0s autopkgtest [14:05:51]: starting date and time: 2024-11-03 14:05:51+0000 0s autopkgtest [14:05:51]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [14:05:51]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.hehwhgj7/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:htslib --apt-upgrade python-pyfaidx --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=htslib/1.20+ds-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-34.secgroup --name adt-plucky-amd64-python-pyfaidx-20241103-140551-juju-7f2275-prod-proposed-migration-environment-2-1380cbf5-c8b6-47d7-afa0-c98e416dfef8 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 69s autopkgtest [14:07:00]: testbed dpkg architecture: amd64 69s autopkgtest [14:07:00]: testbed apt version: 2.9.8 69s autopkgtest [14:07:00]: @@@@@@@@@@@@@@@@@@@@ test bed setup 69s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 69s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 69s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [2268 kB] 69s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [31.2 kB] 69s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [177 kB] 69s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [165 kB] 69s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [238 kB] 69s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 69s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [1715 kB] 69s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [833 kB] 69s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [18.1 kB] 69s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [58.6 kB] 70s Fetched 5618 kB in 1s (10.1 MB/s) 70s Reading package lists... 71s Reading package lists... 72s Building dependency tree... 72s Reading state information... 72s Calculating upgrade... 72s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 72s Reading package lists... 72s Building dependency tree... 72s Reading state information... 73s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 73s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 73s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 73s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 73s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 74s Reading package lists... 74s Reading package lists... 74s Building dependency tree... 74s Reading state information... 74s Calculating upgrade... 75s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 75s Reading package lists... 75s Building dependency tree... 75s Reading state information... 75s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 76s autopkgtest [14:07:07]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 76s autopkgtest [14:07:07]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pyfaidx 77s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pyfaidx 0.8.1.2-1 (dsc) [2578 B] 77s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pyfaidx 0.8.1.2-1 (tar) [96.5 kB] 77s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pyfaidx 0.8.1.2-1 (diff) [7004 B] 77s gpgv: Signature made Sun Aug 11 17:37:37 2024 UTC 77s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 77s gpgv: issuer "emollier@debian.org" 77s gpgv: Can't check signature: No public key 77s dpkg-source: warning: cannot verify inline signature for ./python-pyfaidx_0.8.1.2-1.dsc: no acceptable signature found 77s autopkgtest [14:07:08]: testing package python-pyfaidx version 0.8.1.2-1 77s autopkgtest [14:07:08]: build not needed 77s autopkgtest [14:07:08]: test run-unit-test: preparing testbed 77s Reading package lists... 78s Building dependency tree... 78s Reading state information... 78s Starting pkgProblemResolver with broken count: 0 78s Starting 2 pkgProblemResolver with broken count: 0 78s Done 78s The following additional packages will be installed: 78s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 78s libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libgfortran5 78s libgomp1 libgraphite2-3 libharfbuzz0b libhtscodecs2 libimagequant0 libjbig0 78s libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 libopenjp2-7 78s libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 78s libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 python-pyfaidx-examples 78s python3-all python3-biopython python3-cairo python3-freetype 78s python3-importlib-metadata python3-iniconfig python3-numpy python3-packaging 78s python3-pil python3-pluggy python3-pyfaidx python3-pytest python3-reportlab 78s python3-rlpycairo sgml-base tabix w3c-sgml-lib x11-common xfonts-encodings 78s xfonts-utils xml-core 78s Suggested packages: 78s fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre liblcms2-utils 78s python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 78s phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf 78s python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise 78s gcc gfortran python-numpy-doc python3-dev python-pil-doc pdf-viewer 78s python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm 78s sgml-base-doc debhelper 78s Recommended packages: 78s python-biopython-doc ncbi-blast+ python3-olefile fonts-dejavu-extra 79s The following NEW packages will be installed: 79s autopkgtest-satdep fontconfig-config fonts-dejavu-core fonts-dejavu-mono 79s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 79s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhtscodecs2 79s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 79s liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 79s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 79s python-pyfaidx-examples python3-all python3-biopython python3-cairo 79s python3-freetype python3-importlib-metadata python3-iniconfig python3-numpy 79s python3-packaging python3-pil python3-pluggy python3-pyfaidx python3-pytest 79s python3-reportlab python3-rlpycairo sgml-base tabix w3c-sgml-lib x11-common 79s xfonts-encodings xfonts-utils xml-core 79s 0 upgraded, 55 newly installed, 0 to remove and 0 not upgraded. 79s Need to get 29.3 MB/29.3 MB of archives. 79s After this operation, 93.1 MB of additional disk space will be used. 79s Get:1 /tmp/autopkgtest.YNx2So/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [752 B] 79s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB] 79s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 79s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 79s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB] 79s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 79s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 79s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-utils amd64 1:7.7+7 [97.1 kB] 79s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB] 79s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 79s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 79s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 79s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.42.2-1build1 [279 kB] 79s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 79s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 79s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 79s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 79s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.21-1 [49.8 kB] 79s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-7ubuntu1 [909 kB] 79s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-7ubuntu1 [148 kB] 79s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 79s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 9.0.0-1 [487 kB] 79s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhtscodecs2 amd64 1.6.0-1build1 [98.8 kB] 79s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 79s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 79s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 79s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 79s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.14-2build1 [161 kB] 79s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu2 [179 kB] 79s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 79s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 79s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 79s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 79s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 79s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 79s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 79s Get:37 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-pyfaidx-examples all 0.8.1.2-1 [38.0 kB] 79s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.12.6-0ubuntu1 [886 B] 79s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 79s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu1 [184 kB] 79s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 10.4.0-1ubuntu1 [463 kB] 79s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cairo amd64 1.26.1-2 [119 kB] 79s Get:43 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-freetype all 2.4.0-2 [81.3 kB] 79s Get:44 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-rlpycairo all 0.3.0-3 [9130 B] 79s Get:45 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-reportlab all 4.2.2-1 [1130 kB] 79s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB] 79s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB] 79s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-biopython amd64 1.83+dfsg1-3 [1653 kB] 79s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-importlib-metadata all 8.2.0-2 [20.3 kB] 79s Get:50 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 79s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 79s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 79s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyfaidx all 0.8.1.2-1 [29.6 kB] 79s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.2-1 [251 kB] 79s Get:55 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 tabix amd64 1.20+ds-2 [640 kB] 79s Fetched 29.3 MB in 0s (102 MB/s) 79s Selecting previously unselected package sgml-base. 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75323 files and directories currently installed.) 79s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 79s Unpacking sgml-base (1.31) ... 79s Selecting previously unselected package fonts-dejavu-mono. 79s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 79s Unpacking fonts-dejavu-mono (2.37-8) ... 79s Selecting previously unselected package fonts-dejavu-core. 79s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 79s Unpacking fonts-dejavu-core (2.37-8) ... 80s Selecting previously unselected package libfontenc1:amd64. 80s Preparing to unpack .../03-libfontenc1_1%3a1.1.8-1build1_amd64.deb ... 80s Unpacking libfontenc1:amd64 (1:1.1.8-1build1) ... 80s Selecting previously unselected package x11-common. 80s Preparing to unpack .../04-x11-common_1%3a7.7+23ubuntu3_all.deb ... 80s Unpacking x11-common (1:7.7+23ubuntu3) ... 80s Selecting previously unselected package xfonts-encodings. 80s Preparing to unpack .../05-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 80s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 80s Selecting previously unselected package xfonts-utils. 80s Preparing to unpack .../06-xfonts-utils_1%3a7.7+7_amd64.deb ... 80s Unpacking xfonts-utils (1:7.7+7) ... 80s Selecting previously unselected package fonts-urw-base35. 80s Preparing to unpack .../07-fonts-urw-base35_20200910-8_all.deb ... 80s Unpacking fonts-urw-base35 (20200910-8) ... 80s Selecting previously unselected package fontconfig-config. 80s Preparing to unpack .../08-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 80s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 80s Selecting previously unselected package libblas3:amd64. 80s Preparing to unpack .../09-libblas3_3.12.0-3build2_amd64.deb ... 80s Unpacking libblas3:amd64 (3.12.0-3build2) ... 80s Selecting previously unselected package libfontconfig1:amd64. 80s Preparing to unpack .../10-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 80s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 80s Selecting previously unselected package libpixman-1-0:amd64. 80s Preparing to unpack .../11-libpixman-1-0_0.42.2-1build1_amd64.deb ... 80s Unpacking libpixman-1-0:amd64 (0.42.2-1build1) ... 80s Selecting previously unselected package libxcb-render0:amd64. 80s Preparing to unpack .../12-libxcb-render0_1.17.0-2_amd64.deb ... 80s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 80s Selecting previously unselected package libxcb-shm0:amd64. 80s Preparing to unpack .../13-libxcb-shm0_1.17.0-2_amd64.deb ... 80s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 80s Selecting previously unselected package libxrender1:amd64. 80s Preparing to unpack .../14-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 80s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 80s Selecting previously unselected package libcairo2:amd64. 80s Preparing to unpack .../15-libcairo2_1.18.2-2_amd64.deb ... 80s Unpacking libcairo2:amd64 (1.18.2-2) ... 80s Selecting previously unselected package libdeflate0:amd64. 80s Preparing to unpack .../16-libdeflate0_1.21-1_amd64.deb ... 80s Unpacking libdeflate0:amd64 (1.21-1) ... 80s Selecting previously unselected package libgfortran5:amd64. 80s Preparing to unpack .../17-libgfortran5_14.2.0-7ubuntu1_amd64.deb ... 80s Unpacking libgfortran5:amd64 (14.2.0-7ubuntu1) ... 80s Selecting previously unselected package libgomp1:amd64. 80s Preparing to unpack .../18-libgomp1_14.2.0-7ubuntu1_amd64.deb ... 80s Unpacking libgomp1:amd64 (14.2.0-7ubuntu1) ... 80s Selecting previously unselected package libgraphite2-3:amd64. 80s Preparing to unpack .../19-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 80s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 80s Selecting previously unselected package libharfbuzz0b:amd64. 80s Preparing to unpack .../20-libharfbuzz0b_9.0.0-1_amd64.deb ... 80s Unpacking libharfbuzz0b:amd64 (9.0.0-1) ... 80s Selecting previously unselected package libhtscodecs2:amd64. 80s Preparing to unpack .../21-libhtscodecs2_1.6.0-1build1_amd64.deb ... 80s Unpacking libhtscodecs2:amd64 (1.6.0-1build1) ... 80s Selecting previously unselected package libimagequant0:amd64. 80s Preparing to unpack .../22-libimagequant0_2.18.0-1build1_amd64.deb ... 80s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 80s Selecting previously unselected package libjpeg-turbo8:amd64. 80s Preparing to unpack .../23-libjpeg-turbo8_2.1.5-2ubuntu2_amd64.deb ... 80s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 80s Selecting previously unselected package libjpeg8:amd64. 81s Preparing to unpack .../24-libjpeg8_8c-2ubuntu11_amd64.deb ... 81s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 81s Selecting previously unselected package liblapack3:amd64. 81s Preparing to unpack .../25-liblapack3_3.12.0-3build2_amd64.deb ... 81s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 81s Selecting previously unselected package liblcms2-2:amd64. 81s Preparing to unpack .../26-liblcms2-2_2.14-2build1_amd64.deb ... 81s Unpacking liblcms2-2:amd64 (2.14-2build1) ... 81s Selecting previously unselected package liblerc4:amd64. 81s Preparing to unpack .../27-liblerc4_4.0.0+ds-4ubuntu2_amd64.deb ... 81s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu2) ... 81s Selecting previously unselected package libraqm0:amd64. 81s Preparing to unpack .../28-libraqm0_0.10.1-1build1_amd64.deb ... 81s Unpacking libraqm0:amd64 (0.10.1-1build1) ... 81s Selecting previously unselected package libsharpyuv0:amd64. 81s Preparing to unpack .../29-libsharpyuv0_1.4.0-0.1_amd64.deb ... 81s Unpacking libsharpyuv0:amd64 (1.4.0-0.1) ... 81s Selecting previously unselected package libjbig0:amd64. 81s Preparing to unpack .../30-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 81s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 81s Selecting previously unselected package libwebp7:amd64. 81s Preparing to unpack .../31-libwebp7_1.4.0-0.1_amd64.deb ... 81s Unpacking libwebp7:amd64 (1.4.0-0.1) ... 81s Selecting previously unselected package libtiff6:amd64. 81s Preparing to unpack .../32-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 81s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 81s Selecting previously unselected package libwebpdemux2:amd64. 81s Preparing to unpack .../33-libwebpdemux2_1.4.0-0.1_amd64.deb ... 81s Unpacking libwebpdemux2:amd64 (1.4.0-0.1) ... 81s Selecting previously unselected package libwebpmux3:amd64. 81s Preparing to unpack .../34-libwebpmux3_1.4.0-0.1_amd64.deb ... 81s Unpacking libwebpmux3:amd64 (1.4.0-0.1) ... 81s Selecting previously unselected package python-pyfaidx-examples. 81s Preparing to unpack .../35-python-pyfaidx-examples_0.8.1.2-1_all.deb ... 81s Unpacking python-pyfaidx-examples (0.8.1.2-1) ... 81s Selecting previously unselected package python3-all. 81s Preparing to unpack .../36-python3-all_3.12.6-0ubuntu1_amd64.deb ... 81s Unpacking python3-all (3.12.6-0ubuntu1) ... 81s Selecting previously unselected package python3-numpy. 81s Preparing to unpack .../37-python3-numpy_1%3a1.26.4+ds-11build1_amd64.deb ... 81s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 81s Selecting previously unselected package libopenjp2-7:amd64. 81s Preparing to unpack .../38-libopenjp2-7_2.5.0-2ubuntu1_amd64.deb ... 81s Unpacking libopenjp2-7:amd64 (2.5.0-2ubuntu1) ... 81s Selecting previously unselected package python3-pil:amd64. 81s Preparing to unpack .../39-python3-pil_10.4.0-1ubuntu1_amd64.deb ... 81s Unpacking python3-pil:amd64 (10.4.0-1ubuntu1) ... 81s Selecting previously unselected package python3-cairo. 81s Preparing to unpack .../40-python3-cairo_1.26.1-2_amd64.deb ... 81s Unpacking python3-cairo (1.26.1-2) ... 81s Selecting previously unselected package python3-freetype. 81s Preparing to unpack .../41-python3-freetype_2.4.0-2_all.deb ... 81s Unpacking python3-freetype (2.4.0-2) ... 81s Selecting previously unselected package python3-rlpycairo. 81s Preparing to unpack .../42-python3-rlpycairo_0.3.0-3_all.deb ... 81s Unpacking python3-rlpycairo (0.3.0-3) ... 81s Selecting previously unselected package python3-reportlab. 81s Preparing to unpack .../43-python3-reportlab_4.2.2-1_all.deb ... 81s Unpacking python3-reportlab (4.2.2-1) ... 81s Selecting previously unselected package xml-core. 81s Preparing to unpack .../44-xml-core_0.19_all.deb ... 81s Unpacking xml-core (0.19) ... 81s Selecting previously unselected package w3c-sgml-lib. 81s Preparing to unpack .../45-w3c-sgml-lib_1.3-3_all.deb ... 81s Unpacking w3c-sgml-lib (1.3-3) ... 81s Selecting previously unselected package python3-biopython. 81s Preparing to unpack .../46-python3-biopython_1.83+dfsg1-3_amd64.deb ... 81s Unpacking python3-biopython (1.83+dfsg1-3) ... 82s Selecting previously unselected package python3-importlib-metadata. 82s Preparing to unpack .../47-python3-importlib-metadata_8.2.0-2_all.deb ... 82s Unpacking python3-importlib-metadata (8.2.0-2) ... 82s Selecting previously unselected package python3-iniconfig. 82s Preparing to unpack .../48-python3-iniconfig_1.1.1-2_all.deb ... 82s Unpacking python3-iniconfig (1.1.1-2) ... 82s Selecting previously unselected package python3-packaging. 82s Preparing to unpack .../49-python3-packaging_24.1-1_all.deb ... 82s Unpacking python3-packaging (24.1-1) ... 82s Selecting previously unselected package python3-pluggy. 82s Preparing to unpack .../50-python3-pluggy_1.5.0-1_all.deb ... 82s Unpacking python3-pluggy (1.5.0-1) ... 82s Selecting previously unselected package python3-pyfaidx. 82s Preparing to unpack .../51-python3-pyfaidx_0.8.1.2-1_all.deb ... 82s Unpacking python3-pyfaidx (0.8.1.2-1) ... 82s Selecting previously unselected package python3-pytest. 82s Preparing to unpack .../52-python3-pytest_8.3.2-1_all.deb ... 82s Unpacking python3-pytest (8.3.2-1) ... 82s Selecting previously unselected package tabix. 82s Preparing to unpack .../53-tabix_1.20+ds-2_amd64.deb ... 82s Unpacking tabix (1.20+ds-2) ... 82s Selecting previously unselected package autopkgtest-satdep. 82s Preparing to unpack .../54-1-autopkgtest-satdep.deb ... 82s Unpacking autopkgtest-satdep (0) ... 82s Setting up libhtscodecs2:amd64 (1.6.0-1build1) ... 82s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 82s Setting up liblcms2-2:amd64 (2.14-2build1) ... 82s Setting up python3-iniconfig (1.1.1-2) ... 82s Setting up libpixman-1-0:amd64 (0.42.2-1build1) ... 82s Setting up libsharpyuv0:amd64 (1.4.0-0.1) ... 82s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu2) ... 82s Setting up python3-importlib-metadata (8.2.0-2) ... 82s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 82s Setting up python-pyfaidx-examples (0.8.1.2-1) ... 82s Setting up libxcb-render0:amd64 (1.17.0-2) ... 82s Setting up x11-common (1:7.7+23ubuntu3) ... 82s Setting up libdeflate0:amd64 (1.21-1) ... 82s Setting up python3-all (3.12.6-0ubuntu1) ... 82s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 82s Setting up libgomp1:amd64 (14.2.0-7ubuntu1) ... 82s Setting up python3-freetype (2.4.0-2) ... 83s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 83s Setting up libfontenc1:amd64 (1:1.1.8-1build1) ... 83s Setting up libblas3:amd64 (3.12.0-3build2) ... 83s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 83s Setting up python3-packaging (24.1-1) ... 83s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 83s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 83s Setting up fonts-dejavu-mono (2.37-8) ... 83s Setting up fonts-dejavu-core (2.37-8) ... 83s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 83s Setting up libgfortran5:amd64 (14.2.0-7ubuntu1) ... 83s Setting up python3-pluggy (1.5.0-1) ... 83s Setting up libwebp7:amd64 (1.4.0-0.1) ... 83s Setting up libopenjp2-7:amd64 (2.5.0-2ubuntu1) ... 83s Setting up libharfbuzz0b:amd64 (9.0.0-1) ... 83s Setting up sgml-base (1.31) ... 83s Setting up libwebpmux3:amd64 (1.4.0-0.1) ... 83s Setting up tabix (1.20+ds-2) ... 83s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 83s Setting up python3-pyfaidx (0.8.1.2-1) ... 83s Setting up liblapack3:amd64 (3.12.0-3build2) ... 83s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 83s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 83s Setting up python3-pytest (8.3.2-1) ... 84s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... 84s Setting up xfonts-utils (1:7.7+7) ... 84s Setting up libraqm0:amd64 (0.10.1-1build1) ... 84s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 85s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 85s Setting up xml-core (0.19) ... 85s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 85s Setting up fonts-urw-base35 (20200910-8) ... 86s Setting up libcairo2:amd64 (1.18.2-2) ... 86s Setting up python3-pil:amd64 (10.4.0-1ubuntu1) ... 86s Setting up python3-cairo (1.26.1-2) ... 86s Setting up python3-rlpycairo (0.3.0-3) ... 86s Setting up python3-reportlab (4.2.2-1) ... 87s Processing triggers for libc-bin (2.40-1ubuntu3) ... 87s Processing triggers for man-db (2.12.1-3) ... 88s Processing triggers for sgml-base (1.31) ... 88s Setting up w3c-sgml-lib (1.3-3) ... 114s Setting up python3-biopython (1.83+dfsg1-3) ... 115s Setting up autopkgtest-satdep (0) ... 118s (Reading database ... 78766 files and directories currently installed.) 118s Removing autopkgtest-satdep (0) ... 118s autopkgtest [14:07:49]: test run-unit-test: [----------------------- 118s Testing with python3.12 in /tmp/autopkgtest.YNx2So/build.x8o/src: 118s ============================= test session starts ============================== 118s platform linux -- Python 3.12.7, pytest-8.3.2, pluggy-1.5.0 -- /usr/bin/python3.12 118s cachedir: .pytest_cache 118s rootdir: /tmp/autopkgtest.YNx2So/build.x8o/src 118s configfile: pyproject.toml 118s plugins: typeguard-4.3.0 118s collecting ... collected 136 items 118s 118s tests/test_FastaRecord.py::test_sequence_uppercase PASSED [ 0%] 118s tests/test_FastaRecord.py::test_long_names PASSED [ 1%] 118s tests/test_FastaRecord.py::test_issue_62 PASSED [ 2%] 118s tests/test_FastaRecord.py::test_unpadded_length PASSED [ 2%] 118s tests/test_FastaRecord.py::test_numpy_array PASSED [ 3%] 118s tests/test_FastaRecord_iter.py::test_fetch_whole_fasta PASSED [ 4%] 118s tests/test_FastaRecord_iter.py::test_line_len PASSED [ 5%] 118s tests/test_FastaRecord_iter.py::test_reverse_iter PASSED [ 5%] 118s tests/test_FastaVariant.py::test_fetch_variant SKIPPED (pysam not in...) [ 6%] 118s tests/test_FastaVariant.py::test_fetch_hom_variant SKIPPED (pysam no...) [ 7%] 118s tests/test_FastaVariant.py::test_fetch_het_variant SKIPPED (pysam no...) [ 8%] 118s tests/test_FastaVariant.py::test_fetch_chr_not_in_vcf SKIPPED (pysam...) [ 8%] 118s tests/test_FastaVariant.py::test_all_pos SKIPPED (pysam not installed.) [ 9%] 118s tests/test_FastaVariant.py::test_all_diff SKIPPED (pysam not installed.) [ 10%] 118s tests/test_Fasta_bgzip.py::test_build_issue_126 XFAIL [ 11%] 118s tests/test_Fasta_bgzip.py::test_integer_slice PASSED [ 11%] 118s tests/test_Fasta_bgzip.py::test_integer_index PASSED [ 12%] 118s tests/test_Fasta_bgzip.py::test_fetch_whole_fasta PASSED [ 13%] 118s tests/test_Fasta_bgzip.py::test_line_len PASSED [ 13%] 118s tests/test_Fasta_bgzip.py::test_mutable_bgzf PASSED [ 14%] 118s tests/test_Fasta_bgzip.py::test_long_names XFAIL [ 15%] 118s tests/test_Fasta_bgzip.py::test_fetch_whole_entry PASSED [ 16%] 118s tests/test_Fasta_bgzip.py::test_fetch_middle PASSED [ 16%] 118s tests/test_Fasta_bgzip.py::test_fetch_end PASSED [ 17%] 118s tests/test_Fasta_bgzip.py::test_fetch_border PASSED [ 18%] 118s tests/test_Fasta_bgzip.py::test_rev PASSED [ 19%] 118s tests/test_Fasta_bgzip.py::test_fetch_past_bounds PASSED [ 19%] 118s tests/test_Fasta_bgzip.py::test_fetch_negative PASSED [ 20%] 118s tests/test_Fasta_bgzip.py::test_fetch_reversed_coordinates PASSED [ 21%] 118s tests/test_Fasta_bgzip.py::test_fetch_keyerror PASSED [ 22%] 118s tests/test_Fasta_bgzip.py::test_blank_string PASSED [ 22%] 118s tests/test_Fasta_bgzip.py::test_slice_from_beginning PASSED [ 23%] 118s tests/test_Fasta_bgzip.py::test_slice_from_end PASSED [ 24%] 118s tests/test_Fasta_bgzip.py::test_issue_74_start PASSED [ 25%] 118s tests/test_Fasta_bgzip.py::test_issue_74_consistency PASSED [ 25%] 118s tests/test_Fasta_bgzip.py::test_issue_74_end_faidx PASSED [ 26%] 118s tests/test_Fasta_bgzip.py::test_issue_74_end_fasta PASSED [ 27%] 118s tests/test_Fasta_bgzip.py::test_issue_79_fix PASSED [ 27%] 118s tests/test_Fasta_bgzip.py::test_issue_79_fix_negate PASSED [ 28%] 118s tests/test_Fasta_bgzip.py::test_issue_79_fix_one_based_false PASSED [ 29%] 118s tests/test_Fasta_bgzip.py::test_issue_79_fix_one_based_false_negate PASSED [ 30%] 118s tests/test_Fasta_bgzip.py::test_fetch_border_padded PASSED [ 30%] 119s tests/test_Fasta_integer_index.py::test_integer_slice PASSED [ 31%] 119s tests/test_Fasta_integer_index.py::test_integer_index PASSED [ 32%] 119s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_reads PASSED [ 33%] 119s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_reads_and_writes PASSED [ 33%] 119s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_writes PASSED [ 34%] 119s tests/test_Path.py::test_Faidx PASSED [ 35%] 119s tests/test_Path.py::test_Fasta PASSED [ 36%] 119s tests/test_bio_seqio.py::test_fetch_whole_entry PASSED [ 36%] 119s tests/test_bio_seqio.py::test_slice_whole_entry PASSED [ 37%] 119s tests/test_bio_seqio.py::test_revcomp_whole_entry PASSED [ 38%] 119s tests/test_faidx.py::test_short_line_lengths PASSED [ 38%] 119s tests/test_faidx.py::test_fetch_whole_file PASSED [ 39%] 119s tests/test_faidx.py::test_split_entry PASSED [ 40%] 119s tests/test_faidx.py::test_fetch_error PASSED [ 41%] 119s tests/test_faidx.py::test_key_warning PASSED [ 41%] 119s tests/test_faidx.py::test_auto_strand PASSED [ 42%] 119s tests/test_faidx.py::test_regexp PASSED [ 43%] 119s tests/test_faidx.py::test_not_regexp PASSED [ 44%] 119s tests/test_faidx.py::test_not_regexp_multi PASSED [ 44%] 119s tests/test_feature_bounds_check.py::test_index_zero_length PASSED [ 45%] 119s tests/test_feature_bounds_check.py::test_fetch_zero_length PASSED [ 46%] 119s tests/test_feature_bounds_check.py::test_as_raw_zero_length_subsequence PASSED [ 47%] 119s tests/test_feature_bounds_check.py::test_zero_length_subsequence PASSED [ 47%] 119s tests/test_feature_bounds_check.py::test_fetch_whole_entry PASSED [ 48%] 119s tests/test_feature_bounds_check.py::test_fetch_middle PASSED [ 49%] 119s tests/test_feature_bounds_check.py::test_fetch_end PASSED [ 50%] 119s tests/test_feature_bounds_check.py::test_fetch_border PASSED [ 50%] 119s tests/test_feature_bounds_check.py::test_rev PASSED [ 51%] 119s tests/test_feature_bounds_check.py::test_fetch_past_bounds PASSED [ 52%] 119s tests/test_feature_bounds_check.py::test_fetch_negative PASSED [ 52%] 119s tests/test_feature_bounds_check.py::test_fetch_reversed_coordinates PASSED [ 53%] 119s tests/test_feature_bounds_check.py::test_fetch_keyerror PASSED [ 54%] 119s tests/test_feature_bounds_check.py::test_blank_string PASSED [ 55%] 119s tests/test_feature_bounds_check.py::test_slice_from_beginning PASSED [ 55%] 119s tests/test_feature_bounds_check.py::test_slice_from_end PASSED [ 56%] 119s tests/test_feature_bounds_check.py::test_issue_74_start PASSED [ 57%] 119s tests/test_feature_bounds_check.py::test_issue_74_consistency PASSED [ 58%] 119s tests/test_feature_bounds_check.py::test_issue_74_end_faidx PASSED [ 58%] 119s tests/test_feature_bounds_check.py::test_issue_74_end_fasta PASSED [ 59%] 119s tests/test_feature_bounds_check.py::test_issue_79_fix PASSED [ 60%] 119s tests/test_feature_bounds_check.py::test_issue_79_fix_negate PASSED [ 61%] 119s tests/test_feature_bounds_check.py::test_issue_79_fix_one_based_false PASSED [ 61%] 119s tests/test_feature_bounds_check.py::test_issue_79_fix_one_based_false_negate PASSED [ 62%] 119s tests/test_feature_default_seq.py::test_fetch_border_padded PASSED [ 63%] 119s tests/test_feature_indexing.py::test_version_issue_206 PASSED [ 63%] 119s tests/test_feature_indexing.py::test_build PASSED [ 64%] 119s tests/test_feature_indexing.py::test_build_issue_141 PASSED [ 65%] 119s tests/test_feature_indexing.py::test_build_issue_111 PASSED [ 66%] 119s tests/test_feature_indexing.py::test_order PASSED [ 66%] 122s tests/test_feature_indexing.py::test_valgrind_short_lines PASSED [ 67%] 125s tests/test_feature_indexing.py::test_valgrind_long_lines PASSED [ 68%] 128s tests/test_feature_indexing.py::test_valgrind_blank_lines PASSED [ 69%] 130s tests/test_feature_indexing.py::test_reindex_on_modification PASSED [ 69%] 130s tests/test_feature_indexing.py::test_build_issue_83 PASSED [ 70%] 130s tests/test_feature_indexing.py::test_build_issue_96_fail_build_faidx PASSED [ 71%] 130s tests/test_feature_indexing.py::test_build_issue_96_fail_read_malformed_index_duplicate_key PASSED [ 72%] 130s tests/test_feature_indexing.py::test_read_back_index PASSED [ 72%] 130s tests/test_feature_indexing.py::test_issue_134_no_build_index PASSED [ 73%] 130s tests/test_feature_indexing.py::test_issue_144_no_defline PASSED [ 74%] 130s tests/test_feature_key_function.py::test_keys PASSED [ 75%] 130s tests/test_feature_key_function.py::test_key_function_by_dictionary_get_key PASSED [ 75%] 130s tests/test_feature_key_function.py::test_key_function_by_fetch PASSED [ 76%] 130s tests/test_feature_key_function.py::test_duplicated_keys PASSED [ 77%] 130s tests/test_feature_key_function.py::test_duplicated_keys_shortest PASSED [ 77%] 130s tests/test_feature_key_function.py::test_duplicated_keys_longest PASSED [ 78%] 130s tests/test_feature_read_ahead_buffer.py::test_buffer_false PASSED [ 79%] 130s tests/test_feature_read_ahead_buffer.py::test_buffer_true PASSED [ 80%] 130s tests/test_feature_read_ahead_buffer.py::test_buffer_exceed PASSED [ 80%] 130s tests/test_feature_read_ahead_buffer.py::test_bounds_error PASSED [ 81%] 130s tests/test_feature_read_ahead_buffer.py::test_buffer_value PASSED [ 82%] 130s tests/test_feature_sequence_as_raw.py::test_as_raw_false PASSED [ 83%] 130s tests/test_feature_sequence_as_raw.py::test_as_raw_true PASSED [ 83%] 130s tests/test_feature_sequence_as_raw.py::test_as_raw_false_error PASSED [ 84%] 130s tests/test_feature_sequence_as_raw.py::test_as_raw_true_error PASSED [ 85%] 130s tests/test_feature_sequence_as_raw.py::test_as_raw_type_when_blen_lt_0 PASSED [ 86%] 130s tests/test_feature_spliced_seq.py::test_split_seq PASSED [ 86%] 130s tests/test_feature_spliced_seq.py::test_get_seq_rc PASSED [ 87%] 130s tests/test_feature_split_char.py::test_keys PASSED [ 88%] 130s tests/test_feature_split_char.py::test_key_function_by_dictionary_get_key PASSED [ 88%] 130s tests/test_feature_split_char.py::test_key_function_by_fetch PASSED [ 89%] 130s tests/test_feature_split_char.py::test_stop PASSED [ 90%] 130s tests/test_fsspec.py::test_fsspec_fetch_whole_file SKIPPED (uncondit...) [ 91%] 130s tests/test_fsspec.py::test_fsspec_default_index SKIPPED (uncondition...) [ 91%] 130s tests/test_fsspec.py::test_fsspec_local_index SKIPPED (unconditional...) [ 92%] 130s tests/test_fsspec.py::test_fsspec_remote_index SKIPPED (unconditiona...) [ 93%] 130s tests/test_sequence_class.py::test_negate PASSED [ 94%] 130s tests/test_sequence_class.py::test_negate_metadata PASSED [ 94%] 130s tests/test_sequence_class.py::test_seq_invalid PASSED [ 95%] 130s tests/test_sequence_class.py::test_integer_index PASSED [ 96%] 130s tests/test_sequence_class.py::test_slice_index PASSED [ 97%] 130s tests/test_sequence_class.py::test_comp_invalid PASSED [ 97%] 130s tests/test_sequence_class.py::test_check_coordinates PASSED [ 98%] 130s tests/test_sequence_class.py::test_comp_valid PASSED [ 99%] 130s tests/test_sequence_class.py::test_comp_empty PASSED [100%] 130s 130s ================= 124 passed, 10 skipped, 2 xfailed in 12.22s ================== 131s autopkgtest [14:08:02]: test run-unit-test: -----------------------] 131s autopkgtest [14:08:02]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 131s run-unit-test PASS 131s autopkgtest [14:08:02]: test autodep8-python3: preparing testbed 199s autopkgtest [14:09:10]: testbed dpkg architecture: amd64 199s autopkgtest [14:09:10]: testbed apt version: 2.9.8 199s autopkgtest [14:09:10]: @@@@@@@@@@@@@@@@@@@@ test bed setup 200s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 200s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [31.2 kB] 200s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [2268 kB] 200s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 200s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [177 kB] 200s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [238 kB] 200s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [165 kB] 200s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 200s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [833 kB] 200s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [1715 kB] 200s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [18.1 kB] 200s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [58.6 kB] 200s Fetched 5618 kB in 1s (9124 kB/s) 201s Reading package lists... 202s Reading package lists... 202s Building dependency tree... 202s Reading state information... 203s Calculating upgrade... 203s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 203s Reading package lists... 203s Building dependency tree... 203s Reading state information... 204s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 204s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 204s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 204s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 204s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 205s Reading package lists... 205s Reading package lists... 205s Building dependency tree... 205s Reading state information... 206s Calculating upgrade... 206s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 206s Reading package lists... 206s Building dependency tree... 206s Reading state information... 207s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 208s Reading package lists... 208s Building dependency tree... 208s Reading state information... 208s Starting pkgProblemResolver with broken count: 0 208s Starting 2 pkgProblemResolver with broken count: 0 208s Done 208s The following additional packages will be installed: 208s python3-all python3-importlib-metadata python3-packaging python3-pyfaidx 208s Recommended packages: 208s python3-biopython 209s The following NEW packages will be installed: 209s autopkgtest-satdep python3-all python3-importlib-metadata python3-packaging 209s python3-pyfaidx 209s 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. 209s Need to get 92.1 kB/92.8 kB of archives. 209s After this operation, 410 kB of additional disk space will be used. 209s Get:1 /tmp/autopkgtest.YNx2So/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [720 B] 209s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.12.6-0ubuntu1 [886 B] 209s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-importlib-metadata all 8.2.0-2 [20.3 kB] 209s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 209s Get:5 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyfaidx all 0.8.1.2-1 [29.6 kB] 209s Fetched 92.1 kB in 0s (2941 kB/s) 209s Selecting previously unselected package python3-all. 209s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75323 files and directories currently installed.) 209s Preparing to unpack .../python3-all_3.12.6-0ubuntu1_amd64.deb ... 209s Unpacking python3-all (3.12.6-0ubuntu1) ... 209s Selecting previously unselected package python3-importlib-metadata. 209s Preparing to unpack .../python3-importlib-metadata_8.2.0-2_all.deb ... 209s Unpacking python3-importlib-metadata (8.2.0-2) ... 209s Selecting previously unselected package python3-packaging. 209s Preparing to unpack .../python3-packaging_24.1-1_all.deb ... 209s Unpacking python3-packaging (24.1-1) ... 209s Selecting previously unselected package python3-pyfaidx. 209s Preparing to unpack .../python3-pyfaidx_0.8.1.2-1_all.deb ... 209s Unpacking python3-pyfaidx (0.8.1.2-1) ... 209s Selecting previously unselected package autopkgtest-satdep. 209s Preparing to unpack .../2-autopkgtest-satdep.deb ... 209s Unpacking autopkgtest-satdep (0) ... 209s Setting up python3-importlib-metadata (8.2.0-2) ... 210s Setting up python3-all (3.12.6-0ubuntu1) ... 210s Setting up python3-packaging (24.1-1) ... 210s Setting up python3-pyfaidx (0.8.1.2-1) ... 210s Setting up autopkgtest-satdep (0) ... 210s Processing triggers for man-db (2.12.1-3) ... 213s (Reading database ... 75384 files and directories currently installed.) 213s Removing autopkgtest-satdep (0) ... 213s autopkgtest [14:09:24]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import pyfaidx; print(pyfaidx)" ; done 213s autopkgtest [14:09:24]: test autodep8-python3: [----------------------- 213s Testing with python3.12: 213s 214s autopkgtest [14:09:25]: test autodep8-python3: -----------------------] 214s autopkgtest [14:09:25]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 214s autodep8-python3 PASS (superficial) 214s autopkgtest [14:09:25]: @@@@@@@@@@@@@@@@@@@@ summary 214s run-unit-test PASS 214s autodep8-python3 PASS (superficial) 225s nova [W] Skipping flock for amd64 225s Creating nova instance adt-plucky-amd64-python-pyfaidx-20241103-140551-juju-7f2275-prod-proposed-migration-environment-2-1380cbf5-c8b6-47d7-afa0-c98e416dfef8 from image adt/ubuntu-plucky-amd64-server-20241103.img (UUID 35ab818c-a1b8-49b0-b1ec-61e6c5b42b5f)... 225s nova [W] Skipping flock for amd64 225s Creating nova instance adt-plucky-amd64-python-pyfaidx-20241103-140551-juju-7f2275-prod-proposed-migration-environment-2-1380cbf5-c8b6-47d7-afa0-c98e416dfef8 from image adt/ubuntu-plucky-amd64-server-20241103.img (UUID 35ab818c-a1b8-49b0-b1ec-61e6c5b42b5f)...