0s autopkgtest [23:17:20]: starting date and time: 2024-11-15 23:17:20+0000 0s autopkgtest [23:17:20]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [23:17:20]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.kkn61chb/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:scikit-learn --apt-upgrade python-pauvre --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=scikit-learn/1.4.2+dfsg-6build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-14.secgroup --name adt-plucky-amd64-python-pauvre-20241115-231720-juju-7f2275-prod-proposed-migration-environment-2-8f19fc90-bb21-47a3-9a56-dbe691371936 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 43s autopkgtest [23:18:03]: testbed dpkg architecture: amd64 44s autopkgtest [23:18:04]: testbed apt version: 2.9.8 44s autopkgtest [23:18:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 45s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 45s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [93.0 kB] 45s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1046 kB] 45s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 45s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 45s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [176 kB] 45s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [111 kB] 45s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 45s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [806 kB] 45s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [296 kB] 45s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9416 B] 45s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 45s Fetched 2666 kB in 1s (3194 kB/s) 45s Reading package lists... 48s Reading package lists... 48s Building dependency tree... 48s Reading state information... 48s Calculating upgrade... 48s The following NEW packages will be installed: 48s libassuan9 48s The following packages will be upgraded: 48s libgpgme11t64 libseccomp2 python3-cffi-backend 48s 3 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 48s Need to get 348 kB of archives. 48s After this operation, 361 kB of additional disk space will be used. 48s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu5 [53.3 kB] 49s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build1 [96.7 kB] 49s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.1-2 [42.9 kB] 49s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.0-2ubuntu1 [155 kB] 49s Fetched 348 kB in 0s (744 kB/s) 49s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75576 files and directories currently installed.) 49s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu5_amd64.deb ... 49s Unpacking libseccomp2:amd64 (2.5.5-1ubuntu5) over (2.5.5-1ubuntu4) ... 49s Setting up libseccomp2:amd64 (2.5.5-1ubuntu5) ... 49s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75576 files and directories currently installed.) 49s Preparing to unpack .../python3-cffi-backend_1.17.1-2build1_amd64.deb ... 49s Unpacking python3-cffi-backend:amd64 (1.17.1-2build1) over (1.17.1-2) ... 49s Selecting previously unselected package libassuan9:amd64. 49s Preparing to unpack .../libassuan9_3.0.1-2_amd64.deb ... 49s Unpacking libassuan9:amd64 (3.0.1-2) ... 49s Preparing to unpack .../libgpgme11t64_1.24.0-2ubuntu1_amd64.deb ... 49s Unpacking libgpgme11t64:amd64 (1.24.0-2ubuntu1) over (1.23.2-5ubuntu4) ... 49s Setting up libassuan9:amd64 (3.0.1-2) ... 49s Setting up libgpgme11t64:amd64 (1.24.0-2ubuntu1) ... 49s Setting up python3-cffi-backend:amd64 (1.17.1-2build1) ... 49s Processing triggers for libc-bin (2.40-1ubuntu3) ... 49s Reading package lists... 50s Building dependency tree... 50s Reading state information... 50s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 50s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 50s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 50s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 50s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 51s Reading package lists... 51s Reading package lists... 51s Building dependency tree... 51s Reading state information... 52s Calculating upgrade... 52s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 52s Reading package lists... 52s Building dependency tree... 52s Reading state information... 52s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 55s autopkgtest [23:18:15]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 55s autopkgtest [23:18:15]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pauvre 57s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pauvre 0.2.3-4 (dsc) [2485 B] 57s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pauvre 0.2.3-4 (tar) [61.9 kB] 57s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pauvre 0.2.3-4 (diff) [8548 B] 57s gpgv: Signature made Thu Nov 7 22:55:52 2024 UTC 57s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 57s gpgv: issuer "emollier@debian.org" 57s gpgv: Can't check signature: No public key 57s dpkg-source: warning: cannot verify inline signature for ./python-pauvre_0.2.3-4.dsc: no acceptable signature found 57s autopkgtest [23:18:17]: testing package python-pauvre version 0.2.3-4 57s autopkgtest [23:18:17]: build not needed 57s autopkgtest [23:18:17]: test run-unit-test: preparing testbed 59s Reading package lists... 59s Building dependency tree... 59s Reading state information... 59s Starting pkgProblemResolver with broken count: 0 59s Starting 2 pkgProblemResolver with broken count: 0 59s Done 60s The following additional packages will be installed: 60s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx 60s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 60s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 60s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 60s liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libqhull-r8.0 libraqm0 60s libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 60s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 60s python-matplotlib-data python3-appdirs python3-biopython python3-brotli 60s python3-cairo python3-contourpy python3-cycler python3-dateutil 60s python3-decorator python3-fonttools python3-freetype python3-fs 60s python3-joblib python3-kiwisolver python3-lxml python3-lz4 60s python3-matplotlib python3-mpmath python3-nanoget-examples python3-numpy 60s python3-packaging python3-pandas python3-pandas-lib python3-pauvre 60s python3-pil python3-pil.imagetk python3-reportlab python3-rlpycairo 60s python3-scipy python3-six python3-sklearn python3-sklearn-lib python3-sympy 60s python3-threadpoolctl python3-tk python3-tz python3-ufolib2 60s python3-unicodedata2 python3.12-tk sgml-base tk8.6-blt2.5 unicode-data 60s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 60s Suggested packages: 60s blt-demo fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 60s libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 bwa clustalo clustalw 60s dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons 60s python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools 60s t-coffee wise python-cycler-doc python-joblib-doc python-lxml-doc 60s cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 60s inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi 60s python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado 60s texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc 60s gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc 60s python3-statsmodels python-pil-doc pdf-viewer python3-egenix-mxtexttools 60s python-reportlab-doc rl-accel rl-renderpm python-scipy-doc python3-dap 60s python-sklearn-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg 60s python3.13-tk sgml-base-doc debhelper 60s Recommended packages: 60s javascript-common python-biopython-doc ncbi-blast+ python3-pytest 60s python3-simplejson python3-psutil python3-bs4 python3-cssselect 60s python3-html5lib python3-bottleneck python3-numexpr python3-odf 60s python3-openpyxl python3-tables python3-numba python3-olefile 60s fonts-dejavu-extra g++ | c++-compiler isympy-common 60s The following NEW packages will be installed: 60s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 60s fonts-lyx fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 60s libfontenc1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 60s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 60s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 60s libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 60s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 60s libxslt1.1 libxss1 python-matplotlib-data python3-appdirs python3-biopython 60s python3-brotli python3-cairo python3-contourpy python3-cycler 60s python3-dateutil python3-decorator python3-fonttools python3-freetype 60s python3-fs python3-joblib python3-kiwisolver python3-lxml python3-lz4 60s python3-matplotlib python3-mpmath python3-nanoget-examples python3-numpy 60s python3-packaging python3-pandas python3-pandas-lib python3-pauvre 60s python3-pil python3-pil.imagetk python3-reportlab python3-rlpycairo 60s python3-scipy python3-six python3-sklearn python3-sklearn-lib python3-sympy 60s python3-threadpoolctl python3-tk python3-tz python3-ufolib2 60s python3-unicodedata2 python3.12-tk sgml-base tk8.6-blt2.5 unicode-data 60s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 60s 0 upgraded, 90 newly installed, 0 to remove and 0 not upgraded. 60s Need to get 119 MB/119 MB of archives. 60s After this operation, 428 MB of additional disk space will be used. 60s Get:1 /tmp/autopkgtest.N3HZaj/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [728 B] 60s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB] 60s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1085 kB] 60s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 60s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 60s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB] 60s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 60s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 60s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-utils amd64 1:7.7+7 [97.1 kB] 60s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB] 61s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 61s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 61s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 61s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 61s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 61s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.15-1 [862 kB] 61s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 61s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 61s Get:19 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.2.1-1 [171 kB] 61s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 61s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 61s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 61s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 61s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 61s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 61s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 61s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 61s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 61s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.0.1-1 [540 kB] 61s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 61s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 61s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 61s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 61s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 61s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 61s Get:36 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 61s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 61s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu2 [179 kB] 61s Get:39 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 61s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 61s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 61s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 61s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 61s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 61s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 61s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 61s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu1 [169 kB] 61s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-matplotlib-data all 3.8.3-3 [2928 kB] 61s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 61s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 61s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.7-3 [116 kB] 61s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tk amd64 3.12.6-1ubuntu1 [9806 B] 61s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 10.4.0-1ubuntu1 [9394 B] 61s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu1 [184 kB] 61s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 10.4.0-1ubuntu1 [463 kB] 61s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cairo amd64 1.26.1-2 [119 kB] 62s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-freetype all 2.5.1-1 [92.3 kB] 62s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-rlpycairo all 0.3.0-3 [9130 B] 62s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-reportlab all 4.2.5-1 [1107 kB] 62s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB] 62s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB] 62s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-biopython amd64 1.84+dfsg-4 [1714 kB] 62s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 62s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.0-2build1 [271 kB] 62s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 62s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 62s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 62s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 62s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB] 62s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 62s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 62s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB] 63s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB] 63s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 63s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.0-1 [1282 kB] 63s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 63s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build2 [360 kB] 63s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 63s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 63s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.3.2-5 [206 kB] 63s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-2build1 [70.3 kB] 63s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 63s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib amd64 3.8.3-3 [4545 kB] 63s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nanoget-examples all 1.19.3-1 [26.2 MB] 65s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-5 [5087 kB] 65s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-5 [3112 kB] 65s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 65s Get:88 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-sklearn-lib amd64 1.4.2+dfsg-6build1 [6868 kB] 65s Get:89 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-sklearn all 1.4.2+dfsg-6build1 [2257 kB] 65s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pauvre all 0.2.3-4 [52.7 kB] 66s Fetched 119 MB in 6s (21.3 MB/s) 66s Selecting previously unselected package sgml-base. 66s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75582 files and directories currently installed.) 66s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 66s Unpacking sgml-base (1.31) ... 66s Selecting previously unselected package libtcl8.6:amd64. 66s Preparing to unpack .../01-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... 66s Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... 66s Selecting previously unselected package fonts-dejavu-mono. 66s Preparing to unpack .../02-fonts-dejavu-mono_2.37-8_all.deb ... 66s Unpacking fonts-dejavu-mono (2.37-8) ... 66s Selecting previously unselected package fonts-dejavu-core. 66s Preparing to unpack .../03-fonts-dejavu-core_2.37-8_all.deb ... 66s Unpacking fonts-dejavu-core (2.37-8) ... 66s Selecting previously unselected package libfontenc1:amd64. 66s Preparing to unpack .../04-libfontenc1_1%3a1.1.8-1build1_amd64.deb ... 66s Unpacking libfontenc1:amd64 (1:1.1.8-1build1) ... 66s Selecting previously unselected package x11-common. 66s Preparing to unpack .../05-x11-common_1%3a7.7+23ubuntu3_all.deb ... 66s Unpacking x11-common (1:7.7+23ubuntu3) ... 66s Selecting previously unselected package xfonts-encodings. 66s Preparing to unpack .../06-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 66s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 66s Selecting previously unselected package xfonts-utils. 66s Preparing to unpack .../07-xfonts-utils_1%3a7.7+7_amd64.deb ... 66s Unpacking xfonts-utils (1:7.7+7) ... 66s Selecting previously unselected package fonts-urw-base35. 66s Preparing to unpack .../08-fonts-urw-base35_20200910-8_all.deb ... 66s Unpacking fonts-urw-base35 (20200910-8) ... 66s Selecting previously unselected package fontconfig-config. 66s Preparing to unpack .../09-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 66s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 66s Selecting previously unselected package libfontconfig1:amd64. 66s Preparing to unpack .../10-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 66s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 66s Selecting previously unselected package libxrender1:amd64. 66s Preparing to unpack .../11-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 66s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 66s Selecting previously unselected package libxft2:amd64. 66s Preparing to unpack .../12-libxft2_2.3.6-1build1_amd64.deb ... 66s Unpacking libxft2:amd64 (2.3.6-1build1) ... 66s Selecting previously unselected package libxss1:amd64. 66s Preparing to unpack .../13-libxss1_1%3a1.2.3-1build3_amd64.deb ... 66s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 66s Selecting previously unselected package libtk8.6:amd64. 66s Preparing to unpack .../14-libtk8.6_8.6.15-1_amd64.deb ... 66s Unpacking libtk8.6:amd64 (8.6.15-1) ... 66s Selecting previously unselected package tk8.6-blt2.5. 66s Preparing to unpack .../15-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 66s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 66s Selecting previously unselected package blt. 66s Preparing to unpack .../16-blt_2.5.3+dfsg-7build1_amd64.deb ... 66s Unpacking blt (2.5.3+dfsg-7build1) ... 66s Selecting previously unselected package fonts-lyx. 66s Preparing to unpack .../17-fonts-lyx_2.4.2.1-1_all.deb ... 66s Unpacking fonts-lyx (2.4.2.1-1) ... 66s Selecting previously unselected package libblas3:amd64. 66s Preparing to unpack .../18-libblas3_3.12.0-3build2_amd64.deb ... 66s Unpacking libblas3:amd64 (3.12.0-3build2) ... 66s Selecting previously unselected package libpixman-1-0:amd64. 66s Preparing to unpack .../19-libpixman-1-0_0.44.0-3_amd64.deb ... 66s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 66s Selecting previously unselected package libxcb-render0:amd64. 66s Preparing to unpack .../20-libxcb-render0_1.17.0-2_amd64.deb ... 66s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 67s Selecting previously unselected package libxcb-shm0:amd64. 67s Preparing to unpack .../21-libxcb-shm0_1.17.0-2_amd64.deb ... 67s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 67s Selecting previously unselected package libcairo2:amd64. 67s Preparing to unpack .../22-libcairo2_1.18.2-2_amd64.deb ... 67s Unpacking libcairo2:amd64 (1.18.2-2) ... 67s Selecting previously unselected package libdeflate0:amd64. 67s Preparing to unpack .../23-libdeflate0_1.22-1_amd64.deb ... 67s Unpacking libdeflate0:amd64 (1.22-1) ... 67s Selecting previously unselected package libgfortran5:amd64. 67s Preparing to unpack .../24-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 67s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 67s Selecting previously unselected package libgomp1:amd64. 67s Preparing to unpack .../25-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 67s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 67s Selecting previously unselected package libgraphite2-3:amd64. 67s Preparing to unpack .../26-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 67s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 67s Selecting previously unselected package libharfbuzz0b:amd64. 67s Preparing to unpack .../27-libharfbuzz0b_10.0.1-1_amd64.deb ... 67s Unpacking libharfbuzz0b:amd64 (10.0.1-1) ... 67s Selecting previously unselected package libimagequant0:amd64. 67s Preparing to unpack .../28-libimagequant0_2.18.0-1build1_amd64.deb ... 67s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 67s Selecting previously unselected package libjpeg-turbo8:amd64. 67s Preparing to unpack .../29-libjpeg-turbo8_2.1.5-2ubuntu2_amd64.deb ... 67s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 67s Selecting previously unselected package libjpeg8:amd64. 67s Preparing to unpack .../30-libjpeg8_8c-2ubuntu11_amd64.deb ... 67s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 67s Selecting previously unselected package libjs-jquery. 67s Preparing to unpack .../31-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 67s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 67s Selecting previously unselected package libjs-jquery-ui. 67s Preparing to unpack .../32-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 67s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 67s Selecting previously unselected package liblapack3:amd64. 67s Preparing to unpack .../33-liblapack3_3.12.0-3build2_amd64.deb ... 67s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 67s Selecting previously unselected package liblbfgsb0:amd64. 67s Preparing to unpack .../34-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 67s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 67s Selecting previously unselected package liblcms2-2:amd64. 67s Preparing to unpack .../35-liblcms2-2_2.16-2_amd64.deb ... 67s Unpacking liblcms2-2:amd64 (2.16-2) ... 67s Selecting previously unselected package liblerc4:amd64. 67s Preparing to unpack .../36-liblerc4_4.0.0+ds-4ubuntu2_amd64.deb ... 67s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu2) ... 67s Selecting previously unselected package libqhull-r8.0:amd64. 67s Preparing to unpack .../37-libqhull-r8.0_2020.2-6build1_amd64.deb ... 67s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 67s Selecting previously unselected package libraqm0:amd64. 67s Preparing to unpack .../38-libraqm0_0.10.1-1build1_amd64.deb ... 67s Unpacking libraqm0:amd64 (0.10.1-1build1) ... 67s Selecting previously unselected package libsharpyuv0:amd64. 67s Preparing to unpack .../39-libsharpyuv0_1.4.0-0.1_amd64.deb ... 67s Unpacking libsharpyuv0:amd64 (1.4.0-0.1) ... 67s Selecting previously unselected package libjbig0:amd64. 67s Preparing to unpack .../40-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 67s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 67s Selecting previously unselected package libwebp7:amd64. 67s Preparing to unpack .../41-libwebp7_1.4.0-0.1_amd64.deb ... 67s Unpacking libwebp7:amd64 (1.4.0-0.1) ... 67s Selecting previously unselected package libtiff6:amd64. 67s Preparing to unpack .../42-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 67s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 67s Selecting previously unselected package libwebpdemux2:amd64. 67s Preparing to unpack .../43-libwebpdemux2_1.4.0-0.1_amd64.deb ... 67s Unpacking libwebpdemux2:amd64 (1.4.0-0.1) ... 67s Selecting previously unselected package libwebpmux3:amd64. 67s Preparing to unpack .../44-libwebpmux3_1.4.0-0.1_amd64.deb ... 67s Unpacking libwebpmux3:amd64 (1.4.0-0.1) ... 67s Selecting previously unselected package libxslt1.1:amd64. 67s Preparing to unpack .../45-libxslt1.1_1.1.39-0exp1ubuntu1_amd64.deb ... 67s Unpacking libxslt1.1:amd64 (1.1.39-0exp1ubuntu1) ... 67s Selecting previously unselected package python-matplotlib-data. 67s Preparing to unpack .../46-python-matplotlib-data_3.8.3-3_all.deb ... 67s Unpacking python-matplotlib-data (3.8.3-3) ... 67s Selecting previously unselected package python3-appdirs. 67s Preparing to unpack .../47-python3-appdirs_1.4.4-4_all.deb ... 67s Unpacking python3-appdirs (1.4.4-4) ... 67s Selecting previously unselected package python3-numpy. 67s Preparing to unpack .../48-python3-numpy_1%3a1.26.4+ds-11build1_amd64.deb ... 67s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 67s Selecting previously unselected package python3.12-tk. 67s Preparing to unpack .../49-python3.12-tk_3.12.7-3_amd64.deb ... 67s Unpacking python3.12-tk (3.12.7-3) ... 67s Selecting previously unselected package python3-tk:amd64. 67s Preparing to unpack .../50-python3-tk_3.12.6-1ubuntu1_amd64.deb ... 67s Unpacking python3-tk:amd64 (3.12.6-1ubuntu1) ... 67s Selecting previously unselected package python3-pil.imagetk:amd64. 67s Preparing to unpack .../51-python3-pil.imagetk_10.4.0-1ubuntu1_amd64.deb ... 67s Unpacking python3-pil.imagetk:amd64 (10.4.0-1ubuntu1) ... 67s Selecting previously unselected package libopenjp2-7:amd64. 67s Preparing to unpack .../52-libopenjp2-7_2.5.0-2ubuntu1_amd64.deb ... 67s Unpacking libopenjp2-7:amd64 (2.5.0-2ubuntu1) ... 67s Selecting previously unselected package python3-pil:amd64. 67s Preparing to unpack .../53-python3-pil_10.4.0-1ubuntu1_amd64.deb ... 67s Unpacking python3-pil:amd64 (10.4.0-1ubuntu1) ... 68s Selecting previously unselected package python3-cairo. 68s Preparing to unpack .../54-python3-cairo_1.26.1-2_amd64.deb ... 68s Unpacking python3-cairo (1.26.1-2) ... 68s Selecting previously unselected package python3-freetype. 68s Preparing to unpack .../55-python3-freetype_2.5.1-1_all.deb ... 68s Unpacking python3-freetype (2.5.1-1) ... 68s Selecting previously unselected package python3-rlpycairo. 68s Preparing to unpack .../56-python3-rlpycairo_0.3.0-3_all.deb ... 68s Unpacking python3-rlpycairo (0.3.0-3) ... 68s Selecting previously unselected package python3-reportlab. 68s Preparing to unpack .../57-python3-reportlab_4.2.5-1_all.deb ... 68s Unpacking python3-reportlab (4.2.5-1) ... 68s Selecting previously unselected package xml-core. 68s Preparing to unpack .../58-xml-core_0.19_all.deb ... 68s Unpacking xml-core (0.19) ... 68s Selecting previously unselected package w3c-sgml-lib. 68s Preparing to unpack .../59-w3c-sgml-lib_1.3-3_all.deb ... 68s Unpacking w3c-sgml-lib (1.3-3) ... 68s Selecting previously unselected package python3-biopython. 68s Preparing to unpack .../60-python3-biopython_1.84+dfsg-4_amd64.deb ... 68s Unpacking python3-biopython (1.84+dfsg-4) ... 68s Selecting previously unselected package python3-brotli. 68s Preparing to unpack .../61-python3-brotli_1.1.0-2build2_amd64.deb ... 68s Unpacking python3-brotli (1.1.0-2build2) ... 68s Selecting previously unselected package python3-contourpy. 68s Preparing to unpack .../62-python3-contourpy_1.3.0-2build1_amd64.deb ... 68s Unpacking python3-contourpy (1.3.0-2build1) ... 68s Selecting previously unselected package python3-cycler. 68s Preparing to unpack .../63-python3-cycler_0.12.1-1_all.deb ... 68s Unpacking python3-cycler (0.12.1-1) ... 68s Selecting previously unselected package python3-six. 68s Preparing to unpack .../64-python3-six_1.16.0-7_all.deb ... 68s Unpacking python3-six (1.16.0-7) ... 68s Selecting previously unselected package python3-dateutil. 68s Preparing to unpack .../65-python3-dateutil_2.9.0-2_all.deb ... 68s Unpacking python3-dateutil (2.9.0-2) ... 68s Selecting previously unselected package python3-decorator. 68s Preparing to unpack .../66-python3-decorator_5.1.1-5_all.deb ... 68s Unpacking python3-decorator (5.1.1-5) ... 68s Selecting previously unselected package python3-scipy. 68s Preparing to unpack .../67-python3-scipy_1.13.1-5_amd64.deb ... 68s Unpacking python3-scipy (1.13.1-5) ... 68s Selecting previously unselected package python3-ufolib2. 68s Preparing to unpack .../68-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 68s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 68s Selecting previously unselected package python3-mpmath. 68s Preparing to unpack .../69-python3-mpmath_1.3.0-1_all.deb ... 68s Unpacking python3-mpmath (1.3.0-1) ... 69s Selecting previously unselected package python3-sympy. 69s Preparing to unpack .../70-python3-sympy_1.13.3-1_all.deb ... 69s Unpacking python3-sympy (1.13.3-1) ... 69s Selecting previously unselected package python3-tz. 69s Preparing to unpack .../71-python3-tz_2024.1-2_all.deb ... 69s Unpacking python3-tz (2024.1-2) ... 69s Selecting previously unselected package python3-fs. 69s Preparing to unpack .../72-python3-fs_2.4.16-4_all.deb ... 69s Unpacking python3-fs (2.4.16-4) ... 69s Selecting previously unselected package python3-lxml:amd64. 69s Preparing to unpack .../73-python3-lxml_5.3.0-1_amd64.deb ... 69s Unpacking python3-lxml:amd64 (5.3.0-1) ... 69s Selecting previously unselected package python3-lz4. 69s Preparing to unpack .../74-python3-lz4_4.0.2+dfsg-1build4_amd64.deb ... 69s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 69s Selecting previously unselected package python3-unicodedata2. 69s Preparing to unpack .../75-python3-unicodedata2_15.1.0+ds-1build2_amd64.deb ... 69s Unpacking python3-unicodedata2 (15.1.0+ds-1build2) ... 69s Selecting previously unselected package unicode-data. 69s Preparing to unpack .../76-unicode-data_15.1.0-1_all.deb ... 69s Unpacking unicode-data (15.1.0-1) ... 69s Selecting previously unselected package python3-fonttools. 69s Preparing to unpack .../77-python3-fonttools_4.46.0-1build2_amd64.deb ... 69s Unpacking python3-fonttools (4.46.0-1build2) ... 69s Selecting previously unselected package python3-joblib. 69s Preparing to unpack .../78-python3-joblib_1.3.2-5_all.deb ... 69s Unpacking python3-joblib (1.3.2-5) ... 69s Selecting previously unselected package python3-kiwisolver. 69s Preparing to unpack .../79-python3-kiwisolver_1.4.7-2build1_amd64.deb ... 69s Unpacking python3-kiwisolver (1.4.7-2build1) ... 69s Selecting previously unselected package python3-packaging. 69s Preparing to unpack .../80-python3-packaging_24.1-1_all.deb ... 69s Unpacking python3-packaging (24.1-1) ... 69s Selecting previously unselected package python3-matplotlib. 69s Preparing to unpack .../81-python3-matplotlib_3.8.3-3_amd64.deb ... 69s Unpacking python3-matplotlib (3.8.3-3) ... 69s Selecting previously unselected package python3-nanoget-examples. 69s Preparing to unpack .../82-python3-nanoget-examples_1.19.3-1_all.deb ... 69s Unpacking python3-nanoget-examples (1.19.3-1) ... 70s Selecting previously unselected package python3-pandas-lib:amd64. 70s Preparing to unpack .../83-python3-pandas-lib_2.2.3+dfsg-5_amd64.deb ... 70s Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-5) ... 70s Selecting previously unselected package python3-pandas. 70s Preparing to unpack .../84-python3-pandas_2.2.3+dfsg-5_all.deb ... 70s Unpacking python3-pandas (2.2.3+dfsg-5) ... 70s Selecting previously unselected package python3-threadpoolctl. 70s Preparing to unpack .../85-python3-threadpoolctl_3.1.0-1_all.deb ... 70s Unpacking python3-threadpoolctl (3.1.0-1) ... 70s Selecting previously unselected package python3-sklearn-lib:amd64. 70s Preparing to unpack .../86-python3-sklearn-lib_1.4.2+dfsg-6build1_amd64.deb ... 70s Unpacking python3-sklearn-lib:amd64 (1.4.2+dfsg-6build1) ... 70s Selecting previously unselected package python3-sklearn. 70s Preparing to unpack .../87-python3-sklearn_1.4.2+dfsg-6build1_all.deb ... 70s Unpacking python3-sklearn (1.4.2+dfsg-6build1) ... 70s Selecting previously unselected package python3-pauvre. 70s Preparing to unpack .../88-python3-pauvre_0.2.3-4_all.deb ... 70s Unpacking python3-pauvre (0.2.3-4) ... 70s Selecting previously unselected package autopkgtest-satdep. 70s Preparing to unpack .../89-1-autopkgtest-satdep.deb ... 70s Unpacking autopkgtest-satdep (0) ... 70s 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(0) ... 119s (Reading database ... 87432 files and directories currently installed.) 119s Removing autopkgtest-satdep (0) ... 120s autopkgtest [23:19:20]: test run-unit-test: [----------------------- 120s 120s #git clone https://github.com/wdecoster/nanotest.git 120s 120s pauvre -h 120s usage: pauvre [-h] [-v] 120s {browser,custommargin,marginplot,redwood,stats,synplot} ... 120s 120s options: 120s -h, --help show this help message and exit 120s -v, --version Installed pauvre version 120s 120s [sub-commands]: 120s {browser,custommargin,marginplot,redwood,stats,synplot} 120s browser an adaptable genome browser with various track types 120s custommargin plot custom marginal histograms of tab-delimited files 120s marginplot plot a marginal histogram of a fastq file 120s redwood make a redwood plot from a bam file 120s stats outputs stats from a fastq file 120s synplot make a synteny plot from a gff file, protein 120s alignment, and partition file 120s 120s pauvre marginplot -h 120s usage: pauvre marginplot [-h] [-q] [--dpi dpi] [-f FASTQ] 120s [--fileform STRING [STRING ...]] 120s [--filt_maxlen FILT_MAXLEN] 120s [--filt_maxqual FILT_MAXQUAL] 120s [--filt_minlen FILT_MINLEN] 120s [--filt_minqual FILT_MINQUAL] [--kmerdf KMERDF] [-n] 120s [--no_timestamp] [-o BASENAME] 120s [--plot_maxlen PLOT_MAXLEN] 120s [--plot_maxqual PLOT_MAXQUAL] 120s [--plot_minlen PLOT_MINLEN] 120s [--plot_minqual PLOT_MINQUAL] [--lengthbin LENGTHBIN] 120s [--qualbin QUALBIN] [-t TITLE] [-y] 120s 120s options: 120s -h, --help show this help message and exit 120s -q, --quiet Do not output warnings to stderr 120s --dpi dpi Change the dpi from the default 600 if you need it 120s higher 120s -f FASTQ, --fastq FASTQ 120s The input FASTQ file. 120s --fileform STRING [STRING ...] 120s Which output format would you like? Def.=png 120s --filt_maxlen FILT_MAXLEN 120s This sets the max read length filter reads. 120s --filt_maxqual FILT_MAXQUAL 120s This sets the max mean read quality to filter reads. 120s --filt_minlen FILT_MINLEN 120s This sets the min read length to filter reads. 120s --filt_minqual FILT_MINQUAL 120s This sets the min mean read quality to filter reads. 120s --kmerdf KMERDF Pass the filename of a data matrix if you would like 120s to plot read length versus number of kmers in that 120s read. The data matrix is a tab-separated text file 120s with columns "id length numks and kmers", where: 120s = read id = the length of the read = 120s the number of canonical kmers in the read = a 120s list representation of kmers ie ['GAT', 'GTA'] 120s -n, --no_transparent Specify this option if you don't want a transparent 120s background. Default is on. 120s --no_timestamp Turn off time stamps in the filename output. 120s -o BASENAME, --output_base_name BASENAME 120s Specify a base name for the output file(s). The input 120s file base name is the default. 120s --plot_maxlen PLOT_MAXLEN 120s Sets the maximum viewing area in the length dimension. 120s --plot_maxqual PLOT_MAXQUAL 120s Sets the maximum viewing area in the quality 120s dimension. 120s --plot_minlen PLOT_MINLEN 120s Sets the minimum viewing area in the length dimension. 120s --plot_minqual PLOT_MINQUAL 120s Sets the minimum viewing area in the quality 120s dimension. 120s --lengthbin LENGTHBIN 120s This sets the bin size to use for length. 120s --qualbin QUALBIN This sets the bin size to use for quality 120s -t TITLE, --title TITLE 120s This sets the title for the whole plot. Use --title 120s "Crustacean's DNA read quality" if you need single 120s quote or apostrophe inside title. 120s -y, --add-yaxes Add Y-axes to both marginal histograms. 120s pauvre marginplot -f nanotest/reads.fastq.gz 122s Keeping reads that satisfy: length >= 0 and meanQual >= 0 122s # Fastq stats for reads.fastq.gz, reads >= 0bp 122s numReads: 371 122s %totalNumReads: 100.00 122s numBasepairs: 8611871 122s %totalBasepairs: 100.00 122s meanLen: 23212.590296495957 122s medianLen: 9390.0 122s minLen: 212 122s maxLen: 393431 122s N50: 60395 122s L50: 36 122s 122s # Fastq stats for reads.fastq.gz, reads >= 1000bp 122s numReads: 349 122s %totalNumReads: 94.07 122s numBasepairs: 8599196 122s %totalBasepairs: 99.85 122s meanLen: 24639.530085959886 122s medianLen: 10585.0 122s minLen: 1009 122s maxLen: 393431 122s N50: 60395 122s L50: 36 122s 122s # Fastq stats for reads.fastq.gz, reads >= 5000bp 122s numReads: 246 122s %totalNumReads: 66.31 122s numBasepairs: 8296771 122s %totalBasepairs: 96.34 122s meanLen: 33726.71138211382 122s medianLen: 17146.0 122s minLen: 5082 122s maxLen: 393431 122s N50: 61111 122s L50: 33 122s 122s # Fastq stats for reads.fastq.gz, reads >= 10000bp 122s numReads: 178 122s %totalNumReads: 47.98 122s numBasepairs: 7817574 122s %totalBasepairs: 90.78 122s meanLen: 43918.95505617977 122s medianLen: 25216.5 122s minLen: 10192 122s maxLen: 393431 122s N50: 67193 122s L50: 30 122s 122s 122s Basepairs >= bin by mean PHRED and length 122s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 122s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 122s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 122s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 122s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 122s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 122s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 122s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 122s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 122s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 122s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 122s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 122s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 122s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 122s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 122s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 122s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 122s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 122s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 122s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 122s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 122s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 122s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 122s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 122s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 122s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 122s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 122s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 122s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 122s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 122s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 122s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 122s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 122s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 122s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 122s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 122s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 122s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 122s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 122s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 122s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 122s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 122s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 122s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 122s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 122s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 122s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 122s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 122s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 122s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 122s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 122s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 122s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 122s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 122s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 122s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 122s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 122s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 122s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 122s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 122s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 122s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 122s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 122s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 122s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 122s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 122s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 122s 140000 1699582 1699582 1378920 930176 341725 0 0 0 122s 160000 1699582 1699582 1378920 930176 341725 0 0 0 122s 180000 1699582 1699582 1378920 930176 341725 0 0 0 122s 200000 1504562 1504562 1183900 735156 341725 0 0 0 122s 220000 1504562 1504562 1183900 735156 341725 0 0 0 122s 240000 1055818 1055818 735156 735156 341725 0 0 0 122s 260000 1055818 1055818 735156 735156 341725 0 0 0 122s 280000 1055818 1055818 735156 735156 341725 0 0 0 122s 300000 1055818 1055818 735156 735156 341725 0 0 0 122s 320000 1055818 1055818 735156 735156 341725 0 0 0 122s 340000 735156 735156 735156 735156 341725 0 0 0 122s 360000 393431 393431 393431 393431 0 0 0 0 122s 380000 393431 393431 393431 393431 0 0 0 0 122s 400000 0 0 0 0 0 0 0 0 122s 122s Number of reads >= bin by mean Phred+Len 122s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 122s 0 371 321 277 207 114 49 2 0 122s 250 369 320 276 206 113 48 2 0 122s 500 363 315 273 203 112 47 2 0 122s 750 355 311 270 201 111 46 2 0 122s 1000 349 307 266 197 108 44 2 0 122s 1500 341 302 263 194 106 44 2 0 122s 2000 322 284 245 179 98 42 2 0 122s 2500 308 271 233 172 94 40 2 0 122s 3000 296 264 227 167 93 40 2 0 122s 3500 282 251 215 156 84 36 2 0 122s 4000 268 237 201 144 79 36 2 0 122s 4500 256 226 192 140 77 34 2 0 122s 5000 246 216 184 134 73 33 2 0 122s 5500 236 208 176 130 72 32 1 0 122s 6000 226 199 167 121 68 30 1 0 122s 6500 215 190 160 115 65 28 0 0 122s 7000 209 185 156 113 64 28 0 0 122s 7500 203 179 151 110 62 26 0 0 122s 8000 197 174 146 106 59 25 0 0 122s 8500 191 170 142 103 57 25 0 0 122s 9000 188 167 140 101 56 24 0 0 122s 9500 182 161 137 100 55 24 0 0 122s 10000 178 157 135 99 54 24 0 0 122s 11000 169 150 129 94 51 24 0 0 122s 12000 160 142 122 90 48 22 0 0 122s 13000 144 128 111 84 46 21 0 0 122s 14000 138 123 107 80 44 19 0 0 122s 15000 134 119 103 76 41 18 0 0 122s 16000 130 116 100 74 41 18 0 0 122s 17000 123 109 94 69 38 17 0 0 122s 18000 119 105 90 65 34 16 0 0 122s 19000 115 102 87 63 33 15 0 0 122s 20000 111 98 84 61 33 15 0 0 122s 21000 105 93 80 58 30 13 0 0 122s 22000 100 90 77 56 28 12 0 0 122s 23000 96 86 73 53 26 11 0 0 122s 24000 94 84 71 51 26 11 0 0 122s 25000 90 80 68 49 25 11 0 0 122s 26000 88 78 67 49 25 11 0 0 122s 27000 84 74 64 47 23 10 0 0 122s 28000 81 71 61 46 22 9 0 0 122s 29000 76 66 57 42 21 8 0 0 122s 30000 71 61 52 38 20 8 0 0 122s 31000 69 59 50 36 19 7 0 0 122s 32000 67 57 48 34 18 7 0 0 122s 33000 66 56 47 33 18 7 0 0 122s 34000 66 56 47 33 18 7 0 0 122s 35000 64 55 46 32 18 7 0 0 122s 36000 61 52 45 31 18 7 0 0 122s 37000 58 49 44 30 17 7 0 0 122s 38000 58 49 44 30 17 7 0 0 122s 39000 57 49 44 30 17 7 0 0 122s 40000 57 49 44 30 17 7 0 0 122s 45000 52 46 42 29 17 7 0 0 122s 50000 47 42 38 25 16 6 0 0 122s 55000 43 38 34 21 13 4 0 0 122s 60000 36 31 28 18 10 3 0 0 122s 65000 32 28 25 16 9 2 0 0 122s 70000 28 25 23 14 9 2 0 0 122s 75000 23 21 19 12 7 2 0 0 122s 80000 21 19 18 11 7 2 0 0 122s 85000 20 18 17 11 7 2 0 0 122s 90000 17 16 15 10 6 2 0 0 122s 95000 17 16 15 10 6 2 0 0 122s 100000 14 13 12 8 4 1 0 0 122s 120000 10 9 8 5 2 0 0 0 122s 140000 6 6 5 3 1 0 0 0 122s 160000 6 6 5 3 1 0 0 0 122s 180000 6 6 5 3 1 0 0 0 122s 200000 5 5 4 2 1 0 0 0 122s 220000 5 5 4 2 1 0 0 0 122s 240000 3 3 2 2 1 0 0 0 122s 260000 3 3 2 2 1 0 0 0 122s 280000 3 3 2 2 1 0 0 0 122s 300000 3 3 2 2 1 0 0 0 122s 320000 3 3 2 2 1 0 0 0 122s 340000 2 2 2 2 1 0 0 0 122s 360000 1 1 1 1 0 0 0 0 122s 380000 1 1 1 1 0 0 0 0 122s 400000 0 0 0 0 0 0 0 0 123s plotting in the following window: 123s 0 <= Q-score (x-axis) <= 14.0 123s 0 <= length (y-axis) <= 223383 124s 124s pauvre marginplot -f nanotest/reads.fastq.gz -t "my title" --filt_maxlen 30000 125s Keeping reads that satisfy: length >= 0 and meanQual >= 0 and length <= 30000 126s plotting in the following window: 126s 0 <= Q-score (x-axis) <= 14.0 126s 0 <= length (y-axis) <= 29294 127s # Fastq stats for reads.fastq.gz, reads >= 0bp 127s numReads: 300 127s %totalNumReads: 100.00 127s numBasepairs: 2729844 127s %totalBasepairs: 100.00 127s meanLen: 9099.48 127s medianLen: 6204.5 127s minLen: 212 127s maxLen: 29590 127s N50: 15222 127s L50: 61 127s 127s # Fastq stats for reads.fastq.gz, reads >= 1000bp 127s numReads: 278 127s %totalNumReads: 92.67 127s numBasepairs: 2717169 127s %totalBasepairs: 99.54 127s meanLen: 9773.989208633093 127s medianLen: 6910.0 127s minLen: 1009 127s maxLen: 29590 127s N50: 15222 127s L50: 61 127s 127s # Fastq stats for reads.fastq.gz, reads >= 5000bp 127s numReads: 175 127s %totalNumReads: 58.33 127s numBasepairs: 2414744 127s %totalBasepairs: 88.46 127s meanLen: 13798.537142857143 127s medianLen: 12063.0 127s minLen: 5082 127s maxLen: 29590 127s N50: 17307 127s L50: 52 127s 127s # Fastq stats for reads.fastq.gz, reads >= 10000bp 127s numReads: 107 127s %totalNumReads: 35.67 127s numBasepairs: 1935547 127s %totalBasepairs: 70.90 127s meanLen: 18089.22429906542 127s medianLen: 16881.0 127s minLen: 10192 127s maxLen: 29590 127s N50: 20295 127s L50: 39 127s 127s 127s Basepairs >= bin by mean PHRED and length 127s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 127s 0 2729844 2468957 2119643 1556484 858972 393665 11781 0 127s 250 2729407 2468745 2119431 1556272 858760 393453 11781 0 127s 500 2726928 2466658 2118130 1554971 858291 392984 11781 0 127s 750 2721984 2464209 2116192 1553563 857617 392310 11781 0 127s 1000 2717169 2460965 2112948 1550319 855138 390635 11781 0 127s 1500 2707362 2454822 2109268 1546639 852794 390635 11781 0 127s 2000 2672887 2422266 2076712 1519238 838240 387346 11781 0 127s 2500 2641814 2393384 2050243 1503478 829208 382949 11781 0 127s 3000 2609116 2374168 2033904 1489726 826376 382949 11781 0 127s 3500 2564269 2332442 1995335 1454265 797280 370584 11781 0 127s 4000 2512068 2280241 1943134 1409238 778266 370584 11781 0 127s 4500 2462190 2234445 1905756 1392691 769886 362204 11781 0 127s 5000 2414744 2186999 1867774 1364464 750909 357457 11781 0 127s 5500 2362072 2144943 1825718 1343414 745461 352009 6333 0 127s 6000 2305333 2093889 1774664 1292360 722519 340437 6333 0 127s 6500 2236325 2037511 1730586 1254474 703348 327653 0 0 127s 7000 2195737 2003551 1703356 1240708 696434 327653 0 0 127s 7500 2152591 1960405 1667528 1219336 682352 313571 0 0 127s 8000 2106380 1921709 1628832 1188281 658986 305742 0 0 127s 8500 2056889 1888763 1595886 1163795 642742 305742 0 0 127s 9000 2030952 1862826 1578483 1146392 633884 296884 0 0 127s 9500 1974999 1806873 1550171 1136895 624387 296884 0 0 127s 10000 1935547 1767421 1530498 1126915 614407 296884 0 0 127s 11000 1840006 1693127 1467100 1074138 582873 296884 0 0 127s 12000 1736297 1600554 1386518 1027634 547567 273563 0 0 127s 13000 1534978 1424405 1249051 952931 523214 261500 0 0 127s 14000 1453681 1356704 1195131 899011 495787 234073 0 0 127s 15000 1395434 1298457 1136884 840764 451857 219542 0 0 127s 16000 1334255 1252372 1090799 809901 451857 219542 0 0 127s 17000 1217331 1135448 990860 726799 401685 202825 0 0 127s 18000 1146730 1064847 920259 656198 331084 185250 0 0 127s 19000 1072466 1008770 864182 618776 312433 166599 0 0 127s 20000 993686 929990 805391 579331 312433 166599 0 0 127s 21000 870897 827698 723394 518156 251258 126075 0 0 127s 22000 763379 763379 659075 475682 208784 104960 0 0 127s 23000 673728 673728 569424 408210 163731 82719 0 0 127s 24000 627024 627024 522720 361506 163731 82719 0 0 127s 25000 528646 528646 448453 312153 138944 82719 0 0 127s 26000 478213 478213 423121 312153 138944 82719 0 0 127s 27000 372570 372570 343949 259378 86169 56621 0 0 127s 28000 289458 289458 260837 231544 58335 28787 0 0 127s 29000 147115 147115 147115 117822 29548 0 0 0 127s 30000 0 0 0 0 0 0 0 0 127s 127s Number of reads >= bin by mean Phred+Len 127s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 127s 0 300 260 225 169 94 41 2 0 127s 250 298 259 224 168 93 40 2 0 127s 500 292 254 221 165 92 39 2 0 127s 750 284 250 218 163 91 38 2 0 127s 1000 278 246 214 159 88 36 2 0 127s 1500 270 241 211 156 86 36 2 0 127s 2000 251 223 193 141 78 34 2 0 127s 2500 237 210 181 134 74 32 2 0 127s 3000 225 203 175 129 73 32 2 0 127s 3500 211 190 163 118 64 28 2 0 127s 4000 197 176 149 106 59 28 2 0 127s 4500 185 165 140 102 57 26 2 0 127s 5000 175 155 132 96 53 25 2 0 127s 5500 165 147 124 92 52 24 1 0 127s 6000 155 138 115 83 48 22 1 0 127s 6500 144 129 108 77 45 20 0 0 127s 7000 138 124 104 75 44 20 0 0 127s 7500 132 118 99 72 42 18 0 0 127s 8000 126 113 94 68 39 17 0 0 127s 8500 120 109 90 65 37 17 0 0 127s 9000 117 106 88 63 36 16 0 0 127s 9500 111 100 85 62 35 16 0 0 127s 10000 107 96 83 61 34 16 0 0 127s 11000 98 89 77 56 31 16 0 0 127s 12000 89 81 70 52 28 14 0 0 127s 13000 73 67 59 46 26 13 0 0 127s 14000 67 62 55 42 24 11 0 0 127s 15000 63 58 51 38 21 10 0 0 127s 16000 59 55 48 36 21 10 0 0 127s 17000 52 48 42 31 18 9 0 0 127s 18000 48 44 38 27 14 8 0 0 127s 19000 44 41 35 25 13 7 0 0 127s 20000 40 37 32 23 13 7 0 0 127s 21000 34 32 28 20 10 5 0 0 127s 22000 29 29 25 18 8 4 0 0 127s 23000 25 25 21 15 6 3 0 0 127s 24000 23 23 19 13 6 3 0 0 127s 25000 19 19 16 11 5 3 0 0 127s 26000 17 17 15 11 5 3 0 0 127s 27000 13 13 12 9 3 2 0 0 127s 28000 10 10 9 8 2 1 0 0 127s 29000 5 5 5 4 1 0 0 0 127s 30000 0 0 0 0 0 0 0 0 127s 127s pauvre marginplot -f nanotest/reads.fastq.gz -y --filt_minqual 7 --fileform svg 128s Keeping reads that satisfy: length >= 0 and meanQual >= 7.0 129s # Fastq stats for reads.fastq.gz, reads >= 0bp 129s numReads: 371 129s %totalNumReads: 100.00 129s numBasepairs: 8611871 129s %totalBasepairs: 100.00 129s meanLen: 23212.590296495957 129s medianLen: 9390.0 129s minLen: 212 129s maxLen: 393431 129s N50: 60395 129s L50: 36 129s 129s # Fastq stats for reads.fastq.gz, reads >= 1000bp 129s numReads: 349 129s %totalNumReads: 94.07 129s numBasepairs: 8599196 129s %totalBasepairs: 99.85 129s meanLen: 24639.530085959886 129s medianLen: 10585.0 129s minLen: 1009 129s maxLen: 393431 129s N50: 60395 129s L50: 36 129s 129s # Fastq stats for reads.fastq.gz, reads >= 5000bp 129s numReads: 246 129s %totalNumReads: 66.31 129s numBasepairs: 8296771 129s %totalBasepairs: 96.34 129s meanLen: 33726.71138211382 129s medianLen: 17146.0 129s minLen: 5082 129s maxLen: 393431 129s N50: 61111 129s L50: 33 129s 129s # Fastq stats for reads.fastq.gz, reads >= 10000bp 129s numReads: 178 129s %totalNumReads: 47.98 129s numBasepairs: 7817574 129s %totalBasepairs: 90.78 129s meanLen: 43918.95505617977 129s medianLen: 25216.5 129s minLen: 10192 129s maxLen: 393431 129s N50: 67193 129s L50: 30 129s 129s 129s Basepairs >= bin by mean PHRED and length 129s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 129s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 129s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 129s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 129s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 129s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 129s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 129s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 129s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 129s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 129s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 129s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 129s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 129s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 129s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 129s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 129s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 129s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 129s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 129s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 129s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 129s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 129s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 129s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 129s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 129s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 129s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 129s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 129s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 129s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 129s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 129s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 129s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 129s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 129s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 129s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 129s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 129s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 129s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 129s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 129s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 129s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 129s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 129s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 129s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 129s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 129s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 129s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 129s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 129s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 129s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 129s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 129s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 129s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 129s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 129s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 129s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 129s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 129s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 129s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 129s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 129s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 129s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 129s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 129s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 129s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 129s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 129s 140000 1699582 1699582 1378920 930176 341725 0 0 0 129s 160000 1699582 1699582 1378920 930176 341725 0 0 0 129s 180000 1699582 1699582 1378920 930176 341725 0 0 0 129s 200000 1504562 1504562 1183900 735156 341725 0 0 0 129s 220000 1504562 1504562 1183900 735156 341725 0 0 0 129s 240000 1055818 1055818 735156 735156 341725 0 0 0 129s 260000 1055818 1055818 735156 735156 341725 0 0 0 129s 280000 1055818 1055818 735156 735156 341725 0 0 0 129s 300000 1055818 1055818 735156 735156 341725 0 0 0 129s 320000 1055818 1055818 735156 735156 341725 0 0 0 129s 340000 735156 735156 735156 735156 341725 0 0 0 129s 360000 393431 393431 393431 393431 0 0 0 0 129s 380000 393431 393431 393431 393431 0 0 0 0 129s 400000 0 0 0 0 0 0 0 0 129s 129s Number of reads >= bin by mean Phred+Len 129s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 129s 0 371 321 277 207 114 49 2 0 129s 250 369 320 276 206 113 48 2 0 129s 500 363 315 273 203 112 47 2 0 129s 750 355 311 270 201 111 46 2 0 129s 1000 349 307 266 197 108 44 2 0 129s 1500 341 302 263 194 106 44 2 0 129s 2000 322 284 245 179 98 42 2 0 129s 2500 308 271 233 172 94 40 2 0 129s 3000 296 264 227 167 93 40 2 0 129s 3500 282 251 215 156 84 36 2 0 129s 4000 268 237 201 144 79 36 2 0 129s 4500 256 226 192 140 77 34 2 0 129s 5000 246 216 184 134 73 33 2 0 129s 5500 236 208 176 130 72 32 1 0 129s 6000 226 199 167 121 68 30 1 0 129s 6500 215 190 160 115 65 28 0 0 129s 7000 209 185 156 113 64 28 0 0 129s 7500 203 179 151 110 62 26 0 0 129s 8000 197 174 146 106 59 25 0 0 129s 8500 191 170 142 103 57 25 0 0 129s 9000 188 167 140 101 56 24 0 0 129s 9500 182 161 137 100 55 24 0 0 129s 10000 178 157 135 99 54 24 0 0 129s 11000 169 150 129 94 51 24 0 0 129s 12000 160 142 122 90 48 22 0 0 129s 13000 144 128 111 84 46 21 0 0 129s 14000 138 123 107 80 44 19 0 0 129s 15000 134 119 103 76 41 18 0 0 129s 16000 130 116 100 74 41 18 0 0 129s 17000 123 109 94 69 38 17 0 0 129s 18000 119 105 90 65 34 16 0 0 129s 19000 115 102 87 63 33 15 0 0 129s 20000 111 98 84 61 33 15 0 0 129s 21000 105 93 80 58 30 13 0 0 129s 22000 100 90 77 56 28 12 0 0 129s 23000 96 86 73 53 26 11 0 0 129s 24000 94 84 71 51 26 11 0 0 129s 25000 90 80 68 49 25 11 0 0 129s 26000 88 78 67 49 25 11 0 0 129s 27000 84 74 64 47 23 10 0 0 129s 28000 81 71 61 46 22 9 0 0 129s 29000 76 66 57 42 21 8 0 0 129s 30000 71 61 52 38 20 8 0 0 129s 31000 69 59 50 36 19 7 0 0 129s 32000 67 57 48 34 18 7 0 0 129s 33000 66 56 47 33 18 7 0 0 129s 34000 66 56 47 33 18 7 0 0 129s 35000 64 55 46 32 18 7 0 0 129s 36000 61 52 45 31 18 7 0 0 129s 37000 58 49 44 30 17 7 0 0 129s 38000 58 49 44 30 17 7 0 0 129s 39000 57 49 44 30 17 7 0 0 129s 40000 57 49 44 30 17 7 0 0 129s 45000 52 46 42 29 17 7 0 0 129s 50000 47 42 38 25 16 6 0 0 129s 55000 43 38 34 21 13 4 0 0 129s 60000 36 31 28 18 10 3 0 0 129s 65000 32 28 25 16 9 2 0 0 129s 70000 28 25 23 14 9 2 0 0 129s 75000 23 21 19 12 7 2 0 0 129s 80000 21 19 18 11 7 2 0 0 129s 85000 20 18 17 11 7 2 0 0 129s 90000 17 16 15 10 6 2 0 0 129s 95000 17 16 15 10 6 2 0 0 129s 100000 14 13 12 8 4 1 0 0 129s 120000 10 9 8 5 2 0 0 0 129s 140000 6 6 5 3 1 0 0 0 129s 160000 6 6 5 3 1 0 0 0 129s 180000 6 6 5 3 1 0 0 0 129s 200000 5 5 4 2 1 0 0 0 129s 220000 5 5 4 2 1 0 0 0 129s 240000 3 3 2 2 1 0 0 0 129s 260000 3 3 2 2 1 0 0 0 129s 280000 3 3 2 2 1 0 0 0 129s 300000 3 3 2 2 1 0 0 0 129s 320000 3 3 2 2 1 0 0 0 129s 340000 2 2 2 2 1 0 0 0 129s 360000 1 1 1 1 0 0 0 0 129s 380000 1 1 1 1 0 0 0 0 129s 400000 0 0 0 0 0 0 0 0 129s plotting in the following window: 129s 0 <= Q-score (x-axis) <= 14.0 129s 0 <= length (y-axis) <= 223383 130s 130s 130s pauvre stats -h 130s usage: pauvre stats [-h] [-q] [-f FASTQ] [-H] [--filt_maxlen FILT_MAXLEN] 130s [--filt_maxqual FILT_MAXQUAL] [--filt_minlen FILT_MINLEN] 130s [--filt_minqual FILT_MINQUAL] 130s 130s options: 130s -h, --help show this help message and exit 130s -q, --quiet Do not output warnings to stderr 130s -f FASTQ, --fastq FASTQ 130s The input FASTQ file. 130s -H, --histogram Make a histogram of the read lengths and saves it to a 130s new file 130s --filt_maxlen FILT_MAXLEN 130s This sets the max read length filter reads. 130s --filt_maxqual FILT_MAXQUAL 130s This sets the max mean read quality to filter reads. 130s --filt_minlen FILT_MINLEN 130s This sets the min read length to filter reads. 130s --filt_minqual FILT_MINQUAL 130s This sets the min mean read quality to filter reads. 130s pauvre stats -f nanotest/reads.fastq.gz 132s # Fastq stats for reads.fastq.gz, reads >= 0bp 132s numReads: 371 132s %totalNumReads: 100.00 132s numBasepairs: 8611871 132s %totalBasepairs: 100.00 132s meanLen: 23212.590296495957 132s medianLen: 9390.0 132s minLen: 212 132s maxLen: 393431 132s N50: 60395 132s L50: 36 132s 132s # Fastq stats for reads.fastq.gz, reads >= 1000bp 132s numReads: 349 132s %totalNumReads: 94.07 132s numBasepairs: 8599196 132s %totalBasepairs: 99.85 132s meanLen: 24639.530085959886 132s medianLen: 10585.0 132s minLen: 1009 132s maxLen: 393431 132s N50: 60395 132s L50: 36 132s 132s # Fastq stats for reads.fastq.gz, reads >= 5000bp 132s numReads: 246 132s %totalNumReads: 66.31 132s numBasepairs: 8296771 132s %totalBasepairs: 96.34 132s meanLen: 33726.71138211382 132s medianLen: 17146.0 132s minLen: 5082 132s maxLen: 393431 132s N50: 61111 132s L50: 33 132s 132s # Fastq stats for reads.fastq.gz, reads >= 10000bp 132s numReads: 178 132s %totalNumReads: 47.98 132s numBasepairs: 7817574 132s %totalBasepairs: 90.78 132s meanLen: 43918.95505617977 132s medianLen: 25216.5 132s minLen: 10192 132s maxLen: 393431 132s N50: 67193 132s L50: 30 132s 132s 132s Basepairs >= bin by mean PHRED and length 132s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 132s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 132s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 132s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 132s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 132s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 132s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 132s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 132s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 132s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 132s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 132s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 132s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 132s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 132s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 132s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 132s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 132s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 132s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 132s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 132s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 132s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 132s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 132s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 132s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 132s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 132s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 132s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 132s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 132s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 132s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 132s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 132s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 132s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 132s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 132s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 132s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 132s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 132s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 132s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 132s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 132s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 132s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 132s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 132s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 132s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 132s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 132s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 132s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 132s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 132s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 132s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 132s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 132s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 132s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 132s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 132s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 132s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 132s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 132s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 132s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 132s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 132s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 132s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 132s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 132s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 132s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 132s 140000 1699582 1699582 1378920 930176 341725 0 0 0 132s 160000 1699582 1699582 1378920 930176 341725 0 0 0 132s 180000 1699582 1699582 1378920 930176 341725 0 0 0 132s 200000 1504562 1504562 1183900 735156 341725 0 0 0 132s 220000 1504562 1504562 1183900 735156 341725 0 0 0 132s 240000 1055818 1055818 735156 735156 341725 0 0 0 132s 260000 1055818 1055818 735156 735156 341725 0 0 0 132s 280000 1055818 1055818 735156 735156 341725 0 0 0 132s 300000 1055818 1055818 735156 735156 341725 0 0 0 132s 320000 1055818 1055818 735156 735156 341725 0 0 0 132s 340000 735156 735156 735156 735156 341725 0 0 0 132s 360000 393431 393431 393431 393431 0 0 0 0 132s 380000 393431 393431 393431 393431 0 0 0 0 132s 400000 0 0 0 0 0 0 0 0 132s 132s Number of reads >= bin by mean Phred+Len 132s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 132s 0 371 321 277 207 114 49 2 0 132s 250 369 320 276 206 113 48 2 0 132s 500 363 315 273 203 112 47 2 0 132s 750 355 311 270 201 111 46 2 0 132s 1000 349 307 266 197 108 44 2 0 132s 1500 341 302 263 194 106 44 2 0 132s 2000 322 284 245 179 98 42 2 0 132s 2500 308 271 233 172 94 40 2 0 132s 3000 296 264 227 167 93 40 2 0 132s 3500 282 251 215 156 84 36 2 0 132s 4000 268 237 201 144 79 36 2 0 132s 4500 256 226 192 140 77 34 2 0 132s 5000 246 216 184 134 73 33 2 0 132s 5500 236 208 176 130 72 32 1 0 132s 6000 226 199 167 121 68 30 1 0 132s 6500 215 190 160 115 65 28 0 0 132s 7000 209 185 156 113 64 28 0 0 132s 7500 203 179 151 110 62 26 0 0 132s 8000 197 174 146 106 59 25 0 0 132s 8500 191 170 142 103 57 25 0 0 132s 9000 188 167 140 101 56 24 0 0 132s 9500 182 161 137 100 55 24 0 0 132s 10000 178 157 135 99 54 24 0 0 132s 11000 169 150 129 94 51 24 0 0 132s 12000 160 142 122 90 48 22 0 0 132s 13000 144 128 111 84 46 21 0 0 132s 14000 138 123 107 80 44 19 0 0 132s 15000 134 119 103 76 41 18 0 0 132s 16000 130 116 100 74 41 18 0 0 132s 17000 123 109 94 69 38 17 0 0 132s 18000 119 105 90 65 34 16 0 0 132s 19000 115 102 87 63 33 15 0 0 132s 20000 111 98 84 61 33 15 0 0 132s 21000 105 93 80 58 30 13 0 0 132s 22000 100 90 77 56 28 12 0 0 132s 23000 96 86 73 53 26 11 0 0 132s 24000 94 84 71 51 26 11 0 0 132s 25000 90 80 68 49 25 11 0 0 132s 26000 88 78 67 49 25 11 0 0 132s 27000 84 74 64 47 23 10 0 0 132s 28000 81 71 61 46 22 9 0 0 132s 29000 76 66 57 42 21 8 0 0 132s 30000 71 61 52 38 20 8 0 0 132s 31000 69 59 50 36 19 7 0 0 132s 32000 67 57 48 34 18 7 0 0 132s 33000 66 56 47 33 18 7 0 0 132s 34000 66 56 47 33 18 7 0 0 132s 35000 64 55 46 32 18 7 0 0 132s 36000 61 52 45 31 18 7 0 0 132s 37000 58 49 44 30 17 7 0 0 132s 38000 58 49 44 30 17 7 0 0 132s 39000 57 49 44 30 17 7 0 0 132s 40000 57 49 44 30 17 7 0 0 132s 45000 52 46 42 29 17 7 0 0 132s 50000 47 42 38 25 16 6 0 0 132s 55000 43 38 34 21 13 4 0 0 132s 60000 36 31 28 18 10 3 0 0 132s 65000 32 28 25 16 9 2 0 0 132s 70000 28 25 23 14 9 2 0 0 132s 75000 23 21 19 12 7 2 0 0 132s 80000 21 19 18 11 7 2 0 0 132s 85000 20 18 17 11 7 2 0 0 132s 90000 17 16 15 10 6 2 0 0 132s 95000 17 16 15 10 6 2 0 0 132s 100000 14 13 12 8 4 1 0 0 132s 120000 10 9 8 5 2 0 0 0 132s 140000 6 6 5 3 1 0 0 0 132s 160000 6 6 5 3 1 0 0 0 132s 180000 6 6 5 3 1 0 0 0 132s 200000 5 5 4 2 1 0 0 0 132s 220000 5 5 4 2 1 0 0 0 132s 240000 3 3 2 2 1 0 0 0 132s 260000 3 3 2 2 1 0 0 0 132s 280000 3 3 2 2 1 0 0 0 132s 300000 3 3 2 2 1 0 0 0 132s 320000 3 3 2 2 1 0 0 0 132s 340000 2 2 2 2 1 0 0 0 132s 360000 1 1 1 1 0 0 0 0 132s 380000 1 1 1 1 0 0 0 0 132s 400000 0 0 0 0 0 0 0 0 132s 132s pauvre stats -f nanotest/reads.fastq.gz -H --filt_maxqual 12 134s # Fastq stats for reads.fastq.gz, reads >= 0bp 134s numReads: 371 134s %totalNumReads: 100.00 134s numBasepairs: 8611871 134s %totalBasepairs: 100.00 134s meanLen: 23212.590296495957 134s medianLen: 9390.0 134s minLen: 212 134s maxLen: 393431 134s N50: 60395 134s L50: 36 134s 134s # Fastq stats for reads.fastq.gz, reads >= 1000bp 134s numReads: 349 134s %totalNumReads: 94.07 134s numBasepairs: 8599196 134s %totalBasepairs: 99.85 134s meanLen: 24639.530085959886 134s medianLen: 10585.0 134s minLen: 1009 134s maxLen: 393431 134s N50: 60395 134s L50: 36 134s 134s # Fastq stats for reads.fastq.gz, reads >= 5000bp 134s numReads: 246 134s %totalNumReads: 66.31 134s numBasepairs: 8296771 134s %totalBasepairs: 96.34 134s meanLen: 33726.71138211382 134s medianLen: 17146.0 134s minLen: 5082 134s maxLen: 393431 134s N50: 61111 134s L50: 33 134s 134s # Fastq stats for reads.fastq.gz, reads >= 10000bp 134s numReads: 178 134s %totalNumReads: 47.98 134s numBasepairs: 7817574 134s %totalBasepairs: 90.78 134s meanLen: 43918.95505617977 134s medianLen: 25216.5 134s minLen: 10192 134s maxLen: 393431 134s N50: 67193 134s L50: 30 134s 134s 134s Basepairs >= bin by mean PHRED and length 134s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 134s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 134s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 134s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 134s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 134s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 134s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 134s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 134s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 134s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 134s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 134s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 134s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 134s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 134s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 134s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 134s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 134s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 134s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 134s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 134s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 134s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 134s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 134s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 134s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 134s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 134s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 134s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 134s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 134s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 134s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 134s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 134s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 134s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 134s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 134s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 134s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 134s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 134s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 134s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 134s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 134s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 134s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 134s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 134s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 134s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 134s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 134s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 134s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 134s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 134s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 134s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 134s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 134s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 134s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 134s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 134s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 134s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 134s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 134s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 134s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 134s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 134s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 134s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 134s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 134s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 134s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 134s 140000 1699582 1699582 1378920 930176 341725 0 0 0 134s 160000 1699582 1699582 1378920 930176 341725 0 0 0 134s 180000 1699582 1699582 1378920 930176 341725 0 0 0 134s 200000 1504562 1504562 1183900 735156 341725 0 0 0 134s 220000 1504562 1504562 1183900 735156 341725 0 0 0 134s 240000 1055818 1055818 735156 735156 341725 0 0 0 134s 260000 1055818 1055818 735156 735156 341725 0 0 0 134s 280000 1055818 1055818 735156 735156 341725 0 0 0 134s 300000 1055818 1055818 735156 735156 341725 0 0 0 134s 320000 1055818 1055818 735156 735156 341725 0 0 0 134s 340000 735156 735156 735156 735156 341725 0 0 0 134s 360000 393431 393431 393431 393431 0 0 0 0 134s 380000 393431 393431 393431 393431 0 0 0 0 134s 400000 0 0 0 0 0 0 0 0 134s 134s Number of reads >= bin by mean Phred+Len 134s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 134s 0 371 321 277 207 114 49 2 0 134s 250 369 320 276 206 113 48 2 0 134s 500 363 315 273 203 112 47 2 0 134s 750 355 311 270 201 111 46 2 0 134s 1000 349 307 266 197 108 44 2 0 134s 1500 341 302 263 194 106 44 2 0 134s 2000 322 284 245 179 98 42 2 0 134s 2500 308 271 233 172 94 40 2 0 134s 3000 296 264 227 167 93 40 2 0 134s 3500 282 251 215 156 84 36 2 0 134s 4000 268 237 201 144 79 36 2 0 134s 4500 256 226 192 140 77 34 2 0 134s 5000 246 216 184 134 73 33 2 0 134s 5500 236 208 176 130 72 32 1 0 134s 6000 226 199 167 121 68 30 1 0 134s 6500 215 190 160 115 65 28 0 0 134s 7000 209 185 156 113 64 28 0 0 134s 7500 203 179 151 110 62 26 0 0 134s 8000 197 174 146 106 59 25 0 0 134s 8500 191 170 142 103 57 25 0 0 134s 9000 188 167 140 101 56 24 0 0 134s 9500 182 161 137 100 55 24 0 0 134s 10000 178 157 135 99 54 24 0 0 134s 11000 169 150 129 94 51 24 0 0 134s 12000 160 142 122 90 48 22 0 0 134s 13000 144 128 111 84 46 21 0 0 134s 14000 138 123 107 80 44 19 0 0 134s 15000 134 119 103 76 41 18 0 0 134s 16000 130 116 100 74 41 18 0 0 134s 17000 123 109 94 69 38 17 0 0 134s 18000 119 105 90 65 34 16 0 0 134s 19000 115 102 87 63 33 15 0 0 134s 20000 111 98 84 61 33 15 0 0 134s 21000 105 93 80 58 30 13 0 0 134s 22000 100 90 77 56 28 12 0 0 134s 23000 96 86 73 53 26 11 0 0 134s 24000 94 84 71 51 26 11 0 0 134s 25000 90 80 68 49 25 11 0 0 134s 26000 88 78 67 49 25 11 0 0 134s 27000 84 74 64 47 23 10 0 0 134s 28000 81 71 61 46 22 9 0 0 134s 29000 76 66 57 42 21 8 0 0 134s 30000 71 61 52 38 20 8 0 0 134s 31000 69 59 50 36 19 7 0 0 134s 32000 67 57 48 34 18 7 0 0 134s 33000 66 56 47 33 18 7 0 0 134s 34000 66 56 47 33 18 7 0 0 134s 35000 64 55 46 32 18 7 0 0 134s 36000 61 52 45 31 18 7 0 0 134s 37000 58 49 44 30 17 7 0 0 134s 38000 58 49 44 30 17 7 0 0 134s 39000 57 49 44 30 17 7 0 0 134s 40000 57 49 44 30 17 7 0 0 134s 45000 52 46 42 29 17 7 0 0 134s 50000 47 42 38 25 16 6 0 0 134s 55000 43 38 34 21 13 4 0 0 134s 60000 36 31 28 18 10 3 0 0 134s 65000 32 28 25 16 9 2 0 0 134s 70000 28 25 23 14 9 2 0 0 134s 75000 23 21 19 12 7 2 0 0 134s 80000 21 19 18 11 7 2 0 0 134s 85000 20 18 17 11 7 2 0 0 134s 90000 17 16 15 10 6 2 0 0 134s 95000 17 16 15 10 6 2 0 0 134s 100000 14 13 12 8 4 1 0 0 134s 120000 10 9 8 5 2 0 0 0 134s 140000 6 6 5 3 1 0 0 0 134s 160000 6 6 5 3 1 0 0 0 134s 180000 6 6 5 3 1 0 0 0 134s 200000 5 5 4 2 1 0 0 0 134s 220000 5 5 4 2 1 0 0 0 134s 240000 3 3 2 2 1 0 0 0 134s 260000 3 3 2 2 1 0 0 0 134s 280000 3 3 2 2 1 0 0 0 134s 300000 3 3 2 2 1 0 0 0 134s 320000 3 3 2 2 1 0 0 0 134s 340000 2 2 2 2 1 0 0 0 134s 360000 1 1 1 1 0 0 0 0 134s 380000 1 1 1 1 0 0 0 0 134s 400000 0 0 0 0 0 0 0 0 134s 134s autopkgtest [23:19:34]: test run-unit-test: -----------------------] 135s autopkgtest [23:19:35]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 135s run-unit-test PASS 135s autopkgtest [23:19:35]: @@@@@@@@@@@@@@@@@@@@ summary 135s run-unit-test PASS 140s virt: nova [W] Skipping flock for amd64 140s virt: Creating nova instance adt-plucky-amd64-python-pauvre-20241115-231720-juju-7f2275-prod-proposed-migration-environment-2-8f19fc90-bb21-47a3-9a56-dbe691371936 from image adt/ubuntu-plucky-amd64-server-20241115.img (UUID 9bb4dd9c-454f-45da-a125-77b9d27ed145)...