0s autopkgtest [13:16:20]: starting date and time: 2024-11-14 13:16:20+0000 0s autopkgtest [13:16:20]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [13:16:20]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.e4_2ch0w/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-prodigy --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-2.secgroup --name adt-plucky-amd64-python-prodigy-20241114-131620-juju-7f2275-prod-proposed-migration-environment-15-1d1d2835-492e-478c-94ae-f683f67bdbd2 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 51s autopkgtest [13:17:11]: testbed dpkg architecture: amd64 51s autopkgtest [13:17:11]: testbed apt version: 2.9.8 51s autopkgtest [13:17:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup 52s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 52s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [983 kB] 52s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 52s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 52s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [105 kB] 52s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [79.9 kB] 52s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [138 kB] 53s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 53s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [749 kB] 53s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [291 kB] 53s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [1084 B] 53s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9252 B] 53s Fetched 2484 kB in 1s (2962 kB/s) 53s Reading package lists... 55s Reading package lists... 55s Building dependency tree... 55s Reading state information... 56s Calculating upgrade... 56s The following NEW packages will be installed: 56s python3.13-gdbm 56s The following packages will be upgraded: 56s libpython3-stdlib pastebinit python3 python3-gdbm python3-minimal 56s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 56s Need to get 116 kB of archives. 56s After this operation, 100 kB of additional disk space will be used. 56s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 56s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 56s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 56s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 56s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 56s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 pastebinit all 1.7.1-1 [14.9 kB] 56s Fetched 116 kB in 0s (345 kB/s) 57s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 57s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 57s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 57s Setting up python3-minimal (3.12.7-1) ... 57s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 57s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 57s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 57s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 57s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 57s Selecting previously unselected package python3.13-gdbm. 57s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 57s Unpacking python3.13-gdbm (3.13.0-2) ... 57s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 57s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 57s Preparing to unpack .../pastebinit_1.7.1-1_all.deb ... 57s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 57s Setting up python3.13-gdbm (3.13.0-2) ... 57s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 57s Setting up python3 (3.12.7-1) ... 57s Setting up python3-gdbm:amd64 (3.12.7-1) ... 57s Setting up pastebinit (1.7.1-1) ... 57s Processing triggers for man-db (2.12.1-3) ... 58s Reading package lists... 58s Building dependency tree... 58s Reading state information... 58s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 59s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 59s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 59s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 59s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 60s Reading package lists...Reading package lists... 60s Building dependency tree... 60s 60s Reading state information... 60s Calculating upgrade... 61s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 61s Reading package lists... 61s Building dependency tree... 61s Reading state information... 61s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 64s autopkgtest [13:17:24]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 64s autopkgtest [13:17:24]: @@@@@@@@@@@@@@@@@@@@ apt-source python-prodigy 66s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-prodigy 2.2.3-1 (dsc) [2228 B] 66s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-prodigy 2.2.3-1 (tar) [5709 kB] 66s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-prodigy 2.2.3-1 (diff) [1956 B] 66s gpgv: Signature made Mon Oct 7 11:27:29 2024 UTC 66s gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 66s gpgv: issuer "merkys@debian.org" 66s gpgv: Can't check signature: No public key 66s dpkg-source: warning: cannot verify inline signature for ./python-prodigy_2.2.3-1.dsc: no acceptable signature found 66s autopkgtest [13:17:26]: testing package python-prodigy version 2.2.3-1 67s autopkgtest [13:17:27]: build not needed 67s autopkgtest [13:17:27]: test pybuild-autopkgtest: preparing testbed 69s Reading package lists... 69s Building dependency tree... 69s Reading state information... 70s Starting pkgProblemResolver with broken count: 0 70s Starting 2 pkgProblemResolver with broken count: 0 70s Done 70s The following additional packages will be installed: 70s autoconf automake autopoint autotools-dev build-essential cpp cpp-14 70s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu debhelper debugedit 70s dh-autoreconf dh-python dh-strip-nondeterminism dwz fontconfig-config 70s fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 g++ g++-14 70s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 70s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext help2man 70s intltool-debian libarchive-zip-perl libasan8 libblas3 libcairo2 libcc1-0 70s libdebhelper-perl libdeflate0 libfile-stripnondeterminism-perl 70s libfontconfig1 libfontenc1 libgcc-14-dev libgfortran5 libgomp1 70s libgraphite2-3 libharfbuzz0b libhwasan0 libimagequant0 libisl23 libitm1 70s libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 liblsan0 70s libmpc3 libopenjp2-7 libpixman-1-0 libpython3.13-minimal 70s libpython3.13-stdlib libquadmath0 libraqm0 libsharpyuv0 libstdc++-14-dev 70s libtiff6 libtool libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 70s libxcb-render0 libxcb-shm0 libxrender1 m4 po-debconf 70s pybuild-plugin-autopkgtest pybuild-plugin-pyproject python3-all 70s python3-biopython python3-build python3-cairo python3-freesasa 70s python3-freetype python3-installer python3-numpy python3-packaging 70s python3-pil python3-poetry-core python3-prodigy python3-pyproject-hooks 70s python3-reportlab python3-rlpycairo python3-toml python3-wheel python3.13 70s python3.13-minimal sgml-base w3c-sgml-lib x11-common xfonts-encodings 70s xfonts-utils xml-core 70s Suggested packages: 70s autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales 70s cpp-14-doc dh-make flit fonts-freefont-otf | fonts-freefont-ttf 70s fonts-texgyre g++-multilib g++-14-multilib gcc-14-doc gcc-multilib 70s manpages-dev flex bison gdb gcc-doc gcc-14-multilib gdb-x86-64-linux-gnu 70s gettext-doc libasprintf-dev libgettextpo-dev liblcms2-utils libstdc++-14-doc 70s libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc libmail-box-perl 70s python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 70s phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf 70s python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise 70s python3-pip python3-venv python-build-doc python-freesasa-doc 70s python-installer-doc gfortran python-numpy-doc python3-dev python3-pytest 70s python-pil-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc 70s rl-accel rl-renderpm python3.13-venv python3.13-doc binfmt-support 70s sgml-base-doc 70s Recommended packages: 70s libarchive-cpio-perl libltdl-dev libmail-sendmail-perl python-biopython-doc 70s ncbi-blast+ python3-olefile fonts-dejavu-extra 70s The following NEW packages will be installed: 70s autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential 70s cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu debhelper debugedit 70s dh-autoreconf dh-python dh-strip-nondeterminism dwz fontconfig-config 70s fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 g++ g++-14 70s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 70s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext help2man 70s intltool-debian libarchive-zip-perl libasan8 libblas3 libcairo2 libcc1-0 70s libdebhelper-perl libdeflate0 libfile-stripnondeterminism-perl 70s libfontconfig1 libfontenc1 libgcc-14-dev libgfortran5 libgomp1 70s libgraphite2-3 libharfbuzz0b libhwasan0 libimagequant0 libisl23 libitm1 70s libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 liblsan0 70s libmpc3 libopenjp2-7 libpixman-1-0 libpython3.13-minimal 70s libpython3.13-stdlib libquadmath0 libraqm0 libsharpyuv0 libstdc++-14-dev 70s libtiff6 libtool libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 70s libxcb-render0 libxcb-shm0 libxrender1 m4 po-debconf 70s pybuild-plugin-autopkgtest pybuild-plugin-pyproject python3-all 70s python3-biopython python3-build python3-cairo python3-freesasa 70s python3-freetype python3-installer python3-numpy python3-packaging 70s python3-pil python3-poetry-core python3-prodigy python3-pyproject-hooks 70s python3-reportlab python3-rlpycairo python3-toml python3-wheel python3.13 70s python3.13-minimal sgml-base w3c-sgml-lib x11-common xfonts-encodings 70s xfonts-utils xml-core 70s 0 upgraded, 105 newly installed, 0 to remove and 0 not upgraded. 70s Need to get 105 MB/105 MB of archives. 70s After this operation, 350 MB of additional disk space will be used. 70s Get:1 /tmp/autopkgtest.fKt5Wj/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [820 B] 70s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 71s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 71s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB] 71s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-4build1 [244 kB] 71s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB] 71s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB] 71s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 71s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.22.5-2 [616 kB] 71s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 71s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 71s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 72s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 72s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 72s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 72s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 72s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 72s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 72s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 72s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 72s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 72s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 72s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 72s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 72s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 72s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 72s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 72s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 72s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 72s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 72s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 72s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 72s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 72s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 72s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 72s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 72s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.4.7-7build1 [166 kB] 72s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB] 72s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 72s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 73s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 73s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-1 [46.9 kB] 73s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB] 73s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.22.5-2 [948 kB] 73s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 73s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 73s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.20ubuntu1 [893 kB] 73s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20241024 [112 kB] 73s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 73s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 73s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB] 73s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 73s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 73s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-utils amd64 1:7.7+7 [97.1 kB] 73s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB] 73s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 73s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 help2man amd64 1.49.3 [201 kB] 73s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 73s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 73s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 73s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 73s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 73s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 73s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 73s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 73s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 73s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 73s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.0.1-1 [540 kB] 73s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 73s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 73s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 73s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 73s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 73s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu2 [179 kB] 73s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 73s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 73s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 73s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 73s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 73s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 73s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 73s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 73s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-autopkgtest all 6.20241024 [1746 B] 73s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 74s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 74s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-toml all 0.10.2-1 [16.5 kB] 74s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-wheel all 0.44.0-1 [54.2 kB] 74s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-build all 1.2.2-1 [31.0 kB] 74s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 74s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-pyproject all 6.20241024 [1728 B] 74s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 74s Get:92 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 74s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 74s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu1 [184 kB] 74s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 10.4.0-1ubuntu1 [463 kB] 74s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cairo amd64 1.26.1-2 [119 kB] 74s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-freetype all 2.5.1-1 [92.3 kB] 74s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-rlpycairo all 0.3.0-3 [9130 B] 74s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-reportlab all 4.2.5-1 [1107 kB] 74s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB] 74s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB] 74s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-biopython amd64 1.84+dfsg-4 [1714 kB] 74s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-freesasa amd64 2.1.0-3build3 [160 kB] 74s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-poetry-core all 1.9.0-2build1 [203 kB] 74s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-prodigy all 2.2.3-1 [15.7 kB] 75s Fetched 105 MB in 4s (23.8 MB/s) 75s Selecting previously unselected package libpython3.13-minimal:amd64. 75s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75549 files and directories currently installed.) 75s Preparing to unpack .../000-libpython3.13-minimal_3.13.0-2_amd64.deb ... 75s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 75s Selecting previously unselected package python3.13-minimal. 75s Preparing to unpack .../001-python3.13-minimal_3.13.0-2_amd64.deb ... 75s Unpacking python3.13-minimal (3.13.0-2) ... 75s Selecting previously unselected package sgml-base. 75s Preparing to unpack .../002-sgml-base_1.31_all.deb ... 75s Unpacking sgml-base (1.31) ... 75s Selecting previously unselected package m4. 75s Preparing to unpack .../003-m4_1.4.19-4build1_amd64.deb ... 75s Unpacking m4 (1.4.19-4build1) ... 75s Selecting previously unselected package autoconf. 75s Preparing to unpack .../004-autoconf_2.72-3_all.deb ... 75s Unpacking autoconf (2.72-3) ... 75s Selecting previously unselected package autotools-dev. 75s Preparing to unpack .../005-autotools-dev_20220109.1_all.deb ... 75s Unpacking autotools-dev (20220109.1) ... 75s Selecting previously unselected package automake. 75s Preparing to unpack .../006-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 75s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 75s Selecting previously unselected package autopoint. 75s Preparing to unpack .../007-autopoint_0.22.5-2_all.deb ... 75s Unpacking autopoint (0.22.5-2) ... 75s Selecting previously unselected package libisl23:amd64. 75s Preparing to unpack .../008-libisl23_0.27-1_amd64.deb ... 75s Unpacking libisl23:amd64 (0.27-1) ... 75s Selecting previously unselected package libmpc3:amd64. 75s Preparing to unpack .../009-libmpc3_1.3.1-1build2_amd64.deb ... 75s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 75s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 75s Preparing to unpack .../010-cpp-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 75s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 75s Selecting previously unselected package cpp-14. 76s Preparing to unpack .../011-cpp-14_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package cpp-x86-64-linux-gnu. 76s Preparing to unpack .../012-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 76s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 76s Selecting previously unselected package cpp. 76s Preparing to unpack .../013-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 76s Unpacking cpp (4:14.1.0-2ubuntu1) ... 76s Selecting previously unselected package libcc1-0:amd64. 76s Preparing to unpack .../014-libcc1-0_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking libcc1-0:amd64 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package libgomp1:amd64. 76s Preparing to unpack .../015-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package libitm1:amd64. 76s Preparing to unpack .../016-libitm1_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking libitm1:amd64 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package libasan8:amd64. 76s Preparing to unpack .../017-libasan8_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking libasan8:amd64 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package liblsan0:amd64. 76s Preparing to unpack .../018-liblsan0_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking liblsan0:amd64 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package libtsan2:amd64. 76s Preparing to unpack .../019-libtsan2_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking libtsan2:amd64 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package libubsan1:amd64. 76s Preparing to unpack .../020-libubsan1_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking libubsan1:amd64 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package libhwasan0:amd64. 76s Preparing to unpack .../021-libhwasan0_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking libhwasan0:amd64 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package libquadmath0:amd64. 76s Preparing to unpack .../022-libquadmath0_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking libquadmath0:amd64 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package libgcc-14-dev:amd64. 76s Preparing to unpack .../023-libgcc-14-dev_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 76s Preparing to unpack .../024-gcc-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package gcc-14. 76s Preparing to unpack .../025-gcc-14_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package gcc-x86-64-linux-gnu. 76s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 76s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 76s Selecting previously unselected package gcc. 76s Preparing to unpack .../027-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 76s Unpacking gcc (4:14.1.0-2ubuntu1) ... 76s Selecting previously unselected package libstdc++-14-dev:amd64. 76s Preparing to unpack .../028-libstdc++-14-dev_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 77s Selecting previously unselected package g++-14-x86-64-linux-gnu. 77s Preparing to unpack .../029-g++-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 77s Unpacking g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 77s Selecting previously unselected package g++-14. 77s Preparing to unpack .../030-g++-14_14.2.0-8ubuntu1_amd64.deb ... 77s Unpacking g++-14 (14.2.0-8ubuntu1) ... 77s Selecting previously unselected package g++-x86-64-linux-gnu. 77s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 77s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 77s Selecting previously unselected package g++. 77s Preparing to unpack .../032-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 77s Unpacking g++ (4:14.1.0-2ubuntu1) ... 77s Selecting previously unselected package build-essential. 77s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 77s Unpacking build-essential (12.10ubuntu1) ... 77s Selecting previously unselected package libdebhelper-perl. 77s Preparing to unpack .../034-libdebhelper-perl_13.20ubuntu1_all.deb ... 77s Unpacking libdebhelper-perl (13.20ubuntu1) ... 77s Selecting previously unselected package libtool. 77s Preparing to unpack .../035-libtool_2.4.7-7build1_all.deb ... 77s Unpacking libtool (2.4.7-7build1) ... 77s Selecting previously unselected package dh-autoreconf. 77s Preparing to unpack .../036-dh-autoreconf_20_all.deb ... 77s Unpacking dh-autoreconf (20) ... 77s Selecting previously unselected package libarchive-zip-perl. 77s Preparing to unpack .../037-libarchive-zip-perl_1.68-1_all.deb ... 77s Unpacking libarchive-zip-perl (1.68-1) ... 77s Selecting previously unselected package libfile-stripnondeterminism-perl. 77s Preparing to unpack .../038-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... 77s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... 77s Selecting previously unselected package dh-strip-nondeterminism. 77s Preparing to unpack .../039-dh-strip-nondeterminism_1.14.0-1_all.deb ... 77s Unpacking dh-strip-nondeterminism (1.14.0-1) ... 77s Selecting previously unselected package debugedit. 77s Preparing to unpack .../040-debugedit_1%3a5.1-1_amd64.deb ... 77s Unpacking debugedit (1:5.1-1) ... 77s Selecting previously unselected package dwz. 77s Preparing to unpack .../041-dwz_0.15-1build6_amd64.deb ... 77s Unpacking dwz (0.15-1build6) ... 77s Selecting previously unselected package gettext. 77s Preparing to unpack .../042-gettext_0.22.5-2_amd64.deb ... 77s Unpacking gettext (0.22.5-2) ... 77s Selecting previously unselected package intltool-debian. 77s Preparing to unpack .../043-intltool-debian_0.35.0+20060710.6_all.deb ... 77s Unpacking intltool-debian (0.35.0+20060710.6) ... 77s Selecting previously unselected package po-debconf. 77s Preparing to unpack .../044-po-debconf_1.0.21+nmu1_all.deb ... 77s Unpacking po-debconf (1.0.21+nmu1) ... 77s Selecting previously unselected package debhelper. 77s Preparing to unpack .../045-debhelper_13.20ubuntu1_all.deb ... 77s Unpacking debhelper (13.20ubuntu1) ... 77s Selecting previously unselected package dh-python. 77s Preparing to unpack .../046-dh-python_6.20241024_all.deb ... 77s Unpacking dh-python (6.20241024) ... 77s Selecting previously unselected package fonts-dejavu-mono. 77s Preparing to unpack .../047-fonts-dejavu-mono_2.37-8_all.deb ... 77s Unpacking fonts-dejavu-mono (2.37-8) ... 77s Selecting previously unselected package fonts-dejavu-core. 77s Preparing to unpack .../048-fonts-dejavu-core_2.37-8_all.deb ... 77s Unpacking fonts-dejavu-core (2.37-8) ... 77s Selecting previously unselected package libfontenc1:amd64. 77s Preparing to unpack .../049-libfontenc1_1%3a1.1.8-1build1_amd64.deb ... 77s Unpacking libfontenc1:amd64 (1:1.1.8-1build1) ... 77s Selecting previously unselected package x11-common. 77s Preparing to unpack .../050-x11-common_1%3a7.7+23ubuntu3_all.deb ... 77s Unpacking x11-common (1:7.7+23ubuntu3) ... 77s Selecting previously unselected package xfonts-encodings. 77s Preparing to unpack .../051-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 77s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 77s Selecting previously unselected package xfonts-utils. 77s Preparing to unpack .../052-xfonts-utils_1%3a7.7+7_amd64.deb ... 77s Unpacking xfonts-utils (1:7.7+7) ... 78s Selecting previously unselected package fonts-urw-base35. 78s Preparing to unpack .../053-fonts-urw-base35_20200910-8_all.deb ... 78s Unpacking fonts-urw-base35 (20200910-8) ... 78s Selecting previously unselected package fontconfig-config. 78s Preparing to unpack .../054-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 78s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 78s Selecting previously unselected package help2man. 78s Preparing to unpack .../055-help2man_1.49.3_amd64.deb ... 78s Unpacking help2man (1.49.3) ... 78s Selecting previously unselected package libblas3:amd64. 78s Preparing to unpack .../056-libblas3_3.12.0-3build2_amd64.deb ... 78s Unpacking libblas3:amd64 (3.12.0-3build2) ... 78s Selecting previously unselected package libfontconfig1:amd64. 78s Preparing to unpack .../057-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 78s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 78s Selecting previously unselected package libpixman-1-0:amd64. 78s Preparing to unpack .../058-libpixman-1-0_0.44.0-3_amd64.deb ... 78s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 78s Selecting previously unselected package libxcb-render0:amd64. 78s Preparing to unpack .../059-libxcb-render0_1.17.0-2_amd64.deb ... 78s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 78s Selecting previously unselected package libxcb-shm0:amd64. 78s Preparing to unpack .../060-libxcb-shm0_1.17.0-2_amd64.deb ... 78s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 78s Selecting previously unselected package libxrender1:amd64. 78s Preparing to unpack .../061-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 78s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 78s Selecting previously unselected package libcairo2:amd64. 78s Preparing to unpack .../062-libcairo2_1.18.2-2_amd64.deb ... 78s Unpacking libcairo2:amd64 (1.18.2-2) ... 78s Selecting previously unselected package libdeflate0:amd64. 78s Preparing to unpack .../063-libdeflate0_1.22-1_amd64.deb ... 78s Unpacking libdeflate0:amd64 (1.22-1) ... 78s Selecting previously unselected package libgfortran5:amd64. 78s Preparing to unpack .../064-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 78s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 78s Selecting previously unselected package libgraphite2-3:amd64. 78s Preparing to unpack .../065-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 78s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 78s Selecting previously unselected package libharfbuzz0b:amd64. 78s Preparing to unpack .../066-libharfbuzz0b_10.0.1-1_amd64.deb ... 78s Unpacking libharfbuzz0b:amd64 (10.0.1-1) ... 78s Selecting previously unselected package libimagequant0:amd64. 78s Preparing to unpack .../067-libimagequant0_2.18.0-1build1_amd64.deb ... 78s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 78s Selecting previously unselected package libjpeg-turbo8:amd64. 78s Preparing to unpack .../068-libjpeg-turbo8_2.1.5-2ubuntu2_amd64.deb ... 78s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 78s Selecting previously unselected package libjpeg8:amd64. 78s Preparing to unpack .../069-libjpeg8_8c-2ubuntu11_amd64.deb ... 78s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 78s Selecting previously unselected package liblapack3:amd64. 78s Preparing to unpack .../070-liblapack3_3.12.0-3build2_amd64.deb ... 78s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 79s Selecting previously unselected package liblcms2-2:amd64. 79s Preparing to unpack .../071-liblcms2-2_2.16-2_amd64.deb ... 79s Unpacking liblcms2-2:amd64 (2.16-2) ... 79s Selecting previously unselected package liblerc4:amd64. 79s Preparing to unpack .../072-liblerc4_4.0.0+ds-4ubuntu2_amd64.deb ... 79s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu2) ... 79s Selecting previously unselected package libpython3.13-stdlib:amd64. 79s Preparing to unpack .../073-libpython3.13-stdlib_3.13.0-2_amd64.deb ... 79s Unpacking libpython3.13-stdlib:amd64 (3.13.0-2) ... 79s Selecting previously unselected package libraqm0:amd64. 79s Preparing to unpack .../074-libraqm0_0.10.1-1build1_amd64.deb ... 79s Unpacking libraqm0:amd64 (0.10.1-1build1) ... 79s Selecting previously unselected package libsharpyuv0:amd64. 79s Preparing to unpack .../075-libsharpyuv0_1.4.0-0.1_amd64.deb ... 79s Unpacking libsharpyuv0:amd64 (1.4.0-0.1) ... 79s Selecting previously unselected package libjbig0:amd64. 79s Preparing to unpack .../076-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 79s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 79s Selecting previously unselected package libwebp7:amd64. 79s Preparing to unpack .../077-libwebp7_1.4.0-0.1_amd64.deb ... 79s Unpacking libwebp7:amd64 (1.4.0-0.1) ... 79s Selecting previously unselected package libtiff6:amd64. 79s Preparing to unpack .../078-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 79s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 79s Selecting previously unselected package libwebpdemux2:amd64. 79s Preparing to unpack .../079-libwebpdemux2_1.4.0-0.1_amd64.deb ... 79s Unpacking libwebpdemux2:amd64 (1.4.0-0.1) ... 79s Selecting previously unselected package libwebpmux3:amd64. 79s Preparing to unpack .../080-libwebpmux3_1.4.0-0.1_amd64.deb ... 79s Unpacking libwebpmux3:amd64 (1.4.0-0.1) ... 79s Selecting previously unselected package pybuild-plugin-autopkgtest. 79s Preparing to unpack .../081-pybuild-plugin-autopkgtest_6.20241024_all.deb ... 79s Unpacking pybuild-plugin-autopkgtest (6.20241024) ... 79s Selecting previously unselected package python3-packaging. 79s Preparing to unpack .../082-python3-packaging_24.1-1_all.deb ... 79s Unpacking python3-packaging (24.1-1) ... 79s Selecting previously unselected package python3-pyproject-hooks. 79s Preparing to unpack .../083-python3-pyproject-hooks_1.2.0-1_all.deb ... 79s Unpacking python3-pyproject-hooks (1.2.0-1) ... 79s Selecting previously unselected package python3-toml. 79s Preparing to unpack .../084-python3-toml_0.10.2-1_all.deb ... 79s Unpacking python3-toml (0.10.2-1) ... 79s Selecting previously unselected package python3-wheel. 79s Preparing to unpack .../085-python3-wheel_0.44.0-1_all.deb ... 79s Unpacking python3-wheel (0.44.0-1) ... 79s Selecting previously unselected package python3-build. 79s Preparing to unpack .../086-python3-build_1.2.2-1_all.deb ... 79s Unpacking python3-build (1.2.2-1) ... 79s Selecting previously unselected package python3-installer. 79s Preparing to unpack .../087-python3-installer_0.7.0+dfsg1-3_all.deb ... 79s Unpacking python3-installer (0.7.0+dfsg1-3) ... 79s Selecting previously unselected package pybuild-plugin-pyproject. 79s Preparing to unpack .../088-pybuild-plugin-pyproject_6.20241024_all.deb ... 79s Unpacking pybuild-plugin-pyproject (6.20241024) ... 79s Selecting previously unselected package python3.13. 79s Preparing to unpack .../089-python3.13_3.13.0-2_amd64.deb ... 79s Unpacking python3.13 (3.13.0-2) ... 79s Selecting previously unselected package python3-all. 79s Preparing to unpack .../090-python3-all_3.12.7-1_amd64.deb ... 79s Unpacking python3-all (3.12.7-1) ... 79s Selecting previously unselected package python3-numpy. 79s Preparing to unpack .../091-python3-numpy_1%3a1.26.4+ds-11build1_amd64.deb ... 79s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 79s Selecting previously unselected package libopenjp2-7:amd64. 79s Preparing to unpack .../092-libopenjp2-7_2.5.0-2ubuntu1_amd64.deb ... 79s Unpacking libopenjp2-7:amd64 (2.5.0-2ubuntu1) ... 79s Selecting previously unselected package python3-pil:amd64. 79s Preparing to unpack .../093-python3-pil_10.4.0-1ubuntu1_amd64.deb ... 79s Unpacking python3-pil:amd64 (10.4.0-1ubuntu1) ... 80s Selecting previously unselected package python3-cairo. 80s Preparing to unpack .../094-python3-cairo_1.26.1-2_amd64.deb ... 80s Unpacking python3-cairo (1.26.1-2) ... 80s Selecting previously unselected package python3-freetype. 80s Preparing to unpack .../095-python3-freetype_2.5.1-1_all.deb ... 80s Unpacking python3-freetype (2.5.1-1) ... 80s Selecting previously unselected package python3-rlpycairo. 80s Preparing to unpack .../096-python3-rlpycairo_0.3.0-3_all.deb ... 80s Unpacking python3-rlpycairo (0.3.0-3) ... 80s Selecting previously unselected package python3-reportlab. 80s Preparing to unpack .../097-python3-reportlab_4.2.5-1_all.deb ... 80s Unpacking python3-reportlab (4.2.5-1) ... 80s Selecting previously unselected package xml-core. 80s Preparing to unpack .../098-xml-core_0.19_all.deb ... 80s Unpacking xml-core (0.19) ... 80s Selecting previously unselected package w3c-sgml-lib. 80s Preparing to unpack .../099-w3c-sgml-lib_1.3-3_all.deb ... 80s Unpacking w3c-sgml-lib (1.3-3) ... 80s Selecting previously unselected package python3-biopython. 80s Preparing to unpack .../100-python3-biopython_1.84+dfsg-4_amd64.deb ... 80s Unpacking python3-biopython (1.84+dfsg-4) ... 80s Selecting previously unselected package python3-freesasa. 80s Preparing to unpack .../101-python3-freesasa_2.1.0-3build3_amd64.deb ... 80s Unpacking python3-freesasa (2.1.0-3build3) ... 80s Selecting previously unselected package python3-poetry-core. 80s Preparing to unpack .../102-python3-poetry-core_1.9.0-2build1_all.deb ... 80s Unpacking python3-poetry-core (1.9.0-2build1) ... 80s Selecting previously unselected package python3-prodigy. 80s Preparing to unpack .../103-python3-prodigy_2.2.3-1_all.deb ... 80s Unpacking python3-prodigy (2.2.3-1) ... 80s Selecting previously unselected package autopkgtest-satdep. 80s Preparing to unpack .../104-1-autopkgtest-satdep.deb ... 80s Unpacking autopkgtest-satdep (0) ... 80s Setting up dh-python (6.20241024) ... 80s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 80s Setting up liblcms2-2:amd64 (2.16-2) ... 80s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 80s Setting up libsharpyuv0:amd64 (1.4.0-0.1) ... 80s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu2) ... 80s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 80s Setting up libxcb-render0:amd64 (1.17.0-2) ... 80s Setting up libarchive-zip-perl (1.68-1) ... 80s Setting up libdebhelper-perl (13.20ubuntu1) ... 80s Setting up x11-common (1:7.7+23ubuntu3) ... 81s Setting up libdeflate0:amd64 (1.22-1) ... 81s Setting up m4 (1.4.19-4build1) ... 81s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 81s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 81s Setting up python3-freetype (2.5.1-1) ... 81s Setting up python3-wheel (0.44.0-1) ... 81s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 81s Setting up help2man (1.49.3) ... 81s Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... 81s Setting up python3-freesasa (2.1.0-3build3) ... 81s Setting up libfontenc1:amd64 (1:1.1.8-1build1) ... 81s Setting up autotools-dev (20220109.1) ... 81s Setting up libblas3:amd64 (3.12.0-3build2) ... 81s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 81s Setting up python3-packaging (24.1-1) ... 81s Setting up python3-pyproject-hooks (1.2.0-1) ... 81s Setting up python3-poetry-core (1.9.0-2build1) ... 82s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 82s Setting up libquadmath0:amd64 (14.2.0-8ubuntu1) ... 82s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 82s Setting up fonts-dejavu-mono (2.37-8) ... 82s Setting up libmpc3:amd64 (1.3.1-1build2) ... 82s Setting up autopoint (0.22.5-2) ... 82s Setting up fonts-dejavu-core (2.37-8) ... 82s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 82s Setting up python3-toml (0.10.2-1) ... 82s Setting up python3-installer (0.7.0+dfsg1-3) ... 82s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 82s Setting up autoconf (2.72-3) ... 82s Setting up libwebp7:amd64 (1.4.0-0.1) ... 82s Setting up libubsan1:amd64 (14.2.0-8ubuntu1) ... 82s Setting up dwz (0.15-1build6) ... 82s Setting up libhwasan0:amd64 (14.2.0-8ubuntu1) ... 82s Setting up libasan8:amd64 (14.2.0-8ubuntu1) ... 82s Setting up debugedit (1:5.1-1) ... 82s Setting up libopenjp2-7:amd64 (2.5.0-2ubuntu1) ... 82s Setting up python3.13-minimal (3.13.0-2) ... 83s Setting up libharfbuzz0b:amd64 (10.0.1-1) ... 83s Setting up sgml-base (1.31) ... 83s Setting up libtsan2:amd64 (14.2.0-8ubuntu1) ... 83s Setting up libisl23:amd64 (0.27-1) ... 83s Setting up python3-build (1.2.2-1) ... 83s Setting up libwebpmux3:amd64 (1.4.0-0.1) ... 83s Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... 83s Setting up libcc1-0:amd64 (14.2.0-8ubuntu1) ... 83s Setting up liblsan0:amd64 (14.2.0-8ubuntu1) ... 83s Setting up libitm1:amd64 (14.2.0-8ubuntu1) ... 83s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 83s Setting up automake (1:1.16.5-1.3ubuntu1) ... 83s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 83s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... 83s Setting up liblapack3:amd64 (3.12.0-3build2) ... 83s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 83s Setting up gettext (0.22.5-2) ... 83s Setting up python3.13 (3.13.0-2) ... 84s Setting up pybuild-plugin-pyproject (6.20241024) ... 84s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 84s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... 84s Setting up python3-all (3.12.7-1) ... 84s Setting up xfonts-utils (1:7.7+7) ... 84s Setting up intltool-debian (0.35.0+20060710.6) ... 84s Setting up libraqm0:amd64 (0.10.1-1build1) ... 84s Setting up cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 84s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 88s Setting up cpp-14 (14.2.0-8ubuntu1) ... 88s Setting up dh-strip-nondeterminism (1.14.0-1) ... 88s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 88s Setting up xml-core (0.19) ... 88s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 88s Setting up libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 88s Setting up libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 88s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 88s Setting up po-debconf (1.0.21+nmu1) ... 88s Setting up fonts-urw-base35 (20200910-8) ... 88s Setting up libcairo2:amd64 (1.18.2-2) ... 88s Setting up python3-pil:amd64 (10.4.0-1ubuntu1) ... 88s Setting up cpp (4:14.1.0-2ubuntu1) ... 88s Setting up gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 88s Setting up python3-cairo (1.26.1-2) ... 88s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 88s Setting up gcc-14 (14.2.0-8ubuntu1) ... 88s Setting up python3-rlpycairo (0.3.0-3) ... 88s Setting up g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 88s Setting up python3-reportlab (4.2.5-1) ... 89s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 89s Setting up g++-14 (14.2.0-8ubuntu1) ... 89s Setting up libtool (2.4.7-7build1) ... 89s Setting up gcc (4:14.1.0-2ubuntu1) ... 90s Setting up dh-autoreconf (20) ... 90s Setting up g++ (4:14.1.0-2ubuntu1) ... 90s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 90s Setting up build-essential (12.10ubuntu1) ... 90s Setting up debhelper (13.20ubuntu1) ... 90s Setting up pybuild-plugin-autopkgtest (6.20241024) ... 90s Processing triggers for libc-bin (2.40-1ubuntu3) ... 90s Processing triggers for systemd (256.5-2ubuntu4) ... 90s Processing triggers for man-db (2.12.1-3) ... 91s Processing triggers for install-info (7.1.1-1) ... 91s Processing triggers for sgml-base (1.31) ... 91s Setting up w3c-sgml-lib (1.3-3) ... 114s Setting up python3-biopython (1.84+dfsg-4) ... 116s Setting up python3-prodigy (2.2.3-1) ... 116s Setting up autopkgtest-satdep (0) ... 120s (Reading database ... 82363 files and directories currently installed.) 120s Removing autopkgtest-satdep (0) ... 121s autopkgtest [13:18:21]: test pybuild-autopkgtest: pybuild-autopkgtest 121s autopkgtest [13:18:21]: test pybuild-autopkgtest: [----------------------- 121s pybuild-autopkgtest 122s I: pybuild base:311: cd /tmp/autopkgtest.fKt5Wj/autopkgtest_tmp/build; python3.13 -m unittest discover -v 122s tests.test_prodigy (unittest.loader._FailedTest.tests.test_prodigy) ... ERROR 122s 122s ====================================================================== 122s ERROR: tests.test_prodigy (unittest.loader._FailedTest.tests.test_prodigy) 122s ---------------------------------------------------------------------- 122s ImportError: Failed to import test module: tests.test_prodigy 122s Traceback (most recent call last): 122s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 122s from . import multiarray 122s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 122s from . import overrides 122s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 122s from numpy.core._multiarray_umath import ( 122s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 122s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 122s 122s During handling of the above exception, another exception occurred: 122s 122s Traceback (most recent call last): 122s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 122s from numpy.__config__ import show as show_config 122s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 122s from numpy.core._multiarray_umath import ( 122s ...<3 lines>... 122s ) 122s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 122s raise ImportError(msg) 122s ImportError: 122s 122s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 122s 122s Importing the numpy C-extensions failed. This error can happen for 122s many reasons, often due to issues with your setup or how NumPy was 122s installed. 122s 122s We have compiled some common reasons and troubleshooting tips at: 122s 122s https://numpy.org/devdocs/user/troubleshooting-importerror.html 122s 122s Please note and check the following: 122s 122s * The Python version is: Python3.13 from "/usr/bin/python3.13" 122s * The NumPy version is: "1.26.4" 122s 122s and make sure that they are the versions you expect. 122s Please carefully study the documentation linked above for further help. 122s 122s Original error was: No module named 'numpy.core._multiarray_umath' 122s 122s 122s The above exception was the direct cause of the following exception: 122s 122s Traceback (most recent call last): 122s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 122s module = self._get_module_from_name(name) 122s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 122s __import__(name) 122s ~~~~~~~~~~^^^^^^ 122s File "/tmp/autopkgtest.fKt5Wj/autopkgtest_tmp/build/tests/test_prodigy.py", line 17, in 122s import numpy as np 122s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 122s raise ImportError(msg) from e 122s ImportError: Error importing numpy: you should not try to import numpy from 122s its source directory; please exit the numpy source tree, and relaunch 122s your python interpreter from there. 122s 122s 122s ---------------------------------------------------------------------- 122s Ran 1 test in 0.000s 122s 122s FAILED (errors=1) 122s E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /tmp/autopkgtest.fKt5Wj/autopkgtest_tmp/build; python3.13 -m unittest discover -v 122s I: pybuild base:311: cd /tmp/autopkgtest.fKt5Wj/autopkgtest_tmp/build; python3.12 -m unittest discover -v 122s test_dataset (tests.test_prodigy.ProdigyOutputTest.test_dataset) 139s Test method to compare prediction for 80 dataset cases with ... ok 139s 139s ---------------------------------------------------------------------- 139s Ran 1 test in 17.168s 139s 139s Deltas: 139s ba_val max: 1.03% 139s ba_val mean: 0.29% 139s nis_a max: 0.53% 139s nis_a mean: 0.02% 139s nis_c max: 0.44% 139s nis_c mean: 0.02% 139s OK 139s pybuild-autopkgtest: error: pybuild --autopkgtest -i python{version} -p "3.13 3.12" returned exit code 13 139s make: *** [/tmp/RBms5lriRI/run:4: pybuild-autopkgtest] Error 25 139s pybuild-autopkgtest: error: /tmp/RBms5lriRI/run pybuild-autopkgtest returned exit code 2 140s autopkgtest [13:18:40]: test pybuild-autopkgtest: -----------------------] 140s pybuild-autopkgtest FAIL non-zero exit status 25 140s autopkgtest [13:18:40]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 140s autopkgtest [13:18:40]: @@@@@@@@@@@@@@@@@@@@ summary 140s pybuild-autopkgtest FAIL non-zero exit status 25 153s nova [W] Skipping flock for amd64 153s Creating nova instance adt-plucky-amd64-python-prodigy-20241114-131620-juju-7f2275-prod-proposed-migration-environment-15-1d1d2835-492e-478c-94ae-f683f67bdbd2 from image adt/ubuntu-plucky-amd64-server-20241114.img (UUID 79d80331-8736-463c-82c6-8c9e13c0a4ca)...