0s autopkgtest [10:17:16]: starting date and time: 2024-11-13 10:17:16+0000 0s autopkgtest [10:17:16]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [10:17:16]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ttx38g5v/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-pynndescent --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@lcy02-46.secgroup --name adt-plucky-amd64-python-pynndescent-20241113-101716-juju-7f2275-prod-proposed-migration-environment-15-75ff7a62-89b9-4b1d-ac4e-1159b44102c7 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 596s autopkgtest [10:27:12]: testbed dpkg architecture: amd64 596s autopkgtest [10:27:12]: testbed apt version: 2.9.8 596s autopkgtest [10:27:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup 597s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 597s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 597s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 597s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 597s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 597s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [65.2 kB] 597s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [111 kB] 597s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 597s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [255 kB] 597s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [639 kB] 597s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [37.7 kB] 597s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [13.0 kB] 597s Fetched 2175 kB in 0s (6998 kB/s) 597s Reading package lists... 602s Reading package lists... 602s Building dependency tree... 602s Reading state information... 603s Calculating upgrade... 603s The following NEW packages will be installed: 603s python3.13-gdbm 603s The following packages will be upgraded: 603s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 603s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 603s Need to get 253 kB of archives. 603s After this operation, 147 kB of additional disk space will be used. 603s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 603s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 603s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 603s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 603s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 603s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.23.2-5ubuntu4 [152 kB] 603s Fetched 253 kB in 0s (12.4 MB/s) 604s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 604s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 604s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 604s Setting up python3-minimal (3.12.7-1) ... 604s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 604s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 604s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 604s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 604s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 604s Selecting previously unselected package python3.13-gdbm. 604s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 604s Unpacking python3.13-gdbm (3.13.0-2) ... 604s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 604s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 604s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_amd64.deb ... 604s Unpacking libgpgme11t64:amd64 (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 604s Setting up libgpgme11t64:amd64 (1.23.2-5ubuntu4) ... 604s Setting up python3.13-gdbm (3.13.0-2) ... 604s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 604s Setting up python3 (3.12.7-1) ... 604s Setting up python3-gdbm:amd64 (3.12.7-1) ... 604s Processing triggers for man-db (2.12.1-3) ... 605s Processing triggers for libc-bin (2.40-1ubuntu3) ... 605s Reading package lists... 606s Building dependency tree... 606s Reading state information... 606s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 606s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 606s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 606s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 606s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 608s Reading package lists... 608s Reading package lists... 608s Building dependency tree... 608s Reading state information... 608s Calculating upgrade... 608s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 608s Reading package lists... 609s Building dependency tree... 609s Reading state information... 609s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 610s autopkgtest [10:27:26]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 611s autopkgtest [10:27:27]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pynndescent 611s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pynndescent 0.5.11-1 (dsc) [2465 B] 611s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pynndescent 0.5.11-1 (tar) [2797 kB] 611s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pynndescent 0.5.11-1 (diff) [5340 B] 612s gpgv: Signature made Fri May 31 23:06:56 2024 UTC 612s gpgv: using RSA key A62D2CFBD50B9B5BF360D54B159EB5C4EFC8774C 612s gpgv: Can't check signature: No public key 612s dpkg-source: warning: cannot verify inline signature for ./python-pynndescent_0.5.11-1.dsc: no acceptable signature found 612s autopkgtest [10:27:28]: testing package python-pynndescent version 0.5.11-1 615s autopkgtest [10:27:31]: build not needed 618s autopkgtest [10:27:34]: test run-unit-test: preparing testbed 620s Reading package lists... 620s Building dependency tree... 620s Reading state information... 621s Starting pkgProblemResolver with broken count: 0 621s Starting 2 pkgProblemResolver with broken count: 0 621s Done 621s The following additional packages will be installed: 621s libblas3 libgfortran5 libgomp1 libhwloc15 liblapack3 liblbfgsb0 libllvm14t64 621s libpfm4 libpython3.13-minimal libpython3.13-stdlib libtbb12 libtbbbind-2-5 621s libtbbmalloc2 llvm-14 llvm-14-linker-tools llvm-14-runtime python3-all 621s python3-decorator python3-iniconfig python3-joblib python3-llvmlite 621s python3-numba python3-numpy python3-packaging python3-pluggy 621s python3-pynndescent python3-pytest python3-scipy python3-sklearn 621s python3-sklearn-lib python3-threadpoolctl python3.13 python3.13-minimal 621s Suggested packages: 621s libhwloc-contrib-plugins llvm-14-doc python-joblib-doc llvmlite-doc 621s nvidia-cuda-toolkit gcc gfortran python-numpy-doc python3-dev 621s python-scipy-doc python3-dap python-sklearn-doc ipython3 python3.13-venv 621s python3.13-doc binfmt-support 621s Recommended packages: 621s libhwloc-plugins llvm-14-dev python3-simplejson python3-psutil numba-doc 621s python3-pip g++ | c++-compiler python3-pil python3-matplotlib 621s The following NEW packages will be installed: 621s autopkgtest-satdep libblas3 libgfortran5 libgomp1 libhwloc15 liblapack3 621s liblbfgsb0 libllvm14t64 libpfm4 libpython3.13-minimal libpython3.13-stdlib 621s libtbb12 libtbbbind-2-5 libtbbmalloc2 llvm-14 llvm-14-linker-tools 621s llvm-14-runtime python3-all python3-decorator python3-iniconfig 621s python3-joblib python3-llvmlite python3-numba python3-numpy 621s python3-packaging python3-pluggy python3-pynndescent python3-pytest 621s python3-scipy python3-sklearn python3-sklearn-lib python3-threadpoolctl 621s python3.13 python3.13-minimal 621s 0 upgraded, 34 newly installed, 0 to remove and 0 not upgraded. 621s Need to get 80.5 MB/80.5 MB of archives. 621s After this operation, 352 MB of additional disk space will be used. 621s Get:1 /tmp/autopkgtest.2kiPlW/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [724 B] 621s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 622s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 622s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 622s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 622s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 622s Get:7 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc15 amd64 2.11.2-1 [193 kB] 622s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 622s Get:9 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 622s Get:10 http://ftpmaster.internal/ubuntu plucky/universe amd64 libllvm14t64 amd64 1:14.0.6-20 [24.0 MB] 622s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 622s Get:12 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbbmalloc2 amd64 2021.12.0-1ubuntu2 [52.5 kB] 622s Get:13 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbbbind-2-5 amd64 2021.12.0-1ubuntu2 [15.4 kB] 622s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbb12 amd64 2021.12.0-1ubuntu2 [89.3 kB] 622s Get:15 http://ftpmaster.internal/ubuntu plucky/universe amd64 llvm-14-runtime amd64 1:14.0.6-20 [481 kB] 622s Get:16 http://ftpmaster.internal/ubuntu plucky/universe amd64 llvm-14-linker-tools amd64 1:14.0.6-20 [1342 kB] 622s Get:17 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpfm4 amd64 4.13.0+git83-g91970fe-1 [429 kB] 622s Get:18 http://ftpmaster.internal/ubuntu plucky/universe amd64 llvm-14 amd64 1:14.0.6-20 [12.7 MB] 623s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 623s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 623s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 623s Get:22 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 623s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.3.2-5 [206 kB] 623s Get:24 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-llvmlite amd64 0.42.0-1build2 [166 kB] 623s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 623s Get:26 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB] 623s Get:27 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-numba amd64 0.59.1+dfsg-1 [1770 kB] 623s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 623s Get:29 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 623s Get:30 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 623s Get:31 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sklearn-lib amd64 1.4.2+dfsg-6 [3920 kB] 623s Get:32 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sklearn all 1.4.2+dfsg-6 [2257 kB] 623s Get:33 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pynndescent amd64 0.5.11-1 [43.7 kB] 623s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 623s Fetched 80.5 MB in 2s (49.3 MB/s) 623s Selecting previously unselected package libpython3.13-minimal:amd64. 623s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75548 files and directories currently installed.) 623s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_amd64.deb ... 623s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 623s Selecting previously unselected package python3.13-minimal. 623s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_amd64.deb ... 623s Unpacking python3.13-minimal (3.13.0-2) ... 623s Selecting previously unselected package libblas3:amd64. 623s Preparing to unpack .../02-libblas3_3.12.0-3build2_amd64.deb ... 623s Unpacking libblas3:amd64 (3.12.0-3build2) ... 623s Selecting previously unselected package libgfortran5:amd64. 623s Preparing to unpack .../03-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 623s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 624s Selecting previously unselected package libgomp1:amd64. 624s Preparing to unpack .../04-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 624s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 624s Selecting previously unselected package libhwloc15:amd64. 624s Preparing to unpack .../05-libhwloc15_2.11.2-1_amd64.deb ... 624s Unpacking libhwloc15:amd64 (2.11.2-1) ... 624s Selecting previously unselected package liblapack3:amd64. 624s Preparing to unpack .../06-liblapack3_3.12.0-3build2_amd64.deb ... 624s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 624s Selecting previously unselected package liblbfgsb0:amd64. 624s Preparing to unpack .../07-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 624s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 624s Selecting previously unselected package libllvm14t64:amd64. 624s Preparing to unpack .../08-libllvm14t64_1%3a14.0.6-20_amd64.deb ... 624s Unpacking libllvm14t64:amd64 (1:14.0.6-20) ... 624s Selecting previously unselected package libpython3.13-stdlib:amd64. 624s Preparing to unpack .../09-libpython3.13-stdlib_3.13.0-2_amd64.deb ... 624s Unpacking libpython3.13-stdlib:amd64 (3.13.0-2) ... 624s Selecting previously unselected package libtbbmalloc2:amd64. 624s Preparing to unpack .../10-libtbbmalloc2_2021.12.0-1ubuntu2_amd64.deb ... 624s Unpacking libtbbmalloc2:amd64 (2021.12.0-1ubuntu2) ... 624s Selecting previously unselected package libtbbbind-2-5:amd64. 624s Preparing to unpack .../11-libtbbbind-2-5_2021.12.0-1ubuntu2_amd64.deb ... 624s Unpacking libtbbbind-2-5:amd64 (2021.12.0-1ubuntu2) ... 624s Selecting previously unselected package libtbb12:amd64. 624s Preparing to unpack .../12-libtbb12_2021.12.0-1ubuntu2_amd64.deb ... 624s Unpacking libtbb12:amd64 (2021.12.0-1ubuntu2) ... 624s Selecting previously unselected package llvm-14-runtime. 624s Preparing to unpack .../13-llvm-14-runtime_1%3a14.0.6-20_amd64.deb ... 624s Unpacking llvm-14-runtime (1:14.0.6-20) ... 625s Selecting previously unselected package llvm-14-linker-tools. 625s Preparing to unpack .../14-llvm-14-linker-tools_1%3a14.0.6-20_amd64.deb ... 625s Unpacking llvm-14-linker-tools (1:14.0.6-20) ... 625s Selecting previously unselected package libpfm4:amd64. 625s Preparing to unpack .../15-libpfm4_4.13.0+git83-g91970fe-1_amd64.deb ... 625s Unpacking libpfm4:amd64 (4.13.0+git83-g91970fe-1) ... 625s Selecting previously unselected package llvm-14. 625s Preparing to unpack .../16-llvm-14_1%3a14.0.6-20_amd64.deb ... 625s Unpacking llvm-14 (1:14.0.6-20) ... 625s Selecting previously unselected package python3.13. 625s Preparing to unpack .../17-python3.13_3.13.0-2_amd64.deb ... 625s Unpacking python3.13 (3.13.0-2) ... 625s Selecting previously unselected package python3-all. 625s Preparing to unpack .../18-python3-all_3.12.7-1_amd64.deb ... 625s Unpacking python3-all (3.12.7-1) ... 625s Selecting previously unselected package python3-decorator. 625s Preparing to unpack .../19-python3-decorator_5.1.1-5_all.deb ... 625s Unpacking python3-decorator (5.1.1-5) ... 625s Selecting previously unselected package python3-iniconfig. 625s Preparing to unpack .../20-python3-iniconfig_1.1.1-2_all.deb ... 625s Unpacking python3-iniconfig (1.1.1-2) ... 625s Selecting previously unselected package python3-joblib. 625s Preparing to unpack .../21-python3-joblib_1.3.2-5_all.deb ... 625s Unpacking python3-joblib (1.3.2-5) ... 625s Selecting previously unselected package python3-llvmlite. 625s Preparing to unpack .../22-python3-llvmlite_0.42.0-1build2_amd64.deb ... 625s Unpacking python3-llvmlite (0.42.0-1build2) ... 625s Selecting previously unselected package python3-numpy. 625s Preparing to unpack .../23-python3-numpy_1%3a1.26.4+ds-11build1_amd64.deb ... 625s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 625s Selecting previously unselected package python3-scipy. 625s Preparing to unpack .../24-python3-scipy_1.13.1-5_amd64.deb ... 625s Unpacking python3-scipy (1.13.1-5) ... 626s Selecting previously unselected package python3-numba. 626s Preparing to unpack .../25-python3-numba_0.59.1+dfsg-1_amd64.deb ... 626s Unpacking python3-numba (0.59.1+dfsg-1) ... 626s Selecting previously unselected package python3-packaging. 626s Preparing to unpack .../26-python3-packaging_24.1-1_all.deb ... 626s Unpacking python3-packaging (24.1-1) ... 626s Selecting previously unselected package python3-pluggy. 626s Preparing to unpack .../27-python3-pluggy_1.5.0-1_all.deb ... 626s Unpacking python3-pluggy (1.5.0-1) ... 626s Selecting previously unselected package python3-threadpoolctl. 626s Preparing to unpack .../28-python3-threadpoolctl_3.1.0-1_all.deb ... 626s Unpacking python3-threadpoolctl (3.1.0-1) ... 626s Selecting previously unselected package python3-sklearn-lib:amd64. 626s Preparing to unpack .../29-python3-sklearn-lib_1.4.2+dfsg-6_amd64.deb ... 626s Unpacking python3-sklearn-lib:amd64 (1.4.2+dfsg-6) ... 626s Selecting previously unselected package python3-sklearn. 626s Preparing to unpack .../30-python3-sklearn_1.4.2+dfsg-6_all.deb ... 626s Unpacking python3-sklearn (1.4.2+dfsg-6) ... 627s Selecting previously unselected package python3-pynndescent. 627s Preparing to unpack .../31-python3-pynndescent_0.5.11-1_amd64.deb ... 627s Unpacking python3-pynndescent (0.5.11-1) ... 627s Selecting previously unselected package python3-pytest. 627s Preparing to unpack .../32-python3-pytest_8.3.3-1_all.deb ... 627s Unpacking python3-pytest (8.3.3-1) ... 627s Selecting previously unselected package autopkgtest-satdep. 627s Preparing to unpack .../33-1-autopkgtest-satdep.deb ... 627s Unpacking autopkgtest-satdep (0) ... 627s Setting up python3-iniconfig (1.1.1-2) ... 627s Setting up libtbbmalloc2:amd64 (2021.12.0-1ubuntu2) ... 627s Setting up python3-joblib (1.3.2-5) ... 627s Setting up python3-threadpoolctl (3.1.0-1) ... 628s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 628s Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... 628s Setting up python3-decorator (5.1.1-5) ... 628s Setting up libblas3:amd64 (3.12.0-3build2) ... 628s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 628s Setting up python3-packaging (24.1-1) ... 628s Setting up libpfm4:amd64 (4.13.0+git83-g91970fe-1) ... 628s Setting up libhwloc15:amd64 (2.11.2-1) ... 628s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 628s Setting up libllvm14t64:amd64 (1:14.0.6-20) ... 628s Setting up python3-pluggy (1.5.0-1) ... 628s Setting up python3.13-minimal (3.13.0-2) ... 629s Setting up llvm-14-linker-tools (1:14.0.6-20) ... 629s Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... 629s Setting up liblapack3:amd64 (3.12.0-3build2) ... 629s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 629s Setting up python3.13 (3.13.0-2) ... 630s Setting up python3-pytest (8.3.3-1) ... 631s Setting up python3-all (3.12.7-1) ... 631s Setting up libtbbbind-2-5:amd64 (2021.12.0-1ubuntu2) ... 631s Setting up llvm-14-runtime (1:14.0.6-20) ... 631s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 634s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 634s Setting up llvm-14 (1:14.0.6-20) ... 634s Setting up python3-scipy (1.13.1-5) ... 641s Setting up python3-sklearn-lib:amd64 (1.4.2+dfsg-6) ... 641s Setting up libtbb12:amd64 (2021.12.0-1ubuntu2) ... 641s Setting up python3-llvmlite (0.42.0-1build2) ... 641s Setting up python3-sklearn (1.4.2+dfsg-6) ... 645s Setting up python3-numba (0.59.1+dfsg-1) ... 645s update-alternatives: using /usr/share/python3-numba/numba to provide /usr/bin/numba (numba) in auto mode 649s Setting up python3-pynndescent (0.5.11-1) ... 650s Setting up autopkgtest-satdep (0) ... 650s Processing triggers for systemd (256.5-2ubuntu4) ... 650s Processing triggers for man-db (2.12.1-3) ... 650s Processing triggers for libc-bin (2.40-1ubuntu3) ... 653s (Reading database ... 81007 files and directories currently installed.) 653s Removing autopkgtest-satdep (0) ... 653s autopkgtest [10:28:09]: test run-unit-test: [----------------------- 653s Testing with python3.13: 654s ImportError while loading conftest '/tmp/autopkgtest.2kiPlW/build.BSM/src/pynndescent/tests/conftest.py'. 654s ../build.BSM/src/pynndescent/__init__.py:3: in 654s import numba 654s /usr/lib/python3/dist-packages/numba/__init__.py:56: in 654s _ensure_critical_deps() 654s /usr/lib/python3/dist-packages/numba/__init__.py:34: in _ensure_critical_deps 654s import numpy as np 654s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 654s raise ImportError(msg) from e 654s E ImportError: Error importing numpy: you should not try to import numpy from 654s E its source directory; please exit the numpy source tree, and relaunch 654s E your python interpreter from there. 654s autopkgtest [10:28:10]: test run-unit-test: -----------------------] 654s autopkgtest [10:28:10]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 654s run-unit-test FAIL non-zero exit status 4 654s autopkgtest [10:28:10]: @@@@@@@@@@@@@@@@@@@@ summary 654s run-unit-test FAIL non-zero exit status 4 675s nova [W] Skipping flock for amd64 675s Creating nova instance adt-plucky-amd64-python-pynndescent-20241113-101716-juju-7f2275-prod-proposed-migration-environment-15-75ff7a62-89b9-4b1d-ac4e-1159b44102c7 from image adt/ubuntu-plucky-amd64-server-20241113.img (UUID 76b850f9-98f4-4b79-af06-fa11000b95b2)...