s Setting up autotools-dev (20220109.1) ... 92s Setting up libblas3:amd64 (3.12.0-3build2) ... 92s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 92s Setting up python3-packaging (24.1-1) ... 92s Setting up python3-pyproject-hooks (1.2.0-1) ... 92s Setting up python3-snowballstemmer (2.2.0-4build1) ... 93s Setting up python3-greenlet (3.0.3-0ubuntu6) ... 93s Setting up libquadmath0:amd64 (14.2.0-8ubuntu1) ... 93s Setting up python3-aiosqlite (0.20.0-1) ... 93s Setting up libmpc3:amd64 (1.3.1-1build2) ... 93s Setting up autopoint (0.22.5-2) ... 93s Setting up python3-toml (0.10.2-1) ... 93s Setting up python3-installer (0.7.0+dfsg1-3) ... 93s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 93s Setting up autoconf (2.72-3) ... 93s Setting up python3-pluggy (1.5.0-1) ... 93s Setting up libubsan1:amd64 (14.2.0-8ubuntu1) ... 93s Setting up dwz (0.15-1build6) ... 93s Setting up libhwasan0:amd64 (14.2.0-8ubuntu1) ... 93s Setting up libasan8:amd64 (14.2.0-8ubuntu1) ... 93s Setting up libjson-perl (4.10000-1) ... 93s Setting up debugedit (1:5.1-1) ... 93s Setting up python3.13-minimal (3.13.0-2) ... 94s Setting up python3-dateutil (2.9.0-2) ... 94s Setting up sgml-base (1.31) ... 94s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 94s Setting up libtsan2:amd64 (14.2.0-8ubuntu1) ... 94s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 94s Setting up libisl23:amd64 (0.27-1) ... 94s Setting up python3-build (1.2.2-1) ... 95s Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... 95s Setting up libcc1-0:amd64 (14.2.0-8ubuntu1) ... 95s Setting up liblsan0:amd64 (14.2.0-8ubuntu1) ... 95s Setting up libitm1:amd64 (14.2.0-8ubuntu1) ... 95s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 95s Setting up python3-imagesize (1.4.1-1) ... 95s Setting up python3-commonmark (0.9.1-6) ... 95s Setting up automake (1:1.16.5-1.3ubuntu1) ... 95s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 95s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... 95s Setting up liblapack3:amd64 (3.12.0-3build2) ... 95s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 95s Setting up gettext (0.22.5-2) ... 95s Setting up python3.13 (3.13.0-2) ... 96s Setting up pybuild-plugin-pyproject (6.20241024) ... 96s Setting up python3-pytest (8.3.3-1) ... 96s Setting up python3-all (3.12.7-1) ... 96s Setting up python3-setuptools-scm (8.1.0-1) ... 96s Setting up python3-sqlalchemy (2.0.32+ds1-1ubuntu1) ... 98s Setting up intltool-debian (0.35.0+20060710.6) ... 98s Setting up python-scipy-doc (1.13.1-5) ... 98s Setting up cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 98s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 101s Setting up libjs-sphinxdoc (7.4.7-4) ... 101s Setting up python-requests-doc (2.32.3+dfsg-1ubuntu1) ... 101s Setting up cpp-14 (14.2.0-8ubuntu1) ... 101s Setting up dh-strip-nondeterminism (1.14.0-1) ... 101s Setting up xml-core (0.19) ... 101s Setting up libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 101s Setting up python3.12-doc (3.12.7-3) ... 101s Setting up libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 101s Setting up python3-doc (3.12.7-1) ... 101s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 101s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 101s Setting up sphinx-doc (7.4.7-4) ... 101s Setting up python3-scipy (1.13.1-5) ... 106s Setting up python-pandas-doc (2.2.3+dfsg-5) ... 106s Setting up python-pyomop-doc (4.3.0-1) ... 106s Setting up po-debconf (1.0.21+nmu1) ... 106s Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-5) ... 106s Setting up python-sklearn-doc (1.4.2+dfsg-6) ... 106s Setting up python3-pandas (2.2.3+dfsg-5) ... 113s Setting up sphinx-common (7.4.7-4) ... 113s Setting up cpp (4:14.1.0-2ubuntu1) ... 114s Setting up python3-pyomop (4.3.0-1) ... 114s Setting up gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 114s Setting up pyomop (4.3.0-1) ... 114s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 114s Setting up gcc-14 (14.2.0-8ubuntu1) ... 114s Setting up g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 114s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 114s Setting up g++-14 (14.2.0-8ubuntu1) ... 114s Setting up libtool (2.4.7-7build1) ... 114s Setting up gcc (4:14.1.0-2ubuntu1) ... 114s Setting up dh-autoreconf (20) ... 114s Setting up g++ (4:14.1.0-2ubuntu1) ... 114s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 114s Setting up build-essential (12.10ubuntu1) ... 114s Setting up debhelper (13.20ubuntu1) ... 114s Processing triggers for libc-bin (2.40-1ubuntu3) ... 114s Processing triggers for systemd (256.5-2ubuntu4) ... 114s Processing triggers for man-db (2.12.1-3) ... 115s Processing triggers for install-info (7.1.1-1) ... 115s Processing triggers for sgml-base (1.31) ... 115s Setting up docutils-common (0.21.2+dfsg-2) ... 115s Processing triggers for sgml-base (1.31) ... 115s Setting up python3-docutils (0.21.2+dfsg-2) ... 116s Setting up python3-sphinx (7.4.7-4) ... 117s Setting up python3-recommonmark (0.7.1+ds-5) ... 117s /usr/lib/python3/dist-packages/recommonmark/transform.py:254: SyntaxWarning: invalid escape sequence '\w' 117s match = re.search('[ ]?[\w_-]+::.*', language) 117s /usr/lib/python3/dist-packages/recommonmark/transform.py:254: SyntaxWarning: invalid escape sequence '\w' 117s match = re.search('[ ]?[\w_-]+::.*', language) 117s Setting up autopkgtest-satdep (0) ... 121s (Reading database ... 102753 files and directories currently installed.) 121s Removing autopkgtest-satdep (0) ... 121s autopkgtest [14:07:37]: test upstream: [----------------------- 122s ============================= test session starts ============================== 122s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 122s cachedir: .pytest_cache 122s rootdir: /tmp/autopkgtest.UXSocN/autopkgtest_tmp 122s configfile: setup.cfg 122s plugins: typeguard-4.4.1 122s collecting ... collected 7 items 122s 122s tests/test_a_pyomop.py::test_create_cohort ERROR [ 14%] 122s tests/test_ab_vector.py::test_create_patient ERROR [ 28%] 122s tests/test_b_create_vocab.py::test_create_tables ERROR [ 42%] 122s tests/test_b_create_vocab.py::test_create_vocab ERROR [ 57%] 122s tests/test_c_vocab.py::test_vocab ERROR [ 71%] 122s tests/test_d_vector.py::test_create_vector ERROR [ 85%] 122s tests/test_e_llm_query.py::test_create_cohort ERROR [100%] 122s 122s ==================================== ERRORS ==================================== 122s _____________________ ERROR at setup of test_create_cohort _____________________ 122s 122s @pytest.fixture 122s def pyomop_fixture(): 122s > from pyomop import CdmEngineFactory 122s 122s tests/conftest.py:15: 122s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 122s /usr/lib/python3/dist-packages/pyomop/__init__.py:6: in 122s from .vocabulary import CdmVocabulary 122s /usr/lib/python3/dist-packages/pyomop/vocabulary.py:1: in 122s import pandas as pd 122s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 122s 122s from __future__ import annotations 122s 122s import os 122s import warnings 122s 122s __docformat__ = "restructuredtext" 122s 122s # Let users know if they're missing any of our hard dependencies 122s _hard_dependencies = ("numpy", "pytz", "dateutil") 122s _missing_dependencies = [] 122s 122s for _dependency in _hard_dependencies: 122s try: 122s __import__(_dependency) 122s except ImportError as _e: # pragma: no cover 122s _missing_dependencies.append(f"{_dependency}: {_e}") 122s 122s if _missing_dependencies: # pragma: no cover 122s > raise ImportError( 122s "Unable to import required dependencies:\n" + "\n".join(_missing_dependencies) 122s ) 122s E ImportError: Unable to import required dependencies: 122s E numpy: Error importing numpy: you should not try to import numpy from 122s E its source directory; please exit the numpy source tree, and relaunch 122s E your python interpreter from there. 122s 122s /usr/lib/python3/dist-packages/pandas/__init__.py:19: ImportError 122s ____________________ ERROR at setup of test_create_patient _____________________ 122s 122s @pytest.fixture 122s def pyomop_fixture(): 122s > from pyomop import CdmEngineFactory 122s 122s tests/conftest.py:15: 122s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 122s /usr/lib/python3/dist-packages/pyomop/__init__.py:6: in 122s from .vocabulary import CdmVocabulary 122s /usr/lib/python3/dist-packages/pyomop/vocabulary.py:1: in 122s import pandas as pd 122s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 122s 122s from __future__ import annotations 122s 122s import os 122s import warnings 122s 122s __docformat__ = "restructuredtext" 122s 122s # Let users know if they're missing any of our hard dependencies 122s _hard_dependencies = ("numpy", "pytz", "dateutil") 122s _missing_dependencies = [] 122s 122s for _dependency in _hard_dependencies: 122s try: 122s __import__(_dependency) 122s except ImportError as _e: # pragma: no cover 122s _missing_dependencies.append(f"{_dependency}: {_e}") 122s 122s if _missing_dependencies: # pragma: no cover 122s > raise ImportError( 122s "Unable to import required dependencies:\n" + "\n".join(_missing_dependencies) 122s ) 122s E ImportError: Unable to import required dependencies: 122s E numpy: Error importing numpy: you should not try to import numpy from 122s E its source directory; please exit the numpy source tree, and relaunch 122s E your python interpreter from there. 122s 122s /usr/lib/python3/dist-packages/pandas/__init__.py:19: ImportError 122s _____________________ ERROR at setup of test_create_tables _____________________ 122s 122s @pytest.fixture 122s def pyomop_fixture(): 122s > from pyomop import CdmEngineFactory 122s 122s tests/conftest.py:15: 122s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 122s /usr/lib/python3/dist-packages/pyomop/__init__.py:6: in 122s from .vocabulary import CdmVocabulary 122s /usr/lib/python3/dist-packages/pyomop/vocabulary.py:1: in 122s import pandas as pd 122s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 122s 122s from __future__ import annotations 122s 122s import os 122s import warnings 122s 122s __docformat__ = "restructuredtext" 122s 122s # Let users know if they're missing any of our hard dependencies 122s _hard_dependencies = ("numpy", "pytz", "dateutil") 122s _missing_dependencies = [] 122s 122s for _dependency in _hard_dependencies: 122s try: 122s __import__(_dependency) 122s except ImportError as _e: # pragma: no cover 122s _missing_dependencies.append(f"{_dependency}: {_e}") 122s 122s if _missing_dependencies: # pragma: no cover 122s > raise ImportError( 122s "Unable to import required dependencies:\n" + "\n".join(_missing_dependencies) 122s ) 122s E ImportError: Unable to import required dependencies: 122s E numpy: Error importing numpy: you should not try to import numpy from 122s E its source directory; please exit the numpy source tree, and relaunch 122s E your python interpreter from there. 122s 122s /usr/lib/python3/dist-packages/pandas/__init__.py:19: ImportError 122s _____________________ ERROR at setup of test_create_vocab ______________________ 122s 122s @pytest.fixture 122s def pyomop_fixture(): 122s > from pyomop import CdmEngineFactory 122s 122s tests/conftest.py:15: 122s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 122s /usr/lib/python3/dist-packages/pyomop/__init__.py:6: in 122s from .vocabulary import CdmVocabulary 122s /usr/lib/python3/dist-packages/pyomop/vocabulary.py:1: in 122s import pandas as pd 122s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 122s 122s from __future__ import annotations 122s 122s import os 122s import warnings 122s 122s __docformat__ = "restructuredtext" 122s 122s # Let users know if they're missing any of our hard dependencies 122s _hard_dependencies = ("numpy", "pytz", "dateutil") 122s _missing_dependencies = [] 122s 122s for _dependency in _hard_dependencies: 122s try: 122s __import__(_dependency) 122s except ImportError as _e: # pragma: no cover 122s _missing_dependencies.append(f"{_dependency}: {_e}") 122s 122s if _missing_dependencies: # pragma: no cover 122s > raise ImportError( 122s "Unable to import required dependencies:\n" + "\n".join(_missing_dependencies) 122s ) 122s E ImportError: Unable to import required dependencies: 122s E numpy: Error importing numpy: you should not try to import numpy from 122s E its source directory; please exit the numpy source tree, and relaunch 122s E your python interpreter from there. 122s 122s /usr/lib/python3/dist-packages/pandas/__init__.py:19: ImportError 122s _________________________ ERROR at setup of test_vocab _________________________ 122s 122s @pytest.fixture 122s def pyomop_fixture(): 122s > from pyomop import CdmEngineFactory 122s 122s tests/conftest.py:15: 122s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 122s /usr/lib/python3/dist-packages/pyomop/__init__.py:6: in 122s from .vocabulary import CdmVocabulary 122s /usr/lib/python3/dist-packages/pyomop/vocabulary.py:1: in 122s import pandas as pd 122s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 122s 122s from __future__ import annotations 122s 122s import os 122s import warnings 122s 122s __docformat__ = "restructuredtext" 122s 122s # Let users know if they're missing any of our hard dependencies 122s _hard_dependencies = ("numpy", "pytz", "dateutil") 122s _missing_dependencies = [] 122s 122s for _dependency in _hard_dependencies: 122s try: 122s __import__(_dependency) 122s except ImportError as _e: # pragma: no cover 122s _missing_dependencies.append(f"{_dependency}: {_e}") 122s 122s if _missing_dependencies: # pragma: no cover 122s > raise ImportError( 122s "Unable to import required dependencies:\n" + "\n".join(_missing_dependencies) 122s ) 122s E ImportError: Unable to import required dependencies: 122s E numpy: Error importing numpy: you should not try to import numpy from 122s E its source directory; please exit the numpy source tree, and relaunch 122s E your python interpreter from there. 122s 122s /usr/lib/python3/dist-packages/pandas/__init__.py:19: ImportError 122s _____________________ ERROR at setup of test_create_vector _____________________ 122s 122s @pytest.fixture 122s def pyomop_fixture(): 122s > from pyomop import CdmEngineFactory 122s 122s tests/conftest.py:15: 122s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 122s /usr/lib/python3/dist-packages/pyomop/__init__.py:6: in 122s from .vocabulary import CdmVocabulary 122s /usr/lib/python3/dist-packages/pyomop/vocabulary.py:1: in 122s import pandas as pd 122s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 122s 122s from __future__ import annotations 122s 122s import os 122s import warnings 122s 122s __docformat__ = "restructuredtext" 122s 122s # Let users know if they're missing any of our hard dependencies 122s _hard_dependencies = ("numpy", "pytz", "dateutil") 122s _missing_dependencies = [] 122s 122s for _dependency in _hard_dependencies: 122s try: 122s __import__(_dependency) 122s except ImportError as _e: # pragma: no cover 122s _missing_dependencies.append(f"{_dependency}: {_e}") 122s 122s if _missing_dependencies: # pragma: no cover 122s > raise ImportError( 122s "Unable to import required dependencies:\n" + "\n".join(_missing_dependencies) 122s ) 122s E ImportError: Unable to import required dependencies: 122s E numpy: Error importing numpy: you should not try to import numpy from 122s E its source directory; please exit the numpy source tree, and relaunch 122s E your python interpreter from there. 122s 122s /usr/lib/python3/dist-packages/pandas/__init__.py:19: ImportError 122s _____________________ ERROR at setup of test_create_cohort _____________________ 122s 122s @pytest.fixture 122s def pyomop_fixture(): 122s > from pyomop import CdmEngineFactory 122s 122s tests/conftest.py:15: 122s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 122s /usr/lib/python3/dist-packages/pyomop/__init__.py:6: in 122s from .vocabulary import CdmVocabulary 122s /usr/lib/python3/dist-packages/pyomop/vocabulary.py:1: in 122s import pandas as pd 122s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 122s 122s from __future__ import annotations 122s 122s import os 122s import warnings 122s 122s __docformat__ = "restructuredtext" 122s 122s # Let users know if they're missing any of our hard dependencies 122s _hard_dependencies = ("numpy", "pytz", "dateutil") 122s _missing_dependencies = [] 122s 122s for _dependency in _hard_dependencies: 122s try: 122s __import__(_dependency) 122s except ImportError as _e: # pragma: no cover 122s _missing_dependencies.append(f"{_dependency}: {_e}") 122s 122s if _missing_dependencies: # pragma: no cover 122s > raise ImportError( 122s "Unable to import required dependencies:\n" + "\n".join(_missing_dependencies) 122s ) 122s E ImportError: Unable to import required dependencies: 122s E numpy: Error importing numpy: you should not try to import numpy from 122s E its source directory; please exit the numpy source tree, and relaunch 122s E your python interpreter from there. 122s 122s /usr/lib/python3/dist-packages/pandas/__init__.py:19: ImportError 122s =========================== short test summary info ============================ 122s ERROR tests/test_a_pyomop.py::test_create_cohort - ImportError: Unable to imp... 122s ERROR tests/test_ab_vector.py::test_create_patient - ImportError: Unable to i... 122s ERROR tests/test_b_create_vocab.py::test_create_tables - ImportError: Unable ... 122s ERROR tests/test_b_create_vocab.py::test_create_vocab - ImportError: Unable t... 122s ERROR tests/test_c_vocab.py::test_vocab - ImportError: Unable to import requi... 122s ERROR tests/test_d_vector.py::test_create_vector - ImportError: Unable to imp... 122s ERROR tests/test_e_llm_query.py::test_create_cohort - ImportError: Unable to ... 122s ============================== 7 errors in 0.40s =============================== 122s autopkgtest [14:07:38]: test upstream: -----------------------] 123s upstream FAIL non-zero exit status 1 123s autopkgtest [14:07:39]: test upstream: - - - - - - - - - - results - - - - - - - - - - 123s autopkgtest [14:07:39]: @@@@@@@@@@@@@@@@@@@@ summary 123s upstream FAIL non-zero exit status 1 128s nova [W] Skipping flock for amd64 128s Creating nova instance adt-plucky-amd64-python-pyomop-20241114-140536-juju-7f2275-prod-proposed-migration-environment-20-dac89698-dcea-4033-906c-9e8fb65620b1 from image adt/ubuntu-plucky-amd64-server-20241114.img (UUID 79d80331-8736-463c-82c6-8c9e13c0a4ca)...