0s autopkgtest [04:27:13]: starting date and time: 2025-02-19 04:27:13+0000 0s autopkgtest [04:27:13]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [04:27:13]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.h66mqyad/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python-mp-api --apt-upgrade python-mp-api --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python-mp-api/0.43.0rc0-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-20.secgroup --name adt-plucky-amd64-python-mp-api-20250219-042712-juju-7f2275-prod-proposed-migration-environment-15-9203ab98-9f1d-46d3-a84c-a231302c6aad --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 101s autopkgtest [04:28:54]: testbed dpkg architecture: amd64 103s autopkgtest [04:28:56]: testbed apt version: 2.9.29 107s autopkgtest [04:29:00]: @@@@@@@@@@@@@@@@@@@@ test bed setup 111s autopkgtest [04:29:04]: testbed release detected to be: None 112s autopkgtest [04:29:05]: updating testbed package index (apt update) 114s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 114s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 114s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 114s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 114s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [788 kB] 114s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [79.1 kB] 114s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B] 114s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.6 kB] 114s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [84.0 kB] 114s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [106 kB] 114s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2412 B] 114s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [7984 B] 114s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [271 kB] 114s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [712 kB] 114s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [3440 B] 114s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [12.4 kB] 115s Fetched 2194 kB in 2s (1014 kB/s) 115s Reading package lists... 116s + lsb_release --codename --short 116s + RELEASE=plucky 116s + cat 116s + [ plucky != trusty ] 116s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 116s Calculating upgrade... 117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 117s + /usr/lib/apt/apt-helper analyze-pattern ?true 117s + uname -r 117s + sed s/\./\\./g 117s + running_kernel_pattern=^linux-.*6\.12\.0-15-generic.* 117s + apt list ?obsolete 117s + + cut -d/ -f1 117s tail -n+2 117s + grep -v ^linux-.*6\.12\.0-15-generic.* 117s + true 117s + obsolete_pkgs= 117s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s + grep -q trusty /etc/lsb-release 117s + [ ! -d /usr/share/doc/unattended-upgrades ] 117s + [ ! -d /usr/share/doc/lxd ] 117s + [ ! -d /usr/share/doc/lxd-client ] 117s + [ ! -d /usr/share/doc/snapd ] 117s + type iptables 117s + cat 117s + chmod 755 /etc/rc.local 117s + . /etc/rc.local 117s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 117s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 117s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 117s + uname -m 117s + [ x86_64 = ppc64le ] 117s + [ -d /run/systemd/system ] 117s + systemd-detect-virt --quiet --vm 117s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 117s + cat 117s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 117s + echo COMPRESS=lz4 117s autopkgtest [04:29:10]: upgrading testbed (apt dist-upgrade and autopurge) 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 118s Starting 2 pkgProblemResolver with broken count: 0 118s Done 119s Entering ResolveByKeep 119s 119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 120s Starting pkgProblemResolver with broken count: 0 120s Starting 2 pkgProblemResolver with broken count: 0 120s Done 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s autopkgtest [04:29:15]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Tue Feb 4 16:02:16 UTC 2025 123s autopkgtest [04:29:16]: @@@@@@@@@@@@@@@@@@@@ apt-source python-mp-api 124s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/universe python-mp-api 0.43.0rc0-1 (dsc) [2394 B] 124s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe python-mp-api 0.43.0rc0-1 (tar) [718 kB] 124s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe python-mp-api 0.43.0rc0-1 (diff) [3792 B] 125s gpgv: Signature made Thu Nov 7 11:32:42 2024 UTC 125s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 125s gpgv: Can't check signature: No public key 125s dpkg-source: warning: cannot verify inline signature for ./python-mp-api_0.43.0rc0-1.dsc: no acceptable signature found 125s autopkgtest [04:29:18]: testing package python-mp-api version 0.43.0rc0-1 125s autopkgtest [04:29:18]: build not needed 125s autopkgtest [04:29:18]: test command1: preparing testbed 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 126s Starting pkgProblemResolver with broken count: 0 126s Starting 2 pkgProblemResolver with broken count: 0 126s Done 127s The following NEW packages will be installed: 127s autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14 127s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu debhelper debugedit 127s dh-autoreconf dh-python dh-strip-nondeterminism dwz fontconfig-config 127s fonts-dejavu-core fonts-dejavu-mono fonts-lyx g++ g++-14 127s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 127s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian 127s libarchive-zip-perl libasan8 libblas3 libboost-iostreams1.83.0 libcairo2 127s libcc1-0 libdebhelper-perl libdeflate0 libfile-stripnondeterminism-perl 127s libfontconfig1 libgcc-14-dev libgfortran5 libgomp1 libgraphite2-3 127s libharfbuzz0b libhwasan0 libimagequant0 libinchi1.07 libisl23 libitm1 127s libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 127s liblbfgsb0 liblcms2-2 liblerc4 liblsan0 libmaeparser1 libmpc3 libnorm1t64 127s libopenbabel7 libopenjp2-7 libopenmm-dev libopenmm8.1 libpgm-5.3-0t64 127s libpixman-1-0 libqhull-r8.0 libquadmath0 libraqm0 libsharpyuv0 libsodium23 127s libstdc++-14-dev libsymspg2 libtcl8.6 libtiff6 libtk8.6 libtool libtsan2 127s libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 127s libxft2 libxrender1 libxslt1.1 libxss1 libzmq5 m4 po-debconf 127s pybuild-plugin-pyproject python-matplotlib-data python3-aioitertools 127s python3-all python3-annotated-types python3-async-generator python3-boto3 127s python3-botocore python3-brotli python3-bson python3-build python3-contourpy 127s python3-custodian python3-cycler python3-dateutil python3-decorator 127s python3-dnspython python3-dotenv python3-email-validator python3-emmet-core 127s python3-fastjsonschema python3-fonttools python3-fs python3-iniconfig 127s python3-installer python3-jmespath python3-joblib python3-jsonlines 127s python3-jupyter-core python3-kiwisolver python3-latexcodec python3-lxml 127s python3-lz4 python3-maggma python3-matplotlib python3-mongomock 127s python3-monty python3-mp-api python3-mpmath python3-msgpack python3-nacl 127s python3-nbformat python3-networkx python3-numpy python3-openbabel 127s python3-openmm python3-orjson python3-packaging python3-palettable 127s python3-pandas python3-pandas-lib python3-paramiko python3-pil 127s python3-pil.imagetk python3-platformdirs python3-plotly python3-pluggy 127s python3-psutil python3-pybtex python3-pydantic python3-pydantic-core 127s python3-pydantic-settings python3-pydash python3-pymatgen python3-pymongo 127s python3-pyproject-hooks python3-pytest python3-pytest-asyncio python3-pytz 127s python3-ruamel.yaml python3-ruamel.yaml.clib python3-s3transfer 127s python3-scipy python3-sentinels python3-sentry-sdk python3-setuptools-scm 127s python3-six python3-smart-open python3-spglib python3-sshtunnel 127s python3-sympy python3-tabulate python3-tenacity python3-tk python3-toml 127s python3-tqdm python3-traitlets python3-tz python3-ufolib2 127s python3-uncertainties python3-unicodedata2 python3-wheel python3-wrapt 127s python3-zmq python3.12 python3.12-minimal python3.12-tk python3.13-tk 127s tk8.6-blt2.5 unicode-data x11-common 127s 0 upgraded, 195 newly installed, 0 to remove and 0 not upgraded. 127s Need to get 199 MB of archives. 127s After this operation, 1048 MB of additional disk space will be used. 127s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-minimal amd64 3.12.9-1 [2348 kB] 128s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12 amd64 3.12.9-1 [671 kB] 128s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-5 [263 kB] 128s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB] 128s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB] 128s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.17-3 [572 kB] 128s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.23.1-1 [619 kB] 128s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 128s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 128s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 128s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 128s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 128s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 128s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 128s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 128s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 128s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 128s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 129s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 129s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 129s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 129s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu1 [11.9 MB] 129s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu1 [1032 B] 129s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 129s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 129s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250213-1ubuntu1 [47.0 kB] 129s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250213-1ubuntu1 [148 kB] 129s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250213-1ubuntu1 [28.5 kB] 129s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250213-1ubuntu1 [3059 kB] 129s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250213-1ubuntu1 [1356 kB] 129s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250213-1ubuntu1 [2757 kB] 129s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250213-1ubuntu1 [1206 kB] 129s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250213-1ubuntu1 [1678 kB] 129s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250213-1ubuntu1 [152 kB] 129s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu1 [2814 kB] 129s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu1 [23.3 MB] 131s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu1 [536 kB] 131s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 131s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 131s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu1 [2507 kB] 131s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu1 [13.4 MB] 131s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu1 [21.8 kB] 131s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 131s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 131s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 131s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB] 131s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.5.4-3build1 [168 kB] 131s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB] 131s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 131s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB] 131s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.1-2 [5064 B] 131s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-2 [47.0 kB] 131s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB] 131s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.23.1-1 [1086 kB] 131s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 131s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 131s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.24.1ubuntu2 [895 kB] 131s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20250108 [117 kB] 131s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.3-1 [171 kB] 131s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 131s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-4.1ubuntu1 [260 kB] 131s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 131s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 131s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 131s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 131s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 131s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250213-1ubuntu1 [920 kB] 132s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 132s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 132s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 132s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libinchi1.07 amd64 1.07.2+dfsg-1 [702 kB] 132s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 132s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 132s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 132s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 132s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 132s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 132s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 132s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 132s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmaeparser1 amd64 1.3.1-1build1 [90.2 kB] 132s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1build1 [154 kB] 132s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenbabel7 amd64 3.1.1+dfsg-11ubuntu3 [3501 kB] 132s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenmm8.1 amd64 8.1.2+dfsg-3 [1120 kB] 132s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenmm-dev amd64 8.1.2+dfsg-3 [349 kB] 132s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1build1 [167 kB] 132s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 132s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.2-1 [17.2 kB] 132s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 132s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libsodium23 amd64 1.0.18-1build3 [161 kB] 132s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsymspg2 amd64 2.5.0-1ubuntu2 [251 kB] 132s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 132s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 132s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 132s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 132s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 132s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu2 [175 kB] 132s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzmq5 amd64 4.3.5-1build2 [260 kB] 132s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.2-1 [51.5 kB] 132s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 132s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-toml all 0.10.2-1 [16.5 kB] 132s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-wheel all 0.45.1-1 [57.7 kB] 132s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-build all 1.2.2-1 [31.0 kB] 132s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 132s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-pyproject all 6.20250108 [1726 B] 132s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-matplotlib-data all 3.8.3-3ubuntu2 [2929 kB] 133s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-aioitertools all 0.12.0-1 [18.8 kB] 133s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.13.1-1~exp2 [894 B] 133s Get:108 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-annotated-types all 0.7.0-1 [19.4 kB] 133s Get:109 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-async-generator all 1.10-4 [17.5 kB] 133s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-3 [80.2 kB] 133s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jmespath all 1.0.1-1 [21.3 kB] 133s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.17.0-1 [13.2 kB] 133s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-botocore all 1.36.9+repack-1 [6927 kB] 133s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-s3transfer all 0.11.2-2 [55.5 kB] 133s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-boto3 all 1.36.0+dfsg-1 [72.5 kB] 133s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build3 [368 kB] 133s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bson all 4.10.1-5 [42.8 kB] 133s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-13 [5319 kB] 133s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.1-1 [271 kB] 133s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pytz all 2025.1-3 [162 kB] 133s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2025.1-3 [1866 B] 133s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-8 [8248 kB] 134s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-8 [3112 kB] 134s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pydantic-core amd64 2.27.2-1 [1860 kB] 134s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dnspython all 2.7.0-1ubuntu1 [167 kB] 134s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-email-validator all 2.2.0-1 [28.5 kB] 134s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pydantic amd64 2.10.6-1 [288 kB] 134s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-tqdm all 4.67.1-2 [92.5 kB] 134s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ruamel.yaml.clib amd64 0.2.12+ds-1 [218 kB] 134s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ruamel.yaml all 0.18.10+ds-1 [127 kB] 134s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-monty all 2025.1.9-1 [40.1 kB] 134s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-psutil amd64 5.9.8-2build3 [196 kB] 134s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu3 [217 kB] 134s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 11.1.0-5 [589 kB] 134s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.9-1 [116 kB] 134s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-tk amd64 3.13.2-1 [107 kB] 134s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tk amd64 3.13.1-1 [9770 B] 134s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 11.1.0-5 [9936 B] 134s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 134s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB] 134s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-6 [90.7 kB] 134s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.1-1 [1831 kB] 134s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.4.0+dfsg-1 [27.4 kB] 135s Get:144 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 135s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.14.1-4ubuntu1 [22.3 MB] 135s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 135s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB] 135s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 135s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build2 [360 kB] 135s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 135s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.55.3-2 [1755 kB] 136s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-3 [70.4 kB] 136s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib amd64 3.8.3-3ubuntu2 [4697 kB] 136s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sentry-sdk all 2.18.0-1 [193 kB] 136s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-custodian all 2024.10.16-1 [90.9 kB] 136s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-dotenv all 1.0.1-1 [22.3 kB] 136s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-latexcodec all 3.0.0-1 [16.6 kB] 136s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pybtex all 0.24.0-4 [70.0 kB] 136s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pydantic-settings all 2.7.1-1 [42.4 kB] 136s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.4.2-2 [205 kB] 136s Get:161 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 136s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-palettable all 3.3.3-1 [81.3 kB] 136s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fastjsonschema all 2.21.1-1 [20.4 kB] 136s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 136s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jupyter-core all 5.7.2-5 [28.1 kB] 136s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB] 136s Get:167 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 136s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 136s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-spglib amd64 2.5.0-1ubuntu2 [31.7 kB] 136s Get:170 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tabulate all 0.9.0-1 [45.3 kB] 136s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-uncertainties all 3.2.2-1 [51.4 kB] 136s Get:172 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-pymatgen amd64 2024.10.29+dfsg1-5 [2670 kB] 136s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-openbabel amd64 3.1.1+dfsg-11ubuntu3 [671 kB] 136s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-openmm amd64 8.1.2+dfsg-3 [7948 kB] 137s Get:175 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-emmet-core all 0.84.2-2 [133 kB] 137s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 137s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jsonlines all 4.0.0-2 [9224 B] 137s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sentinels all 1.0.0-8 [4972 B] 137s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mongomock all 4.3.0-2 [52.7 kB] 137s Get:180 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-msgpack amd64 1.0.3-3build3 [113 kB] 137s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-orjson amd64 3.10.7-2 [290 kB] 137s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pydash all 8.0.3-2 [92.6 kB] 137s Get:183 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pymongo all 4.10.1-5 [227 kB] 137s Get:184 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-nacl amd64 1.5.0-7 [61.0 kB] 137s Get:185 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-paramiko all 3.5.0-1ubuntu1 [147 kB] 137s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sshtunnel all 0.1.4-3 [23.5 kB] 137s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-zmq amd64 26.2.1-1 [226 kB] 137s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-maggma all 0.70.0-3 [73.2 kB] 137s Get:189 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-wrapt amd64 1.15.0-4 [34.8 kB] 137s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-smart-open all 7.1.0-1 [89.9 kB] 137s Get:191 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-mp-api all 0.43.0rc0-1 [47.6 kB] 137s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 137s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.4-1 [252 kB] 137s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-asyncio all 0.25.1-1 [17.0 kB] 137s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-setuptools-scm all 8.1.0-1 [32.2 kB] 137s Fetched 199 MB in 10s (20.0 MB/s) 137s Selecting previously unselected package python3.12-minimal. 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108925 files and directories currently installed.) 138s Preparing to unpack .../000-python3.12-minimal_3.12.9-1_amd64.deb ... 138s Unpacking python3.12-minimal (3.12.9-1) ... 138s Selecting previously unselected package python3.12. 138s Preparing to unpack .../001-python3.12_3.12.9-1_amd64.deb ... 138s Unpacking python3.12 (3.12.9-1) ... 138s Selecting previously unselected package m4. 138s Preparing to unpack .../002-m4_1.4.19-5_amd64.deb ... 138s Unpacking m4 (1.4.19-5) ... 138s Selecting previously unselected package autoconf. 138s Preparing to unpack .../003-autoconf_2.72-3_all.deb ... 138s Unpacking autoconf (2.72-3) ... 138s Selecting previously unselected package autotools-dev. 138s Preparing to unpack .../004-autotools-dev_20220109.1_all.deb ... 138s Unpacking autotools-dev (20220109.1) ... 138s Selecting previously unselected package automake. 138s Preparing to unpack .../005-automake_1%3a1.17-3_all.deb ... 138s Unpacking automake (1:1.17-3) ... 138s Selecting previously unselected package autopoint. 138s Preparing to unpack .../006-autopoint_0.23.1-1_all.deb ... 138s Unpacking autopoint (0.23.1-1) ... 138s Selecting previously unselected package libtcl8.6:amd64. 138s Preparing to unpack .../007-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 138s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 138s Selecting previously unselected package fonts-dejavu-mono. 138s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 138s Unpacking fonts-dejavu-mono (2.37-8) ... 138s Selecting previously unselected package fonts-dejavu-core. 138s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 138s Unpacking fonts-dejavu-core (2.37-8) ... 138s Selecting previously unselected package fontconfig-config. 138s Preparing to unpack .../010-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 138s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 138s Selecting previously unselected package libfontconfig1:amd64. 138s Preparing to unpack .../011-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 138s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 138s Selecting previously unselected package libxrender1:amd64. 138s Preparing to unpack .../012-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 138s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 138s Selecting previously unselected package libxft2:amd64. 138s Preparing to unpack .../013-libxft2_2.3.6-1build1_amd64.deb ... 138s Unpacking libxft2:amd64 (2.3.6-1build1) ... 138s Selecting previously unselected package x11-common. 138s Preparing to unpack .../014-x11-common_1%3a7.7+23ubuntu3_all.deb ... 138s Unpacking x11-common (1:7.7+23ubuntu3) ... 138s Selecting previously unselected package libxss1:amd64. 138s Preparing to unpack .../015-libxss1_1%3a1.2.3-1build3_amd64.deb ... 138s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 138s Selecting previously unselected package libtk8.6:amd64. 138s Preparing to unpack .../016-libtk8.6_8.6.16-1_amd64.deb ... 138s Unpacking libtk8.6:amd64 (8.6.16-1) ... 138s Selecting previously unselected package tk8.6-blt2.5. 138s Preparing to unpack .../017-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 138s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 138s Selecting previously unselected package blt. 138s Preparing to unpack .../018-blt_2.5.3+dfsg-7build1_amd64.deb ... 138s Unpacking blt (2.5.3+dfsg-7build1) ... 138s Selecting previously unselected package libisl23:amd64. 138s Preparing to unpack .../019-libisl23_0.27-1_amd64.deb ... 138s Unpacking libisl23:amd64 (0.27-1) ... 138s Selecting previously unselected package libmpc3:amd64. 139s Preparing to unpack .../020-libmpc3_1.3.1-1build2_amd64.deb ... 139s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 139s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 139s Preparing to unpack .../021-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu1_amd64.deb ... 139s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu1) ... 139s Selecting previously unselected package cpp-14. 139s Preparing to unpack .../022-cpp-14_14.2.0-17ubuntu1_amd64.deb ... 139s Unpacking cpp-14 (14.2.0-17ubuntu1) ... 139s Selecting previously unselected package cpp-x86-64-linux-gnu. 139s Preparing to unpack .../023-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 139s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 139s Selecting previously unselected package cpp. 139s Preparing to unpack .../024-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 139s Unpacking cpp (4:14.2.0-1ubuntu1) ... 139s Selecting previously unselected package libcc1-0:amd64. 139s Preparing to unpack .../025-libcc1-0_15-20250213-1ubuntu1_amd64.deb ... 139s Unpacking libcc1-0:amd64 (15-20250213-1ubuntu1) ... 139s Selecting previously unselected package libgomp1:amd64. 139s Preparing to unpack .../026-libgomp1_15-20250213-1ubuntu1_amd64.deb ... 139s Unpacking libgomp1:amd64 (15-20250213-1ubuntu1) ... 139s Selecting previously unselected package libitm1:amd64. 139s Preparing to unpack .../027-libitm1_15-20250213-1ubuntu1_amd64.deb ... 139s Unpacking libitm1:amd64 (15-20250213-1ubuntu1) ... 139s Selecting previously unselected package libasan8:amd64. 139s Preparing to unpack .../028-libasan8_15-20250213-1ubuntu1_amd64.deb ... 139s Unpacking libasan8:amd64 (15-20250213-1ubuntu1) ... 139s Selecting previously unselected package liblsan0:amd64. 139s Preparing to unpack .../029-liblsan0_15-20250213-1ubuntu1_amd64.deb ... 139s Unpacking liblsan0:amd64 (15-20250213-1ubuntu1) ... 139s Selecting previously unselected package libtsan2:amd64. 139s Preparing to unpack .../030-libtsan2_15-20250213-1ubuntu1_amd64.deb ... 139s Unpacking libtsan2:amd64 (15-20250213-1ubuntu1) ... 139s Selecting previously unselected package libubsan1:amd64. 139s Preparing to unpack .../031-libubsan1_15-20250213-1ubuntu1_amd64.deb ... 139s Unpacking libubsan1:amd64 (15-20250213-1ubuntu1) ... 139s Selecting previously unselected package libhwasan0:amd64. 139s Preparing to unpack .../032-libhwasan0_15-20250213-1ubuntu1_amd64.deb ... 139s Unpacking libhwasan0:amd64 (15-20250213-1ubuntu1) ... 139s Selecting previously unselected package libquadmath0:amd64. 139s Preparing to unpack .../033-libquadmath0_15-20250213-1ubuntu1_amd64.deb ... 139s Unpacking libquadmath0:amd64 (15-20250213-1ubuntu1) ... 139s Selecting previously unselected package libgcc-14-dev:amd64. 139s Preparing to unpack .../034-libgcc-14-dev_14.2.0-17ubuntu1_amd64.deb ... 139s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu1) ... 139s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 139s Preparing to unpack .../035-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu1_amd64.deb ... 139s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu1) ... 140s Selecting previously unselected package gcc-14. 140s Preparing to unpack .../036-gcc-14_14.2.0-17ubuntu1_amd64.deb ... 140s Unpacking gcc-14 (14.2.0-17ubuntu1) ... 140s Selecting previously unselected package gcc-x86-64-linux-gnu. 140s Preparing to unpack .../037-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 140s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 140s Selecting previously unselected package gcc. 140s Preparing to unpack .../038-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 140s Unpacking gcc (4:14.2.0-1ubuntu1) ... 140s Selecting previously unselected package libstdc++-14-dev:amd64. 140s Preparing to unpack .../039-libstdc++-14-dev_14.2.0-17ubuntu1_amd64.deb ... 140s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu1) ... 140s Selecting previously unselected package g++-14-x86-64-linux-gnu. 140s Preparing to unpack .../040-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu1_amd64.deb ... 140s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu1) ... 140s Selecting previously unselected package g++-14. 140s Preparing to unpack .../041-g++-14_14.2.0-17ubuntu1_amd64.deb ... 140s Unpacking g++-14 (14.2.0-17ubuntu1) ... 140s Selecting previously unselected package g++-x86-64-linux-gnu. 140s Preparing to unpack .../042-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 140s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 140s Selecting previously unselected package g++. 140s Preparing to unpack .../043-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 140s Unpacking g++ (4:14.2.0-1ubuntu1) ... 140s Selecting previously unselected package build-essential. 140s Preparing to unpack .../044-build-essential_12.10ubuntu1_amd64.deb ... 140s Unpacking build-essential (12.10ubuntu1) ... 140s Selecting previously unselected package libdebhelper-perl. 140s Preparing to unpack .../045-libdebhelper-perl_13.24.1ubuntu2_all.deb ... 140s Unpacking libdebhelper-perl (13.24.1ubuntu2) ... 140s Selecting previously unselected package libtool. 140s Preparing to unpack .../046-libtool_2.5.4-3build1_all.deb ... 140s Unpacking libtool (2.5.4-3build1) ... 140s Selecting previously unselected package dh-autoreconf. 140s Preparing to unpack .../047-dh-autoreconf_20_all.deb ... 140s Unpacking dh-autoreconf (20) ... 140s Selecting previously unselected package libarchive-zip-perl. 140s Preparing to unpack .../048-libarchive-zip-perl_1.68-1_all.deb ... 140s Unpacking libarchive-zip-perl (1.68-1) ... 140s Selecting previously unselected package libfile-stripnondeterminism-perl. 140s Preparing to unpack .../049-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... 140s Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... 140s Selecting previously unselected package dh-strip-nondeterminism. 140s Preparing to unpack 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libpixman-1-0:amd64 (0.44.0-3) ... 141s Selecting previously unselected package libxcb-render0:amd64. 141s Preparing to unpack .../062-libxcb-render0_1.17.0-2_amd64.deb ... 141s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 141s Selecting previously unselected package libxcb-shm0:amd64. 141s Preparing to unpack .../063-libxcb-shm0_1.17.0-2_amd64.deb ... 141s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 141s Selecting previously unselected package libcairo2:amd64. 141s Preparing to unpack .../064-libcairo2_1.18.2-2_amd64.deb ... 141s Unpacking libcairo2:amd64 (1.18.2-2) ... 141s Selecting previously unselected package libdeflate0:amd64. 141s Preparing to unpack .../065-libdeflate0_1.23-1_amd64.deb ... 141s Unpacking libdeflate0:amd64 (1.23-1) ... 141s Selecting previously unselected package libgfortran5:amd64. 141s Preparing to unpack .../066-libgfortran5_15-20250213-1ubuntu1_amd64.deb ... 141s Unpacking libgfortran5:amd64 (15-20250213-1ubuntu1) ... 141s Selecting previously unselected package libgraphite2-3:amd64. 141s Preparing to unpack .../067-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 141s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 141s Selecting previously unselected package libharfbuzz0b:amd64. 141s Preparing to unpack .../068-libharfbuzz0b_10.2.0-1_amd64.deb ... 141s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 141s Selecting previously unselected package libimagequant0:amd64. 141s Preparing to unpack .../069-libimagequant0_2.18.0-1build1_amd64.deb ... 141s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 141s Selecting previously unselected package libinchi1.07. 141s Preparing to unpack .../070-libinchi1.07_1.07.2+dfsg-1_amd64.deb ... 141s Unpacking libinchi1.07 (1.07.2+dfsg-1) ... 141s Selecting previously unselected package libjpeg-turbo8:amd64. 141s Preparing to unpack .../071-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 141s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 141s Selecting previously unselected package libjpeg8:amd64. 141s Preparing to unpack .../072-libjpeg8_8c-2ubuntu11_amd64.deb ... 141s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 141s Selecting previously unselected package libjs-jquery. 141s Preparing to unpack .../073-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 141s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 141s Selecting previously unselected package libjs-jquery-ui. 141s Preparing to unpack .../074-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 141s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 141s Selecting previously unselected package liblapack3:amd64. 141s Preparing to unpack .../075-liblapack3_3.12.1-2_amd64.deb ... 141s Unpacking liblapack3:amd64 (3.12.1-2) ... 141s Selecting previously unselected package liblbfgsb0:amd64. 141s Preparing to unpack .../076-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 141s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 142s Selecting previously unselected package liblcms2-2:amd64. 142s Preparing to unpack .../077-liblcms2-2_2.16-2_amd64.deb ... 142s Unpacking liblcms2-2:amd64 (2.16-2) ... 142s Selecting previously unselected package liblerc4:amd64. 142s Preparing to unpack .../078-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 142s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 142s Selecting previously unselected package libmaeparser1:amd64. 142s Preparing to unpack .../079-libmaeparser1_1.3.1-1build1_amd64.deb ... 142s Unpacking libmaeparser1:amd64 (1.3.1-1build1) ... 142s Selecting previously unselected package libnorm1t64:amd64. 142s Preparing to unpack .../080-libnorm1t64_1.5.9+dfsg-3.1build1_amd64.deb ... 142s Unpacking libnorm1t64:amd64 (1.5.9+dfsg-3.1build1) ... 142s Selecting previously unselected package libopenbabel7. 142s Preparing to unpack .../081-libopenbabel7_3.1.1+dfsg-11ubuntu3_amd64.deb ... 142s Unpacking libopenbabel7 (3.1.1+dfsg-11ubuntu3) ... 142s Selecting previously unselected package libopenmm8.1. 142s Preparing to unpack .../082-libopenmm8.1_8.1.2+dfsg-3_amd64.deb ... 142s Unpacking libopenmm8.1 (8.1.2+dfsg-3) ... 142s Selecting previously unselected package libopenmm-dev. 142s Preparing to unpack .../083-libopenmm-dev_8.1.2+dfsg-3_amd64.deb ... 142s Unpacking libopenmm-dev (8.1.2+dfsg-3) ... 142s Selecting previously unselected package libpgm-5.3-0t64:amd64. 142s Preparing to unpack .../084-libpgm-5.3-0t64_5.3.128~dfsg-2.1build1_amd64.deb ... 142s Unpacking libpgm-5.3-0t64:amd64 (5.3.128~dfsg-2.1build1) ... 142s Selecting previously unselected package libqhull-r8.0:amd64. 142s Preparing to unpack .../085-libqhull-r8.0_2020.2-6build1_amd64.deb ... 142s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 142s Selecting previously unselected package libraqm0:amd64. 142s Preparing to unpack .../086-libraqm0_0.10.2-1_amd64.deb ... 142s Unpacking libraqm0:amd64 (0.10.2-1) ... 142s Selecting previously unselected package libsharpyuv0:amd64. 142s Preparing to unpack .../087-libsharpyuv0_1.5.0-0.1_amd64.deb ... 142s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 142s Selecting previously unselected package libsodium23:amd64. 142s Preparing to unpack .../088-libsodium23_1.0.18-1build3_amd64.deb ... 142s Unpacking libsodium23:amd64 (1.0.18-1build3) ... 142s Selecting previously unselected package libsymspg2:amd64. 142s Preparing to unpack .../089-libsymspg2_2.5.0-1ubuntu2_amd64.deb ... 142s Unpacking libsymspg2:amd64 (2.5.0-1ubuntu2) ... 142s Selecting previously unselected package libjbig0:amd64. 142s Preparing to unpack .../090-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 142s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 142s Selecting previously unselected package libwebp7:amd64. 142s Preparing to unpack .../091-libwebp7_1.5.0-0.1_amd64.deb ... 142s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 142s Selecting previously unselected package libtiff6:amd64. 142s Preparing to unpack .../092-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 142s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 142s Selecting previously unselected package libwebpdemux2:amd64. 142s Preparing to unpack .../093-libwebpdemux2_1.5.0-0.1_amd64.deb ... 142s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ... 142s Selecting previously unselected package libwebpmux3:amd64. 142s Preparing to unpack .../094-libwebpmux3_1.5.0-0.1_amd64.deb ... 142s Unpacking libwebpmux3:amd64 (1.5.0-0.1) ... 142s Selecting previously unselected package libxslt1.1:amd64. 142s Preparing to unpack .../095-libxslt1.1_1.1.39-0exp1ubuntu2_amd64.deb ... 142s Unpacking libxslt1.1:amd64 (1.1.39-0exp1ubuntu2) ... 142s Selecting previously unselected package libzmq5:amd64. 142s Preparing to unpack .../096-libzmq5_4.3.5-1build2_amd64.deb ... 142s Unpacking libzmq5:amd64 (4.3.5-1build2) ... 142s Selecting previously unselected package python3-packaging. 142s Preparing to unpack .../097-python3-packaging_24.2-1_all.deb ... 142s Unpacking python3-packaging (24.2-1) ... 142s Selecting previously unselected package python3-pyproject-hooks. 142s Preparing to unpack .../098-python3-pyproject-hooks_1.2.0-1_all.deb ... 142s Unpacking python3-pyproject-hooks (1.2.0-1) ... 142s Selecting previously unselected package python3-toml. 142s Preparing to unpack .../099-python3-toml_0.10.2-1_all.deb ... 142s Unpacking python3-toml (0.10.2-1) ... 142s Selecting previously unselected package python3-wheel. 142s Preparing to unpack .../100-python3-wheel_0.45.1-1_all.deb ... 142s Unpacking python3-wheel (0.45.1-1) ... 142s Selecting previously unselected package python3-build. 142s Preparing to unpack .../101-python3-build_1.2.2-1_all.deb ... 142s Unpacking python3-build (1.2.2-1) ... 142s Selecting previously unselected package python3-installer. 142s Preparing to unpack .../102-python3-installer_0.7.0+dfsg1-3_all.deb ... 142s Unpacking python3-installer (0.7.0+dfsg1-3) ... 142s Selecting previously unselected package pybuild-plugin-pyproject. 142s Preparing to unpack .../103-pybuild-plugin-pyproject_6.20250108_all.deb ... 142s Unpacking pybuild-plugin-pyproject (6.20250108) ... 142s Selecting previously unselected package python-matplotlib-data. 142s Preparing to unpack .../104-python-matplotlib-data_3.8.3-3ubuntu2_all.deb ... 142s Unpacking python-matplotlib-data (3.8.3-3ubuntu2) ... 143s Selecting previously unselected package python3-aioitertools. 143s Preparing to unpack .../105-python3-aioitertools_0.12.0-1_all.deb ... 143s Unpacking python3-aioitertools (0.12.0-1) ... 143s Selecting previously unselected package python3-all. 143s Preparing to unpack .../106-python3-all_3.13.1-1~exp2_amd64.deb ... 143s Unpacking python3-all (3.13.1-1~exp2) ... 143s Selecting previously unselected package python3-annotated-types. 143s Preparing to unpack .../107-python3-annotated-types_0.7.0-1_all.deb ... 143s Unpacking python3-annotated-types (0.7.0-1) ... 143s Selecting previously unselected package python3-async-generator. 143s Preparing to unpack .../108-python3-async-generator_1.10-4_all.deb ... 143s Unpacking python3-async-generator (1.10-4) ... 143s Selecting previously unselected package python3-dateutil. 143s Preparing to unpack .../109-python3-dateutil_2.9.0-3_all.deb ... 143s Unpacking python3-dateutil (2.9.0-3) ... 143s Selecting previously unselected package python3-jmespath. 143s Preparing to unpack .../110-python3-jmespath_1.0.1-1_all.deb ... 143s Unpacking python3-jmespath (1.0.1-1) ... 143s Selecting previously unselected package python3-six. 143s Preparing to unpack .../111-python3-six_1.17.0-1_all.deb ... 143s Unpacking python3-six (1.17.0-1) ... 143s Selecting previously unselected package python3-botocore. 143s Preparing to unpack .../112-python3-botocore_1.36.9+repack-1_all.deb ... 143s Unpacking python3-botocore (1.36.9+repack-1) ... 143s Selecting previously unselected package python3-s3transfer. 143s Preparing to unpack .../113-python3-s3transfer_0.11.2-2_all.deb ... 143s Unpacking python3-s3transfer (0.11.2-2) ... 143s Selecting previously unselected package python3-boto3. 143s Preparing to unpack .../114-python3-boto3_1.36.0+dfsg-1_all.deb ... 143s Unpacking python3-boto3 (1.36.0+dfsg-1) ... 143s Selecting previously unselected package python3-brotli. 143s Preparing to unpack .../115-python3-brotli_1.1.0-2build3_amd64.deb ... 143s Unpacking python3-brotli (1.1.0-2build3) ... 144s Selecting previously unselected package python3-bson. 144s Preparing to unpack .../116-python3-bson_4.10.1-5_all.deb ... 144s Unpacking python3-bson (4.10.1-5) ... 144s Selecting previously unselected package python3-numpy. 144s Preparing to unpack .../117-python3-numpy_1%3a1.26.4+ds-13_amd64.deb ... 144s Unpacking python3-numpy (1:1.26.4+ds-13) ... 144s Selecting previously unselected package python3-contourpy. 144s Preparing to unpack .../118-python3-contourpy_1.3.1-1_amd64.deb ... 144s Unpacking python3-contourpy (1.3.1-1) ... 144s Selecting previously unselected package python3-pytz. 144s Preparing to unpack .../119-python3-pytz_2025.1-3_all.deb ... 144s Unpacking python3-pytz (2025.1-3) ... 144s Selecting previously unselected package python3-tz. 144s Preparing to unpack .../120-python3-tz_2025.1-3_all.deb ... 144s Unpacking python3-tz (2025.1-3) ... 144s Selecting previously unselected package python3-pandas-lib:amd64. 144s Preparing to unpack .../121-python3-pandas-lib_2.2.3+dfsg-8_amd64.deb ... 144s Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-8) ... 144s Selecting previously unselected package python3-pandas. 144s Preparing to unpack .../122-python3-pandas_2.2.3+dfsg-8_all.deb ... 144s Unpacking python3-pandas (2.2.3+dfsg-8) ... 144s Selecting previously unselected package python3-pydantic-core. 144s Preparing to unpack .../123-python3-pydantic-core_2.27.2-1_amd64.deb ... 144s Unpacking python3-pydantic-core (2.27.2-1) ... 145s Selecting previously unselected package python3-dnspython. 145s Preparing to unpack .../124-python3-dnspython_2.7.0-1ubuntu1_all.deb ... 145s Unpacking python3-dnspython (2.7.0-1ubuntu1) ... 145s Selecting previously unselected package python3-email-validator. 145s Preparing to unpack .../125-python3-email-validator_2.2.0-1_all.deb ... 145s Unpacking python3-email-validator (2.2.0-1) ... 145s Selecting previously unselected package python3-pydantic. 145s Preparing to unpack .../126-python3-pydantic_2.10.6-1_amd64.deb ... 145s Unpacking python3-pydantic (2.10.6-1) ... 145s Selecting previously unselected package python3-tqdm. 145s Preparing to unpack .../127-python3-tqdm_4.67.1-2_all.deb ... 145s Unpacking python3-tqdm (4.67.1-2) ... 145s Selecting previously unselected package python3-ruamel.yaml.clib. 145s Preparing to unpack .../128-python3-ruamel.yaml.clib_0.2.12+ds-1_amd64.deb ... 145s Unpacking python3-ruamel.yaml.clib (0.2.12+ds-1) ... 145s Selecting previously unselected package python3-ruamel.yaml. 145s Preparing to unpack .../129-python3-ruamel.yaml_0.18.10+ds-1_all.deb ... 145s Unpacking python3-ruamel.yaml (0.18.10+ds-1) ... 145s Selecting previously unselected package python3-monty. 145s Preparing to unpack .../130-python3-monty_2025.1.9-1_all.deb ... 145s Unpacking python3-monty (2025.1.9-1) ... 145s Selecting previously unselected package python3-psutil. 145s Preparing to unpack .../131-python3-psutil_5.9.8-2build3_amd64.deb ... 145s Unpacking python3-psutil (5.9.8-2build3) ... 145s Selecting previously unselected package libopenjp2-7:amd64. 145s Preparing to unpack .../132-libopenjp2-7_2.5.0-2ubuntu3_amd64.deb ... 145s Unpacking libopenjp2-7:amd64 (2.5.0-2ubuntu3) ... 145s Selecting previously unselected package python3-pil:amd64. 145s Preparing to unpack .../133-python3-pil_11.1.0-5_amd64.deb ... 145s Unpacking python3-pil:amd64 (11.1.0-5) ... 145s Selecting previously unselected package python3.12-tk. 145s Preparing to unpack .../134-python3.12-tk_3.12.9-1_amd64.deb ... 145s Unpacking python3.12-tk (3.12.9-1) ... 145s Selecting previously unselected package python3.13-tk. 145s Preparing to unpack .../135-python3.13-tk_3.13.2-1_amd64.deb ... 145s Unpacking python3.13-tk (3.13.2-1) ... 145s Selecting previously unselected package python3-tk:amd64. 145s Preparing to unpack .../136-python3-tk_3.13.1-1_amd64.deb ... 145s Unpacking python3-tk:amd64 (3.13.1-1) ... 145s Selecting previously unselected package python3-pil.imagetk:amd64. 145s Preparing to unpack .../137-python3-pil.imagetk_11.1.0-5_amd64.deb ... 145s Unpacking python3-pil.imagetk:amd64 (11.1.0-5) ... 145s Selecting previously unselected package python3-cycler. 145s Preparing to unpack .../138-python3-cycler_0.12.1-1_all.deb ... 145s Unpacking python3-cycler (0.12.1-1) ... 145s Selecting previously unselected package python3-platformdirs. 145s Preparing to unpack .../139-python3-platformdirs_4.3.6-1_all.deb ... 145s Unpacking python3-platformdirs (4.3.6-1) ... 145s Selecting previously unselected package python3-fs. 145s Preparing to unpack .../140-python3-fs_2.4.16-6_all.deb ... 145s Unpacking python3-fs (2.4.16-6) ... 145s Selecting previously unselected package python3-lxml:amd64. 145s Preparing to unpack .../141-python3-lxml_5.3.1-1_amd64.deb ... 145s Unpacking python3-lxml:amd64 (5.3.1-1) ... 145s Selecting previously unselected package python3-lz4. 145s Preparing to unpack .../142-python3-lz4_4.4.0+dfsg-1_amd64.deb ... 145s Unpacking python3-lz4 (4.4.0+dfsg-1) ... 145s Selecting previously unselected package python3-decorator. 145s Preparing to unpack .../143-python3-decorator_5.1.1-5_all.deb ... 145s Unpacking python3-decorator (5.1.1-5) ... 145s Selecting previously unselected package python3-scipy. 145s Preparing to unpack .../144-python3-scipy_1.14.1-4ubuntu1_amd64.deb ... 145s Unpacking python3-scipy (1.14.1-4ubuntu1) ... 146s Selecting previously unselected package python3-mpmath. 146s Preparing to unpack .../145-python3-mpmath_1.3.0-1_all.deb ... 146s Unpacking python3-mpmath (1.3.0-1) ... 146s Selecting previously unselected package python3-sympy. 146s Preparing to unpack .../146-python3-sympy_1.13.3-1_all.deb ... 146s Unpacking python3-sympy (1.13.3-1) ... 146s Selecting previously unselected package python3-ufolib2. 146s Preparing to unpack .../147-python3-ufolib2_0.17.0+dfsg1-1_all.deb ... 146s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ... 146s Selecting previously unselected package python3-unicodedata2. 146s Preparing to unpack .../148-python3-unicodedata2_15.1.0+ds-1build2_amd64.deb ... 146s Unpacking python3-unicodedata2 (15.1.0+ds-1build2) ... 146s Selecting previously unselected package unicode-data. 146s Preparing to unpack .../149-unicode-data_15.1.0-1_all.deb ... 146s Unpacking unicode-data (15.1.0-1) ... 147s Selecting previously unselected package python3-fonttools. 147s Preparing to unpack .../150-python3-fonttools_4.55.3-2_amd64.deb ... 147s Unpacking python3-fonttools (4.55.3-2) ... 147s Selecting previously unselected package python3-kiwisolver. 147s Preparing to unpack .../151-python3-kiwisolver_1.4.7-3_amd64.deb ... 147s Unpacking python3-kiwisolver (1.4.7-3) ... 147s Selecting previously unselected package python3-matplotlib. 147s Preparing to unpack .../152-python3-matplotlib_3.8.3-3ubuntu2_amd64.deb ... 147s Unpacking python3-matplotlib (3.8.3-3ubuntu2) ... 147s Selecting previously unselected package python3-sentry-sdk. 147s Preparing to unpack .../153-python3-sentry-sdk_2.18.0-1_all.deb ... 147s Unpacking python3-sentry-sdk (2.18.0-1) ... 147s Selecting previously unselected package python3-custodian. 147s Preparing to unpack .../154-python3-custodian_2024.10.16-1_all.deb ... 147s Unpacking python3-custodian (2024.10.16-1) ... 147s Selecting previously unselected package python3-dotenv. 147s Preparing to unpack .../155-python3-dotenv_1.0.1-1_all.deb ... 147s Unpacking python3-dotenv (1.0.1-1) ... 147s Selecting previously unselected package python3-latexcodec. 147s Preparing to unpack .../156-python3-latexcodec_3.0.0-1_all.deb ... 147s Unpacking python3-latexcodec (3.0.0-1) ... 147s Selecting previously unselected package python3-pybtex. 147s Preparing to unpack .../157-python3-pybtex_0.24.0-4_all.deb ... 147s Unpacking python3-pybtex (0.24.0-4) ... 147s Selecting previously unselected package python3-pydantic-settings. 147s Preparing to unpack .../158-python3-pydantic-settings_2.7.1-1_all.deb ... 147s Unpacking python3-pydantic-settings (2.7.1-1) ... 147s Selecting previously unselected package python3-joblib. 147s Preparing to unpack .../159-python3-joblib_1.4.2-2_all.deb ... 147s Unpacking python3-joblib (1.4.2-2) ... 147s Selecting previously unselected package python3-networkx. 147s Preparing to unpack .../160-python3-networkx_3.2.1-4ubuntu1_all.deb ... 147s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 148s Selecting previously unselected package python3-palettable. 148s Preparing to unpack .../161-python3-palettable_3.3.3-1_all.deb ... 148s Unpacking python3-palettable (3.3.3-1) ... 148s Selecting previously unselected package python3-fastjsonschema. 148s Preparing to unpack .../162-python3-fastjsonschema_2.21.1-1_all.deb ... 148s Unpacking python3-fastjsonschema (2.21.1-1) ... 148s Selecting previously unselected package python3-traitlets. 148s Preparing to unpack .../163-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 148s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 148s Selecting previously unselected package python3-jupyter-core. 148s Preparing to unpack .../164-python3-jupyter-core_5.7.2-5_all.deb ... 148s Unpacking python3-jupyter-core (5.7.2-5) ... 148s Selecting previously unselected package python3-nbformat. 148s Preparing to unpack .../165-python3-nbformat_5.9.1-1_all.deb ... 148s Unpacking python3-nbformat (5.9.1-1) ... 148s Selecting previously unselected package python3-tenacity. 148s Preparing to unpack .../166-python3-tenacity_9.0.0-0ubuntu1_all.deb ... 148s Unpacking python3-tenacity (9.0.0-0ubuntu1) ... 148s Selecting previously unselected package python3-plotly. 148s Preparing to unpack .../167-python3-plotly_5.20.0+dfsg-1_all.deb ... 148s Unpacking python3-plotly (5.20.0+dfsg-1) ... 150s Selecting previously unselected package python3-spglib. 150s Preparing to unpack .../168-python3-spglib_2.5.0-1ubuntu2_amd64.deb ... 150s Unpacking python3-spglib (2.5.0-1ubuntu2) ... 150s Selecting previously unselected package python3-tabulate. 150s Preparing to unpack .../169-python3-tabulate_0.9.0-1_all.deb ... 150s Unpacking python3-tabulate (0.9.0-1) ... 150s Selecting previously unselected package python3-uncertainties. 150s Preparing to unpack .../170-python3-uncertainties_3.2.2-1_all.deb ... 150s Unpacking python3-uncertainties (3.2.2-1) ... 150s Selecting previously unselected package python3-pymatgen. 150s Preparing to unpack .../171-python3-pymatgen_2024.10.29+dfsg1-5_amd64.deb ... 150s Unpacking python3-pymatgen (2024.10.29+dfsg1-5) ... 150s Selecting previously unselected package python3-openbabel. 150s Preparing to unpack .../172-python3-openbabel_3.1.1+dfsg-11ubuntu3_amd64.deb ... 150s Unpacking python3-openbabel (3.1.1+dfsg-11ubuntu3) ... 150s Selecting previously unselected package python3-openmm. 150s 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dh-python (6.20250108) ... 152s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 152s Setting up liblcms2-2:amd64 (2.16-2) ... 152s Setting up python3-iniconfig (1.1.1-2) ... 152s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 152s Setting up python3.12-minimal (3.12.9-1) ... 153s Setting up python3-orjson (3.10.7-2) ... 153s Setting up libnorm1t64:amd64 (1.5.9+dfsg-3.1build1) ... 153s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 153s Setting up libsodium23:amd64 (1.0.18-1build3) ... 153s Setting up python3-pydantic-core (2.27.2-1) ... 153s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 153s Setting up python3-async-generator (1.10-4) ... 153s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 153s Setting up python3-joblib (1.4.2-2) ... 153s Setting up python3-lz4 (4.4.0+dfsg-1) ... 154s Setting up libxcb-render0:amd64 (1.17.0-2) ... 154s Setting up libarchive-zip-perl (1.68-1) ... 154s Setting up python3-jsonlines (4.0.0-2) ... 154s Setting up python3-unicodedata2 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159s Setting up python3-annotated-types (0.7.0-1) ... 159s Setting up python3-platformdirs (4.3.6-1) ... 159s Setting up python3-psutil (5.9.8-2build3) ... 160s Setting up python3-tz (2025.1-3) ... 160s Setting up python3-fs (2.4.16-6) ... 160s Setting up unicode-data (15.1.0-1) ... 160s Setting up libsymspg2:amd64 (2.5.0-1ubuntu2) ... 160s Setting up python3-six (1.17.0-1) ... 160s Setting up python3-bson (4.10.1-5) ... 160s Setting up python3-palettable (3.3.3-1) ... 160s Setting up libpgm-5.3-0t64:amd64 (5.3.128~dfsg-2.1build1) ... 160s Setting up python3-decorator (5.1.1-5) ... 161s Setting up autotools-dev (20220109.1) ... 161s Setting up libblas3:amd64 (3.12.1-2) ... 161s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 161s Setting up python3-packaging (24.2-1) ... 161s Setting up python3-pyproject-hooks (1.2.0-1) ... 161s Setting up libboost-iostreams1.83.0:amd64 (1.83.0-4.1ubuntu1) ... 161s Setting up python3-jmespath (1.0.1-1) ... 161s Setting up python3-brotli (1.1.0-2build3) ... 161s Setting up libquadmath0:amd64 (15-20250213-1ubuntu1) ... 161s Setting up python3-cycler (0.12.1-1) ... 162s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 162s Setting up python3-sentry-sdk (2.18.0-1) ... 162s Setting up fonts-dejavu-mono (2.37-8) ... 162s Setting up python3-kiwisolver (1.4.7-3) ... 162s Setting up python3-aioitertools (0.12.0-1) ... 163s Setting up libmpc3:amd64 (1.3.1-1build2) ... 163s Setting up python3-wrapt (1.15.0-4) ... 163s Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... 163s Setting up autopoint (0.23.1-1) ... 163s Setting up fonts-dejavu-core (2.37-8) ... 163s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 163s Setting up python3-mongomock (4.3.0-2) ... 163s Setting up python3-toml (0.10.2-1) ... 163s Setting up python3-installer (0.7.0+dfsg1-3) ... 163s Setting up libgfortran5:amd64 (15-20250213-1ubuntu1) ... 163s Setting up autoconf (2.72-3) ... 163s Setting up python3-pluggy (1.5.0-1) ... 164s Setting up libwebp7:amd64 (1.5.0-0.1) ... 164s Setting up python3-pybtex (0.24.0-4) ... 164s Setting up libubsan1:amd64 (15-20250213-1ubuntu1) ... 164s Setting up python3-fastjsonschema (2.21.1-1) ... 164s Setting up python3-ruamel.yaml (0.18.10+ds-1) ... 164s Setting up dwz (0.15-1build6) ... 164s Setting up libhwasan0:amd64 (15-20250213-1ubuntu1) ... 164s Setting up python3-dnspython (2.7.0-1ubuntu1) ... 165s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 165s Setting up libasan8:amd64 (15-20250213-1ubuntu1) ... 165s Setting up libxslt1.1:amd64 (1.1.39-0exp1ubuntu2) ... 165s Setting up debugedit (1:5.1-2) ... 165s Setting up libopenjp2-7:amd64 (2.5.0-2ubuntu3) ... 165s Setting up libharfbuzz0b:amd64 (10.2.0-1) ... 165s Setting up python3-dateutil (2.9.0-3) ... 165s Setting up python3-email-validator (2.2.0-1) ... 166s Setting up python3-msgpack (1.0.3-3build3) ... 166s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 166s Setting up libtsan2:amd64 (15-20250213-1ubuntu1) ... 166s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 166s Setting up python3-mpmath (1.3.0-1) ... 166s Setting up libisl23:amd64 (0.27-1) ... 166s Setting up python3-build (1.2.2-1) ... 167s Setting up python3-pymongo (4.10.1-5) ... 167s Setting up python-matplotlib-data (3.8.3-3ubuntu2) ... 167s Setting up libwebpmux3:amd64 (1.5.0-0.1) ... 167s Setting up libinchi1.07 (1.07.2+dfsg-1) ... 167s Setting up libopenmm8.1 (8.1.2+dfsg-3) ... 167s Setting up python3-pydash (8.0.3-2) ... 168s Setting up libcc1-0:amd64 (15-20250213-1ubuntu1) ... 168s Setting up python3-jupyter-core (5.7.2-5) ... 168s Setting up liblsan0:amd64 (15-20250213-1ubuntu1) ... 168s Setting up python3-nacl (1.5.0-7) ... 168s Setting up libitm1:amd64 (15-20250213-1ubuntu1) ... 168s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 168s Setting up automake (1:1.17-3) ... 168s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 168s Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... 168s Setting up python3-sympy (1.13.3-1) ... 178s Setting up liblapack3:amd64 (3.12.1-2) ... 178s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 178s Setting up gettext (0.23.1-1) ... 178s Setting up libzmq5:amd64 (4.3.5-1build2) ... 178s Setting up python3-smart-open (7.1.0-1) ... 178s Setting up pybuild-plugin-pyproject (6.20250108) ... 178s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 178s Setting up python3-pytest (8.3.4-1) ... 179s Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... 179s Setting up python3-nbformat (5.9.1-1) ... 179s Setting up libopenmm-dev (8.1.2+dfsg-3) ... 179s Setting up python3-setuptools-scm (8.1.0-1) ... 179s Setting up intltool-debian (0.35.0+20060710.6) ... 179s Setting up libmaeparser1:amd64 (1.3.1-1build1) ... 179s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 179s Setting up python3-zmq (26.2.1-1) ... 179s Setting up python3-pydantic (2.10.6-1) ... 180s Setting up libraqm0:amd64 (0.10.2-1) ... 180s Setting up python3-botocore (1.36.9+repack-1) ... 181s Setting up cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu1) ... 181s Setting up python3-plotly (5.20.0+dfsg-1) ... 191s Setting up python3-numpy (1:1.26.4+ds-13) ... 194s Setting up cpp-14 (14.2.0-17ubuntu1) ... 194s Setting up python3-pytest-asyncio (0.25.1-1) ... 194s Setting up dh-strip-nondeterminism (1.14.1-2) ... 194s Setting up python3-openmm (8.1.2+dfsg-3) ... 194s /usr/lib/python3/dist-packages/openmm/__init__.py:16: SyntaxWarning: invalid escape sequence '\p' 194s os.environ['PATH'] = '%(lib)s;%(lib)s\plugins;%(path)s' % { 194s /usr/lib/python3/dist-packages/openmm/app/gromacsgrofile.py:62: SyntaxWarning: invalid escape sequence '\.' 194s return match('^[-+]?[0-9]*\.?[0-9]*([eEdD][-+]?[0-9]+)?$',word) 194s /usr/lib/python3/dist-packages/openmm/app/internal/amber_file_parser.py:65: SyntaxWarning: invalid escape sequence '\(' 194s FORMAT_RE_PATTERN=re.compile("([0-9]+)\(?([a-zA-Z]+)([0-9]+)\.?([0-9]*)\)?") 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbstructure.py:1071: SyntaxWarning: invalid escape sequence '\.' 194s if not re.match("pdb.%2s.\.ent\.gz" % subdir , pdb_file): 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbstructure.py:1082: SyntaxWarning: invalid escape sequence '\.' 194s if not re.match("pdb.%2s.\.ent\.gz" % subdir , pdb_file): 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:358: SyntaxWarning: invalid escape sequence '\S' 194s "(?:_(.+?)[.](\S+))" "|" # _category.attribute 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:360: SyntaxWarning: invalid escape sequence '\s' 194s "(?:['](.*?)(?:[']\s|[']$))" "|" # single quoted strings 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:361: SyntaxWarning: invalid escape sequence '\s' 194s "(?:[\"](.*?)(?:[\"]\s|[\"]$))" "|" # double quoted strings 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:363: SyntaxWarning: invalid escape sequence '\s' 194s "(?:\s*#.*$)" "|" # comments (dumped) 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:365: SyntaxWarning: invalid escape sequence '\S' 194s "(\S+)" # unquoted words 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:416: SyntaxWarning: invalid escape sequence '\S' 194s """ Tokenizer method for the mmCIF syntax file - 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:444: SyntaxWarning: invalid escape sequence '\S' 194s "(?:_(.+?)[.](\S+))" "|" # _category.attribute 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:446: SyntaxWarning: invalid escape sequence '\s' 194s "(?:['\"](.*?)(?:['\"]\s|['\"]$))" "|" # quoted strings 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:448: SyntaxWarning: invalid escape sequence '\s' 194s "(?:\s*#.*$)" "|" # comments (dumped) 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:450: SyntaxWarning: invalid escape sequence '\S' 194s "(\S+)" # unquoted words 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:347: SyntaxWarning: invalid escape sequence '\S' 194s "(?:_(.+?)[.](\S+))" "|" # _category.attribute 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:349: SyntaxWarning: invalid escape sequence '\s' 194s "(?:['](.*?)(?:[']\s|[']$))" "|" # single quoted strings 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:350: SyntaxWarning: invalid escape sequence '\s' 194s "(?:[\"](.*?)(?:[\"]\s|[\"]$))" "|" # double quoted strings 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:352: SyntaxWarning: invalid escape sequence '\s' 194s "(?:\s*#.*$)" "|" # comments (dumped) 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:354: SyntaxWarning: invalid escape sequence '\S' 194s "(\S+)" # unquoted words 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:419: SyntaxWarning: invalid escape sequence '\S' 194s "(?:_(.+?)[.](\S+))" "|" # _category.attribute 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:421: SyntaxWarning: invalid escape sequence '\s' 194s "(?:['\"](.*?)(?:['\"]\s|['\"]$))" "|" # quoted strings 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:423: SyntaxWarning: invalid escape sequence '\s' 194s "(?:\s*#.*$)" "|" # comments (dumped) 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:425: SyntaxWarning: invalid escape sequence '\S' 194s "(\S+)" # unquoted words 194s /usr/lib/python3/dist-packages/openmm/app/metadynamics.py:247: SyntaxWarning: invalid escape sequence '\.' 194s pattern = re.compile('bias_(.*)_(.*)\.npy') 194s /usr/lib/python3/dist-packages/openmm/openmm.py:6170: SyntaxWarning: invalid escape sequence '\S' 194s match = re.search("<([^?]\S*)", inputString) 194s /usr/lib/python3/dist-packages/openmm/__init__.py:16: SyntaxWarning: invalid escape sequence '\p' 194s os.environ['PATH'] = '%(lib)s;%(lib)s\plugins;%(path)s' % { 194s /usr/lib/python3/dist-packages/openmm/app/gromacsgrofile.py:62: SyntaxWarning: invalid escape sequence '\.' 194s return match('^[-+]?[0-9]*\.?[0-9]*([eEdD][-+]?[0-9]+)?$',word) 194s /usr/lib/python3/dist-packages/openmm/app/internal/amber_file_parser.py:65: SyntaxWarning: invalid escape sequence '\(' 194s FORMAT_RE_PATTERN=re.compile("([0-9]+)\(?([a-zA-Z]+)([0-9]+)\.?([0-9]*)\)?") 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbstructure.py:1071: SyntaxWarning: invalid escape sequence '\.' 194s if not re.match("pdb.%2s.\.ent\.gz" % subdir , pdb_file): 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbstructure.py:1082: SyntaxWarning: invalid escape sequence '\.' 194s if not re.match("pdb.%2s.\.ent\.gz" % subdir , pdb_file): 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:358: SyntaxWarning: invalid escape sequence '\S' 194s "(?:_(.+?)[.](\S+))" "|" # _category.attribute 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:360: SyntaxWarning: invalid escape sequence '\s' 194s "(?:['](.*?)(?:[']\s|[']$))" "|" # single quoted strings 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:361: SyntaxWarning: invalid escape sequence '\s' 194s "(?:[\"](.*?)(?:[\"]\s|[\"]$))" "|" # double quoted strings 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:363: SyntaxWarning: invalid escape sequence '\s' 194s "(?:\s*#.*$)" "|" # comments (dumped) 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:365: SyntaxWarning: invalid escape sequence '\S' 194s "(\S+)" # unquoted words 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:416: SyntaxWarning: invalid escape sequence '\S' 194s """ Tokenizer method for the mmCIF syntax file - 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:444: SyntaxWarning: invalid escape sequence '\S' 194s "(?:_(.+?)[.](\S+))" "|" # _category.attribute 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:446: SyntaxWarning: invalid escape sequence '\s' 194s "(?:['\"](.*?)(?:['\"]\s|['\"]$))" "|" # quoted strings 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:448: SyntaxWarning: invalid escape sequence '\s' 194s "(?:\s*#.*$)" "|" # comments (dumped) 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:450: SyntaxWarning: invalid escape sequence '\S' 194s "(\S+)" # unquoted words 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:347: SyntaxWarning: invalid escape sequence '\S' 194s "(?:_(.+?)[.](\S+))" "|" # _category.attribute 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:349: SyntaxWarning: invalid escape sequence '\s' 194s "(?:['](.*?)(?:[']\s|[']$))" "|" # single quoted strings 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:350: SyntaxWarning: invalid escape sequence '\s' 194s "(?:[\"](.*?)(?:[\"]\s|[\"]$))" "|" # double quoted strings 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:352: SyntaxWarning: invalid escape sequence '\s' 194s "(?:\s*#.*$)" "|" # comments (dumped) 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:354: SyntaxWarning: invalid escape sequence '\S' 194s "(\S+)" # unquoted words 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:419: SyntaxWarning: invalid escape sequence '\S' 194s "(?:_(.+?)[.](\S+))" "|" # _category.attribute 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:421: SyntaxWarning: invalid escape sequence '\s' 194s "(?:['\"](.*?)(?:['\"]\s|['\"]$))" "|" # quoted strings 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:423: SyntaxWarning: invalid escape sequence '\s' 194s "(?:\s*#.*$)" "|" # comments (dumped) 194s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:425: SyntaxWarning: invalid escape sequence '\S' 194s "(\S+)" # unquoted words 194s /usr/lib/python3/dist-packages/openmm/app/metadynamics.py:247: SyntaxWarning: invalid escape sequence '\.' 194s pattern = re.compile('bias_(.*)_(.*)\.npy') 194s /usr/lib/python3/dist-packages/openmm/openmm.py:6170: SyntaxWarning: invalid escape sequence '\S' 194s match = re.search("<([^?]\S*)", inputString) 194s Setting up python3-lxml:amd64 (5.3.1-1) ... 195s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 195s Setting up python3-contourpy (1.3.1-1) ... 195s Setting up python3-pydantic-settings (2.7.1-1) ... 195s Setting up libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 195s Setting up python3-paramiko (3.5.0-1ubuntu1) ... 195s Setting up libgcc-14-dev:amd64 (14.2.0-17ubuntu1) ... 195s Setting up python3-spglib (2.5.0-1ubuntu2) ... 196s Setting up libstdc++-14-dev:amd64 (14.2.0-17ubuntu1) ... 196s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 196s Setting up python3-uncertainties (3.2.2-1) ... 196s Setting up cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 196s Setting up libxft2:amd64 (2.3.6-1build1) ... 196s Setting up python3-scipy (1.14.1-4ubuntu1) ... 201s Setting up po-debconf (1.0.21+nmu1) ... 201s Setting up libtk8.6:amd64 (8.6.16-1) ... 201s Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-8) ... 201s Setting up python3-s3transfer (0.11.2-2) ... 201s Setting up python3.12-tk (3.12.9-1) ... 201s Setting up libcairo2:amd64 (1.18.2-2) ... 201s Setting up python3.13-tk (3.13.2-1) ... 201s Setting up python3-pil:amd64 (11.1.0-5) ... 202s Setting up python3-sshtunnel (0.1.4-3) ... 202s Setting up python3-pandas (2.2.3+dfsg-8) ... 209s Setting up python3-boto3 (1.36.0+dfsg-1) ... 210s Setting up cpp (4:14.2.0-1ubuntu1) ... 210s Setting up python3-monty (2025.1.9-1) ... 210s Setting up gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu1) ... 210s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 212s Setting up gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 212s Setting up python3-maggma (0.70.0-3) ... 212s Setting up blt (2.5.3+dfsg-7build1) ... 212s Setting up libopenbabel7 (3.1.1+dfsg-11ubuntu3) ... 212s Setting up python3-tk:amd64 (3.13.1-1) ... 212s Setting up gcc-14 (14.2.0-17ubuntu1) ... 212s Setting up python3-pil.imagetk:amd64 (11.1.0-5) ... 212s Setting up g++-14-x86-64-linux-gnu (14.2.0-17ubuntu1) ... 212s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 212s Setting up g++-14 (14.2.0-17ubuntu1) ... 212s Setting up python3-openbabel (3.1.1+dfsg-11ubuntu3) ... 212s Setting up libtool (2.5.4-3build1) ... 212s Setting up gcc (4:14.2.0-1ubuntu1) ... 212s Setting up dh-autoreconf (20) ... 212s Setting up g++ (4:14.2.0-1ubuntu1) ... 212s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 212s Setting up build-essential (12.10ubuntu1) ... 212s Setting up debhelper (13.24.1ubuntu2) ... 212s Setting up python3-fonttools (4.55.3-2) ... 212s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... 212s Setting up python3-matplotlib (3.8.3-3ubuntu2) ... 214s Setting up python3-pymatgen (2024.10.29+dfsg1-5) ... 217s Setting up python3-custodian (2024.10.16-1) ... 217s Setting up python3-emmet-core (0.84.2-2) ... 217s Setting up python3-mp-api (0.43.0rc0-1) ... 217s Processing triggers for libc-bin (2.40-4ubuntu1) ... 217s Processing triggers for systemd (257.2-3ubuntu1) ... 217s Processing triggers for man-db (2.13.0-1) ... 219s Processing triggers for install-info (7.1.1-1) ... 220s autopkgtest [04:30:53]: test command1: pytest-3 -k "not ( test_download_for_task_ids or test_get_phase_diagram_from_chemsys or test_get_trajectories )" 220s autopkgtest [04:30:53]: test command1: [----------------------- 230s ============================= test session starts ============================== 230s platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 230s rootdir: /tmp/autopkgtest.oC4iDr/build.QEu/src 230s configfile: pyproject.toml 230s testpaths: tests 230s plugins: asyncio-0.25.1, typeguard-4.4.1 230s asyncio: mode=Mode.STRICT, asyncio_default_fixture_loop_scope=function 230s collected 92 items / 2 deselected / 90 selected 230s 230s tests/materials/test_bonds.py s [ 1%] 230s tests/materials/test_chemenv.py s [ 2%] 230s tests/materials/test_dielectric.py s [ 3%] 230s tests/materials/test_elasticity.py s [ 4%] 230s tests/materials/test_electrodes.py s [ 5%] 230s tests/materials/test_electronic_structure.py sss [ 8%] 230s tests/materials/test_eos.py s [ 10%] 230s tests/materials/test_grain_boundary.py s [ 11%] 230s tests/materials/test_magnetism.py s [ 12%] 230s tests/materials/test_materials.py s [ 13%] 230s tests/materials/test_oxidation_states.py s [ 14%] 230s tests/materials/test_piezo.py s [ 15%] 230s tests/materials/test_provenance.py s [ 16%] 230s tests/materials/test_robocrys.py s [ 17%] 230s tests/materials/test_substrates.py s [ 18%] 230s tests/materials/test_summary.py s [ 20%] 230s tests/materials/test_surface_properties.py s [ 21%] 230s tests/materials/test_synthesis.py ssssssss [ 30%] 230s tests/materials/test_tasks.py s [ 31%] 230s tests/materials/test_thermo.py s [ 32%] 230s tests/materials/test_xas.py s [ 33%] 230s tests/molecules/test_jcesr.py s [ 34%] 230s tests/molecules/test_summary.py s [ 35%] 230s tests/test_client.py ssssssssssssssssssssssssssssss [ 68%] 230s tests/test_core_client.py sss. [ 73%] 230s tests/test_mprester.py ssssssssssssssssssssssss [100%] 230s 230s =============================== warnings summary =============================== 230s ../../../../usr/lib/python3/dist-packages/pydantic/_internal/_config.py:295 230s /usr/lib/python3/dist-packages/pydantic/_internal/_config.py:295: PydanticDeprecatedSince20: Support for class-based `config` is deprecated, use ConfigDict instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ 230s warnings.warn(DEPRECATION_MESSAGE, DeprecationWarning) 230s 230s ../../../../usr/lib/python3/dist-packages/pymatgen/analysis/gb/grain.py:7 230s /usr/lib/python3/dist-packages/pymatgen/analysis/gb/grain.py:7: DeprecationWarning: Grain boundary analysis has been moved to pymatgen.core.interface.This stub is retained for backwards compatibility and will be removed Dec 31 2024. 230s warnings.warn( 230s 230s ../../../../usr/lib/python3/dist-packages/emmet/core/vasp/calculation.py:304 230s /usr/lib/python3/dist-packages/emmet/core/vasp/calculation.py:304: PydanticDeprecatedSince20: `pydantic.config.Extra` is deprecated, use literal values instead (e.g. `extra='allow'`). Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ 230s class ElectronicStep(BaseModel, extra=Extra.allow): # type: ignore 230s 230s ../../../../usr/lib/python3/dist-packages/emmet/core/vasp/calculation.py:328 230s /usr/lib/python3/dist-packages/emmet/core/vasp/calculation.py:328: PydanticDeprecatedSince20: `pydantic.config.Extra` is deprecated, use literal values instead (e.g. `extra='allow'`). Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ 230s class IonicStep(BaseModel, extra=Extra.allow): # type: ignore 230s 230s ../../../../usr/lib/python3/dist-packages/pybtex/plugin/__init__.py:26 230s /usr/lib/python3/dist-packages/pybtex/plugin/__init__.py:26: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 230s import pkg_resources 230s 230s tests/materials/test_tasks.py:37 230s /tmp/autopkgtest.oC4iDr/build.QEu/src/tests/materials/test_tasks.py:37: DeprecationWarning: datetime.datetime.utcnow() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.now(datetime.UTC). 230s "last_updated": (None, datetime.utcnow()), 230s 230s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 230s =========================== short test summary info ============================ 230s SKIPPED [1] tests/materials/test_bonds.py:38: No API key found. 230s SKIPPED [1] tests/materials/test_chemenv.py:47: No API key found. 230s SKIPPED [1] tests/materials/test_dielectric.py:36: No API key found. 230s SKIPPED [1] tests/materials/test_elasticity.py:41: No API key found. 230s SKIPPED [1] tests/materials/test_electrodes.py:46: No API key found. 230s SKIPPED [1] tests/materials/test_electronic_structure.py:49: No API key found. 230s SKIPPED [1] tests/materials/test_electronic_structure.py:82: No API key found. 230s SKIPPED [1] tests/materials/test_electronic_structure.py:127: No API key found. 230s SKIPPED [1] tests/materials/test_eos.py:35: No API key found. 230s SKIPPED [1] tests/materials/test_grain_boundary.py:43: No API key found. 230s SKIPPED [1] tests/materials/test_magnetism.py:32: No API key found. 230s SKIPPED [1] tests/materials/test_materials.py:54: No API key found. 230s SKIPPED [1] tests/materials/test_oxidation_states.py:36: No API key found. 230s SKIPPED [1] tests/materials/test_piezo.py:34: No API key found. 230s SKIPPED [1] tests/materials/test_provenance.py:31: No API key found. 230s SKIPPED [1] tests/materials/test_robocrys.py:15: No API key found. 230s SKIPPED [1] tests/materials/test_substrates.py:42: No API key found. 230s SKIPPED [1] tests/materials/test_summary.py:62: No API key found. 230s SKIPPED [1] tests/materials/test_surface_properties.py:34: No API key found. 230s SKIPPED [1] tests/materials/test_synthesis.py:17: No API key found. 230s SKIPPED [1] tests/materials/test_synthesis.py:31: No API key found. 230s SKIPPED [1] tests/materials/test_synthesis.py:43: No API key found. 230s SKIPPED [1] tests/materials/test_synthesis.py:57: No API key found. 230s SKIPPED [1] tests/materials/test_synthesis.py:75: No API key found. 230s SKIPPED [1] tests/materials/test_synthesis.py:91: No API key found. 230s SKIPPED [1] tests/materials/test_synthesis.py:109: No API key found. 230s SKIPPED [1] tests/materials/test_synthesis.py:126: No API key found. 230s SKIPPED [1] tests/materials/test_tasks.py:42: No API key found. 230s SKIPPED [1] tests/materials/test_thermo.py:51: No API key found. 230s SKIPPED [1] tests/materials/test_xas.py:46: No API key found. 230s SKIPPED [1] tests/molecules/test_jcesr.py:38: No API key found. 230s SKIPPED [1] tests/molecules/test_summary.py:36: No API key found. 230s SKIPPED [30] tests/test_client.py:53: No API key found. 230s SKIPPED [1] tests/test_core_client.py:23: No API key found. 230s SKIPPED [1] tests/test_core_client.py:29: No API key found. 230s SKIPPED [1] tests/test_core_client.py:37: No API key found. 230s SKIPPED [1] tests/test_mprester.py:45: No API key found. 230s SKIPPED [1] tests/test_mprester.py:55: No API key found. 230s SKIPPED [1] tests/test_mprester.py:59: No API key found. 230s SKIPPED [1] tests/test_mprester.py:62: No API key found. 230s SKIPPED [1] tests/test_mprester.py:68: No API key found. 230s SKIPPED [1] tests/test_mprester.py:72: No API key found. 230s SKIPPED [1] tests/test_mprester.py:83: No API key found. 230s SKIPPED [1] tests/test_mprester.py:90: No API key found. 230s SKIPPED [1] tests/test_mprester.py:101: No API key found. 230s SKIPPED [1] tests/test_mprester.py:108: No API key found. 230s SKIPPED [1] tests/test_mprester.py:112: No API key found. 230s SKIPPED [1] tests/test_mprester.py:117: No API key found. 230s SKIPPED [1] tests/test_mprester.py:182: No API key found. 230s SKIPPED [1] tests/test_mprester.py:200: No API key found. 230s SKIPPED [1] tests/test_mprester.py:241: No API key found. 230s SKIPPED [1] tests/test_mprester.py:292: No API key found. 230s SKIPPED [1] tests/test_mprester.py:299: No API key found. 230s SKIPPED [1] tests/test_mprester.py:309: No API key found. 230s SKIPPED [1] tests/test_mprester.py:319: No API key found. 230s SKIPPED [1] tests/test_mprester.py:323: No API key found. 230s SKIPPED [1] tests/test_mprester.py:333: No API key found. 230s SKIPPED [1] tests/test_mprester.py:351: No API key found. 230s SKIPPED [1] tests/test_mprester.py:362: No API key found. 230s SKIPPED [1] tests/test_mprester.py:370: No API key found. 230s =========== 1 passed, 89 skipped, 2 deselected, 6 warnings in 9.27s ============ 231s autopkgtest [04:31:04]: test command1: -----------------------] 231s command1 PASS 231s autopkgtest [04:31:04]: test command1: - - - - - - - - - - results - - - - - - - - - - 231s autopkgtest [04:31:04]: @@@@@@@@@@@@@@@@@@@@ summary 231s command1 PASS 261s nova [W] Skipping flock for amd64 261s Creating nova instance adt-plucky-amd64-python-mp-api-20250219-042712-juju-7f2275-prod-proposed-migration-environment-15-9203ab98-9f1d-46d3-a84c-a231302c6aad from image adt/ubuntu-plucky-amd64-server-20250219.img (UUID 90711abf-916f-4a80-845a-825250a78697)... 261s nova [W] Timed out waiting for f24bde07-9ea5-4d30-ae18-6eea1f07a5c9 to get deleted.