0s autopkgtest [01:38:26]: starting date and time: 2025-03-16 01:38:26+0000 0s autopkgtest [01:38:26]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [01:38:26]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8s7sq38u/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:scikit-learn --apt-upgrade python-pauvre --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=scikit-learn/1.4.2+dfsg-8 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-13.secgroup --name adt-plucky-amd64-python-pauvre-20250316-013826-juju-7f2275-prod-proposed-migration-environment-2-4507fe4b-fd8f-4640-9a01-8debb2aacbb9 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 48s autopkgtest [01:39:14]: testbed dpkg architecture: amd64 48s autopkgtest [01:39:14]: testbed apt version: 2.9.31ubuntu1 48s autopkgtest [01:39:14]: @@@@@@@@@@@@@@@@@@@@ test bed setup 48s autopkgtest [01:39:14]: testbed release detected to be: None 49s autopkgtest [01:39:15]: updating testbed package index (apt update) 50s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 50s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 50s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 50s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 50s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [365 kB] 50s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.7 kB] 50s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [41.4 kB] 50s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [66.6 kB] 50s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [84.0 kB] 50s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1844 B] 50s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 50s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [168 kB] 50s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [338 kB] 50s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [14.9 kB] 50s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [9324 B] 50s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [18.0 kB] 50s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 51s Fetched 1252 kB in 1s (1333 kB/s) 52s Reading package lists... 52s Reading package lists... 52s Building dependency tree... 52s Reading state information... 53s Calculating upgrade... 53s Calculating upgrade... 53s The following package was automatically installed and is no longer required: 53s libnl-genl-3-200 53s Use 'sudo apt autoremove' to remove it. 53s The following NEW packages will be installed: 53s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 53s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 53s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 53s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 53s The following packages will be upgraded: 53s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 53s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 53s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 53s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 53s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 53s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 53s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 53s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 53s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 53s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 53s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 53s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 53s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 53s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 53s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 53s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 53s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 53s parted pci.ids pciutils pinentry-curses python-apt-common python3 53s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 53s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 53s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 53s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 53s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 53s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 53s xz-utils 53s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 53s Need to get 829 MB of archives. 53s After this operation, 325 MB of additional disk space will be used. 53s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 54s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 54s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 54s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 54s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 54s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 54s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 54s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 54s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 54s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 54s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 54s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 54s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 54s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 54s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 54s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 54s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 54s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 54s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 54s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 54s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 54s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 54s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 54s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 54s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 54s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 54s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 54s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 54s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 54s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 54s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 54s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 55s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 55s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 55s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 55s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 55s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 55s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 55s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 55s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 55s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 55s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 55s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 55s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 55s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 55s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 55s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 55s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 55s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 55s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 55s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 55s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 55s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 55s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 55s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 55s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 55s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 55s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 55s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 55s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 55s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 55s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 55s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 55s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 55s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 55s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 55s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 55s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 55s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 55s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 55s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 55s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 55s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 55s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 55s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 55s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 55s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 55s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 55s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 55s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 55s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 55s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 55s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 55s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 55s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 55s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 55s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 55s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 55s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 55s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 55s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 55s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 55s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 55s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 55s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 55s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 56s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 56s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 56s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 56s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 56s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 56s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 56s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 56s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 56s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 57s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 57s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 57s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 58s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 84s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 84s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 84s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 84s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 84s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 84s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 84s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 84s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 85s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 86s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 89s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 89s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 89s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 89s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 89s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 89s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 90s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 90s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 90s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 90s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 90s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 90s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 90s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 90s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 90s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 90s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 90s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 90s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 90s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 91s Preconfiguring packages ... 91s Fetched 829 MB in 37s (22.4 MB/s) 91s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 95s Preparing to unpack .../libaudit1_1%3a4.0.2-2ubuntu2_amd64.deb ... 95s Unpacking libaudit1:amd64 (1:4.0.2-2ubuntu2) over (1:4.0.2-2ubuntu1) ... 96s Setting up libaudit1:amd64 (1:4.0.2-2ubuntu2) ... 96s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 97s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 97s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 97s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 97s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 97s Setting up python3-minimal (3.13.2-2) ... 97s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 98s Preparing to unpack .../0-libsqlite3-0_3.46.1-2_amd64.deb ... 98s Unpacking libsqlite3-0:amd64 (3.46.1-2) over (3.46.1-1) ... 98s Preparing to unpack .../1-python3.13_3.13.2-2_amd64.deb ... 98s Unpacking python3.13 (3.13.2-2) over (3.13.2-1) ... 98s Preparing to unpack .../2-python3.13-minimal_3.13.2-2_amd64.deb ... 98s Unpacking python3.13-minimal (3.13.2-2) over (3.13.2-1) ... 98s Preparing to unpack .../3-libpython3.13-minimal_3.13.2-2_amd64.deb ... 98s Unpacking libpython3.13-minimal:amd64 (3.13.2-2) over (3.13.2-1) ... 98s Preparing to unpack .../4-libpython3.13-stdlib_3.13.2-2_amd64.deb ... 98s Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 98s Preparing to unpack .../5-libpython3-stdlib_3.13.2-2_amd64.deb ... 98s Unpacking libpython3-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 98s Preparing to unpack .../6-rsync_3.4.1+ds1-3_amd64.deb ... 98s Unpacking rsync (3.4.1+ds1-3) over (3.4.1-0syncable1) ... 98s Selecting previously unselected package libdebuginfod-common. 98s Preparing to unpack .../7-libdebuginfod-common_0.192-4_all.deb ... 98s Unpacking libdebuginfod-common (0.192-4) ... 98s Preparing to unpack .../8-libsemanage-common_3.7-2.1build1_all.deb ... 98s Unpacking libsemanage-common (3.7-2.1build1) over (3.7-2.1) ... 98s Setting up libsemanage-common (3.7-2.1build1) ... 98s (Reading database ... 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.../23-parted_3.6-5_amd64.deb ... 101s Unpacking parted (3.6-5) over (3.6-4build1) ... 101s Preparing to unpack .../24-libparted2t64_3.6-5_amd64.deb ... 101s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 101s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 101s Unpacking libparted2t64:amd64 (3.6-5) over (3.6-4build1) ... 101s Preparing to unpack .../25-pci.ids_0.0~2025.03.09-1_all.deb ... 101s Unpacking pci.ids (0.0~2025.03.09-1) over (0.0~2025.02.12-1) ... 101s Preparing to unpack .../26-pciutils_1%3a3.13.0-2_amd64.deb ... 101s Unpacking pciutils (1:3.13.0-2) over (1:3.13.0-1) ... 101s Preparing to unpack .../27-libpci3_1%3a3.13.0-2_amd64.deb ... 101s Unpacking libpci3:amd64 (1:3.13.0-2) over (1:3.13.0-1) ... 101s Preparing to unpack .../28-strace_6.13+ds-1ubuntu1_amd64.deb ... 101s Unpacking strace 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(2.44-3ubuntu1) over (2.44-2ubuntu1) ... 102s Preparing to unpack .../36-binutils_2.44-3ubuntu1_amd64.deb ... 102s Unpacking binutils (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 102s Preparing to unpack .../37-binutils-common_2.44-3ubuntu1_amd64.deb ... 102s Unpacking binutils-common:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 102s Preparing to unpack .../38-libsframe1_2.44-3ubuntu1_amd64.deb ... 102s Unpacking libsframe1:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 102s Preparing to unpack .../39-hwdata_0.393-3_all.deb ... 102s Unpacking hwdata (0.393-3) over (0.392-1) ... 102s Selecting previously unselected package pnp.ids. 102s Preparing to unpack .../40-pnp.ids_0.393-3_all.deb ... 102s Unpacking pnp.ids (0.393-3) ... 102s Preparing to unpack .../41-linux-tools-common_6.14.0-10.10_all.deb ... 102s Unpacking linux-tools-common (6.14.0-10.10) over (6.12.0-16.16) ... 102s Selecting previously unselected package bpftool. 102s Preparing to unpack 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.../56-initramfs-tools_0.146ubuntu1_all.deb ... 106s Unpacking initramfs-tools (0.146ubuntu1) over (0.145ubuntu3) ... 106s Preparing to unpack .../57-initramfs-tools-core_0.146ubuntu1_all.deb ... 106s Unpacking initramfs-tools-core (0.146ubuntu1) over (0.145ubuntu3) ... 106s Preparing to unpack .../58-initramfs-tools-bin_0.146ubuntu1_amd64.deb ... 106s Unpacking initramfs-tools-bin (0.146ubuntu1) over (0.145ubuntu3) ... 106s Selecting previously unselected package libdebuginfod1t64:amd64. 106s Preparing to unpack .../59-libdebuginfod1t64_0.192-4_amd64.deb ... 106s Unpacking libdebuginfod1t64:amd64 (0.192-4) ... 106s Preparing to unpack .../60-libftdi1-2_1.5-8build1_amd64.deb ... 106s Unpacking libftdi1-2:amd64 (1.5-8build1) over (1.5-8) ... 106s Preparing to unpack .../61-libgpgme11t64_1.24.2-1ubuntu2_amd64.deb ... 106s Unpacking libgpgme11t64:amd64 (1.24.2-1ubuntu2) over (1.24.2-1ubuntu1) ... 106s Preparing to unpack .../62-libjemalloc2_5.3.0-3_amd64.deb ... 106s Unpacking 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(1.0.6-6) over (1.0.6-5) ... 112s Preparing to unpack .../79-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ... 112s Unpacking python3-rpds-py (0.21.0-2ubuntu2) over (0.21.0-2ubuntu1) ... 112s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 112s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 112s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 112s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 112s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 112s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 113s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 113s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 113s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 113s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 113s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 113s Setting up media-types (13.0.0) ... 113s Installing new version of config file /etc/mime.types ... 113s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 113s Setting up ubuntu-kernel-accessories (1.549) ... 113s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 113s Setting up pci.ids (0.0~2025.03.09-1) ... 113s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 113s Setting up apt-utils (2.9.33) ... 113s Setting up libdebuginfod-common (0.192-4) ... 113s Setting up exfatprogs (1.2.8-1) ... 113s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 113s Setting up bpftool (7.6.0+6.14.0-10.10) ... 113s Setting up libestr0:amd64 (0.1.11-2) ... 113s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 113s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 113s Setting up dosfstools (4.2-1.2) ... 113s Setting up rsyslog (8.2412.0-2ubuntu2) ... 113s info: The user `syslog' is already a member of `adm'. 114s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 114s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 114s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 114s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 114s Setting up systemd (257.3-1ubuntu3) ... 114s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 114s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 114s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 115s Setting up libparted2t64:amd64 (3.6-5) ... 115s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 115s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 115s Setting up linux-headers-generic (6.14.0-10.10) ... 115s Setting up libjemalloc2:amd64 (5.3.0-3) ... 115s Setting up locales (2.41-1ubuntu1) ... 115s Installing new version of config file /etc/locale.alias ... 116s Generating locales (this might take a while)... 117s en_US.UTF-8... done 117s Generation complete. 117s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 117s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 117s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 117s Installing new version of config file /etc/apparmor.d/fusermount3 ... 117s Installing new version of config file /etc/apparmor.d/lsusb ... 117s Installing new version of config file /etc/apparmor.d/openvpn ... 118s Reloading AppArmor profiles 120s Setting up libftdi1-2:amd64 (1.5-8build1) ... 120s Setting up libglib2.0-data (2.84.0-1) ... 120s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 120s Setting up libncurses6:amd64 (6.5+20250216-2) ... 120s Setting up strace (6.13+ds-1ubuntu1) ... 120s Setting up xz-utils (5.6.4-1) ... 120s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 120s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 120s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 120s Setting up udev (257.3-1ubuntu3) ... 121s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 123s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 123s Setting up libpci3:amd64 (1:3.13.0-2) ... 123s Setting up whiptail (0.52.24-4ubuntu2) ... 123s Setting up python-apt-common (2.9.9build1) ... 123s Setting up pnp.ids (0.393-3) ... 123s Setting up libnl-3-200:amd64 (3.7.0-1) ... 123s Setting up python3.13-minimal (3.13.2-2) ... 124s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 124s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 124s Setting up libc-dev-bin (2.41-1ubuntu1) ... 124s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 124s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 124s Setting up rsync (3.4.1+ds1-3) ... 125s rsync.service is a disabled or a static unit not running, not starting it. 125s Setting up python3.13-gdbm (3.13.2-2) ... 125s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 125s Setting up systemd-resolved (257.3-1ubuntu3) ... 125s Setting up initramfs-tools-bin (0.146ubuntu1) ... 125s Setting up ncurses-term (6.5+20250216-2) ... 125s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 125s Setting up libpython3.13:amd64 (3.13.2-2) ... 125s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 125s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 125s Setting up systemd-sysv (257.3-1ubuntu3) ... 125s Setting up linux-headers-virtual (6.14.0-10.10) ... 125s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 125s Setting up python3.13 (3.13.2-2) ... 126s Setting up htop (3.4.0-2) ... 126s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 128s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 128s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 128s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 128s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 128s Setting up parted (3.6-5) ... 128s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 128s Setting up python3 (3.13.2-2) ... 128s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 128s Setting up python3-markupsafe (2.1.5-1build4) ... 129s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 131s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 131s Setting up hwdata (0.393-3) ... 131s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 131s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 131s No schema files found: doing nothing. 131s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 131s Setting up linux-perf (6.14.0-10.10) ... 131s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 131s Setting up pciutils (1:3.13.0-2) ... 131s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 131s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 131s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 131s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 131s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 131s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 131s Setting up curl (8.12.1-3ubuntu1) ... 131s Setting up linux-image-virtual (6.14.0-10.10) ... 131s Setting up initramfs-tools-core (0.146ubuntu1) ... 131s Setting up linux-tools-common (6.14.0-10.10) ... 131s Setting up python3-systemd (235-1build6) ... 132s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 132s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 132s Setting up linux-image-generic (6.14.0-10.10) ... 132s Setting up python3-dbus (1.3.2-5build5) ... 132s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 132s Setting up initramfs-tools (0.146ubuntu1) ... 132s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 132s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 132s update-initramfs: deferring update (trigger activated) 132s Setting up linux-generic (6.14.0-10.10) ... 132s Setting up ubuntu-minimal (1.549) ... 132s Setting up python3-apt (2.9.9build1) ... 132s Setting up python3-bcrypt (4.2.0-2.1build1) ... 132s Setting up python3-yaml (6.0.2-1build2) ... 132s Setting up libfwupd3:amd64 (2.0.6-4) ... 132s Setting up python3-lazr.uri (1.0.6-6) ... 132s Setting up binutils (2.44-3ubuntu1) ... 132s Setting up ubuntu-standard (1.549) ... 132s Setting up cloud-init-base (25.1-0ubuntu3) ... 134s Setting up linux-virtual (6.14.0-10.10) ... 134s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 134s Setting up python3-gi (3.50.0-4build1) ... 134s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 134s Setting up fwupd (2.0.6-4) ... 134s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 134s fwupd.service is a disabled or a static unit not running, not starting it. 134s Setting up cloud-init (25.1-0ubuntu3) ... 134s Processing triggers for man-db (2.13.0-1) ... 136s Processing triggers for dbus (1.16.2-1ubuntu1) ... 136s Processing triggers for shared-mime-info (2.4-5) ... 136s Warning: program compiled against libxml 212 using older 209 136s Processing triggers for libc-bin (2.41-1ubuntu1) ... 137s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 137s /etc/kernel/postinst.d/initramfs-tools: 137s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 137s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 147s /etc/kernel/postinst.d/zz-update-grub: 147s Sourcing file `/etc/default/grub' 147s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 147s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 147s Generating grub configuration file ... 147s Found linux image: /boot/vmlinuz-6.14.0-10-generic 147s Found initrd image: /boot/initrd.img-6.14.0-10-generic 147s Found linux image: /boot/vmlinuz-6.12.0-16-generic 147s Found initrd image: /boot/initrd.img-6.12.0-16-generic 147s Found linux image: /boot/vmlinuz-6.11.0-8-generic 147s Found initrd image: /boot/initrd.img-6.11.0-8-generic 148s Warning: os-prober will not be executed to detect other bootable partitions. 148s Systems on them will not be added to the GRUB boot configuration. 148s Check GRUB_DISABLE_OS_PROBER documentation entry. 148s Adding boot menu entry for UEFI Firmware Settings ... 148s done 148s Processing triggers for initramfs-tools (0.146ubuntu1) ... 148s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 148s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 159s Reading package lists... 159s Building dependency tree... 159s Reading state information... 160s Solving dependencies... 160s The following packages will be REMOVED: 160s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 160s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 160s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 160s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 160s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 160s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 160s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 160s linux-tools-6.12.0-16-generic* 160s 0 upgraded, 0 newly installed, 18 to remove and 0 not upgraded. 160s After this operation, 545 MB disk space will be freed. 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 160s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 160s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 160s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 160s Removing libpython3.12t64:amd64 (3.12.9-1) ... 160s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 160s Removing libnsl2:amd64 (1.3.0-3build3) ... 160s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 160s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 161s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 163s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 163s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 166s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 166s /etc/kernel/postrm.d/initramfs-tools: 166s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 166s /etc/kernel/postrm.d/zz-update-grub: 166s Sourcing file `/etc/default/grub' 166s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 166s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 166s Generating grub configuration file ... 166s Found linux image: /boot/vmlinuz-6.14.0-10-generic 166s Found initrd image: /boot/initrd.img-6.14.0-10-generic 166s Found linux image: /boot/vmlinuz-6.12.0-16-generic 166s Found initrd image: /boot/initrd.img-6.12.0-16-generic 166s Warning: os-prober will not be executed to detect other bootable partitions. 166s Systems on them will not be added to the GRUB boot configuration. 166s Check GRUB_DISABLE_OS_PROBER documentation entry. 166s Adding boot menu entry for UEFI Firmware Settings ... 166s done 166s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 167s W: Removing the running kernel 167s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 167s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 167s /etc/kernel/postrm.d/initramfs-tools: 167s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 167s /etc/kernel/postrm.d/zz-update-grub: 167s Sourcing file `/etc/default/grub' 167s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 167s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 167s Generating grub configuration file ... 167s Found linux image: /boot/vmlinuz-6.14.0-10-generic 167s Found initrd image: /boot/initrd.img-6.14.0-10-generic 167s Warning: os-prober will not be executed to detect other bootable partitions. 167s Systems on them will not be added to the GRUB boot configuration. 167s Check GRUB_DISABLE_OS_PROBER documentation entry. 167s Adding boot menu entry for UEFI Firmware Settings ... 167s done 167s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 167s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 169s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 169s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 169s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 169s Processing triggers for libc-bin (2.41-1ubuntu1) ... 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 169s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 169s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 169s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 169s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 169s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 169s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 169s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 169s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 170s autopkgtest [01:41:16]: upgrading testbed (apt dist-upgrade and autopurge) 170s Reading package lists... 170s Building dependency tree... 170s Reading state information... 171s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 171s Starting 2 pkgProblemResolver with broken count: 0 171s Done 171s Entering ResolveByKeep 171s 171s Calculating upgrade... 172s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 172s Reading package lists... 172s Building dependency tree... 172s Reading state information... 172s Starting pkgProblemResolver with broken count: 0 172s Starting 2 pkgProblemResolver with broken count: 0 172s Done 173s Solving dependencies... 173s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 173s autopkgtest [01:41:19]: rebooting testbed after setup commands that affected boot 197s autopkgtest [01:41:43]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 199s autopkgtest [01:41:45]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pauvre 201s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pauvre 0.2.3-4 (dsc) [2485 B] 201s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pauvre 0.2.3-4 (tar) [61.9 kB] 201s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pauvre 0.2.3-4 (diff) [8548 B] 201s gpgv: Signature made Thu Nov 7 22:55:52 2024 UTC 201s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 201s gpgv: issuer "emollier@debian.org" 201s gpgv: Can't check signature: No public key 201s dpkg-source: warning: cannot verify inline signature for ./python-pauvre_0.2.3-4.dsc: no acceptable signature found 201s autopkgtest [01:41:47]: testing package python-pauvre version 0.2.3-4 202s autopkgtest [01:41:48]: build not needed 202s autopkgtest [01:41:48]: test run-unit-test: preparing testbed 202s Reading package lists... 203s Building dependency tree... 203s Reading state information... 203s Starting pkgProblemResolver with broken count: 0 203s Starting 2 pkgProblemResolver with broken count: 0 203s Done 203s The following NEW packages will be installed: 203s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx 203s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 203s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 203s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 203s liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libqhull-r8.0 libraqm0 203s libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 203s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 203s python-matplotlib-data python3-biopython python3-brotli python3-cairo 203s python3-contourpy python3-cycler python3-dateutil python3-decorator 203s python3-fonttools python3-freetype python3-fs python3-joblib 203s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 203s python3-mpmath python3-nanoget-examples python3-numpy python3-numpy-dev 203s python3-packaging python3-pandas python3-pandas-lib python3-pauvre 203s python3-pil python3-pil.imagetk python3-platformdirs python3-pytz 203s python3-reportlab python3-rlpycairo python3-scipy python3-sklearn 203s python3-sklearn-lib python3-sympy python3-threadpoolctl python3-tk 203s python3-tz python3-ufolib2 python3-unicodedata2 python3.12-tk python3.13-tk 203s sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xfonts-encodings 203s xfonts-utils xml-core 204s 0 upgraded, 91 newly installed, 0 to remove and 0 not upgraded. 204s Need to get 134 MB of archives. 204s After this operation, 453 MB of additional disk space will be used. 204s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-5 [148 kB] 204s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 204s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 204s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 204s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:2.2.3+ds-5 [5702 kB] 204s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB] 204s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 204s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 204s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 204s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB] 204s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 204s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 204s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-utils amd64 1:7.7+7 [97.1 kB] 204s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB] 205s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 205s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 205s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 205s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 205s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 205s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 205s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [694 kB] 205s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-8 [4824 B] 205s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.3-1 [171 kB] 205s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 205s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 205s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 205s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 205s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 205s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 205s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 205s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 205s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 205s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 205s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 205s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 205s Get:36 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 205s Get:37 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 205s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 205s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 205s Get:40 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 205s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.2-1 [17.2 kB] 205s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 205s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 205s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 205s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 205s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 205s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 205s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu2 [175 kB] 205s Get:49 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-matplotlib-data all 3.8.3-7build1 [2934 kB] 205s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.9-1 [116 kB] 205s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-tk amd64 3.13.2-2 [107 kB] 205s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tk amd64 3.13.1-1 [9770 B] 205s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 11.1.0-5build1 [9828 B] 205s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.3-2 [218 kB] 205s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 11.1.0-5build1 [583 kB] 205s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cairo amd64 1.26.1-2build2 [124 kB] 205s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-freetype all 2.5.1-1 [92.3 kB] 205s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-rlpycairo all 0.3.0-3 [9130 B] 205s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-reportlab all 4.3.1-1 [1137 kB] 206s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB] 206s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB] 206s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-biopython amd64 1.85+dfsg-2build1 [1739 kB] 206s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build4 [367 kB] 206s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.1-1build1 [218 kB] 206s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 206s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-3 [80.2 kB] 206s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 206s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB] 206s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-7 [90.8 kB] 206s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.1-1build1 [1408 kB] 206s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.4.0+dfsg-1build1 [27.0 kB] 206s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.14.1-4ubuntu2 [18.7 MB] 207s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 207s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-5 [4229 kB] 207s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 207s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build3 [360 kB] 207s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 207s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.55.3-2build1 [1536 kB] 207s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.4.2-3 [205 kB] 207s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-3build1 [55.6 kB] 207s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.2-1 [51.5 kB] 207s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib amd64 3.8.3-7build1 [17.4 MB] 208s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nanoget-examples all 1.19.3-1 [26.2 MB] 209s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pytz all 2025.1-3 [162 kB] 209s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2025.1-3 [1866 B] 209s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-8build1 [5332 kB] 210s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-8build1 [3112 kB] 210s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 210s Get:89 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-sklearn-lib amd64 1.4.2+dfsg-8 [4359 kB] 210s Get:90 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-sklearn all 1.4.2+dfsg-8 [2258 kB] 210s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pauvre all 0.2.3-4 [52.7 kB] 210s Fetched 134 MB in 7s (20.5 MB/s) 210s Selecting previously unselected package python3-numpy-dev:amd64. 211s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 211s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_amd64.deb ... 211s Unpacking python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... 211s Selecting previously unselected package libblas3:amd64. 211s Preparing to unpack .../01-libblas3_3.12.1-2_amd64.deb ... 211s Unpacking libblas3:amd64 (3.12.1-2) ... 211s Selecting previously unselected package libgfortran5:amd64. 211s Preparing to unpack .../02-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 211s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 211s Selecting previously unselected package liblapack3:amd64. 211s Preparing to unpack .../03-liblapack3_3.12.1-2_amd64.deb ... 211s Unpacking liblapack3:amd64 (3.12.1-2) ... 211s Selecting previously unselected package python3-numpy. 211s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_amd64.deb ... 211s Unpacking python3-numpy (1:2.2.3+ds-5) ... 211s Selecting previously unselected package sgml-base. 211s Preparing to unpack .../05-sgml-base_1.31_all.deb ... 211s Unpacking sgml-base (1.31) ... 211s Selecting previously unselected package libtcl8.6:amd64. 211s Preparing to unpack .../06-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 211s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 211s Selecting previously unselected package fonts-dejavu-mono. 211s Preparing to unpack .../07-fonts-dejavu-mono_2.37-8_all.deb ... 211s Unpacking fonts-dejavu-mono (2.37-8) ... 211s Selecting previously unselected package fonts-dejavu-core. 211s Preparing to unpack .../08-fonts-dejavu-core_2.37-8_all.deb ... 211s Unpacking fonts-dejavu-core (2.37-8) ... 211s Selecting previously unselected package libfontenc1:amd64. 211s Preparing to unpack .../09-libfontenc1_1%3a1.1.8-1build1_amd64.deb ... 211s Unpacking libfontenc1:amd64 (1:1.1.8-1build1) ... 211s Selecting previously unselected package x11-common. 211s Preparing to unpack .../10-x11-common_1%3a7.7+23ubuntu3_all.deb ... 211s Unpacking x11-common (1:7.7+23ubuntu3) ... 211s Selecting previously unselected package xfonts-encodings. 211s Preparing to unpack .../11-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 211s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 211s Selecting previously unselected package xfonts-utils. 211s Preparing to unpack .../12-xfonts-utils_1%3a7.7+7_amd64.deb ... 211s Unpacking xfonts-utils (1:7.7+7) ... 211s Selecting previously unselected package fonts-urw-base35. 211s Preparing to unpack .../13-fonts-urw-base35_20200910-8_all.deb ... 212s Unpacking fonts-urw-base35 (20200910-8) ... 212s Selecting previously unselected package fontconfig-config. 212s Preparing to unpack .../14-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 212s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 212s Selecting previously unselected package libfontconfig1:amd64. 212s Preparing to unpack .../15-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 212s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 212s Selecting previously unselected package libxrender1:amd64. 212s Preparing to unpack .../16-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 212s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 212s Selecting previously unselected package libxft2:amd64. 212s Preparing to unpack .../17-libxft2_2.3.6-1build1_amd64.deb ... 212s Unpacking libxft2:amd64 (2.3.6-1build1) ... 212s Selecting previously unselected package libxss1:amd64. 212s Preparing to unpack .../18-libxss1_1%3a1.2.3-1build3_amd64.deb ... 212s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 212s Selecting previously unselected package libtk8.6:amd64. 212s Preparing to unpack .../19-libtk8.6_8.6.16-1_amd64.deb ... 212s Unpacking libtk8.6:amd64 (8.6.16-1) ... 212s Selecting previously unselected package tk8.6-blt2.5. 212s Preparing to unpack .../20-tk8.6-blt2.5_2.5.3+dfsg-8_amd64.deb ... 212s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 212s Selecting previously unselected package blt. 212s Preparing to unpack .../21-blt_2.5.3+dfsg-8_amd64.deb ... 212s Unpacking blt (2.5.3+dfsg-8) ... 212s Selecting previously unselected package fonts-lyx. 212s Preparing to unpack .../22-fonts-lyx_2.4.3-1_all.deb ... 212s Unpacking fonts-lyx (2.4.3-1) ... 212s Selecting previously unselected package libpixman-1-0:amd64. 212s Preparing to unpack .../23-libpixman-1-0_0.44.0-3_amd64.deb ... 212s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 212s Selecting previously unselected package libxcb-render0:amd64. 212s Preparing to unpack .../24-libxcb-render0_1.17.0-2_amd64.deb ... 212s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 212s Selecting previously unselected package libxcb-shm0:amd64. 212s Preparing to unpack .../25-libxcb-shm0_1.17.0-2_amd64.deb ... 212s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 212s Selecting previously unselected package libcairo2:amd64. 212s Preparing to unpack .../26-libcairo2_1.18.2-2_amd64.deb ... 212s Unpacking libcairo2:amd64 (1.18.2-2) ... 212s Selecting previously unselected package libdeflate0:amd64. 212s Preparing to unpack .../27-libdeflate0_1.23-1_amd64.deb ... 212s Unpacking libdeflate0:amd64 (1.23-1) ... 212s Selecting previously unselected package libgomp1:amd64. 212s Preparing to unpack .../28-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 212s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 212s Selecting previously unselected package libgraphite2-3:amd64. 212s Preparing to unpack .../29-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 212s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 212s Selecting previously unselected package libharfbuzz0b:amd64. 212s Preparing to unpack .../30-libharfbuzz0b_10.2.0-1_amd64.deb ... 212s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 212s Selecting previously unselected package libimagequant0:amd64. 212s Preparing to unpack .../31-libimagequant0_2.18.0-1build1_amd64.deb ... 212s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 212s Selecting previously unselected package libjpeg-turbo8:amd64. 212s Preparing to unpack .../32-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 212s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 212s Selecting previously unselected package libjpeg8:amd64. 212s Preparing to unpack .../33-libjpeg8_8c-2ubuntu11_amd64.deb ... 212s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 212s Selecting previously unselected package libjs-jquery. 212s Preparing to unpack .../34-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 212s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 212s Selecting previously unselected package libjs-jquery-ui. 212s Preparing to unpack .../35-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 212s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 213s Selecting previously unselected package liblbfgsb0:amd64. 213s Preparing to unpack .../36-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 213s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 213s Selecting previously unselected package liblcms2-2:amd64. 213s Preparing to unpack .../37-liblcms2-2_2.16-2_amd64.deb ... 213s Unpacking liblcms2-2:amd64 (2.16-2) ... 213s Selecting previously unselected package liblerc4:amd64. 213s Preparing to unpack .../38-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 213s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 213s Selecting previously unselected package libqhull-r8.0:amd64. 213s Preparing to unpack .../39-libqhull-r8.0_2020.2-6build1_amd64.deb ... 213s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 213s Selecting previously unselected package libraqm0:amd64. 213s Preparing to unpack .../40-libraqm0_0.10.2-1_amd64.deb ... 213s Unpacking libraqm0:amd64 (0.10.2-1) ... 213s Selecting previously unselected package libsharpyuv0:amd64. 213s Preparing to unpack .../41-libsharpyuv0_1.5.0-0.1_amd64.deb ... 213s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 213s Selecting previously unselected package libjbig0:amd64. 213s Preparing to unpack .../42-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 213s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 213s Selecting previously unselected package libwebp7:amd64. 213s Preparing to unpack .../43-libwebp7_1.5.0-0.1_amd64.deb ... 213s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 213s Selecting previously unselected package libtiff6:amd64. 213s Preparing to unpack .../44-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 213s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 213s Selecting previously unselected package libwebpdemux2:amd64. 213s Preparing to unpack .../45-libwebpdemux2_1.5.0-0.1_amd64.deb ... 213s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ... 213s Selecting previously unselected package libwebpmux3:amd64. 213s Preparing to unpack .../46-libwebpmux3_1.5.0-0.1_amd64.deb ... 213s Unpacking libwebpmux3:amd64 (1.5.0-0.1) ... 213s Selecting previously unselected package libxslt1.1:amd64. 213s Preparing to unpack .../47-libxslt1.1_1.1.39-0exp1ubuntu2_amd64.deb ... 213s Unpacking libxslt1.1:amd64 (1.1.39-0exp1ubuntu2) ... 213s Selecting previously unselected package python-matplotlib-data. 213s Preparing to unpack .../48-python-matplotlib-data_3.8.3-7build1_all.deb ... 213s Unpacking python-matplotlib-data (3.8.3-7build1) ... 213s Selecting previously unselected package python3.12-tk. 213s Preparing to unpack .../49-python3.12-tk_3.12.9-1_amd64.deb ... 213s Unpacking python3.12-tk (3.12.9-1) ... 213s Selecting previously unselected package python3.13-tk. 213s Preparing to unpack .../50-python3.13-tk_3.13.2-2_amd64.deb ... 213s Unpacking python3.13-tk (3.13.2-2) ... 213s Selecting previously unselected package python3-tk:amd64. 213s Preparing to unpack .../51-python3-tk_3.13.1-1_amd64.deb ... 213s Unpacking python3-tk:amd64 (3.13.1-1) ... 213s Selecting previously unselected package python3-pil.imagetk:amd64. 213s Preparing to unpack .../52-python3-pil.imagetk_11.1.0-5build1_amd64.deb ... 213s Unpacking python3-pil.imagetk:amd64 (11.1.0-5build1) ... 213s Selecting previously unselected package libopenjp2-7:amd64. 213s Preparing to unpack .../53-libopenjp2-7_2.5.3-2_amd64.deb ... 213s Unpacking libopenjp2-7:amd64 (2.5.3-2) ... 213s Selecting previously unselected package python3-pil:amd64. 213s Preparing to unpack .../54-python3-pil_11.1.0-5build1_amd64.deb ... 213s Unpacking python3-pil:amd64 (11.1.0-5build1) ... 213s Selecting previously unselected package python3-cairo. 213s Preparing to unpack .../55-python3-cairo_1.26.1-2build2_amd64.deb ... 213s Unpacking python3-cairo (1.26.1-2build2) ... 213s Selecting previously unselected package python3-freetype. 213s Preparing to unpack .../56-python3-freetype_2.5.1-1_all.deb ... 213s Unpacking python3-freetype (2.5.1-1) ... 213s Selecting previously unselected package python3-rlpycairo. 213s Preparing to unpack .../57-python3-rlpycairo_0.3.0-3_all.deb ... 213s Unpacking python3-rlpycairo (0.3.0-3) ... 213s Selecting previously unselected package python3-reportlab. 213s Preparing to unpack .../58-python3-reportlab_4.3.1-1_all.deb ... 213s Unpacking python3-reportlab (4.3.1-1) ... 213s Selecting previously unselected package xml-core. 213s Preparing to unpack .../59-xml-core_0.19_all.deb ... 213s Unpacking xml-core (0.19) ... 213s Selecting previously unselected package w3c-sgml-lib. 213s Preparing to unpack .../60-w3c-sgml-lib_1.3-3_all.deb ... 213s Unpacking w3c-sgml-lib (1.3-3) ... 213s Selecting previously unselected package python3-biopython. 213s Preparing to unpack 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(1.26.1-2build2) ... 237s Setting up blt (2.5.3+dfsg-8) ... 237s Setting up python3-tk:amd64 (3.13.1-1) ... 237s Setting up python3-pil.imagetk:amd64 (11.1.0-5build1) ... 237s Setting up python3-rlpycairo (0.3.0-3) ... 238s Setting up python3-reportlab (4.3.1-1) ... 238s Setting up python3-fonttools (4.55.3-2build1) ... 239s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... 239s Setting up python3-matplotlib (3.8.3-7build1) ... 241s Processing triggers for libc-bin (2.41-1ubuntu1) ... 241s Processing triggers for man-db (2.13.0-1) ... 242s Processing triggers for sgml-base (1.31) ... 242s Setting up w3c-sgml-lib (1.3-3) ... 270s Setting up python3-biopython (1.85+dfsg-2build1) ... 271s Setting up python3-pauvre (0.2.3-4) ... 272s autopkgtest [01:42:58]: test run-unit-test: [----------------------- 272s 272s #git clone https://github.com/wdecoster/nanotest.git 272s 272s pauvre -h 272s usage: pauvre [-h] [-v] 272s {browser,custommargin,marginplot,redwood,stats,synplot} ... 272s 272s options: 272s -h, --help show this help message and exit 272s -v, --version Installed pauvre version 272s 272s [sub-commands]: 272s {browser,custommargin,marginplot,redwood,stats,synplot} 272s browser an adaptable genome browser with various track types 272s custommargin plot custom marginal histograms of tab-delimited files 272s marginplot plot a marginal histogram of a fastq file 272s redwood make a redwood plot from a bam file 272s stats outputs stats from a fastq file 272s synplot make a synteny plot from a gff file, protein 272s alignment, and partition file 272s 272s pauvre marginplot -h 273s usage: pauvre marginplot [-h] [-q] [--dpi dpi] [-f FASTQ] 273s [--fileform STRING [STRING ...]] 273s [--filt_maxlen FILT_MAXLEN] 273s [--filt_maxqual FILT_MAXQUAL] 273s [--filt_minlen FILT_MINLEN] 273s [--filt_minqual FILT_MINQUAL] [--kmerdf KMERDF] [-n] 273s [--no_timestamp] [-o BASENAME] 273s [--plot_maxlen PLOT_MAXLEN] 273s [--plot_maxqual PLOT_MAXQUAL] 273s [--plot_minlen PLOT_MINLEN] 273s [--plot_minqual PLOT_MINQUAL] [--lengthbin LENGTHBIN] 273s [--qualbin QUALBIN] [-t TITLE] [-y] 273s 273s options: 273s -h, --help show this help message and exit 273s -q, --quiet Do not output warnings to stderr 273s --dpi dpi Change the dpi from the default 600 if you need it 273s higher 273s -f, --fastq FASTQ The input FASTQ file. 273s --fileform STRING [STRING ...] 273s Which output format would you like? Def.=png 273s --filt_maxlen FILT_MAXLEN 273s This sets the max read length filter reads. 273s --filt_maxqual FILT_MAXQUAL 273s This sets the max mean read quality to filter reads. 273s --filt_minlen FILT_MINLEN 273s This sets the min read length to filter reads. 273s --filt_minqual FILT_MINQUAL 273s This sets the min mean read quality to filter reads. 273s --kmerdf KMERDF Pass the filename of a data matrix if you would like 273s to plot read length versus number of kmers in that 273s read. The data matrix is a tab-separated text file 273s with columns "id length numks and kmers", where: 273s = read id = the length of the read = 273s the number of canonical kmers in the read = a 273s list representation of kmers ie ['GAT', 'GTA'] 273s -n, --no_transparent Specify this option if you don't want a transparent 273s background. Default is on. 273s --no_timestamp Turn off time stamps in the filename output. 273s -o, --output_base_name BASENAME 273s Specify a base name for the output file(s). The input 273s file base name is the default. 273s --plot_maxlen PLOT_MAXLEN 273s Sets the maximum viewing area in the length dimension. 273s --plot_maxqual PLOT_MAXQUAL 273s Sets the maximum viewing area in the quality 273s dimension. 273s --plot_minlen PLOT_MINLEN 273s Sets the minimum viewing area in the length dimension. 273s --plot_minqual PLOT_MINQUAL 273s Sets the minimum viewing area in the quality 273s dimension. 273s --lengthbin LENGTHBIN 273s This sets the bin size to use for length. 273s --qualbin QUALBIN This sets the bin size to use for quality 273s -t, --title TITLE This sets the title for the whole plot. Use --title 273s "Crustacean's DNA read quality" if you need single 273s quote or apostrophe inside title. 273s -y, --add-yaxes Add Y-axes to both marginal histograms. 273s pauvre marginplot -f nanotest/reads.fastq.gz 275s Keeping reads that satisfy: length >= 0 and meanQual >= 0 275s # Fastq stats for reads.fastq.gz, reads >= 0bp 275s numReads: 371 275s %totalNumReads: 100.00 275s numBasepairs: 8611871 275s %totalBasepairs: 100.00 275s meanLen: 23212.590296495957 275s medianLen: 9390.0 275s minLen: 212 275s maxLen: 393431 275s N50: 60395 275s L50: 36 275s 275s # Fastq stats for reads.fastq.gz, reads >= 1000bp 275s numReads: 349 275s %totalNumReads: 94.07 275s numBasepairs: 8599196 275s %totalBasepairs: 99.85 275s meanLen: 24639.530085959886 275s medianLen: 10585.0 275s minLen: 1009 275s maxLen: 393431 275s N50: 60395 275s L50: 36 275s 275s # Fastq stats for reads.fastq.gz, reads >= 5000bp 275s numReads: 246 275s %totalNumReads: 66.31 275s numBasepairs: 8296771 275s %totalBasepairs: 96.34 275s meanLen: 33726.71138211382 275s medianLen: 17146.0 275s minLen: 5082 275s maxLen: 393431 275s N50: 61111 275s L50: 33 275s 275s # Fastq stats for reads.fastq.gz, reads >= 10000bp 275s numReads: 178 275s %totalNumReads: 47.98 275s numBasepairs: 7817574 275s %totalBasepairs: 90.78 275s meanLen: 43918.95505617977 275s medianLen: 25216.5 275s minLen: 10192 275s maxLen: 393431 275s N50: 67193 275s L50: 30 275s 275s 275s Basepairs >= bin by mean PHRED and length 275s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 275s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 275s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 275s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 275s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 275s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 275s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 275s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 275s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 275s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 275s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 275s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 275s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 275s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 275s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 275s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 275s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 275s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 275s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 275s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 275s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 275s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 275s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 275s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 275s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 275s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 275s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 275s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 275s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 275s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 275s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 275s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 275s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 275s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 275s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 275s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 275s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 275s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 275s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 275s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 275s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 275s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 275s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 275s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 275s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 275s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 275s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 275s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 275s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 275s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 275s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 275s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 275s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 275s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 275s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 275s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 275s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 275s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 275s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 275s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 275s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 275s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 275s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 275s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 275s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 275s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 275s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 275s 140000 1699582 1699582 1378920 930176 341725 0 0 0 275s 160000 1699582 1699582 1378920 930176 341725 0 0 0 275s 180000 1699582 1699582 1378920 930176 341725 0 0 0 275s 200000 1504562 1504562 1183900 735156 341725 0 0 0 275s 220000 1504562 1504562 1183900 735156 341725 0 0 0 275s 240000 1055818 1055818 735156 735156 341725 0 0 0 275s 260000 1055818 1055818 735156 735156 341725 0 0 0 275s 280000 1055818 1055818 735156 735156 341725 0 0 0 275s 300000 1055818 1055818 735156 735156 341725 0 0 0 275s 320000 1055818 1055818 735156 735156 341725 0 0 0 275s 340000 735156 735156 735156 735156 341725 0 0 0 275s 360000 393431 393431 393431 393431 0 0 0 0 275s 380000 393431 393431 393431 393431 0 0 0 0 275s 400000 0 0 0 0 0 0 0 0 275s 275s Number of reads >= bin by mean Phred+Len 275s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 275s 0 371 321 277 207 114 49 2 0 275s 250 369 320 276 206 113 48 2 0 275s 500 363 315 273 203 112 47 2 0 275s 750 355 311 270 201 111 46 2 0 275s 1000 349 307 266 197 108 44 2 0 275s 1500 341 302 263 194 106 44 2 0 275s 2000 322 284 245 179 98 42 2 0 275s 2500 308 271 233 172 94 40 2 0 275s 3000 296 264 227 167 93 40 2 0 275s 3500 282 251 215 156 84 36 2 0 275s 4000 268 237 201 144 79 36 2 0 275s 4500 256 226 192 140 77 34 2 0 275s 5000 246 216 184 134 73 33 2 0 275s 5500 236 208 176 130 72 32 1 0 275s 6000 226 199 167 121 68 30 1 0 275s 6500 215 190 160 115 65 28 0 0 275s 7000 209 185 156 113 64 28 0 0 275s 7500 203 179 151 110 62 26 0 0 275s 8000 197 174 146 106 59 25 0 0 275s 8500 191 170 142 103 57 25 0 0 275s 9000 188 167 140 101 56 24 0 0 275s 9500 182 161 137 100 55 24 0 0 275s 10000 178 157 135 99 54 24 0 0 275s 11000 169 150 129 94 51 24 0 0 275s 12000 160 142 122 90 48 22 0 0 275s 13000 144 128 111 84 46 21 0 0 275s 14000 138 123 107 80 44 19 0 0 275s 15000 134 119 103 76 41 18 0 0 275s 16000 130 116 100 74 41 18 0 0 275s 17000 123 109 94 69 38 17 0 0 275s 18000 119 105 90 65 34 16 0 0 275s 19000 115 102 87 63 33 15 0 0 275s 20000 111 98 84 61 33 15 0 0 275s 21000 105 93 80 58 30 13 0 0 275s 22000 100 90 77 56 28 12 0 0 275s 23000 96 86 73 53 26 11 0 0 275s 24000 94 84 71 51 26 11 0 0 275s 25000 90 80 68 49 25 11 0 0 275s 26000 88 78 67 49 25 11 0 0 275s 27000 84 74 64 47 23 10 0 0 275s 28000 81 71 61 46 22 9 0 0 275s 29000 76 66 57 42 21 8 0 0 275s 30000 71 61 52 38 20 8 0 0 275s 31000 69 59 50 36 19 7 0 0 275s 32000 67 57 48 34 18 7 0 0 275s 33000 66 56 47 33 18 7 0 0 275s 34000 66 56 47 33 18 7 0 0 275s 35000 64 55 46 32 18 7 0 0 275s 36000 61 52 45 31 18 7 0 0 275s 37000 58 49 44 30 17 7 0 0 275s 38000 58 49 44 30 17 7 0 0 275s 39000 57 49 44 30 17 7 0 0 275s 40000 57 49 44 30 17 7 0 0 275s 45000 52 46 42 29 17 7 0 0 275s 50000 47 42 38 25 16 6 0 0 275s 55000 43 38 34 21 13 4 0 0 275s 60000 36 31 28 18 10 3 0 0 275s 65000 32 28 25 16 9 2 0 0 275s 70000 28 25 23 14 9 2 0 0 275s 75000 23 21 19 12 7 2 0 0 275s 80000 21 19 18 11 7 2 0 0 275s 85000 20 18 17 11 7 2 0 0 275s 90000 17 16 15 10 6 2 0 0 275s 95000 17 16 15 10 6 2 0 0 275s 100000 14 13 12 8 4 1 0 0 275s 120000 10 9 8 5 2 0 0 0 275s 140000 6 6 5 3 1 0 0 0 275s 160000 6 6 5 3 1 0 0 0 275s 180000 6 6 5 3 1 0 0 0 275s 200000 5 5 4 2 1 0 0 0 275s 220000 5 5 4 2 1 0 0 0 275s 240000 3 3 2 2 1 0 0 0 275s 260000 3 3 2 2 1 0 0 0 275s 280000 3 3 2 2 1 0 0 0 275s 300000 3 3 2 2 1 0 0 0 275s 320000 3 3 2 2 1 0 0 0 275s 340000 2 2 2 2 1 0 0 0 275s 360000 1 1 1 1 0 0 0 0 275s 380000 1 1 1 1 0 0 0 0 275s 400000 0 0 0 0 0 0 0 0 276s plotting in the following window: 276s 0 <= Q-score (x-axis) <= 14.0 276s 0 <= length (y-axis) <= 223383 277s 277s pauvre marginplot -f nanotest/reads.fastq.gz -t "my title" --filt_maxlen 30000 278s Keeping reads that satisfy: length >= 0 and meanQual >= 0 and length <= 30000 280s plotting in the following window: 280s 0 <= Q-score (x-axis) <= 14.0 280s 0 <= length (y-axis) <= 29294 280s # Fastq stats for reads.fastq.gz, reads >= 0bp 280s numReads: 300 280s %totalNumReads: 100.00 280s numBasepairs: 2729844 280s %totalBasepairs: 100.00 280s meanLen: 9099.48 280s medianLen: 6204.5 280s minLen: 212 280s maxLen: 29590 280s N50: 15222 280s L50: 61 280s 280s # Fastq stats for reads.fastq.gz, reads >= 1000bp 280s numReads: 278 280s %totalNumReads: 92.67 280s numBasepairs: 2717169 280s %totalBasepairs: 99.54 280s meanLen: 9773.989208633093 280s medianLen: 6910.0 280s minLen: 1009 280s maxLen: 29590 280s N50: 15222 280s L50: 61 280s 280s # Fastq stats for reads.fastq.gz, reads >= 5000bp 280s numReads: 175 280s %totalNumReads: 58.33 280s numBasepairs: 2414744 280s %totalBasepairs: 88.46 280s meanLen: 13798.537142857143 280s medianLen: 12063.0 280s minLen: 5082 280s maxLen: 29590 280s N50: 17307 280s L50: 52 280s 280s # Fastq stats for reads.fastq.gz, reads >= 10000bp 280s numReads: 107 280s %totalNumReads: 35.67 280s numBasepairs: 1935547 280s %totalBasepairs: 70.90 280s meanLen: 18089.22429906542 280s medianLen: 16881.0 280s minLen: 10192 280s maxLen: 29590 280s N50: 20295 280s L50: 39 280s 280s 280s Basepairs >= bin by mean PHRED and length 280s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 280s 0 2729844 2468957 2119643 1556484 858972 393665 11781 0 280s 250 2729407 2468745 2119431 1556272 858760 393453 11781 0 280s 500 2726928 2466658 2118130 1554971 858291 392984 11781 0 280s 750 2721984 2464209 2116192 1553563 857617 392310 11781 0 280s 1000 2717169 2460965 2112948 1550319 855138 390635 11781 0 280s 1500 2707362 2454822 2109268 1546639 852794 390635 11781 0 280s 2000 2672887 2422266 2076712 1519238 838240 387346 11781 0 280s 2500 2641814 2393384 2050243 1503478 829208 382949 11781 0 280s 3000 2609116 2374168 2033904 1489726 826376 382949 11781 0 280s 3500 2564269 2332442 1995335 1454265 797280 370584 11781 0 280s 4000 2512068 2280241 1943134 1409238 778266 370584 11781 0 280s 4500 2462190 2234445 1905756 1392691 769886 362204 11781 0 280s 5000 2414744 2186999 1867774 1364464 750909 357457 11781 0 280s 5500 2362072 2144943 1825718 1343414 745461 352009 6333 0 280s 6000 2305333 2093889 1774664 1292360 722519 340437 6333 0 280s 6500 2236325 2037511 1730586 1254474 703348 327653 0 0 280s 7000 2195737 2003551 1703356 1240708 696434 327653 0 0 280s 7500 2152591 1960405 1667528 1219336 682352 313571 0 0 280s 8000 2106380 1921709 1628832 1188281 658986 305742 0 0 280s 8500 2056889 1888763 1595886 1163795 642742 305742 0 0 280s 9000 2030952 1862826 1578483 1146392 633884 296884 0 0 280s 9500 1974999 1806873 1550171 1136895 624387 296884 0 0 280s 10000 1935547 1767421 1530498 1126915 614407 296884 0 0 280s 11000 1840006 1693127 1467100 1074138 582873 296884 0 0 280s 12000 1736297 1600554 1386518 1027634 547567 273563 0 0 280s 13000 1534978 1424405 1249051 952931 523214 261500 0 0 280s 14000 1453681 1356704 1195131 899011 495787 234073 0 0 280s 15000 1395434 1298457 1136884 840764 451857 219542 0 0 280s 16000 1334255 1252372 1090799 809901 451857 219542 0 0 280s 17000 1217331 1135448 990860 726799 401685 202825 0 0 280s 18000 1146730 1064847 920259 656198 331084 185250 0 0 280s 19000 1072466 1008770 864182 618776 312433 166599 0 0 280s 20000 993686 929990 805391 579331 312433 166599 0 0 280s 21000 870897 827698 723394 518156 251258 126075 0 0 280s 22000 763379 763379 659075 475682 208784 104960 0 0 280s 23000 673728 673728 569424 408210 163731 82719 0 0 280s 24000 627024 627024 522720 361506 163731 82719 0 0 280s 25000 528646 528646 448453 312153 138944 82719 0 0 280s 26000 478213 478213 423121 312153 138944 82719 0 0 280s 27000 372570 372570 343949 259378 86169 56621 0 0 280s 28000 289458 289458 260837 231544 58335 28787 0 0 280s 29000 147115 147115 147115 117822 29548 0 0 0 280s 30000 0 0 0 0 0 0 0 0 280s 280s Number of reads >= bin by mean Phred+Len 280s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 280s 0 300 260 225 169 94 41 2 0 280s 250 298 259 224 168 93 40 2 0 280s 500 292 254 221 165 92 39 2 0 280s 750 284 250 218 163 91 38 2 0 280s 1000 278 246 214 159 88 36 2 0 280s 1500 270 241 211 156 86 36 2 0 280s 2000 251 223 193 141 78 34 2 0 280s 2500 237 210 181 134 74 32 2 0 280s 3000 225 203 175 129 73 32 2 0 280s 3500 211 190 163 118 64 28 2 0 280s 4000 197 176 149 106 59 28 2 0 280s 4500 185 165 140 102 57 26 2 0 280s 5000 175 155 132 96 53 25 2 0 280s 5500 165 147 124 92 52 24 1 0 280s 6000 155 138 115 83 48 22 1 0 280s 6500 144 129 108 77 45 20 0 0 280s 7000 138 124 104 75 44 20 0 0 280s 7500 132 118 99 72 42 18 0 0 280s 8000 126 113 94 68 39 17 0 0 280s 8500 120 109 90 65 37 17 0 0 280s 9000 117 106 88 63 36 16 0 0 280s 9500 111 100 85 62 35 16 0 0 280s 10000 107 96 83 61 34 16 0 0 280s 11000 98 89 77 56 31 16 0 0 280s 12000 89 81 70 52 28 14 0 0 280s 13000 73 67 59 46 26 13 0 0 280s 14000 67 62 55 42 24 11 0 0 280s 15000 63 58 51 38 21 10 0 0 280s 16000 59 55 48 36 21 10 0 0 280s 17000 52 48 42 31 18 9 0 0 280s 18000 48 44 38 27 14 8 0 0 280s 19000 44 41 35 25 13 7 0 0 280s 20000 40 37 32 23 13 7 0 0 280s 21000 34 32 28 20 10 5 0 0 280s 22000 29 29 25 18 8 4 0 0 280s 23000 25 25 21 15 6 3 0 0 280s 24000 23 23 19 13 6 3 0 0 280s 25000 19 19 16 11 5 3 0 0 280s 26000 17 17 15 11 5 3 0 0 280s 27000 13 13 12 9 3 2 0 0 280s 28000 10 10 9 8 2 1 0 0 280s 29000 5 5 5 4 1 0 0 0 280s 30000 0 0 0 0 0 0 0 0 280s 281s pauvre marginplot -f nanotest/reads.fastq.gz -y --filt_minqual 7 --fileform svg 282s Keeping reads that satisfy: length >= 0 and meanQual >= 7.0 283s # Fastq stats for reads.fastq.gz, reads >= 0bp 283s numReads: 371 283s %totalNumReads: 100.00 283s numBasepairs: 8611871 283s %totalBasepairs: 100.00 283s meanLen: 23212.590296495957 283s medianLen: 9390.0 283s minLen: 212 283s maxLen: 393431 283s N50: 60395 283s L50: 36 283s 283s # Fastq stats for reads.fastq.gz, reads >= 1000bp 283s numReads: 349 283s %totalNumReads: 94.07 283s numBasepairs: 8599196 283s %totalBasepairs: 99.85 283s meanLen: 24639.530085959886 283s medianLen: 10585.0 283s minLen: 1009 283s maxLen: 393431 283s N50: 60395 283s L50: 36 283s 283s # Fastq stats for reads.fastq.gz, reads >= 5000bp 283s numReads: 246 283s %totalNumReads: 66.31 283s numBasepairs: 8296771 283s %totalBasepairs: 96.34 283s meanLen: 33726.71138211382 283s medianLen: 17146.0 283s minLen: 5082 283s maxLen: 393431 283s N50: 61111 283s L50: 33 283s 283s # Fastq stats for reads.fastq.gz, reads >= 10000bp 283s numReads: 178 283s %totalNumReads: 47.98 283s numBasepairs: 7817574 283s %totalBasepairs: 90.78 283s meanLen: 43918.95505617977 283s medianLen: 25216.5 283s minLen: 10192 283s maxLen: 393431 283s N50: 67193 283s L50: 30 283s 283s 283s Basepairs >= bin by mean PHRED and length 283s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 283s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 283s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 283s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 283s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 283s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 283s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 283s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 283s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 283s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 283s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 283s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 283s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 283s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 283s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 283s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 283s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 283s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 283s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 283s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 283s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 283s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 283s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 283s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 283s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 283s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 283s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 283s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 283s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 283s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 283s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 283s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 283s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 283s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 283s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 283s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 283s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 283s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 283s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 283s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 283s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 283s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 283s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 283s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 283s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 283s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 283s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 283s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 283s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 283s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 283s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 283s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 283s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 283s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 283s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 283s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 283s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 283s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 283s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 283s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 283s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 283s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 283s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 283s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 283s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 283s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 283s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 283s 140000 1699582 1699582 1378920 930176 341725 0 0 0 283s 160000 1699582 1699582 1378920 930176 341725 0 0 0 283s 180000 1699582 1699582 1378920 930176 341725 0 0 0 283s 200000 1504562 1504562 1183900 735156 341725 0 0 0 283s 220000 1504562 1504562 1183900 735156 341725 0 0 0 283s 240000 1055818 1055818 735156 735156 341725 0 0 0 283s 260000 1055818 1055818 735156 735156 341725 0 0 0 283s 280000 1055818 1055818 735156 735156 341725 0 0 0 283s 300000 1055818 1055818 735156 735156 341725 0 0 0 283s 320000 1055818 1055818 735156 735156 341725 0 0 0 283s 340000 735156 735156 735156 735156 341725 0 0 0 283s 360000 393431 393431 393431 393431 0 0 0 0 283s 380000 393431 393431 393431 393431 0 0 0 0 283s 400000 0 0 0 0 0 0 0 0 283s 283s Number of reads >= bin by mean Phred+Len 283s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 283s 0 371 321 277 207 114 49 2 0 283s 250 369 320 276 206 113 48 2 0 283s 500 363 315 273 203 112 47 2 0 283s 750 355 311 270 201 111 46 2 0 283s 1000 349 307 266 197 108 44 2 0 283s 1500 341 302 263 194 106 44 2 0 283s 2000 322 284 245 179 98 42 2 0 283s 2500 308 271 233 172 94 40 2 0 283s 3000 296 264 227 167 93 40 2 0 283s 3500 282 251 215 156 84 36 2 0 283s 4000 268 237 201 144 79 36 2 0 283s 4500 256 226 192 140 77 34 2 0 283s 5000 246 216 184 134 73 33 2 0 283s 5500 236 208 176 130 72 32 1 0 283s 6000 226 199 167 121 68 30 1 0 283s 6500 215 190 160 115 65 28 0 0 283s 7000 209 185 156 113 64 28 0 0 283s 7500 203 179 151 110 62 26 0 0 283s 8000 197 174 146 106 59 25 0 0 283s 8500 191 170 142 103 57 25 0 0 283s 9000 188 167 140 101 56 24 0 0 283s 9500 182 161 137 100 55 24 0 0 283s 10000 178 157 135 99 54 24 0 0 283s 11000 169 150 129 94 51 24 0 0 283s 12000 160 142 122 90 48 22 0 0 283s 13000 144 128 111 84 46 21 0 0 283s 14000 138 123 107 80 44 19 0 0 283s 15000 134 119 103 76 41 18 0 0 283s 16000 130 116 100 74 41 18 0 0 283s 17000 123 109 94 69 38 17 0 0 283s 18000 119 105 90 65 34 16 0 0 283s 19000 115 102 87 63 33 15 0 0 283s 20000 111 98 84 61 33 15 0 0 283s 21000 105 93 80 58 30 13 0 0 283s 22000 100 90 77 56 28 12 0 0 283s 23000 96 86 73 53 26 11 0 0 283s 24000 94 84 71 51 26 11 0 0 283s 25000 90 80 68 49 25 11 0 0 283s 26000 88 78 67 49 25 11 0 0 283s 27000 84 74 64 47 23 10 0 0 283s 28000 81 71 61 46 22 9 0 0 283s 29000 76 66 57 42 21 8 0 0 283s 30000 71 61 52 38 20 8 0 0 283s 31000 69 59 50 36 19 7 0 0 283s 32000 67 57 48 34 18 7 0 0 283s 33000 66 56 47 33 18 7 0 0 283s 34000 66 56 47 33 18 7 0 0 283s 35000 64 55 46 32 18 7 0 0 283s 36000 61 52 45 31 18 7 0 0 283s 37000 58 49 44 30 17 7 0 0 283s 38000 58 49 44 30 17 7 0 0 283s 39000 57 49 44 30 17 7 0 0 283s 40000 57 49 44 30 17 7 0 0 283s 45000 52 46 42 29 17 7 0 0 283s 50000 47 42 38 25 16 6 0 0 283s 55000 43 38 34 21 13 4 0 0 283s 60000 36 31 28 18 10 3 0 0 283s 65000 32 28 25 16 9 2 0 0 283s 70000 28 25 23 14 9 2 0 0 283s 75000 23 21 19 12 7 2 0 0 283s 80000 21 19 18 11 7 2 0 0 283s 85000 20 18 17 11 7 2 0 0 283s 90000 17 16 15 10 6 2 0 0 283s 95000 17 16 15 10 6 2 0 0 283s 100000 14 13 12 8 4 1 0 0 283s 120000 10 9 8 5 2 0 0 0 283s 140000 6 6 5 3 1 0 0 0 283s 160000 6 6 5 3 1 0 0 0 283s 180000 6 6 5 3 1 0 0 0 283s 200000 5 5 4 2 1 0 0 0 283s 220000 5 5 4 2 1 0 0 0 283s 240000 3 3 2 2 1 0 0 0 283s 260000 3 3 2 2 1 0 0 0 283s 280000 3 3 2 2 1 0 0 0 283s 300000 3 3 2 2 1 0 0 0 283s 320000 3 3 2 2 1 0 0 0 283s 340000 2 2 2 2 1 0 0 0 283s 360000 1 1 1 1 0 0 0 0 283s 380000 1 1 1 1 0 0 0 0 283s 400000 0 0 0 0 0 0 0 0 284s plotting in the following window: 284s 0 <= Q-score (x-axis) <= 14.0 284s 0 <= length (y-axis) <= 223383 284s 284s 284s pauvre stats -h 284s usage: pauvre stats [-h] [-q] [-f FASTQ] [-H] [--filt_maxlen FILT_MAXLEN] 284s [--filt_maxqual FILT_MAXQUAL] [--filt_minlen FILT_MINLEN] 284s [--filt_minqual FILT_MINQUAL] 284s 284s options: 284s -h, --help show this help message and exit 284s -q, --quiet Do not output warnings to stderr 284s -f, --fastq FASTQ The input FASTQ file. 284s -H, --histogram Make a histogram of the read lengths and saves it to a 284s new file 284s --filt_maxlen FILT_MAXLEN 284s This sets the max read length filter reads. 284s --filt_maxqual FILT_MAXQUAL 284s This sets the max mean read quality to filter reads. 284s --filt_minlen FILT_MINLEN 284s This sets the min read length to filter reads. 284s --filt_minqual FILT_MINQUAL 284s This sets the min mean read quality to filter reads. 284s pauvre stats -f nanotest/reads.fastq.gz 287s # Fastq stats for reads.fastq.gz, reads >= 0bp 287s numReads: 371 287s %totalNumReads: 100.00 287s numBasepairs: 8611871 287s %totalBasepairs: 100.00 287s meanLen: 23212.590296495957 287s medianLen: 9390.0 287s minLen: 212 287s maxLen: 393431 287s N50: 60395 287s L50: 36 287s 287s # Fastq stats for reads.fastq.gz, reads >= 1000bp 287s numReads: 349 287s %totalNumReads: 94.07 287s numBasepairs: 8599196 287s %totalBasepairs: 99.85 287s meanLen: 24639.530085959886 287s medianLen: 10585.0 287s minLen: 1009 287s maxLen: 393431 287s N50: 60395 287s L50: 36 287s 287s # Fastq stats for reads.fastq.gz, reads >= 5000bp 287s numReads: 246 287s %totalNumReads: 66.31 287s numBasepairs: 8296771 287s %totalBasepairs: 96.34 287s meanLen: 33726.71138211382 287s medianLen: 17146.0 287s minLen: 5082 287s maxLen: 393431 287s N50: 61111 287s L50: 33 287s 287s # Fastq stats for reads.fastq.gz, reads >= 10000bp 287s numReads: 178 287s %totalNumReads: 47.98 287s numBasepairs: 7817574 287s %totalBasepairs: 90.78 287s meanLen: 43918.95505617977 287s medianLen: 25216.5 287s minLen: 10192 287s maxLen: 393431 287s N50: 67193 287s L50: 30 287s 287s 287s Basepairs >= bin by mean PHRED and length 287s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 287s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 287s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 287s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 287s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 287s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 287s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 287s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 287s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 287s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 287s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 287s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 287s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 287s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 287s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 287s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 287s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 287s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 287s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 287s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 287s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 287s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 287s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 287s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 287s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 287s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 287s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 287s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 287s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 287s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 287s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 287s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 287s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 287s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 287s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 287s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 287s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 287s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 287s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 287s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 287s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 287s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 287s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 287s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 287s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 287s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 287s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 287s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 287s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 287s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 287s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 287s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 287s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 287s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 287s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 287s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 287s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 287s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 287s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 287s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 287s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 287s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 287s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 287s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 287s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 287s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 287s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 287s 140000 1699582 1699582 1378920 930176 341725 0 0 0 287s 160000 1699582 1699582 1378920 930176 341725 0 0 0 287s 180000 1699582 1699582 1378920 930176 341725 0 0 0 287s 200000 1504562 1504562 1183900 735156 341725 0 0 0 287s 220000 1504562 1504562 1183900 735156 341725 0 0 0 287s 240000 1055818 1055818 735156 735156 341725 0 0 0 287s 260000 1055818 1055818 735156 735156 341725 0 0 0 287s 280000 1055818 1055818 735156 735156 341725 0 0 0 287s 300000 1055818 1055818 735156 735156 341725 0 0 0 287s 320000 1055818 1055818 735156 735156 341725 0 0 0 287s 340000 735156 735156 735156 735156 341725 0 0 0 287s 360000 393431 393431 393431 393431 0 0 0 0 287s 380000 393431 393431 393431 393431 0 0 0 0 287s 400000 0 0 0 0 0 0 0 0 287s 287s Number of reads >= bin by mean Phred+Len 287s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 287s 0 371 321 277 207 114 49 2 0 287s 250 369 320 276 206 113 48 2 0 287s 500 363 315 273 203 112 47 2 0 287s 750 355 311 270 201 111 46 2 0 287s 1000 349 307 266 197 108 44 2 0 287s 1500 341 302 263 194 106 44 2 0 287s 2000 322 284 245 179 98 42 2 0 287s 2500 308 271 233 172 94 40 2 0 287s 3000 296 264 227 167 93 40 2 0 287s 3500 282 251 215 156 84 36 2 0 287s 4000 268 237 201 144 79 36 2 0 287s 4500 256 226 192 140 77 34 2 0 287s 5000 246 216 184 134 73 33 2 0 287s 5500 236 208 176 130 72 32 1 0 287s 6000 226 199 167 121 68 30 1 0 287s 6500 215 190 160 115 65 28 0 0 287s 7000 209 185 156 113 64 28 0 0 287s 7500 203 179 151 110 62 26 0 0 287s 8000 197 174 146 106 59 25 0 0 287s 8500 191 170 142 103 57 25 0 0 287s 9000 188 167 140 101 56 24 0 0 287s 9500 182 161 137 100 55 24 0 0 287s 10000 178 157 135 99 54 24 0 0 287s 11000 169 150 129 94 51 24 0 0 287s 12000 160 142 122 90 48 22 0 0 287s 13000 144 128 111 84 46 21 0 0 287s 14000 138 123 107 80 44 19 0 0 287s 15000 134 119 103 76 41 18 0 0 287s 16000 130 116 100 74 41 18 0 0 287s 17000 123 109 94 69 38 17 0 0 287s 18000 119 105 90 65 34 16 0 0 287s 19000 115 102 87 63 33 15 0 0 287s 20000 111 98 84 61 33 15 0 0 287s 21000 105 93 80 58 30 13 0 0 287s 22000 100 90 77 56 28 12 0 0 287s 23000 96 86 73 53 26 11 0 0 287s 24000 94 84 71 51 26 11 0 0 287s 25000 90 80 68 49 25 11 0 0 287s 26000 88 78 67 49 25 11 0 0 287s 27000 84 74 64 47 23 10 0 0 287s 28000 81 71 61 46 22 9 0 0 287s 29000 76 66 57 42 21 8 0 0 287s 30000 71 61 52 38 20 8 0 0 287s 31000 69 59 50 36 19 7 0 0 287s 32000 67 57 48 34 18 7 0 0 287s 33000 66 56 47 33 18 7 0 0 287s 34000 66 56 47 33 18 7 0 0 287s 35000 64 55 46 32 18 7 0 0 287s 36000 61 52 45 31 18 7 0 0 287s 37000 58 49 44 30 17 7 0 0 287s 38000 58 49 44 30 17 7 0 0 287s 39000 57 49 44 30 17 7 0 0 287s 40000 57 49 44 30 17 7 0 0 287s 45000 52 46 42 29 17 7 0 0 287s 50000 47 42 38 25 16 6 0 0 287s 55000 43 38 34 21 13 4 0 0 287s 60000 36 31 28 18 10 3 0 0 287s 65000 32 28 25 16 9 2 0 0 287s 70000 28 25 23 14 9 2 0 0 287s 75000 23 21 19 12 7 2 0 0 287s 80000 21 19 18 11 7 2 0 0 287s 85000 20 18 17 11 7 2 0 0 287s 90000 17 16 15 10 6 2 0 0 287s 95000 17 16 15 10 6 2 0 0 287s 100000 14 13 12 8 4 1 0 0 287s 120000 10 9 8 5 2 0 0 0 287s 140000 6 6 5 3 1 0 0 0 287s 160000 6 6 5 3 1 0 0 0 287s 180000 6 6 5 3 1 0 0 0 287s 200000 5 5 4 2 1 0 0 0 287s 220000 5 5 4 2 1 0 0 0 287s 240000 3 3 2 2 1 0 0 0 287s 260000 3 3 2 2 1 0 0 0 287s 280000 3 3 2 2 1 0 0 0 287s 300000 3 3 2 2 1 0 0 0 287s 320000 3 3 2 2 1 0 0 0 287s 340000 2 2 2 2 1 0 0 0 287s 360000 1 1 1 1 0 0 0 0 287s 380000 1 1 1 1 0 0 0 0 287s 400000 0 0 0 0 0 0 0 0 287s 287s pauvre stats -f nanotest/reads.fastq.gz -H --filt_maxqual 12 289s # Fastq stats for reads.fastq.gz, reads >= 0bp 289s numReads: 371 289s %totalNumReads: 100.00 289s numBasepairs: 8611871 289s %totalBasepairs: 100.00 289s meanLen: 23212.590296495957 289s medianLen: 9390.0 289s minLen: 212 289s maxLen: 393431 289s N50: 60395 289s L50: 36 289s 289s # Fastq stats for reads.fastq.gz, reads >= 1000bp 289s numReads: 349 289s %totalNumReads: 94.07 289s numBasepairs: 8599196 289s %totalBasepairs: 99.85 289s meanLen: 24639.530085959886 289s medianLen: 10585.0 289s minLen: 1009 289s maxLen: 393431 289s N50: 60395 289s L50: 36 289s 289s # Fastq stats for reads.fastq.gz, reads >= 5000bp 289s numReads: 246 289s %totalNumReads: 66.31 289s numBasepairs: 8296771 289s %totalBasepairs: 96.34 289s meanLen: 33726.71138211382 289s medianLen: 17146.0 289s minLen: 5082 289s maxLen: 393431 289s N50: 61111 289s L50: 33 289s 289s # Fastq stats for reads.fastq.gz, reads >= 10000bp 289s numReads: 178 289s %totalNumReads: 47.98 289s numBasepairs: 7817574 289s %totalBasepairs: 90.78 289s meanLen: 43918.95505617977 289s medianLen: 25216.5 289s minLen: 10192 289s maxLen: 393431 289s N50: 67193 289s L50: 30 289s 289s 289s Basepairs >= bin by mean PHRED and length 289s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 289s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 289s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 289s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 289s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 289s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 289s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 289s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 289s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 289s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 289s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 289s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 289s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 289s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 289s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 289s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 289s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 289s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 289s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 289s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 289s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 289s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 289s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 289s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 289s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 289s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 289s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 289s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 289s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 289s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 289s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 289s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 289s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 289s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 289s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 289s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 289s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 289s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 289s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 289s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 289s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 289s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 289s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 289s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 289s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 289s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 289s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 289s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 289s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 289s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 289s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 289s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 289s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 289s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 289s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 289s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 289s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 289s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 289s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 289s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 289s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 289s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 289s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 289s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 289s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 289s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 289s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 289s 140000 1699582 1699582 1378920 930176 341725 0 0 0 289s 160000 1699582 1699582 1378920 930176 341725 0 0 0 289s 180000 1699582 1699582 1378920 930176 341725 0 0 0 289s 200000 1504562 1504562 1183900 735156 341725 0 0 0 289s 220000 1504562 1504562 1183900 735156 341725 0 0 0 289s 240000 1055818 1055818 735156 735156 341725 0 0 0 289s 260000 1055818 1055818 735156 735156 341725 0 0 0 289s 280000 1055818 1055818 735156 735156 341725 0 0 0 289s 300000 1055818 1055818 735156 735156 341725 0 0 0 289s 320000 1055818 1055818 735156 735156 341725 0 0 0 289s 340000 735156 735156 735156 735156 341725 0 0 0 289s 360000 393431 393431 393431 393431 0 0 0 0 289s 380000 393431 393431 393431 393431 0 0 0 0 289s 400000 0 0 0 0 0 0 0 0 289s 289s Number of reads >= bin by mean Phred+Len 289s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 289s 0 371 321 277 207 114 49 2 0 289s 250 369 320 276 206 113 48 2 0 289s 500 363 315 273 203 112 47 2 0 289s 750 355 311 270 201 111 46 2 0 289s 1000 349 307 266 197 108 44 2 0 289s 1500 341 302 263 194 106 44 2 0 289s 2000 322 284 245 179 98 42 2 0 289s 2500 308 271 233 172 94 40 2 0 289s 3000 296 264 227 167 93 40 2 0 289s 3500 282 251 215 156 84 36 2 0 289s 4000 268 237 201 144 79 36 2 0 289s 4500 256 226 192 140 77 34 2 0 289s 5000 246 216 184 134 73 33 2 0 289s 5500 236 208 176 130 72 32 1 0 289s 6000 226 199 167 121 68 30 1 0 289s 6500 215 190 160 115 65 28 0 0 289s 7000 209 185 156 113 64 28 0 0 289s 7500 203 179 151 110 62 26 0 0 289s 8000 197 174 146 106 59 25 0 0 289s 8500 191 170 142 103 57 25 0 0 289s 9000 188 167 140 101 56 24 0 0 289s 9500 182 161 137 100 55 24 0 0 289s 10000 178 157 135 99 54 24 0 0 289s 11000 169 150 129 94 51 24 0 0 289s 12000 160 142 122 90 48 22 0 0 289s 13000 144 128 111 84 46 21 0 0 289s 14000 138 123 107 80 44 19 0 0 289s 15000 134 119 103 76 41 18 0 0 289s 16000 130 116 100 74 41 18 0 0 289s 17000 123 109 94 69 38 17 0 0 289s 18000 119 105 90 65 34 16 0 0 289s 19000 115 102 87 63 33 15 0 0 289s 20000 111 98 84 61 33 15 0 0 289s 21000 105 93 80 58 30 13 0 0 289s 22000 100 90 77 56 28 12 0 0 289s 23000 96 86 73 53 26 11 0 0 289s 24000 94 84 71 51 26 11 0 0 289s 25000 90 80 68 49 25 11 0 0 289s 26000 88 78 67 49 25 11 0 0 289s 27000 84 74 64 47 23 10 0 0 289s 28000 81 71 61 46 22 9 0 0 289s 29000 76 66 57 42 21 8 0 0 289s 30000 71 61 52 38 20 8 0 0 289s 31000 69 59 50 36 19 7 0 0 289s 32000 67 57 48 34 18 7 0 0 289s 33000 66 56 47 33 18 7 0 0 289s 34000 66 56 47 33 18 7 0 0 289s 35000 64 55 46 32 18 7 0 0 289s 36000 61 52 45 31 18 7 0 0 289s 37000 58 49 44 30 17 7 0 0 289s 38000 58 49 44 30 17 7 0 0 289s 39000 57 49 44 30 17 7 0 0 289s 40000 57 49 44 30 17 7 0 0 289s 45000 52 46 42 29 17 7 0 0 289s 50000 47 42 38 25 16 6 0 0 289s 55000 43 38 34 21 13 4 0 0 289s 60000 36 31 28 18 10 3 0 0 289s 65000 32 28 25 16 9 2 0 0 289s 70000 28 25 23 14 9 2 0 0 289s 75000 23 21 19 12 7 2 0 0 289s 80000 21 19 18 11 7 2 0 0 289s 85000 20 18 17 11 7 2 0 0 289s 90000 17 16 15 10 6 2 0 0 289s 95000 17 16 15 10 6 2 0 0 289s 100000 14 13 12 8 4 1 0 0 289s 120000 10 9 8 5 2 0 0 0 289s 140000 6 6 5 3 1 0 0 0 289s 160000 6 6 5 3 1 0 0 0 289s 180000 6 6 5 3 1 0 0 0 289s 200000 5 5 4 2 1 0 0 0 289s 220000 5 5 4 2 1 0 0 0 289s 240000 3 3 2 2 1 0 0 0 289s 260000 3 3 2 2 1 0 0 0 289s 280000 3 3 2 2 1 0 0 0 289s 300000 3 3 2 2 1 0 0 0 289s 320000 3 3 2 2 1 0 0 0 289s 340000 2 2 2 2 1 0 0 0 289s 360000 1 1 1 1 0 0 0 0 289s 380000 1 1 1 1 0 0 0 0 289s 400000 0 0 0 0 0 0 0 0 289s 290s autopkgtest [01:43:15]: test run-unit-test: -----------------------] 290s autopkgtest [01:43:16]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 290s run-unit-test PASS 290s autopkgtest [01:43:16]: @@@@@@@@@@@@@@@@@@@@ summary 290s run-unit-test PASS 296s nova [W] Skipping flock for amd64 296s Creating nova instance adt-plucky-amd64-python-pauvre-20250316-013826-juju-7f2275-prod-proposed-migration-environment-2-4507fe4b-fd8f-4640-9a01-8debb2aacbb9 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 296s nova [W] Timed out waiting for 1e6e7b97-11a6-42bd-9d0a-7f74f4679bb9 to get deleted.