0s autopkgtest [11:54:47]: starting date and time: 2024-11-15 11:54:47+0000 0s autopkgtest [11:54:47]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [11:54:47]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.54_9r5y3/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:numpy --apt-upgrade python-pot --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=numpy/1:1.26.4+ds-11ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-2.secgroup --name adt-plucky-amd64-python-pot-20241115-115446-juju-7f2275-prod-proposed-migration-environment-15-86f4888f-a9e4-4bea-bed6-27c84e32d259 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 44s autopkgtest [11:55:31]: testbed dpkg architecture: amd64 44s autopkgtest [11:55:31]: testbed apt version: 2.9.8 44s autopkgtest [11:55:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup 45s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 45s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1056 kB] 45s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 45s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [94.5 kB] 45s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 45s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [176 kB] 45s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [109 kB] 45s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 45s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [297 kB] 45s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [833 kB] 45s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9416 B] 45s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 45s Fetched 2704 kB in 1s (3151 kB/s) 46s Reading package lists... 48s Reading package lists... 49s Building dependency tree... 49s Reading state information... 49s Calculating upgrade... 49s The following packages will be upgraded: 49s firmware-sof-signed grub-common grub-pc grub-pc-bin grub2-common libcap-ng0 49s libexpat1 lxd-installer man-db pastebinit python3-systemd xfsprogs 49s 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 49s Need to get 13.6 MB of archives. 49s After this operation, 477 kB of additional disk space will be used. 49s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 firmware-sof-signed all 2024.06-1ubuntu2 [7083 kB] 50s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-3build1 [15.6 kB] 50s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1 amd64 2.6.4-1 [94.9 kB] 50s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 man-db amd64 2.13.0-1 [1352 kB] 50s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 grub2-common amd64 2.12-5ubuntu7 [672 kB] 50s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-pc amd64 2.12-5ubuntu7 [137 kB] 50s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-pc-bin amd64 2.12-5ubuntu7 [1127 kB] 50s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-common amd64 2.12-5ubuntu7 [2110 kB] 50s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 lxd-installer all 9 [5084 B] 50s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 pastebinit all 1.7.1-1 [14.9 kB] 50s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build5 [45.7 kB] 50s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 xfsprogs amd64 6.8.0-2.2ubuntu2 [926 kB] 51s Preconfiguring packages ... 51s Fetched 13.6 MB in 1s (14.3 MB/s) 51s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 51s Preparing to unpack .../firmware-sof-signed_2024.06-1ubuntu2_all.deb ... 51s Unpacking firmware-sof-signed (2024.06-1ubuntu2) over (2024.06-1ubuntu1) ... 51s Preparing to unpack .../libcap-ng0_0.8.5-3build1_amd64.deb ... 51s Unpacking libcap-ng0:amd64 (0.8.5-3build1) over (0.8.5-1) ... 51s Setting up libcap-ng0:amd64 (0.8.5-3build1) ... 51s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75568 files and directories currently installed.) 51s Preparing to unpack .../0-libexpat1_2.6.4-1_amd64.deb ... 51s Unpacking libexpat1:amd64 (2.6.4-1) over (2.6.2-2) ... 51s Preparing to unpack .../1-man-db_2.13.0-1_amd64.deb ... 51s Unpacking man-db (2.13.0-1) over (2.12.1-3) ... 51s Preparing to unpack .../2-grub2-common_2.12-5ubuntu7_amd64.deb ... 51s Unpacking grub2-common (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 52s Preparing to unpack .../3-grub-pc_2.12-5ubuntu7_amd64.deb ... 52s Unpacking grub-pc (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 52s Preparing to unpack .../4-grub-pc-bin_2.12-5ubuntu7_amd64.deb ... 52s Unpacking grub-pc-bin (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 52s Preparing to unpack .../5-grub-common_2.12-5ubuntu7_amd64.deb ... 52s Unpacking grub-common (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 52s Preparing to unpack .../6-lxd-installer_9_all.deb ... 52s Unpacking lxd-installer (9) over (8) ... 52s Preparing to unpack .../7-pastebinit_1.7.1-1_all.deb ... 52s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 52s Preparing to unpack .../8-python3-systemd_235-1build5_amd64.deb ... 52s Unpacking python3-systemd (235-1build5) over (235-1build4) ... 52s Preparing to unpack .../9-xfsprogs_6.8.0-2.2ubuntu2_amd64.deb ... 52s Unpacking xfsprogs (6.8.0-2.2ubuntu2) over (6.8.0-2.2ubuntu1) ... 52s Setting up libexpat1:amd64 (2.6.4-1) ... 52s Setting up firmware-sof-signed (2024.06-1ubuntu2) ... 52s Setting up pastebinit (1.7.1-1) ... 52s Setting up man-db (2.13.0-1) ... 52s Updating database of manual pages ... 54s man-db.service is a disabled or a static unit not running, not starting it. 54s Setting up grub-common (2.12-5ubuntu7) ... 54s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 55s Setting up xfsprogs (6.8.0-2.2ubuntu2) ... 55s update-initramfs: deferring update (trigger activated) 56s Setting up lxd-installer (9) ... 56s Setting up python3-systemd (235-1build5) ... 56s Setting up grub2-common (2.12-5ubuntu7) ... 56s Setting up grub-pc-bin (2.12-5ubuntu7) ... 56s Setting up grub-pc (2.12-5ubuntu7) ... 57s Installing for i386-pc platform. 57s Installation finished. No error reported. 57s Sourcing file `/etc/default/grub' 57s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 57s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 57s Generating grub configuration file ... 57s Found linux image: /boot/vmlinuz-6.11.0-8-generic 57s Found initrd image: /boot/initrd.img-6.11.0-8-generic 58s Warning: os-prober will not be executed to detect other bootable partitions. 58s Systems on them will not be added to the GRUB boot configuration. 58s Check GRUB_DISABLE_OS_PROBER documentation entry. 58s Adding boot menu entry for UEFI Firmware Settings ... 58s done 58s Processing triggers for libc-bin (2.40-1ubuntu3) ... 58s Processing triggers for install-info (7.1.1-1) ... 58s Processing triggers for initramfs-tools (0.142ubuntu34) ... 58s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 58s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 67s Reading package lists... 67s Building dependency tree... 67s Reading state information... 67s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 68s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 68s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 68s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 68s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 69s Reading package lists... 69s Reading package lists... 69s Building dependency tree... 69s Reading state information... 69s Calculating upgrade... 70s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 70s Reading package lists... 70s Building dependency tree... 70s Reading state information... 70s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 70s autopkgtest [11:55:57]: rebooting testbed after setup commands that affected boot 87s autopkgtest [11:56:14]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 90s autopkgtest [11:56:17]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pot 92s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pot 0.9.4+dfsg-1 (dsc) [2114 B] 92s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pot 0.9.4+dfsg-1 (tar) [775 kB] 92s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pot 0.9.4+dfsg-1 (diff) [5972 B] 92s gpgv: Signature made Fri Jul 26 13:27:39 2024 UTC 92s gpgv: using RSA key CFC5EF8510851E7355B55E809D11582AFD548CFA 92s gpgv: issuer "gspr@nonempty.org" 92s gpgv: Can't check signature: No public key 92s dpkg-source: warning: cannot verify inline signature for ./python-pot_0.9.4+dfsg-1.dsc: no acceptable signature found 92s autopkgtest [11:56:19]: testing package python-pot version 0.9.4+dfsg-1 93s autopkgtest [11:56:20]: build not needed 93s autopkgtest [11:56:20]: test upstream.sh: preparing testbed 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s Starting pkgProblemResolver with broken count: 0 95s Starting 2 pkgProblemResolver with broken count: 0 95s Done 96s The following additional packages will be installed: 96s libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 python3-all 96s python3-decorator python3-iniconfig python3-joblib python3-numpy 96s python3-packaging python3-pluggy python3-pot python3-pytest python3-scipy 96s python3-sklearn python3-sklearn-lib python3-threadpoolctl 96s Suggested packages: 96s python-joblib-doc gcc gfortran python-numpy-doc python3-dev python-scipy-doc 96s python3-dap python-sklearn-doc ipython3 96s Recommended packages: 96s python3-simplejson python3-psutil g++ | c++-compiler python3-pil 96s python3-matplotlib 96s The following NEW packages will be installed: 96s autopkgtest-satdep libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 96s python3-all python3-decorator python3-iniconfig python3-joblib python3-numpy 96s python3-packaging python3-pluggy python3-pot python3-pytest python3-scipy 96s python3-sklearn python3-sklearn-lib python3-threadpoolctl 96s 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded. 96s Need to get 34.5 MB/34.5 MB of archives. 96s After this operation, 164 MB of additional disk space will be used. 96s Get:1 /tmp/autopkgtest.VGBaVN/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [724 B] 96s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 96s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 96s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 96s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 96s Get:6 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 96s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.12.6-0ubuntu1 [886 B] 96s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 96s Get:9 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 96s Get:10 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.3.2-5 [206 kB] 96s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-numpy amd64 1:1.26.4+ds-11ubuntu1 [5319 kB] 97s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 97s Get:13 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 97s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB] 97s Get:15 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pot amd64 0.9.4+dfsg-1 [223 kB] 97s Get:16 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 97s Get:17 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 97s Get:18 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sklearn-lib amd64 1.4.2+dfsg-6 [3920 kB] 97s Get:19 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sklearn all 1.4.2+dfsg-6 [2257 kB] 97s Fetched 34.5 MB in 1s (24.0 MB/s) 97s Selecting previously unselected package libblas3:amd64. 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75575 files and directories currently installed.) 98s Preparing to unpack .../00-libblas3_3.12.0-3build2_amd64.deb ... 98s Unpacking libblas3:amd64 (3.12.0-3build2) ... 98s Selecting previously unselected package libgfortran5:amd64. 98s Preparing to unpack .../01-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 98s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 98s Selecting previously unselected package libgomp1:amd64. 98s Preparing to unpack .../02-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 98s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 98s Selecting previously unselected package liblapack3:amd64. 98s Preparing to unpack .../03-liblapack3_3.12.0-3build2_amd64.deb ... 98s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 98s Selecting previously unselected package liblbfgsb0:amd64. 98s Preparing to unpack .../04-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 98s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 98s Selecting previously unselected package python3-all. 98s Preparing to unpack .../05-python3-all_3.12.6-0ubuntu1_amd64.deb ... 98s Unpacking python3-all (3.12.6-0ubuntu1) ... 98s Selecting previously unselected package python3-decorator. 98s Preparing to unpack .../06-python3-decorator_5.1.1-5_all.deb ... 98s Unpacking python3-decorator (5.1.1-5) ... 98s Selecting previously unselected package python3-iniconfig. 98s Preparing to unpack .../07-python3-iniconfig_1.1.1-2_all.deb ... 98s Unpacking python3-iniconfig (1.1.1-2) ... 98s Selecting previously unselected package python3-joblib. 98s Preparing to unpack .../08-python3-joblib_1.3.2-5_all.deb ... 98s Unpacking python3-joblib (1.3.2-5) ... 98s Selecting previously unselected package python3-numpy. 98s Preparing to unpack .../09-python3-numpy_1%3a1.26.4+ds-11ubuntu1_amd64.deb ... 98s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 98s Selecting previously unselected package python3-packaging. 98s Preparing to unpack .../10-python3-packaging_24.1-1_all.deb ... 98s Unpacking python3-packaging (24.1-1) ... 98s Selecting previously unselected package python3-pluggy. 98s Preparing to unpack .../11-python3-pluggy_1.5.0-1_all.deb ... 98s Unpacking python3-pluggy (1.5.0-1) ... 98s Selecting previously unselected package python3-scipy. 98s Preparing to unpack .../12-python3-scipy_1.13.1-5_amd64.deb ... 98s Unpacking python3-scipy (1.13.1-5) ... 99s Selecting previously unselected package python3-pot. 99s Preparing to unpack .../13-python3-pot_0.9.4+dfsg-1_amd64.deb ... 99s Unpacking python3-pot (0.9.4+dfsg-1) ... 99s Selecting previously unselected package python3-pytest. 99s Preparing to unpack .../14-python3-pytest_8.3.3-1_all.deb ... 99s Unpacking python3-pytest (8.3.3-1) ... 99s Selecting previously unselected package python3-threadpoolctl. 99s Preparing to unpack .../15-python3-threadpoolctl_3.1.0-1_all.deb ... 99s Unpacking python3-threadpoolctl (3.1.0-1) ... 99s Selecting previously unselected package python3-sklearn-lib:amd64. 99s Preparing to unpack .../16-python3-sklearn-lib_1.4.2+dfsg-6_amd64.deb ... 99s Unpacking python3-sklearn-lib:amd64 (1.4.2+dfsg-6) ... 99s Selecting previously unselected package python3-sklearn. 99s Preparing to unpack .../17-python3-sklearn_1.4.2+dfsg-6_all.deb ... 99s Unpacking python3-sklearn (1.4.2+dfsg-6) ... 99s Selecting previously unselected package autopkgtest-satdep. 99s Preparing to unpack .../18-1-autopkgtest-satdep.deb ... 99s Unpacking autopkgtest-satdep (0) ... 99s Setting up python3-iniconfig (1.1.1-2) ... 99s Setting up python3-joblib (1.3.2-5) ... 99s Setting up python3-threadpoolctl (3.1.0-1) ... 100s Setting up python3-all (3.12.6-0ubuntu1) ... 100s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 100s Setting up python3-decorator (5.1.1-5) ... 100s Setting up libblas3:amd64 (3.12.0-3build2) ... 100s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 100s Setting up python3-packaging (24.1-1) ... 100s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 100s Setting up python3-pluggy (1.5.0-1) ... 100s Setting up liblapack3:amd64 (3.12.0-3build2) ... 100s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 100s Setting up python3-pytest (8.3.3-1) ... 100s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 102s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 102s Setting up python3-scipy (1.13.1-5) ... 105s Setting up python3-pot (0.9.4+dfsg-1) ... 105s Setting up python3-sklearn-lib:amd64 (1.4.2+dfsg-6) ... 105s Setting up python3-sklearn (1.4.2+dfsg-6) ... 107s Setting up autopkgtest-satdep (0) ... 107s Processing triggers for man-db (2.13.0-1) ... 108s Processing triggers for libc-bin (2.40-1ubuntu3) ... 110s (Reading database ... 79208 files and directories currently installed.) 110s Removing autopkgtest-satdep (0) ... 111s autopkgtest [11:56:38]: test upstream.sh: [----------------------- 111s Running tests with Python 3.12. 112s ============================= test session starts ============================== 112s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 112s rootdir: /tmp/autopkgtest.VGBaVN/autopkgtest_tmp 112s plugins: typeguard-4.4.1 112s collected 615 items 112s 118s test/gromov/test_bregman.py ..x..x............ [ 2%] 119s test/gromov/test_dictionary.py .... [ 3%] 119s test/gromov/test_estimators.py .. [ 3%] 120s test/gromov/test_gw.py ....s....x....... [ 6%] 120s test/gromov/test_lowrank.py .......... [ 8%] 121s test/gromov/test_quantized.py .... [ 8%] 123s test/gromov/test_semirelaxed.py .....x....... [ 11%] 123s test/test_1d_solver.py ...s..s...... [ 13%] 123s test/test_backend.py .......... [ 14%] 127s test/test_bregman.py ......................................sss.......... [ 23%] 132s .....................................ss....ss..ss..s....... [ 32%] 132s test/test_coot.py ......... [ 34%] 133s test/test_da.py .....................s... [ 38%] 133s test/test_dmmot.py .. [ 38%] 133s test/test_dr.py ssssss [ 39%] 134s test/test_factored.py .. [ 39%] 138s test/test_gaussian.py .................. [ 42%] 138s test/test_gnn.py ssss [ 43%] 140s test/test_lowrank.py ........... [ 45%] 140s test/test_mapping.py sss. [ 45%] 141s test/test_optim.py ...... [ 46%] 141s test/test_ot.py ....s..........s.. [ 49%] 142s test/test_partial.py ...... [ 50%] 142s test/test_plot.py ss [ 51%] 143s test/test_regpath.py .. [ 51%] 143s test/test_sliced.py ...........s..s............. [ 55%] 143s test/test_smooth.py ... [ 56%] 146s test/test_solvers.py .s................................................. [ 64%] 147s .........................ssssssss........ssssssss....................... [ 76%] 150s .ssssssss........ssssssss...ss............. [ 83%] 153s test/test_stochastic.py ......... [ 84%] 156s test/test_unbalanced.py ................................................ [ 92%] 164s ................ [ 95%] 164s test/test_utils.py ........................... [ 99%] 164s test/test_weak.py .. [100%] 164s 164s =============================== warnings summary =============================== 164s test/gromov/test_bregman.py: 12 warnings 164s test/gromov/test_estimators.py: 1 warning 164s test/test_bregman.py: 6 warnings 164s test/test_coot.py: 1 warning 164s test/test_da.py: 4 warnings 164s test/test_optim.py: 1 warning 164s test/test_partial.py: 1 warning 164s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:531: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 164s warnings.warn("Sinkhorn did not converge. You might want to " 164s 164s test/gromov/test_bregman.py::test_BAPG_gromov[numpy] 164s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:507: RuntimeWarning: divide by zero encountered in divide 164s column_scaling = q / nx.sum(T, 0) 164s 164s test/gromov/test_bregman.py::test_BAPG_gromov[numpy] 164s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:508: RuntimeWarning: invalid value encountered in multiply 164s T = nx.reshape(column_scaling, (1, -1)) * T 164s 164s test/gromov/test_bregman.py::test_BAPG_fgw[numpy] 164s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:1357: RuntimeWarning: divide by zero encountered in divide 164s row_scaling = p / nx.sum(T, 1) 164s 164s test/gromov/test_bregman.py::test_BAPG_fgw[numpy] 164s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:1358: RuntimeWarning: invalid value encountered in multiply 164s T = nx.reshape(row_scaling, (-1, 1)) * T 164s 164s test/gromov/test_bregman.py::test_entropic_fgw_barycenter[numpy] 164s /usr/lib/python3/dist-packages/ot/backend.py:1153: RuntimeWarning: divide by zero encountered in log 164s return np.log(a) 164s 164s test/gromov/test_bregman.py::test_entropic_fgw_barycenter[numpy] 164s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:498: RuntimeWarning: divide by zero encountered in divide 164s v = b / KtransposeU 164s 164s test/gromov/test_bregman.py::test_entropic_fgw_barycenter[numpy] 164s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:498: RuntimeWarning: overflow encountered in divide 164s v = b / KtransposeU 164s 164s test/gromov/test_bregman.py::test_entropic_fgw_barycenter[numpy] 164s test/gromov/test_bregman.py::test_gromov_entropic_barycenter[numpy] 164s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:506: UserWarning: Warning: numerical errors at iteration 0 164s warnings.warn('Warning: numerical errors at iteration %d' % ii) 164s 164s test/gromov/test_bregman.py::test_entropic_fgw_barycenter[numpy] 164s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:1050: UserWarning: Solver failed to produce a transport plan. You might want to increase the regularization parameter `epsilon`. 164s warnings.warn("Solver failed to produce a transport plan. You might " 164s 164s test/gromov/test_bregman.py::test_gromov_entropic_barycenter[numpy] 164s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:218: UserWarning: Solver failed to produce a transport plan. You might want to increase the regularization parameter `epsilon`. 164s warnings.warn("Solver failed to produce a transport plan. You might " 164s 164s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 164s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 164s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 164s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 164s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:222: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 164s index[0] = generator.choice(len_p, size=1, p=nx.to_numpy(p)) 164s 164s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 164s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 164s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 164s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 164s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:223: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 164s index[1] = generator.choice(len_q, size=1, p=nx.to_numpy(q)) 164s 164s test/gromov/test_estimators.py: 400 warnings 164s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:228: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 164s index[0] = generator.choice(len_p, size=1, p=nx.to_numpy(p)) 164s 164s test/gromov/test_estimators.py: 400 warnings 164s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:230: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 164s index[1] = generator.choice( 164s 164s test/gromov/test_gw.py::test_gromov_integer_warnings[numpy] 164s /tmp/autopkgtest.VGBaVN/autopkgtest_tmp/test/gromov/test_gw.py:144: UserWarning: Input structure matrix consists of integers. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input structure matrix consists of floating point elements. 164s G = ot.gromov.gromov_wasserstein( 164s 164s test/gromov/test_gw.py::test_gromov_integer_warnings[numpy] 164s /tmp/autopkgtest.VGBaVN/autopkgtest_tmp/test/gromov/test_gw.py:147: UserWarning: Input structure matrix consists of integers. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input structure matrix consists of floating point elements. 164s Gb = nx.to_numpy(ot.gromov.gromov_wasserstein( 164s 164s test/gromov/test_gw.py::test_fgw_integer_warnings[numpy] 164s /tmp/autopkgtest.VGBaVN/autopkgtest_tmp/test/gromov/test_gw.py:641: UserWarning: Input feature matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input feature matrix consists of floating point elements. 164s G, log = ot.gromov.fused_gromov_wasserstein( 164s 164s test/gromov/test_gw.py::test_fgw_integer_warnings[numpy] 164s /tmp/autopkgtest.VGBaVN/autopkgtest_tmp/test/gromov/test_gw.py:644: UserWarning: Input feature matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input feature matrix consists of floating point elements. 164s Gb, logb = ot.gromov.fused_gromov_wasserstein( 164s 164s test/gromov/test_lowrank.py::test_lowrank_gromov_wasserstein_samples 164s test/gromov/test_lowrank.py::test_lowrank_wasserstein_samples_gamma_init[theory] 164s /usr/lib/python3/dist-packages/ot/gromov/_lowrank.py:270: UserWarning: Low Rank GW did not converge. You might want to increase the number of iterations `numItermax` 164s warnings.warn( 164s 164s test/gromov/test_quantized.py::test_quantized_gw[numpy] 164s test/gromov/test_quantized.py::test_quantized_gw[numpy] 164s /usr/lib/python3/dist-packages/ot/gromov/_quantized.py:699: UserWarning: Requested number of partitions higher than the number of nodeshence we enforce each node to be a partition. 164s part1 = get_graph_partition(C1_aux, npart1, part_method, F1, alpha, random_state, nx) 164s 164s test/gromov/test_quantized.py::test_quantized_fgw_samples[numpy] 164s test/gromov/test_quantized.py::test_quantized_fgw_samples[numpy] 164s test/gromov/test_quantized.py::test_quantized_fgw_samples[numpy] 164s test/gromov/test_quantized.py::test_quantized_fgw_samples[numpy] 164s test/gromov/test_quantized.py::test_quantized_fgw_samples[numpy] 164s /usr/lib/python3/dist-packages/ot/gromov/_quantized.py:1097: UserWarning: Requested number of partitions higher than the number of nodeshence we enforce each node to be a partition. 164s part1, rep_indices1 = get_partition_and_representants_samples( 164s 164s test/test_bregman.py::test_nan_warning[sinkhorn] 164s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:489: RuntimeWarning: divide by zero encountered in divide 164s K = nx.exp(M / (-reg)) 164s 164s test/test_bregman.py::test_nan_warning[sinkhorn] 164s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:489: RuntimeWarning: invalid value encountered in divide 164s K = nx.exp(M / (-reg)) 164s 164s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 164s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1077: RuntimeWarning: divide by zero encountered in divide 164s return nx.exp(-(M - alpha.reshape((dim_a, 1)) 164s 164s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 164s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1077: RuntimeWarning: invalid value encountered in divide 164s return nx.exp(-(M - alpha.reshape((dim_a, 1)) 164s 164s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 164s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 164s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1082: RuntimeWarning: divide by zero encountered in divide 164s return nx.exp(-(M - alpha.reshape((dim_a, 1)) - beta.reshape((1, dim_b))) 164s 164s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 164s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 164s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1082: RuntimeWarning: invalid value encountered in divide 164s return nx.exp(-(M - alpha.reshape((dim_a, 1)) - beta.reshape((1, dim_b))) 164s 164s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-True-True] 164s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-True-False] 164s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-False-True] 164s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-False-False] 164s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_stabilized] 164s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_epsilon_scaling] 164s test/test_bregman.py::test_sinkhorn_warmstart 164s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1145: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 164s warnings.warn("Sinkhorn did not converge. You might want to " 164s 164s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-True-True] 164s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-True-False] 164s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-False-True] 164s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-False-False] 164s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_log] 164s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:747: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 164s warnings.warn("Sinkhorn did not converge. You might want to " 164s 164s test/test_bregman.py::test_sinkhorn_empty 164s test/test_bregman.py::test_sinkhorn_variants[numpy] 164s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-greenkhorn] 164s test/test_bregman.py::test_sinkhorn_variants_log 164s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:919: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 164s warnings.warn("Sinkhorn did not converge. You might want to " 164s 164s test/test_coot.py::test_coot[numpy-False] 164s test/test_coot.py::test_coot[numpy-True] 164s test/test_coot.py::test_coot[numpy-1] 164s test/test_coot.py::test_coot[numpy-0] 164s test/test_coot.py::test_coot_warmstart[numpy] 164s test/test_coot.py::test_coot_log[numpy] 164s /usr/lib/python3/dist-packages/ot/lp/__init__.py:361: UserWarning: numItermax reached before optimality. Try to increase numItermax. 164s result_code_string = check_result(result_code) 164s 164s test/test_da.py::test_sinkhorn_transport_class[numpy] 164s /usr/lib/python3/dist-packages/ot/da.py:1159: UserWarning: The method has been set to 'sinkhorn_log' as it is the only method available for out_of_sample_map='continuous' 164s warnings.warn("The method has been set to 'sinkhorn_log' as it is the only method available for out_of_sample_map='continuous'") 164s 164s test/test_mapping.py::test_joint_OT_mapping 164s /usr/lib/python3/dist-packages/ot/mapping.py:557: RuntimeWarning: invalid value encountered in scalar divide 164s if abs(vloss[-1] - vloss[-2]) / abs(vloss[-2]) < stopThr: 164s 164s test/test_mapping.py::test_joint_OT_mapping 164s /usr/lib/python3/dist-packages/ot/mapping.py:565: RuntimeWarning: invalid value encountered in scalar divide 164s it, vloss[-1], (vloss[-1] - vloss[-2]) / abs(vloss[-2]))) 164s 164s test/test_regpath.py: 232 warnings 164s /usr/lib/python3/dist-packages/ot/regpath.py:488: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 164s M[-1, -1] = 1 / s 164s 164s test/test_sliced.py::test_sliced_sphere_backend_type_devices[numpy] 164s /usr/lib/python3/dist-packages/ot/lp/solver_1d.py:737: RuntimeWarning: divide by zero encountered in divide 164s tc[mask_end > 0] = ((Ctp - Ctm + tm * dCptm - tp * dCmtp) / (dCptm - dCmtp))[mask_end > 0] 164s 164s test/test_sliced.py::test_sliced_sphere_backend_type_devices[numpy] 164s /usr/lib/python3/dist-packages/ot/lp/solver_1d.py:737: RuntimeWarning: invalid value encountered in divide 164s tc[mask_end > 0] = ((Ctp - Ctm + tm * dCptm - tp * dCmtp) / (dCptm - dCmtp))[mask_end > 0] 164s 164s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-kl] 164s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-entropy] 164s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-kl] 164s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-entropy] 164s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-1] 164s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 164s test/test_unbalanced.py::test_unbalanced_multiple_inputs[numpy-sinkhorn_reg_scaling] 164s /usr/lib/python3/dist-packages/ot/unbalanced.py:158: UserWarning: Method not implemented yet. Using classic Sinkhorn-Knopp 164s warnings.warn('Method not implemented yet. Using classic Sinkhorn-Knopp') 164s 164s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-kl] 164s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-entropy] 164s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-kl] 164s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-entropy] 164s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-kl-True] 164s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-kl-False] 164s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-entropy-True] 164s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-entropy-False] 164s /usr/lib/python3/dist-packages/ot/unbalanced.py:295: UserWarning: Method not implemented yet. Using classic Sinkhorn-Knopp 164s warnings.warn('Method not implemented yet. Using classic Sinkhorn-Knopp') 164s 164s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn-inf] 164s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 164s /usr/lib/python3/dist-packages/ot/unbalanced.py:487: RuntimeWarning: overflow encountered in divide 164s v = (b / Ktu) ** fi_2 164s 164s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn-inf] 164s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 164s /usr/lib/python3/dist-packages/ot/unbalanced.py:494: UserWarning: Numerical errors at iteration 180 164s warnings.warn('Numerical errors at iteration %s' % i) 164s 164s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_stabilized-inf] 164s /usr/lib/python3/dist-packages/ot/unbalanced.py:748: UserWarning: Stabilized Unbalanced Sinkhorn did not converge.Try a larger entropy `reg` or a lower mass `reg_m`.Or a larger absorption threshold `tau`. 164s warnings.warn("Stabilized Unbalanced Sinkhorn did not converge." + 164s 164s test/test_unbalanced.py::test_mm_wrong_divergence[numpy] 164s /usr/lib/python3/dist-packages/ot/unbalanced.py:1263: UserWarning: The div parameter should be either equal to 'kl' or 'l2': it has been set to 'kl'. 164s warnings.warn("The div parameter should be either equal to 'kl' or \ 164s 164s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 164s ========== 543 passed, 68 skipped, 4 xfailed, 1146 warnings in 52.32s ========== 165s ********** 165s autopkgtest [11:57:32]: test upstream.sh: -----------------------] 165s autopkgtest [11:57:32]: test upstream.sh: - - - - - - - - - - results - - - - - - - - - - 165s upstream.sh PASS 166s autopkgtest [11:57:33]: @@@@@@@@@@@@@@@@@@@@ summary 166s upstream.sh PASS 170s nova [W] Skipping flock for amd64 170s Creating nova instance adt-plucky-amd64-python-pot-20241115-115446-juju-7f2275-prod-proposed-migration-environment-15-86f4888f-a9e4-4bea-bed6-27c84e32d259 from image adt/ubuntu-plucky-amd64-server-20241114.img (UUID 79d80331-8736-463c-82c6-8c9e13c0a4ca)...