0s autopkgtest [12:17:27]: starting date and time: 2025-02-19 12:17:27+0000 0s autopkgtest [12:17:27]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [12:17:27]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3pymwz59/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:sphinx --apt-upgrade python-h5netcdf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/8.1.3-5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@lcy02-8.secgroup --name adt-plucky-amd64-python-h5netcdf-20250219-121727-juju-7f2275-prod-proposed-migration-environment-15-40242445-1fc3-430b-b542-ce801912f049 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 48s autopkgtest [12:18:15]: testbed dpkg architecture: amd64 48s autopkgtest [12:18:15]: testbed apt version: 2.9.29 48s autopkgtest [12:18:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 48s autopkgtest [12:18:15]: testbed release detected to be: None 48s autopkgtest [12:18:15]: updating testbed package index (apt update) 48s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 49s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 49s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 49s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 49s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.9 kB] 49s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [750 kB] 49s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B] 49s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.1 kB] 49s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [101 kB] 49s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [81.8 kB] 49s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [7984 B] 49s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2412 B] 49s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [265 kB] 49s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [697 kB] 49s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [11.5 kB] 49s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [3128 B] 49s Fetched 2124 kB in 0s (5491 kB/s) 50s Reading package lists... 50s + lsb_release --codename --short 50s + RELEASE=plucky 50s + cat 50s + [ plucky != trusty ] 50s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 50s Reading package lists... 50s Building dependency tree... 50s Reading state information... 51s Calculating upgrade... 51s The following NEW packages will be installed: 51s libapt-pkg7.0 51s The following packages will be upgraded: 51s apt apt-utils iproute2 liblsof0 libp11-kit0 lsof rsyslog 51s 7 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 51s Need to get 5234 kB of archives. 51s After this operation, 4074 kB of additional disk space will be used. 51s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.30 [1131 kB] 51s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.30 [1434 kB] 51s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.30 [222 kB] 51s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 iproute2 amd64 6.13.0-1ubuntu1 [1277 kB] 51s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libp11-kit0 amd64 0.25.5-2ubuntu3 [311 kB] 51s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu1 [555 kB] 51s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 lsof amd64 4.99.4+dfsg-1 [245 kB] 51s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsof0 amd64 4.99.4+dfsg-1 [59.6 kB] 51s Preconfiguring packages ... 52s Fetched 5234 kB in 0s (20.6 MB/s) 52s Selecting previously unselected package libapt-pkg7.0:amd64. 52s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108925 files and directories currently installed.) 52s Preparing to unpack .../libapt-pkg7.0_2.9.30_amd64.deb ... 52s Unpacking libapt-pkg7.0:amd64 (2.9.30) ... 52s Setting up libapt-pkg7.0:amd64 (2.9.30) ... 52s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108974 files and directories currently installed.) 52s Preparing to unpack .../archives/apt_2.9.30_amd64.deb ... 52s Unpacking apt (2.9.30) over (2.9.29) ... 52s Setting up apt (2.9.30) ... 53s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108974 files and directories currently installed.) 53s Preparing to unpack .../0-apt-utils_2.9.30_amd64.deb ... 53s Unpacking apt-utils (2.9.30) over (2.9.29) ... 53s Preparing to unpack .../1-iproute2_6.13.0-1ubuntu1_amd64.deb ... 53s Unpacking iproute2 (6.13.0-1ubuntu1) over (6.10.0-2ubuntu1) ... 53s Preparing to unpack .../2-libp11-kit0_0.25.5-2ubuntu3_amd64.deb ... 53s Unpacking libp11-kit0:amd64 (0.25.5-2ubuntu3) over (0.25.5-2ubuntu2) ... 53s Preparing to unpack .../3-rsyslog_8.2412.0-2ubuntu1_amd64.deb ... 53s Unpacking rsyslog (8.2412.0-2ubuntu1) over (8.2412.0-1ubuntu1) ... 53s Preparing to unpack .../4-lsof_4.99.4+dfsg-1_amd64.deb ... 53s Unpacking lsof (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ... 53s Preparing to unpack .../5-liblsof0_4.99.4+dfsg-1_amd64.deb ... 53s Unpacking liblsof0 (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ... 53s Setting up apt-utils (2.9.30) ... 53s Setting up liblsof0 (4.99.4+dfsg-1) ... 53s Setting up iproute2 (6.13.0-1ubuntu1) ... 53s Setting up rsyslog (8.2412.0-2ubuntu1) ... 54s info: The user `syslog' is already a member of `adm'. 55s Setting up libp11-kit0:amd64 (0.25.5-2ubuntu3) ... 55s Setting up lsof (4.99.4+dfsg-1) ... 55s Processing triggers for man-db (2.13.0-1) ... 56s Processing triggers for libc-bin (2.40-4ubuntu1) ... 57s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 57s + /usr/lib/apt/apt-helper analyze-pattern ?true 57s + + sed s/\./\\./g 57s uname -r 57s + running_kernel_pattern=^linux-.*6\.12\.0-15-generic.* 57s + apt list ?obsolete 57s + tail -n+2 57s + grep -v+ cut -d/ -f1 57s ^linux-.*6\.12\.0-15-generic.* 58s + true 58s + obsolete_pkgs= 58s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove 58s Reading package lists... 58s Building dependency tree... 58s Reading state information... 59s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 59s + grep -q trusty /etc/lsb-release 59s + [ ! -d /usr/share/doc/unattended-upgrades ] 59s + [ ! -d /usr/share/doc/lxd ] 59s + [ ! -d /usr/share/doc/lxd-client ] 59s + [ ! -d /usr/share/doc/snapd ] 59s + type iptables 59s + cat 59s + chmod 755 /etc/rc.local 59s + . /etc/rc.local 59s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 59s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 59s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 59s + uname -m 59s + [ x86_64 = ppc64le ] 59s + [ -d /run/systemd/system ] 59s + systemd-detect-virt --quiet --vm 59s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 59s + cat 59s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 59s + echo COMPRESS=lz4 59s autopkgtest [12:18:26]: upgrading testbed (apt dist-upgrade and autopurge) 59s Reading package lists... 59s Building dependency tree... 59s Reading state information... 59s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 59s Starting 2 pkgProblemResolver with broken count: 0 59s Done 60s Entering ResolveByKeep 60s 61s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 61s Reading package lists... 61s Building dependency tree... 61s Reading state information... 61s Starting pkgProblemResolver with broken count: 0 61s Starting 2 pkgProblemResolver with broken count: 0 61s Done 62s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 62s autopkgtest [12:18:29]: rebooting testbed after setup commands that affected boot 65s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 77s autopkgtest [12:18:44]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Tue Feb 4 16:02:16 UTC 2025 78s autopkgtest [12:18:45]: @@@@@@@@@@@@@@@@@@@@ apt-source python-h5netcdf 79s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-h5netcdf 1.4.1-1 (dsc) [2388 B] 79s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-h5netcdf 1.4.1-1 (tar) [64.6 kB] 79s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-h5netcdf 1.4.1-1 (diff) [5168 B] 79s gpgv: Signature made Sun Nov 24 22:23:34 2024 UTC 79s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 79s gpgv: Can't check signature: No public key 79s dpkg-source: warning: cannot verify inline signature for ./python-h5netcdf_1.4.1-1.dsc: no acceptable signature found 79s autopkgtest [12:18:46]: testing package python-h5netcdf version 1.4.1-1 79s autopkgtest [12:18:46]: build not needed 79s autopkgtest [12:18:46]: test command1: preparing testbed 79s Reading package lists... 80s Building dependency tree... 80s Reading state information... 80s Starting pkgProblemResolver with broken count: 0 80s Starting 2 pkgProblemResolver with broken count: 0 80s Done 81s The following NEW packages will be installed: 81s libaec0 libblas3 libgfortran5 libhdf5-310 libhdf5-hl-310 libjs-jquery 81s libjs-sphinxdoc libjs-underscore liblapack3 liblzf1 libnetcdf22 libsz2 81s python-h5netcdf-doc python3-all python3-cftime python3-h5netcdf python3-h5py 81s python3-h5py-serial python3-iniconfig python3-netcdf4 python3-numpy 81s python3-packaging python3-pluggy python3-pytest python3.12 81s python3.12-minimal 81s 0 upgraded, 26 newly installed, 0 to remove and 0 not upgraded. 81s Need to get 18.9 MB of archives. 81s After this operation, 87.1 MB of additional disk space will be used. 81s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-minimal amd64 3.12.9-1 [2348 kB] 81s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12 amd64 3.12.9-1 [671 kB] 81s Get:3 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 81s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 81s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250213-1ubuntu1 [920 kB] 81s Get:6 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 81s Get:7 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 81s Get:8 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 81s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 81s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 81s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libjs-sphinxdoc all 8.1.3-5 [31.0 kB] 81s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 81s Get:13 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 81s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf22 amd64 1:4.9.3-1 [574 kB] 81s Get:15 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-h5netcdf-doc all 1.4.1-1 [52.9 kB] 81s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.13.1-1~exp2 [894 B] 81s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-13 [5319 kB] 81s Get:18 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cftime amd64 1.6.4-1build2 [346 kB] 81s Get:19 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py-serial amd64 3.12.1-1 [1677 kB] 81s Get:20 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py all 3.12.1-1 [7970 B] 81s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.2-1 [51.5 kB] 81s Get:22 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5netcdf all 1.4.1-1 [47.2 kB] 81s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 81s Get:24 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-netcdf4 amd64 1.7.2-1build3 [942 kB] 81s Get:25 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 81s Get:26 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.4-1 [252 kB] 81s Fetched 18.9 MB in 0s (52.3 MB/s) 81s Selecting previously unselected package python3.12-minimal. 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108975 files and directories currently installed.) 82s Preparing to unpack .../00-python3.12-minimal_3.12.9-1_amd64.deb ... 82s Unpacking python3.12-minimal (3.12.9-1) ... 82s Selecting previously unselected package python3.12. 82s Preparing to unpack .../01-python3.12_3.12.9-1_amd64.deb ... 82s Unpacking python3.12 (3.12.9-1) ... 82s Selecting previously unselected package libaec0:amd64. 82s Preparing to unpack .../02-libaec0_1.1.3-1_amd64.deb ... 82s Unpacking libaec0:amd64 (1.1.3-1) ... 82s Selecting previously unselected package libblas3:amd64. 82s Preparing to unpack .../03-libblas3_3.12.1-2_amd64.deb ... 82s Unpacking libblas3:amd64 (3.12.1-2) ... 82s Selecting previously unselected package libgfortran5:amd64. 82s Preparing to unpack .../04-libgfortran5_15-20250213-1ubuntu1_amd64.deb ... 82s Unpacking libgfortran5:amd64 (15-20250213-1ubuntu1) ... 82s Selecting previously unselected package libsz2:amd64. 82s Preparing to unpack .../05-libsz2_1.1.3-1_amd64.deb ... 82s Unpacking libsz2:amd64 (1.1.3-1) ... 82s Selecting previously unselected package libhdf5-310:amd64. 82s Preparing to unpack .../06-libhdf5-310_1.14.5+repack-3_amd64.deb ... 82s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... 82s Selecting previously unselected package libhdf5-hl-310:amd64. 82s Preparing to unpack .../07-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ... 82s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 82s Selecting previously unselected package libjs-jquery. 82s Preparing to unpack .../08-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 82s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 82s Selecting previously unselected package libjs-underscore. 82s Preparing to unpack .../09-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 82s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 82s Selecting previously unselected package libjs-sphinxdoc. 82s Preparing to unpack .../10-libjs-sphinxdoc_8.1.3-5_all.deb ... 82s Unpacking libjs-sphinxdoc (8.1.3-5) ... 82s Selecting previously unselected package liblapack3:amd64. 82s Preparing to unpack .../11-liblapack3_3.12.1-2_amd64.deb ... 82s Unpacking liblapack3:amd64 (3.12.1-2) ... 82s Selecting previously unselected package liblzf1:amd64. 82s Preparing to unpack .../12-liblzf1_3.6-4_amd64.deb ... 82s Unpacking liblzf1:amd64 (3.6-4) ... 82s Selecting previously unselected package libnetcdf22:amd64. 82s Preparing to unpack .../13-libnetcdf22_1%3a4.9.3-1_amd64.deb ... 82s Unpacking libnetcdf22:amd64 (1:4.9.3-1) ... 82s Selecting previously unselected package python-h5netcdf-doc. 82s Preparing to unpack .../14-python-h5netcdf-doc_1.4.1-1_all.deb ... 82s Unpacking python-h5netcdf-doc (1.4.1-1) ... 82s Selecting previously unselected package python3-all. 82s Preparing to unpack .../15-python3-all_3.13.1-1~exp2_amd64.deb ... 82s Unpacking python3-all (3.13.1-1~exp2) ... 82s Selecting previously unselected package python3-numpy. 82s Preparing to unpack .../16-python3-numpy_1%3a1.26.4+ds-13_amd64.deb ... 82s Unpacking python3-numpy (1:1.26.4+ds-13) ... 83s Selecting previously unselected package python3-cftime. 83s Preparing to unpack .../17-python3-cftime_1.6.4-1build2_amd64.deb ... 83s Unpacking python3-cftime (1.6.4-1build2) ... 83s Selecting previously unselected package python3-h5py-serial. 83s Preparing to unpack .../18-python3-h5py-serial_3.12.1-1_amd64.deb ... 83s Unpacking python3-h5py-serial (3.12.1-1) ... 83s Selecting previously unselected package python3-h5py. 83s Preparing to unpack .../19-python3-h5py_3.12.1-1_all.deb ... 83s Unpacking python3-h5py (3.12.1-1) ... 83s Selecting previously unselected package python3-packaging. 83s Preparing to unpack .../20-python3-packaging_24.2-1_all.deb ... 83s Unpacking python3-packaging (24.2-1) ... 83s Selecting previously unselected package python3-h5netcdf. 83s Preparing to unpack .../21-python3-h5netcdf_1.4.1-1_all.deb ... 83s Unpacking python3-h5netcdf (1.4.1-1) ... 83s Selecting previously unselected package python3-iniconfig. 83s Preparing to unpack .../22-python3-iniconfig_1.1.1-2_all.deb ... 83s Unpacking python3-iniconfig (1.1.1-2) ... 83s Selecting previously unselected package python3-netcdf4. 83s Preparing to unpack .../23-python3-netcdf4_1.7.2-1build3_amd64.deb ... 83s Unpacking python3-netcdf4 (1.7.2-1build3) ... 83s Selecting previously unselected package python3-pluggy. 83s Preparing to unpack .../24-python3-pluggy_1.5.0-1_all.deb ... 83s Unpacking python3-pluggy (1.5.0-1) ... 83s Selecting previously unselected package python3-pytest. 83s Preparing to unpack .../25-python3-pytest_8.3.4-1_all.deb ... 83s Unpacking python3-pytest (8.3.4-1) ... 83s Setting up python3-iniconfig (1.1.1-2) ... 83s Setting up python3.12-minimal (3.12.9-1) ... 84s Setting up python3.12 (3.12.9-1) ... 85s Setting up python3-all (3.13.1-1~exp2) ... 85s Setting up libaec0:amd64 (1.1.3-1) ... 85s Setting up libblas3:amd64 (3.12.1-2) ... 85s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 85s Setting up python3-packaging (24.2-1) ... 85s Setting up liblzf1:amd64 (3.6-4) ... 85s Setting up libgfortran5:amd64 (15-20250213-1ubuntu1) ... 85s Setting up python3-pluggy (1.5.0-1) ... 85s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 85s Setting up libsz2:amd64 (1.1.3-1) ... 85s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 85s Setting up liblapack3:amd64 (3.12.1-2) ... 85s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 85s Setting up python3-pytest (8.3.4-1) ... 86s Setting up python3-numpy (1:1.26.4+ds-13) ... 89s Setting up libjs-sphinxdoc (8.1.3-5) ... 89s Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... 89s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 89s Setting up libnetcdf22:amd64 (1:4.9.3-1) ... 89s Setting up python3-h5py-serial (3.12.1-1) ... 90s Setting up python-h5netcdf-doc (1.4.1-1) ... 90s Setting up python3-h5py (3.12.1-1) ... 90s Setting up python3-cftime (1.6.4-1build2) ... 90s Setting up python3-netcdf4 (1.7.2-1build3) ... 90s Setting up python3-h5netcdf (1.4.1-1) ... 90s Processing triggers for systemd (257.2-3ubuntu1) ... 90s Processing triggers for man-db (2.13.0-1) ... 91s Processing triggers for libc-bin (2.40-4ubuntu1) ... 91s autopkgtest [12:18:58]: test command1: set -e ; cp -a h5netcdf/tests "$AUTOPKGTEST_TMP" ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -m pytest -v tests -k "not ros3" ; done 91s autopkgtest [12:18:58]: test command1: [----------------------- 92s Testing with python3.12: 92s ============================= test session starts ============================== 92s platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.12 92s cachedir: .pytest_cache 92s rootdir: /tmp/autopkgtest.W5klp0/autopkgtest_tmp/tests 92s configfile: pytest.ini 92s plugins: typeguard-4.4.1 92s collecting ... collected 152 items / 1 deselected / 151 selected 92s 92s tests/test_h5netcdf.py::test_write_legacyapi_read_netCDF4 PASSED [ 0%] 93s tests/test_h5netcdf.py::test_roundtrip_h5netcdf_legacyapi PASSED [ 1%] 93s tests/test_h5netcdf.py::test_write_netCDF4_read_legacyapi PASSED [ 1%] 93s tests/test_h5netcdf.py::test_write_h5netcdf_read_legacyapi PASSED [ 2%] 93s tests/test_h5netcdf.py::test_write_h5netcdf_read_netCDF4 PASSED [ 3%] 93s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[testfile.nc-True] PASSED [ 3%] 93s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[testfile.nc-False] PASSED [ 4%] 93s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[hdf5://testfile-True] SKIPPED [ 5%] 93s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[hdf5://testfile-False] SKIPPED [ 5%] 93s tests/test_h5netcdf.py::test_write_netCDF4_read_h5netcdf[True] PASSED [ 6%] 93s tests/test_h5netcdf.py::test_write_netCDF4_read_h5netcdf[False] PASSED [ 7%] 93s tests/test_h5netcdf.py::test_write_legacyapi_read_h5netcdf[True] PASSED [ 7%] 93s tests/test_h5netcdf.py::test_write_legacyapi_read_h5netcdf[False] PASSED [ 8%] 93s tests/test_h5netcdf.py::test_fileobj[True] PASSED [ 9%] 93s tests/test_h5netcdf.py::test_fileobj[False] PASSED [ 9%] 93s tests/test_h5netcdf.py::test_h5py_file_obj[True] PASSED [ 10%] 93s tests/test_h5netcdf.py::test_h5py_file_obj[False] PASSED [ 11%] 93s tests/test_h5netcdf.py::test_repr[testfile.nc] PASSED [ 11%] 93s tests/test_h5netcdf.py::test_repr[hdf5://testfile] SKIPPED (h5pyd pa...) [ 12%] 93s tests/test_h5netcdf.py::test_attrs_api[testfile.nc] PASSED [ 13%] 93s tests/test_h5netcdf.py::test_attrs_api[hdf5://testfile] SKIPPED (h5p...) [ 13%] 93s tests/test_h5netcdf.py::test_shape_is_tied_to_coordinate[testfile.nc] PASSED [ 14%] 93s tests/test_h5netcdf.py::test_shape_is_tied_to_coordinate[hdf5://testfile] SKIPPED [ 15%] 93s tests/test_h5netcdf.py::test_optional_netcdf4_attrs[testfile.nc] PASSED [ 15%] 93s tests/test_h5netcdf.py::test_optional_netcdf4_attrs[hdf5://testfile] SKIPPED [ 16%] 93s tests/test_h5netcdf.py::test_error_handling[testfile.nc] PASSED [ 17%] 93s tests/test_h5netcdf.py::test_error_handling[hdf5://testfile] SKIPPED [ 17%] 93s tests/test_h5netcdf.py::test_decode_string_error[testfile.nc] PASSED [ 18%] 93s tests/test_h5netcdf.py::test_decode_string_error[hdf5://testfile] SKIPPED [ 19%] 93s tests/test_h5netcdf.py::test_invalid_netcdf4[testfile.nc] PASSED [ 19%] 93s tests/test_h5netcdf.py::test_invalid_netcdf4[hdf5://testfile] SKIPPED [ 20%] 93s tests/test_h5netcdf.py::test_fake_phony_dims[testfile.nc] PASSED [ 21%] 93s tests/test_h5netcdf.py::test_fake_phony_dims[hdf5://testfile] SKIPPED [ 21%] 93s tests/test_h5netcdf.py::test_invalid_netcdf4_mixed[testfile.nc] PASSED [ 22%] 93s tests/test_h5netcdf.py::test_invalid_netcdf4_mixed[hdf5://testfile] SKIPPED [ 23%] 93s tests/test_h5netcdf.py::test_invalid_netcdf_malformed_dimension_scales[testfile.nc] PASSED [ 23%] 93s tests/test_h5netcdf.py::test_invalid_netcdf_malformed_dimension_scales[hdf5://testfile] SKIPPED [ 24%] 93s tests/test_h5netcdf.py::test_hierarchical_access_auto_create[testfile.nc] PASSED [ 25%] 93s tests/test_h5netcdf.py::test_hierarchical_access_auto_create[hdf5://testfile] SKIPPED [ 25%] 93s tests/test_h5netcdf.py::test_Netcdf4Dimid[testfile.nc] PASSED [ 26%] 93s tests/test_h5netcdf.py::test_Netcdf4Dimid[hdf5://testfile] SKIPPED (...) [ 27%] 93s tests/test_h5netcdf.py::test_reading_str_array_from_netCDF4[True] PASSED [ 27%] 93s tests/test_h5netcdf.py::test_reading_str_array_from_netCDF4[False] PASSED [ 28%] 93s tests/test_h5netcdf.py::test_nc_properties_new[testfile.nc] PASSED [ 29%] 93s tests/test_h5netcdf.py::test_nc_properties_new[hdf5://testfile] SKIPPED [ 29%] 94s tests/test_h5netcdf.py::test_failed_read_open_and_clean_delete PASSED [ 30%] 94s tests/test_h5netcdf.py::test_create_variable_matching_saved_dimension[testfile.nc] PASSED [ 31%] 94s tests/test_h5netcdf.py::test_create_variable_matching_saved_dimension[hdf5://testfile] SKIPPED [ 31%] 94s tests/test_h5netcdf.py::test_invalid_netcdf_error[testfile.nc] PASSED [ 32%] 94s tests/test_h5netcdf.py::test_invalid_netcdf_error[hdf5://testfile] SKIPPED [ 33%] 94s tests/test_h5netcdf.py::test_invalid_netcdf_okay[testfile.nc] PASSED [ 33%] 94s tests/test_h5netcdf.py::test_invalid_netcdf_okay[hdf5://testfile] SKIPPED [ 34%] 94s tests/test_h5netcdf.py::test_invalid_netcdf_overwrite_valid PASSED [ 35%] 94s tests/test_h5netcdf.py::test_reopen_file_different_dimension_sizes PASSED [ 35%] 94s tests/test_h5netcdf.py::test_invalid_then_valid_no_ncproperties[testfile.nc] PASSED [ 36%] 94s tests/test_h5netcdf.py::test_invalid_then_valid_no_ncproperties[hdf5://testfile] SKIPPED [ 37%] 94s tests/test_h5netcdf.py::test_creating_and_resizing_unlimited_dimensions[testfile.nc] PASSED [ 37%] 94s tests/test_h5netcdf.py::test_creating_and_resizing_unlimited_dimensions[hdf5://testfile] SKIPPED [ 38%] 94s tests/test_h5netcdf.py::test_creating_variables_with_unlimited_dimensions[testfile.nc] PASSED [ 39%] 94s tests/test_h5netcdf.py::test_creating_variables_with_unlimited_dimensions[hdf5://testfile] SKIPPED [ 39%] 94s tests/test_h5netcdf.py::test_writing_to_an_unlimited_dimension[testfile.nc] PASSED [ 40%] 94s tests/test_h5netcdf.py::test_writing_to_an_unlimited_dimension[hdf5://testfile] SKIPPED [ 41%] 94s tests/test_h5netcdf.py::test_c_api_can_read_unlimited_dimensions PASSED [ 41%] 94s tests/test_h5netcdf.py::test_reading_unlimited_dimensions_created_with_c_api PASSED [ 42%] 94s tests/test_h5netcdf.py::test_reading_unused_unlimited_dimension[testfile.nc] PASSED [ 43%] 94s tests/test_h5netcdf.py::test_reading_unused_unlimited_dimension[hdf5://testfile] SKIPPED [ 43%] 94s tests/test_h5netcdf.py::test_reading_special_datatype_created_with_c_api PASSED [ 44%] 94s tests/test_h5netcdf.py::test_nc4_non_coord[testfile.nc] PASSED [ 45%] 94s tests/test_h5netcdf.py::test_nc4_non_coord[hdf5://testfile] SKIPPED [ 45%] 94s tests/test_h5netcdf.py::test_overwrite_existing_file PASSED [ 46%] 94s tests/test_h5netcdf.py::test_scales_on_append PASSED [ 47%] 94s tests/test_h5netcdf.py::test_create_attach_scales_netcdf4 PASSED [ 47%] 94s tests/test_h5netcdf.py::test_create_attach_scales_legacyapi PASSED [ 48%] 94s tests/test_h5netcdf.py::test_detach_scale[testfile.nc] PASSED [ 49%] 94s tests/test_h5netcdf.py::test_detach_scale[hdf5://testfile] SKIPPED (...) [ 49%] 94s tests/test_h5netcdf.py::test_is_scale[testfile.nc] PASSED [ 50%] 94s tests/test_h5netcdf.py::test_is_scale[hdf5://testfile] SKIPPED (h5py...) [ 50%] 94s tests/test_h5netcdf.py::test_get_dim_scale_refs[testfile.nc] PASSED [ 51%] 94s tests/test_h5netcdf.py::test_get_dim_scale_refs[hdf5://testfile] SKIPPED [ 52%] 94s tests/test_h5netcdf.py::test_dimensions[read_write_matrix0] PASSED [ 52%] 94s tests/test_h5netcdf.py::test_dimensions[read_write_matrix1] PASSED [ 53%] 94s tests/test_h5netcdf.py::test_dimensions[read_write_matrix2] PASSED [ 54%] 94s tests/test_h5netcdf.py::test_dimensions[read_write_matrix3] PASSED [ 54%] 94s tests/test_h5netcdf.py::test_dimensions[read_write_matrix4] PASSED [ 55%] 94s tests/test_h5netcdf.py::test_dimensions[read_write_matrix5] PASSED [ 56%] 94s tests/test_h5netcdf.py::test_dimensions[read_write_matrix6] PASSED [ 56%] 94s tests/test_h5netcdf.py::test_dimensions[read_write_matrix7] PASSED [ 57%] 94s tests/test_h5netcdf.py::test_dimensions[read_write_matrix8] PASSED [ 58%] 94s tests/test_h5netcdf.py::test_no_circular_references[testfile.nc] PASSED [ 58%] 94s tests/test_h5netcdf.py::test_no_circular_references[hdf5://testfile] SKIPPED [ 59%] 94s tests/test_h5netcdf.py::test_expanded_variables_netcdf4[netCDF4] PASSED [ 60%] 94s tests/test_h5netcdf.py::test_expanded_variables_netcdf4[h5netcdf.legacyapi] PASSED [ 60%] 94s tests/test_h5netcdf.py::test_creation_with_h5netcdf_edit_with_netcdf4 PASSED [ 61%] 94s tests/test_h5netcdf.py::test_track_order_specification PASSED [ 62%] 95s tests/test_h5netcdf.py::test_more_than_7_attr_creation PASSED [ 62%] 95s tests/test_h5netcdf.py::test_more_than_7_attr_creation_track_order[False] PASSED [ 63%] 95s tests/test_h5netcdf.py::test_more_than_7_attr_creation_track_order[True] PASSED [ 64%] 95s tests/test_h5netcdf.py::test_group_names PASSED [ 64%] 95s tests/test_h5netcdf.py::test_legacyapi_endianess[testfile.nc] PASSED [ 65%] 95s tests/test_h5netcdf.py::test_legacyapi_endianess[hdf5://testfile] SKIPPED [ 66%] 95s tests/test_h5netcdf.py::test_bool_slicing_length_one_dim PASSED [ 66%] 95s tests/test_h5netcdf.py::test_fancy_indexing[testfile.nc] PASSED [ 67%] 95s tests/test_h5netcdf.py::test_fancy_indexing[hdf5://testfile] SKIPPED [ 68%] 95s tests/test_h5netcdf.py::test_h5py_chunking PASSED [ 68%] 95s tests/test_h5netcdf.py::test_h5netcdf_chunking PASSED [ 69%] 95s tests/test_h5netcdf.py::test_create_invalid_netcdf_catch_error[testfile.nc] PASSED [ 70%] 95s tests/test_h5netcdf.py::test_create_invalid_netcdf_catch_error[hdf5://testfile] SKIPPED [ 70%] 95s tests/test_h5netcdf.py::test_dimensions_in_parent_groups PASSED [ 71%] 95s tests/test_h5netcdf.py::test_array_attributes PASSED [ 72%] 95s tests/test_h5netcdf.py::test_vlen_string_dataset_fillvalue[True] PASSED [ 72%] 95s tests/test_h5netcdf.py::test_vlen_string_dataset_fillvalue[False] PASSED [ 73%] 95s tests/test_h5netcdf.py::test_user_type_errors_new_api[testfile.nc] PASSED [ 74%] 95s tests/test_h5netcdf.py::test_user_type_errors_new_api[hdf5://testfile] SKIPPED [ 74%] 95s tests/test_h5netcdf.py::test_user_type_errors_legacyapi[testfile.nc] PASSED [ 75%] 95s tests/test_h5netcdf.py::test_user_type_errors_legacyapi[hdf5://testfile] SKIPPED [ 76%] 95s tests/test_h5netcdf.py::test_enum_type_errors_new_api[testfile.nc] PASSED [ 76%] 95s tests/test_h5netcdf.py::test_enum_type_errors_new_api[hdf5://testfile] SKIPPED [ 77%] 95s tests/test_h5netcdf.py::test_enum_type_errors_legacyapi[testfile.nc] PASSED [ 78%] 95s tests/test_h5netcdf.py::test_enum_type_errors_legacyapi[hdf5://testfile] SKIPPED [ 78%] 95s tests/test_h5netcdf.py::test_enum_type[testfile.nc] PASSED [ 79%] 95s tests/test_h5netcdf.py::test_enum_type[hdf5://testfile] SKIPPED (h5p...) [ 80%] 95s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-int] PASSED [ 80%] 95s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-int8] PASSED [ 81%] 95s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-uint16] PASSED [ 82%] 95s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-float32] PASSED [ 82%] 95s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-int64] PASSED [ 83%] 95s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-int] PASSED [ 84%] 95s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-int8] PASSED [ 84%] 95s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-uint16] PASSED [ 85%] 95s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-float32] PASSED [ 86%] 95s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-int64] PASSED [ 86%] 95s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-int] SKIPPED [ 87%] 95s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-int8] SKIPPED [ 88%] 95s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-uint16] SKIPPED [ 88%] 95s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-float32] SKIPPED [ 89%] 95s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-int64] SKIPPED [ 90%] 95s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-int] SKIPPED [ 90%] 95s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-int8] SKIPPED [ 91%] 95s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-uint16] SKIPPED [ 92%] 95s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-float32] SKIPPED [ 92%] 95s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-int64] SKIPPED [ 93%] 95s tests/test_h5netcdf.py::test_compoundtype_creation[testfile.nc-netCDF4] PASSED [ 94%] 95s tests/test_h5netcdf.py::test_compoundtype_creation[testfile.nc-h5netcdf.legacyapi] PASSED [ 94%] 95s tests/test_h5netcdf.py::test_compoundtype_creation[hdf5://testfile-netCDF4] SKIPPED [ 95%] 95s tests/test_h5netcdf.py::test_compoundtype_creation[hdf5://testfile-h5netcdf.legacyapi] SKIPPED [ 96%] 95s tests/test_h5netcdf.py::test_nc_complex_compatibility[testfile.nc-netCDF4] PASSED [ 96%] 95s tests/test_h5netcdf.py::test_nc_complex_compatibility[testfile.nc-h5netcdf.legacyapi] PASSED [ 97%] 95s tests/test_h5netcdf.py::test_nc_complex_compatibility[hdf5://testfile-netCDF4] SKIPPED [ 98%] 95s tests/test_h5netcdf.py::test_nc_complex_compatibility[hdf5://testfile-h5netcdf.legacyapi] SKIPPED [ 98%] 95s tests/test_h5netcdf.py::test_complex_type_creation_errors PASSED [ 99%] 95s tests/test_h5netcdf.py::test_hsds SKIPPED (h5pyd package not available) [100%] 95s 95s ================ 100 passed, 51 skipped, 1 deselected in 3.08s ================= 95s Testing with python3.13: 95s ============================= test session starts ============================== 95s platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.13 95s cachedir: .pytest_cache 95s rootdir: /tmp/autopkgtest.W5klp0/autopkgtest_tmp/tests 95s configfile: pytest.ini 95s plugins: typeguard-4.4.1 96s collecting ... collected 152 items / 1 deselected / 151 selected 96s 96s tests/test_h5netcdf.py::test_write_legacyapi_read_netCDF4 PASSED [ 0%] 96s tests/test_h5netcdf.py::test_roundtrip_h5netcdf_legacyapi PASSED [ 1%] 96s tests/test_h5netcdf.py::test_write_netCDF4_read_legacyapi PASSED [ 1%] 96s tests/test_h5netcdf.py::test_write_h5netcdf_read_legacyapi PASSED [ 2%] 96s tests/test_h5netcdf.py::test_write_h5netcdf_read_netCDF4 PASSED [ 3%] 96s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[testfile.nc-True] PASSED [ 3%] 96s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[testfile.nc-False] PASSED [ 4%] 96s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[hdf5://testfile-True] SKIPPED [ 5%] 96s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[hdf5://testfile-False] SKIPPED [ 5%] 96s tests/test_h5netcdf.py::test_write_netCDF4_read_h5netcdf[True] PASSED [ 6%] 96s tests/test_h5netcdf.py::test_write_netCDF4_read_h5netcdf[False] PASSED [ 7%] 96s tests/test_h5netcdf.py::test_write_legacyapi_read_h5netcdf[True] PASSED [ 7%] 96s tests/test_h5netcdf.py::test_write_legacyapi_read_h5netcdf[False] PASSED [ 8%] 96s tests/test_h5netcdf.py::test_fileobj[True] PASSED [ 9%] 96s tests/test_h5netcdf.py::test_fileobj[False] PASSED [ 9%] 96s tests/test_h5netcdf.py::test_h5py_file_obj[True] PASSED [ 10%] 97s tests/test_h5netcdf.py::test_h5py_file_obj[False] PASSED [ 11%] 97s tests/test_h5netcdf.py::test_repr[testfile.nc] PASSED [ 11%] 97s tests/test_h5netcdf.py::test_repr[hdf5://testfile] SKIPPED (h5pyd pa...) [ 12%] 97s tests/test_h5netcdf.py::test_attrs_api[testfile.nc] PASSED [ 13%] 97s tests/test_h5netcdf.py::test_attrs_api[hdf5://testfile] SKIPPED (h5p...) [ 13%] 97s tests/test_h5netcdf.py::test_shape_is_tied_to_coordinate[testfile.nc] PASSED [ 14%] 97s tests/test_h5netcdf.py::test_shape_is_tied_to_coordinate[hdf5://testfile] SKIPPED [ 15%] 97s tests/test_h5netcdf.py::test_optional_netcdf4_attrs[testfile.nc] PASSED [ 15%] 97s tests/test_h5netcdf.py::test_optional_netcdf4_attrs[hdf5://testfile] SKIPPED [ 16%] 97s tests/test_h5netcdf.py::test_error_handling[testfile.nc] PASSED [ 17%] 97s tests/test_h5netcdf.py::test_error_handling[hdf5://testfile] SKIPPED [ 17%] 97s tests/test_h5netcdf.py::test_decode_string_error[testfile.nc] PASSED [ 18%] 97s tests/test_h5netcdf.py::test_decode_string_error[hdf5://testfile] SKIPPED [ 19%] 97s tests/test_h5netcdf.py::test_invalid_netcdf4[testfile.nc] PASSED [ 19%] 97s tests/test_h5netcdf.py::test_invalid_netcdf4[hdf5://testfile] SKIPPED [ 20%] 97s tests/test_h5netcdf.py::test_fake_phony_dims[testfile.nc] PASSED [ 21%] 97s tests/test_h5netcdf.py::test_fake_phony_dims[hdf5://testfile] SKIPPED [ 21%] 97s tests/test_h5netcdf.py::test_invalid_netcdf4_mixed[testfile.nc] PASSED [ 22%] 97s tests/test_h5netcdf.py::test_invalid_netcdf4_mixed[hdf5://testfile] SKIPPED [ 23%] 97s tests/test_h5netcdf.py::test_invalid_netcdf_malformed_dimension_scales[testfile.nc] PASSED [ 23%] 97s tests/test_h5netcdf.py::test_invalid_netcdf_malformed_dimension_scales[hdf5://testfile] SKIPPED [ 24%] 97s tests/test_h5netcdf.py::test_hierarchical_access_auto_create[testfile.nc] PASSED [ 25%] 97s tests/test_h5netcdf.py::test_hierarchical_access_auto_create[hdf5://testfile] SKIPPED [ 25%] 97s tests/test_h5netcdf.py::test_Netcdf4Dimid[testfile.nc] PASSED [ 26%] 97s tests/test_h5netcdf.py::test_Netcdf4Dimid[hdf5://testfile] SKIPPED (...) [ 27%] 97s tests/test_h5netcdf.py::test_reading_str_array_from_netCDF4[True] PASSED [ 27%] 97s tests/test_h5netcdf.py::test_reading_str_array_from_netCDF4[False] PASSED [ 28%] 97s tests/test_h5netcdf.py::test_nc_properties_new[testfile.nc] PASSED [ 29%] 97s tests/test_h5netcdf.py::test_nc_properties_new[hdf5://testfile] SKIPPED [ 29%] 97s tests/test_h5netcdf.py::test_failed_read_open_and_clean_delete PASSED [ 30%] 97s tests/test_h5netcdf.py::test_create_variable_matching_saved_dimension[testfile.nc] PASSED [ 31%] 97s tests/test_h5netcdf.py::test_create_variable_matching_saved_dimension[hdf5://testfile] SKIPPED [ 31%] 97s tests/test_h5netcdf.py::test_invalid_netcdf_error[testfile.nc] PASSED [ 32%] 97s tests/test_h5netcdf.py::test_invalid_netcdf_error[hdf5://testfile] SKIPPED [ 33%] 97s tests/test_h5netcdf.py::test_invalid_netcdf_okay[testfile.nc] PASSED [ 33%] 97s tests/test_h5netcdf.py::test_invalid_netcdf_okay[hdf5://testfile] SKIPPED [ 34%] 97s tests/test_h5netcdf.py::test_invalid_netcdf_overwrite_valid PASSED [ 35%] 97s tests/test_h5netcdf.py::test_reopen_file_different_dimension_sizes PASSED [ 35%] 97s tests/test_h5netcdf.py::test_invalid_then_valid_no_ncproperties[testfile.nc] PASSED [ 36%] 97s tests/test_h5netcdf.py::test_invalid_then_valid_no_ncproperties[hdf5://testfile] SKIPPED [ 37%] 97s tests/test_h5netcdf.py::test_creating_and_resizing_unlimited_dimensions[testfile.nc] PASSED [ 37%] 97s tests/test_h5netcdf.py::test_creating_and_resizing_unlimited_dimensions[hdf5://testfile] SKIPPED [ 38%] 97s tests/test_h5netcdf.py::test_creating_variables_with_unlimited_dimensions[testfile.nc] PASSED [ 39%] 97s tests/test_h5netcdf.py::test_creating_variables_with_unlimited_dimensions[hdf5://testfile] SKIPPED [ 39%] 97s tests/test_h5netcdf.py::test_writing_to_an_unlimited_dimension[testfile.nc] PASSED [ 40%] 97s tests/test_h5netcdf.py::test_writing_to_an_unlimited_dimension[hdf5://testfile] SKIPPED [ 41%] 97s tests/test_h5netcdf.py::test_c_api_can_read_unlimited_dimensions PASSED [ 41%] 97s tests/test_h5netcdf.py::test_reading_unlimited_dimensions_created_with_c_api PASSED [ 42%] 97s tests/test_h5netcdf.py::test_reading_unused_unlimited_dimension[testfile.nc] PASSED [ 43%] 97s tests/test_h5netcdf.py::test_reading_unused_unlimited_dimension[hdf5://testfile] SKIPPED [ 43%] 97s tests/test_h5netcdf.py::test_reading_special_datatype_created_with_c_api PASSED [ 44%] 97s tests/test_h5netcdf.py::test_nc4_non_coord[testfile.nc] PASSED [ 45%] 97s tests/test_h5netcdf.py::test_nc4_non_coord[hdf5://testfile] SKIPPED [ 45%] 97s tests/test_h5netcdf.py::test_overwrite_existing_file PASSED [ 46%] 97s tests/test_h5netcdf.py::test_scales_on_append PASSED [ 47%] 97s tests/test_h5netcdf.py::test_create_attach_scales_netcdf4 PASSED [ 47%] 97s tests/test_h5netcdf.py::test_create_attach_scales_legacyapi PASSED [ 48%] 97s tests/test_h5netcdf.py::test_detach_scale[testfile.nc] PASSED [ 49%] 97s tests/test_h5netcdf.py::test_detach_scale[hdf5://testfile] SKIPPED (...) [ 49%] 97s tests/test_h5netcdf.py::test_is_scale[testfile.nc] PASSED [ 50%] 97s tests/test_h5netcdf.py::test_is_scale[hdf5://testfile] SKIPPED (h5py...) [ 50%] 97s tests/test_h5netcdf.py::test_get_dim_scale_refs[testfile.nc] PASSED [ 51%] 97s tests/test_h5netcdf.py::test_get_dim_scale_refs[hdf5://testfile] SKIPPED [ 52%] 97s tests/test_h5netcdf.py::test_dimensions[read_write_matrix0] PASSED [ 52%] 97s tests/test_h5netcdf.py::test_dimensions[read_write_matrix1] PASSED [ 53%] 97s tests/test_h5netcdf.py::test_dimensions[read_write_matrix2] PASSED [ 54%] 97s tests/test_h5netcdf.py::test_dimensions[read_write_matrix3] PASSED [ 54%] 97s tests/test_h5netcdf.py::test_dimensions[read_write_matrix4] PASSED [ 55%] 97s tests/test_h5netcdf.py::test_dimensions[read_write_matrix5] PASSED [ 56%] 97s tests/test_h5netcdf.py::test_dimensions[read_write_matrix6] PASSED [ 56%] 97s tests/test_h5netcdf.py::test_dimensions[read_write_matrix7] PASSED [ 57%] 98s tests/test_h5netcdf.py::test_dimensions[read_write_matrix8] PASSED [ 58%] 98s tests/test_h5netcdf.py::test_no_circular_references[testfile.nc] PASSED [ 58%] 98s tests/test_h5netcdf.py::test_no_circular_references[hdf5://testfile] SKIPPED [ 59%] 98s tests/test_h5netcdf.py::test_expanded_variables_netcdf4[netCDF4] PASSED [ 60%] 98s tests/test_h5netcdf.py::test_expanded_variables_netcdf4[h5netcdf.legacyapi] PASSED [ 60%] 98s tests/test_h5netcdf.py::test_creation_with_h5netcdf_edit_with_netcdf4 PASSED [ 61%] 98s tests/test_h5netcdf.py::test_track_order_specification PASSED [ 62%] 98s tests/test_h5netcdf.py::test_more_than_7_attr_creation PASSED [ 62%] 98s tests/test_h5netcdf.py::test_more_than_7_attr_creation_track_order[False] PASSED [ 63%] 98s tests/test_h5netcdf.py::test_more_than_7_attr_creation_track_order[True] PASSED [ 64%] 98s tests/test_h5netcdf.py::test_group_names PASSED [ 64%] 98s tests/test_h5netcdf.py::test_legacyapi_endianess[testfile.nc] PASSED [ 65%] 98s tests/test_h5netcdf.py::test_legacyapi_endianess[hdf5://testfile] SKIPPED [ 66%] 98s tests/test_h5netcdf.py::test_bool_slicing_length_one_dim PASSED [ 66%] 98s tests/test_h5netcdf.py::test_fancy_indexing[testfile.nc] PASSED [ 67%] 98s tests/test_h5netcdf.py::test_fancy_indexing[hdf5://testfile] SKIPPED [ 68%] 98s tests/test_h5netcdf.py::test_h5py_chunking PASSED [ 68%] 98s tests/test_h5netcdf.py::test_h5netcdf_chunking PASSED [ 69%] 98s tests/test_h5netcdf.py::test_create_invalid_netcdf_catch_error[testfile.nc] PASSED [ 70%] 98s tests/test_h5netcdf.py::test_create_invalid_netcdf_catch_error[hdf5://testfile] SKIPPED [ 70%] 98s tests/test_h5netcdf.py::test_dimensions_in_parent_groups PASSED [ 71%] 98s tests/test_h5netcdf.py::test_array_attributes PASSED [ 72%] 98s tests/test_h5netcdf.py::test_vlen_string_dataset_fillvalue[True] PASSED [ 72%] 98s tests/test_h5netcdf.py::test_vlen_string_dataset_fillvalue[False] PASSED [ 73%] 98s tests/test_h5netcdf.py::test_user_type_errors_new_api[testfile.nc] PASSED [ 74%] 98s tests/test_h5netcdf.py::test_user_type_errors_new_api[hdf5://testfile] SKIPPED [ 74%] 98s tests/test_h5netcdf.py::test_user_type_errors_legacyapi[testfile.nc] PASSED [ 75%] 98s tests/test_h5netcdf.py::test_user_type_errors_legacyapi[hdf5://testfile] SKIPPED [ 76%] 98s tests/test_h5netcdf.py::test_enum_type_errors_new_api[testfile.nc] PASSED [ 76%] 98s tests/test_h5netcdf.py::test_enum_type_errors_new_api[hdf5://testfile] SKIPPED [ 77%] 98s tests/test_h5netcdf.py::test_enum_type_errors_legacyapi[testfile.nc] PASSED [ 78%] 98s tests/test_h5netcdf.py::test_enum_type_errors_legacyapi[hdf5://testfile] SKIPPED [ 78%] 98s tests/test_h5netcdf.py::test_enum_type[testfile.nc] PASSED [ 79%] 98s tests/test_h5netcdf.py::test_enum_type[hdf5://testfile] SKIPPED (h5p...) [ 80%] 98s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-int] PASSED [ 80%] 98s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-int8] PASSED [ 81%] 98s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-uint16] PASSED [ 82%] 98s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-float32] PASSED [ 82%] 98s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-int64] PASSED [ 83%] 98s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-int] PASSED [ 84%] 98s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-int8] PASSED [ 84%] 98s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-uint16] PASSED [ 85%] 98s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-float32] PASSED [ 86%] 98s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-int64] PASSED [ 86%] 98s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-int] SKIPPED [ 87%] 98s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-int8] SKIPPED [ 88%] 98s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-uint16] SKIPPED [ 88%] 98s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-float32] SKIPPED [ 89%] 98s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-int64] SKIPPED [ 90%] 98s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-int] SKIPPED [ 90%] 98s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-int8] SKIPPED [ 91%] 98s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-uint16] SKIPPED [ 92%] 98s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-float32] SKIPPED [ 92%] 98s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-int64] SKIPPED [ 93%] 98s tests/test_h5netcdf.py::test_compoundtype_creation[testfile.nc-netCDF4] PASSED [ 94%] 98s tests/test_h5netcdf.py::test_compoundtype_creation[testfile.nc-h5netcdf.legacyapi] PASSED [ 94%] 98s tests/test_h5netcdf.py::test_compoundtype_creation[hdf5://testfile-netCDF4] SKIPPED [ 95%] 98s tests/test_h5netcdf.py::test_compoundtype_creation[hdf5://testfile-h5netcdf.legacyapi] SKIPPED [ 96%] 98s tests/test_h5netcdf.py::test_nc_complex_compatibility[testfile.nc-netCDF4] PASSED [ 96%] 98s tests/test_h5netcdf.py::test_nc_complex_compatibility[testfile.nc-h5netcdf.legacyapi] PASSED [ 97%] 98s tests/test_h5netcdf.py::test_nc_complex_compatibility[hdf5://testfile-netCDF4] SKIPPED [ 98%] 98s tests/test_h5netcdf.py::test_nc_complex_compatibility[hdf5://testfile-h5netcdf.legacyapi] SKIPPED [ 98%] 98s tests/test_h5netcdf.py::test_complex_type_creation_errors PASSED [ 99%] 98s tests/test_h5netcdf.py::test_hsds SKIPPED (h5pyd package not available) [100%] 98s 98s ================ 100 passed, 51 skipped, 1 deselected in 2.97s ================= 99s autopkgtest [12:19:06]: test command1: -----------------------] 99s command1 PASS 99s autopkgtest [12:19:06]: test command1: - - - - - - - - - - results - - - - - - - - - - 99s autopkgtest [12:19:06]: test command2: preparing testbed 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 100s Starting pkgProblemResolver with broken count: 0 100s Starting 2 pkgProblemResolver with broken count: 0 100s Done 100s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 101s autopkgtest [12:19:08]: test command2: set -e ; cp -a h5netcdf/tests "$AUTOPKGTEST_TMP" ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -m pytest -v tests -k ros3 ; done 101s autopkgtest [12:19:08]: test command2: [----------------------- 101s Testing with python3.12: 101s ============================= test session starts ============================== 101s platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.12 101s cachedir: .pytest_cache 101s rootdir: /tmp/autopkgtest.W5klp0/autopkgtest_tmp/tests 101s configfile: pytest.ini 101s plugins: typeguard-4.4.1 101s collecting ... collected 152 items / 151 deselected / 1 selected 101s 103s tests/test_h5netcdf.py::test_ros3 PASSED [100%] 103s 103s ====================== 1 passed, 151 deselected in 2.48s ======================= 103s Testing with python3.13: 104s ============================= test session starts ============================== 104s platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.13 104s cachedir: .pytest_cache 104s rootdir: /tmp/autopkgtest.W5klp0/autopkgtest_tmp/tests 104s configfile: pytest.ini 104s plugins: typeguard-4.4.1 104s collecting ... collected 152 items / 151 deselected / 1 selected 104s 105s tests/test_h5netcdf.py::test_ros3 PASSED [100%] 105s 105s ====================== 1 passed, 151 deselected in 1.75s ======================= 106s autopkgtest [12:19:13]: test command2: -----------------------] 106s command2 PASS 106s autopkgtest [12:19:13]: test command2: - - - - - - - - - - results - - - - - - - - - - 106s autopkgtest [12:19:13]: @@@@@@@@@@@@@@@@@@@@ summary 106s command1 PASS 106s command2 PASS 121s nova [W] Skipping flock for amd64 121s Creating nova instance adt-plucky-amd64-python-h5netcdf-20250219-121727-juju-7f2275-prod-proposed-migration-environment-15-40242445-1fc3-430b-b542-ce801912f049 from image adt/ubuntu-plucky-amd64-server-20250218.img (UUID 0c5f6311-785d-4524-a0d8-db541aaf5c09)... 121s nova [W] Timed out waiting for 227a3356-4a4e-4d9f-9ce3-1f39c9a3aa29 to get deleted.