0s autopkgtest [19:03:31]: starting date and time: 2024-11-18 19:03:31+0000 0s autopkgtest [19:03:31]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [19:03:31]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.zzq383ft/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:h5py,src:openmpi,src:sphinx-rtd-theme --apt-upgrade python-h5netcdf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=h5py/3.11.0-8ubuntu1 openmpi/5.0.5-6 sphinx-rtd-theme/3.0.2+dfsg-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-25.secgroup --name adt-plucky-amd64-python-h5netcdf-20241118-190331-juju-7f2275-prod-proposed-migration-environment-15-f7a3c5b6-b7a5-416c-8882-213f482d9b66 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 41s autopkgtest [19:04:12]: testbed dpkg architecture: amd64 41s autopkgtest [19:04:12]: testbed apt version: 2.9.8 41s autopkgtest [19:04:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup 42s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 43s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 43s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [72.2 kB] 43s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [815 kB] 43s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.5 kB] 43s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [111 kB] 43s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [64.6 kB] 43s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 43s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [659 kB] 43s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [258 kB] 43s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [772 B] 43s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [7272 B] 43s Fetched 2115 kB in 1s (2692 kB/s) 43s Reading package lists... 45s Reading package lists... 46s Building dependency tree... 46s Reading state information... 46s Calculating upgrade... 46s The following NEW packages will be installed: 46s liblsof0 46s The following packages will be upgraded: 46s libnvme1t64 linux-firmware lsof 46s 3 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 46s Need to get 538 MB of archives. 46s After this operation, 1578 kB of additional disk space will be used. 46s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsof0 amd64 4.99.3+dfsg-2 [59.4 kB] 46s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 lsof amd64 4.99.3+dfsg-2 [245 kB] 46s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libnvme1t64 amd64 1.11.1-1 [88.7 kB] 46s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20241118.git6e4e94b0-0ubuntu1 [537 MB] 81s Fetched 538 MB in 35s (15.5 MB/s) 81s Selecting previously unselected package liblsof0. 81s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75590 files and directories currently installed.) 81s Preparing to unpack .../liblsof0_4.99.3+dfsg-2_amd64.deb ... 81s Unpacking liblsof0 (4.99.3+dfsg-2) ... 81s Preparing to unpack .../lsof_4.99.3+dfsg-2_amd64.deb ... 81s Unpacking lsof (4.99.3+dfsg-2) over (4.95.0-1.1) ... 81s Preparing to unpack .../libnvme1t64_1.11.1-1_amd64.deb ... 81s Unpacking libnvme1t64 (1.11.1-1) over (1.11-2) ... 81s Preparing to unpack .../linux-firmware_20241118.git6e4e94b0-0ubuntu1_amd64.deb ... 81s Unpacking linux-firmware (20241118.git6e4e94b0-0ubuntu1) over (20241108.git3bbb13a7-0ubuntu1) ... 84s Setting up linux-firmware (20241118.git6e4e94b0-0ubuntu1) ... 84s Setting up liblsof0 (4.99.3+dfsg-2) ... 84s Setting up libnvme1t64 (1.11.1-1) ... 84s Setting up lsof (4.99.3+dfsg-2) ... 84s Processing triggers for man-db (2.13.0-1) ... 84s Processing triggers for libc-bin (2.40-1ubuntu3) ... 84s Processing triggers for initramfs-tools (0.142ubuntu35) ... 84s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 84s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 92s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 93s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 93s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 93s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 93s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 93s Reading package lists... 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s Calculating upgrade... 94s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s autopkgtest [19:05:06]: rebooting testbed after setup commands that affected boot 98s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 112s autopkgtest [19:05:23]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 115s autopkgtest [19:05:26]: @@@@@@@@@@@@@@@@@@@@ apt-source python-h5netcdf 117s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-h5netcdf 1.4.0-3 (dsc) [2388 B] 117s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-h5netcdf 1.4.0-3 (tar) [64.6 kB] 117s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-h5netcdf 1.4.0-3 (diff) [6016 B] 117s gpgv: Signature made Tue Nov 12 23:12:03 2024 UTC 117s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 117s gpgv: Can't check signature: No public key 117s dpkg-source: warning: cannot verify inline signature for ./python-h5netcdf_1.4.0-3.dsc: no acceptable signature found 117s autopkgtest [19:05:28]: testing package python-h5netcdf version 1.4.0-3 117s autopkgtest [19:05:28]: build not needed 118s autopkgtest [19:05:29]: test command1: preparing testbed 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Starting pkgProblemResolver with broken count: 0 119s Starting 2 pkgProblemResolver with broken count: 0 119s Done 119s The following additional packages will be installed: 119s libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 119s libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblzf1 119s libnetcdf19t64 libsz2 python-h5netcdf-doc python3-all python3-cftime 119s python3-h5netcdf python3-h5py python3-h5py-serial python3-iniconfig 119s python3-netcdf4 python3-numpy python3-packaging python3-pluggy 119s python3-pytest 119s Suggested packages: 119s python-h5py-doc gcc gfortran python-numpy-doc python3-dev 119s Recommended packages: 119s javascript-common 119s The following NEW packages will be installed: 119s autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1t64 119s libhdf5-hl-100t64 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 119s liblzf1 libnetcdf19t64 libsz2 python-h5netcdf-doc python3-all python3-cftime 119s python3-h5netcdf python3-h5py python3-h5py-serial python3-iniconfig 119s python3-netcdf4 python3-numpy python3-packaging python3-pluggy 119s python3-pytest 119s 0 upgraded, 25 newly installed, 0 to remove and 0 not upgraded. 119s Need to get 15.0 MB/15.0 MB of archives. 119s After this operation, 75.4 MB of additional disk space will be used. 119s Get:1 /tmp/autopkgtest.G1fu0s/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [732 B] 120s Get:2 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 120s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 120s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 120s Get:5 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 120s Get:6 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 120s Get:7 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB] 120s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 120s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 120s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 120s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 121s Get:12 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 121s Get:13 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6ubuntu1 [472 kB] 121s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-h5netcdf-doc all 1.4.0-3 [52.8 kB] 121s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.12.6-0ubuntu1 [886 B] 121s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11ubuntu1 [5319 kB] 121s Get:17 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cftime amd64 1.6.4-1build1 [346 kB] 121s Get:18 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-h5py-serial amd64 3.11.0-8ubuntu1 [1686 kB] 121s Get:19 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-h5py all 3.11.0-8ubuntu1 [7982 B] 121s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.2-1 [51.5 kB] 121s Get:21 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5netcdf all 1.4.0-3 [47.2 kB] 121s Get:22 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 121s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-netcdf4 amd64 1.7.2-1build1 [942 kB] 121s Get:24 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 121s Get:25 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 122s Fetched 15.0 MB in 2s (7613 kB/s) 122s Selecting previously unselected package libaec0:amd64. 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75620 files and directories currently installed.) 122s Preparing to unpack .../00-libaec0_1.1.3-1_amd64.deb ... 122s Unpacking libaec0:amd64 (1.1.3-1) ... 122s Selecting previously unselected package libblas3:amd64. 122s Preparing to unpack .../01-libblas3_3.12.0-3build2_amd64.deb ... 122s Unpacking libblas3:amd64 (3.12.0-3build2) ... 122s Selecting previously unselected package libgfortran5:amd64. 122s Preparing to unpack .../02-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 122s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 122s Selecting previously unselected package libsz2:amd64. 122s Preparing to unpack .../03-libsz2_1.1.3-1_amd64.deb ... 122s Unpacking libsz2:amd64 (1.1.3-1) ... 122s Selecting previously unselected package libhdf5-103-1t64:amd64. 122s Preparing to unpack .../04-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 122s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 122s Selecting previously unselected package libhdf5-hl-100t64:amd64. 122s Preparing to unpack .../05-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 122s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 122s Selecting previously unselected package libjs-jquery. 122s Preparing to unpack .../06-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 122s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 122s Selecting previously unselected package libjs-underscore. 122s Preparing to unpack .../07-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 122s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 122s Selecting previously unselected package libjs-sphinxdoc. 122s Preparing to unpack .../08-libjs-sphinxdoc_7.4.7-4_all.deb ... 122s Unpacking libjs-sphinxdoc (7.4.7-4) ... 122s Selecting previously unselected package liblapack3:amd64. 122s Preparing to unpack .../09-liblapack3_3.12.0-3build2_amd64.deb ... 122s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 122s Selecting previously unselected package liblzf1:amd64. 122s Preparing to unpack .../10-liblzf1_3.6-4_amd64.deb ... 122s Unpacking liblzf1:amd64 (3.6-4) ... 122s Selecting previously unselected package libnetcdf19t64:amd64. 122s Preparing to unpack .../11-libnetcdf19t64_1%3a4.9.2-6ubuntu1_amd64.deb ... 122s Unpacking libnetcdf19t64:amd64 (1:4.9.2-6ubuntu1) ... 122s Selecting previously unselected package python-h5netcdf-doc. 122s Preparing to unpack .../12-python-h5netcdf-doc_1.4.0-3_all.deb ... 122s Unpacking python-h5netcdf-doc (1.4.0-3) ... 122s Selecting previously unselected package python3-all. 122s Preparing to unpack .../13-python3-all_3.12.6-0ubuntu1_amd64.deb ... 122s Unpacking python3-all (3.12.6-0ubuntu1) ... 122s Selecting previously unselected package python3-numpy. 122s Preparing to unpack .../14-python3-numpy_1%3a1.26.4+ds-11ubuntu1_amd64.deb ... 122s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 123s Selecting previously unselected package python3-cftime. 123s Preparing to unpack .../15-python3-cftime_1.6.4-1build1_amd64.deb ... 123s Unpacking python3-cftime (1.6.4-1build1) ... 123s Selecting previously unselected package python3-h5py-serial. 123s Preparing to unpack .../16-python3-h5py-serial_3.11.0-8ubuntu1_amd64.deb ... 123s Unpacking python3-h5py-serial (3.11.0-8ubuntu1) ... 123s Selecting previously unselected package python3-h5py. 123s Preparing to unpack .../17-python3-h5py_3.11.0-8ubuntu1_all.deb ... 123s Unpacking python3-h5py (3.11.0-8ubuntu1) ... 123s Selecting previously unselected package python3-packaging. 123s Preparing to unpack .../18-python3-packaging_24.2-1_all.deb ... 123s Unpacking python3-packaging (24.2-1) ... 123s Selecting previously unselected package python3-h5netcdf. 123s Preparing to unpack .../19-python3-h5netcdf_1.4.0-3_all.deb ... 123s Unpacking python3-h5netcdf (1.4.0-3) ... 123s Selecting previously unselected package python3-iniconfig. 123s Preparing to unpack .../20-python3-iniconfig_1.1.1-2_all.deb ... 123s Unpacking python3-iniconfig (1.1.1-2) ... 123s Selecting previously unselected package python3-netcdf4. 123s Preparing to unpack .../21-python3-netcdf4_1.7.2-1build1_amd64.deb ... 123s Unpacking python3-netcdf4 (1.7.2-1build1) ... 123s Selecting previously unselected package python3-pluggy. 123s Preparing to unpack .../22-python3-pluggy_1.5.0-1_all.deb ... 123s Unpacking python3-pluggy (1.5.0-1) ... 123s Selecting previously unselected package python3-pytest. 123s Preparing to unpack .../23-python3-pytest_8.3.3-1_all.deb ... 123s Unpacking python3-pytest (8.3.3-1) ... 123s Selecting previously unselected package autopkgtest-satdep. 123s Preparing to unpack .../24-1-autopkgtest-satdep.deb ... 123s Unpacking autopkgtest-satdep (0) ... 123s Setting up python3-iniconfig (1.1.1-2) ... 123s Setting up python3-all (3.12.6-0ubuntu1) ... 123s Setting up libaec0:amd64 (1.1.3-1) ... 123s Setting up libblas3:amd64 (3.12.0-3build2) ... 123s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 123s Setting up python3-packaging (24.2-1) ... 123s Setting up liblzf1:amd64 (3.6-4) ... 123s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 123s Setting up python3-pluggy (1.5.0-1) ... 123s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 123s Setting up libsz2:amd64 (1.1.3-1) ... 123s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 123s Setting up liblapack3:amd64 (3.12.0-3build2) ... 123s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 123s Setting up python3-pytest (8.3.3-1) ... 124s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 125s Setting up libjs-sphinxdoc (7.4.7-4) ... 125s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 125s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 125s Setting up libnetcdf19t64:amd64 (1:4.9.2-6ubuntu1) ... 125s Setting up python3-h5py-serial (3.11.0-8ubuntu1) ... 125s Setting up python-h5netcdf-doc (1.4.0-3) ... 125s Setting up python3-h5py (3.11.0-8ubuntu1) ... 125s Setting up python3-cftime (1.6.4-1build1) ... 125s Setting up python3-netcdf4 (1.7.2-1build1) ... 125s Setting up python3-h5netcdf (1.4.0-3) ... 125s Setting up autopkgtest-satdep (0) ... 125s Processing triggers for man-db (2.13.0-1) ... 126s Processing triggers for libc-bin (2.40-1ubuntu3) ... 128s (Reading database ... 77077 files and directories currently installed.) 128s Removing autopkgtest-satdep (0) ... 129s autopkgtest [19:05:40]: test command1: set -e ; cp -a h5netcdf/tests "$AUTOPKGTEST_TMP" ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -m pytest -v tests -k "not ros3" ; done 129s autopkgtest [19:05:40]: test command1: [----------------------- 129s Testing with python3.12: 129s ============================= test session starts ============================== 129s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 129s cachedir: .pytest_cache 129s rootdir: /tmp/autopkgtest.G1fu0s/autopkgtest_tmp/tests 129s configfile: pytest.ini 129s plugins: typeguard-4.4.1 130s collecting ... collected 152 items / 1 deselected / 151 selected 130s 130s tests/test_h5netcdf.py::test_write_legacyapi_read_netCDF4 PASSED [ 0%] 130s tests/test_h5netcdf.py::test_roundtrip_h5netcdf_legacyapi PASSED [ 1%] 130s tests/test_h5netcdf.py::test_write_netCDF4_read_legacyapi PASSED [ 1%] 130s tests/test_h5netcdf.py::test_write_h5netcdf_read_legacyapi PASSED [ 2%] 130s tests/test_h5netcdf.py::test_write_h5netcdf_read_netCDF4 PASSED [ 3%] 130s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[testfile.nc-True] PASSED [ 3%] 130s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[testfile.nc-False] PASSED [ 4%] 130s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[hdf5://testfile-True] SKIPPED [ 5%] 130s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[hdf5://testfile-False] SKIPPED [ 5%] 130s tests/test_h5netcdf.py::test_write_netCDF4_read_h5netcdf[True] PASSED [ 6%] 130s tests/test_h5netcdf.py::test_write_netCDF4_read_h5netcdf[False] PASSED [ 7%] 130s tests/test_h5netcdf.py::test_write_legacyapi_read_h5netcdf[True] PASSED [ 7%] 130s tests/test_h5netcdf.py::test_write_legacyapi_read_h5netcdf[False] PASSED [ 8%] 130s tests/test_h5netcdf.py::test_fileobj[True] PASSED [ 9%] 130s tests/test_h5netcdf.py::test_fileobj[False] PASSED [ 9%] 131s tests/test_h5netcdf.py::test_h5py_file_obj[True] PASSED [ 10%] 131s tests/test_h5netcdf.py::test_h5py_file_obj[False] PASSED [ 11%] 131s tests/test_h5netcdf.py::test_repr[testfile.nc] PASSED [ 11%] 131s tests/test_h5netcdf.py::test_repr[hdf5://testfile] SKIPPED (h5pyd pa...) [ 12%] 131s tests/test_h5netcdf.py::test_attrs_api[testfile.nc] PASSED [ 13%] 131s tests/test_h5netcdf.py::test_attrs_api[hdf5://testfile] SKIPPED (h5p...) [ 13%] 131s tests/test_h5netcdf.py::test_shape_is_tied_to_coordinate[testfile.nc] PASSED [ 14%] 131s tests/test_h5netcdf.py::test_shape_is_tied_to_coordinate[hdf5://testfile] SKIPPED [ 15%] 131s tests/test_h5netcdf.py::test_optional_netcdf4_attrs[testfile.nc] PASSED [ 15%] 131s tests/test_h5netcdf.py::test_optional_netcdf4_attrs[hdf5://testfile] SKIPPED [ 16%] 131s tests/test_h5netcdf.py::test_error_handling[testfile.nc] PASSED [ 17%] 131s tests/test_h5netcdf.py::test_error_handling[hdf5://testfile] SKIPPED [ 17%] 131s tests/test_h5netcdf.py::test_decode_string_error[testfile.nc] PASSED [ 18%] 131s tests/test_h5netcdf.py::test_decode_string_error[hdf5://testfile] SKIPPED [ 19%] 131s tests/test_h5netcdf.py::test_invalid_netcdf4[testfile.nc] PASSED [ 19%] 131s tests/test_h5netcdf.py::test_invalid_netcdf4[hdf5://testfile] SKIPPED [ 20%] 131s tests/test_h5netcdf.py::test_fake_phony_dims[testfile.nc] PASSED [ 21%] 131s tests/test_h5netcdf.py::test_fake_phony_dims[hdf5://testfile] SKIPPED [ 21%] 131s tests/test_h5netcdf.py::test_invalid_netcdf4_mixed[testfile.nc] PASSED [ 22%] 131s tests/test_h5netcdf.py::test_invalid_netcdf4_mixed[hdf5://testfile] SKIPPED [ 23%] 131s tests/test_h5netcdf.py::test_invalid_netcdf_malformed_dimension_scales[testfile.nc] PASSED [ 23%] 131s tests/test_h5netcdf.py::test_invalid_netcdf_malformed_dimension_scales[hdf5://testfile] SKIPPED [ 24%] 131s tests/test_h5netcdf.py::test_hierarchical_access_auto_create[testfile.nc] PASSED [ 25%] 131s tests/test_h5netcdf.py::test_hierarchical_access_auto_create[hdf5://testfile] SKIPPED [ 25%] 131s tests/test_h5netcdf.py::test_Netcdf4Dimid[testfile.nc] PASSED [ 26%] 131s tests/test_h5netcdf.py::test_Netcdf4Dimid[hdf5://testfile] SKIPPED (...) [ 27%] 131s tests/test_h5netcdf.py::test_reading_str_array_from_netCDF4[True] PASSED [ 27%] 131s tests/test_h5netcdf.py::test_reading_str_array_from_netCDF4[False] PASSED [ 28%] 131s tests/test_h5netcdf.py::test_nc_properties_new[testfile.nc] PASSED [ 29%] 131s tests/test_h5netcdf.py::test_nc_properties_new[hdf5://testfile] SKIPPED [ 29%] 131s tests/test_h5netcdf.py::test_failed_read_open_and_clean_delete PASSED [ 30%] 131s tests/test_h5netcdf.py::test_create_variable_matching_saved_dimension[testfile.nc] PASSED [ 31%] 131s tests/test_h5netcdf.py::test_create_variable_matching_saved_dimension[hdf5://testfile] SKIPPED [ 31%] 131s tests/test_h5netcdf.py::test_invalid_netcdf_error[testfile.nc] PASSED [ 32%] 131s tests/test_h5netcdf.py::test_invalid_netcdf_error[hdf5://testfile] SKIPPED [ 33%] 131s tests/test_h5netcdf.py::test_invalid_netcdf_okay[testfile.nc] PASSED [ 33%] 131s tests/test_h5netcdf.py::test_invalid_netcdf_okay[hdf5://testfile] SKIPPED [ 34%] 131s tests/test_h5netcdf.py::test_invalid_netcdf_overwrite_valid PASSED [ 35%] 131s tests/test_h5netcdf.py::test_reopen_file_different_dimension_sizes PASSED [ 35%] 131s tests/test_h5netcdf.py::test_invalid_then_valid_no_ncproperties[testfile.nc] PASSED [ 36%] 131s tests/test_h5netcdf.py::test_invalid_then_valid_no_ncproperties[hdf5://testfile] SKIPPED [ 37%] 131s tests/test_h5netcdf.py::test_creating_and_resizing_unlimited_dimensions[testfile.nc] PASSED [ 37%] 131s tests/test_h5netcdf.py::test_creating_and_resizing_unlimited_dimensions[hdf5://testfile] SKIPPED [ 38%] 131s tests/test_h5netcdf.py::test_creating_variables_with_unlimited_dimensions[testfile.nc] PASSED [ 39%] 131s tests/test_h5netcdf.py::test_creating_variables_with_unlimited_dimensions[hdf5://testfile] SKIPPED [ 39%] 131s tests/test_h5netcdf.py::test_writing_to_an_unlimited_dimension[testfile.nc] PASSED [ 40%] 131s tests/test_h5netcdf.py::test_writing_to_an_unlimited_dimension[hdf5://testfile] SKIPPED [ 41%] 131s tests/test_h5netcdf.py::test_c_api_can_read_unlimited_dimensions PASSED [ 41%] 131s tests/test_h5netcdf.py::test_reading_unlimited_dimensions_created_with_c_api PASSED [ 42%] 131s tests/test_h5netcdf.py::test_reading_unused_unlimited_dimension[testfile.nc] PASSED [ 43%] 131s tests/test_h5netcdf.py::test_reading_unused_unlimited_dimension[hdf5://testfile] SKIPPED [ 43%] 131s tests/test_h5netcdf.py::test_reading_special_datatype_created_with_c_api PASSED [ 44%] 131s tests/test_h5netcdf.py::test_nc4_non_coord[testfile.nc] PASSED [ 45%] 131s tests/test_h5netcdf.py::test_nc4_non_coord[hdf5://testfile] SKIPPED [ 45%] 131s tests/test_h5netcdf.py::test_overwrite_existing_file PASSED [ 46%] 131s tests/test_h5netcdf.py::test_scales_on_append PASSED [ 47%] 131s tests/test_h5netcdf.py::test_create_attach_scales_netcdf4 PASSED [ 47%] 131s tests/test_h5netcdf.py::test_create_attach_scales_legacyapi PASSED [ 48%] 131s tests/test_h5netcdf.py::test_detach_scale[testfile.nc] PASSED [ 49%] 131s tests/test_h5netcdf.py::test_detach_scale[hdf5://testfile] SKIPPED (...) [ 49%] 131s tests/test_h5netcdf.py::test_is_scale[testfile.nc] PASSED [ 50%] 131s tests/test_h5netcdf.py::test_is_scale[hdf5://testfile] SKIPPED (h5py...) [ 50%] 131s tests/test_h5netcdf.py::test_get_dim_scale_refs[testfile.nc] PASSED [ 51%] 131s tests/test_h5netcdf.py::test_get_dim_scale_refs[hdf5://testfile] SKIPPED [ 52%] 131s tests/test_h5netcdf.py::test_dimensions[read_write_matrix0] PASSED [ 52%] 131s tests/test_h5netcdf.py::test_dimensions[read_write_matrix1] PASSED [ 53%] 131s tests/test_h5netcdf.py::test_dimensions[read_write_matrix2] PASSED [ 54%] 131s tests/test_h5netcdf.py::test_dimensions[read_write_matrix3] PASSED [ 54%] 131s tests/test_h5netcdf.py::test_dimensions[read_write_matrix4] PASSED [ 55%] 131s tests/test_h5netcdf.py::test_dimensions[read_write_matrix5] PASSED [ 56%] 131s tests/test_h5netcdf.py::test_dimensions[read_write_matrix6] PASSED [ 56%] 131s tests/test_h5netcdf.py::test_dimensions[read_write_matrix7] PASSED [ 57%] 131s tests/test_h5netcdf.py::test_dimensions[read_write_matrix8] PASSED [ 58%] 131s tests/test_h5netcdf.py::test_no_circular_references[testfile.nc] PASSED [ 58%] 131s tests/test_h5netcdf.py::test_no_circular_references[hdf5://testfile] SKIPPED [ 59%] 132s tests/test_h5netcdf.py::test_expanded_variables_netcdf4[netCDF4] PASSED [ 60%] 132s tests/test_h5netcdf.py::test_expanded_variables_netcdf4[h5netcdf.legacyapi] PASSED [ 60%] 132s tests/test_h5netcdf.py::test_creation_with_h5netcdf_edit_with_netcdf4 PASSED [ 61%] 132s tests/test_h5netcdf.py::test_track_order_specification PASSED [ 62%] 132s tests/test_h5netcdf.py::test_more_than_7_attr_creation PASSED [ 62%] 132s tests/test_h5netcdf.py::test_more_than_7_attr_creation_track_order[False] PASSED [ 63%] 132s tests/test_h5netcdf.py::test_more_than_7_attr_creation_track_order[True] PASSED [ 64%] 132s tests/test_h5netcdf.py::test_group_names PASSED [ 64%] 132s tests/test_h5netcdf.py::test_legacyapi_endianess[testfile.nc] PASSED [ 65%] 132s tests/test_h5netcdf.py::test_legacyapi_endianess[hdf5://testfile] SKIPPED [ 66%] 132s tests/test_h5netcdf.py::test_bool_slicing_length_one_dim PASSED [ 66%] 132s tests/test_h5netcdf.py::test_fancy_indexing[testfile.nc] PASSED [ 67%] 132s tests/test_h5netcdf.py::test_fancy_indexing[hdf5://testfile] SKIPPED [ 68%] 132s tests/test_h5netcdf.py::test_h5py_chunking PASSED [ 68%] 132s tests/test_h5netcdf.py::test_h5netcdf_chunking PASSED [ 69%] 132s tests/test_h5netcdf.py::test_create_invalid_netcdf_catch_error[testfile.nc] PASSED [ 70%] 132s tests/test_h5netcdf.py::test_create_invalid_netcdf_catch_error[hdf5://testfile] SKIPPED [ 70%] 132s tests/test_h5netcdf.py::test_dimensions_in_parent_groups PASSED [ 71%] 132s tests/test_h5netcdf.py::test_array_attributes PASSED [ 72%] 132s tests/test_h5netcdf.py::test_vlen_string_dataset_fillvalue[True] PASSED [ 72%] 132s tests/test_h5netcdf.py::test_vlen_string_dataset_fillvalue[False] PASSED [ 73%] 132s tests/test_h5netcdf.py::test_user_type_errors_new_api[testfile.nc] PASSED [ 74%] 132s tests/test_h5netcdf.py::test_user_type_errors_new_api[hdf5://testfile] SKIPPED [ 74%] 132s tests/test_h5netcdf.py::test_user_type_errors_legacyapi[testfile.nc] PASSED [ 75%] 132s tests/test_h5netcdf.py::test_user_type_errors_legacyapi[hdf5://testfile] SKIPPED [ 76%] 132s tests/test_h5netcdf.py::test_enum_type_errors_new_api[testfile.nc] PASSED [ 76%] 132s tests/test_h5netcdf.py::test_enum_type_errors_new_api[hdf5://testfile] SKIPPED [ 77%] 132s tests/test_h5netcdf.py::test_enum_type_errors_legacyapi[testfile.nc] PASSED [ 78%] 132s tests/test_h5netcdf.py::test_enum_type_errors_legacyapi[hdf5://testfile] SKIPPED [ 78%] 132s tests/test_h5netcdf.py::test_enum_type[testfile.nc] PASSED [ 79%] 132s tests/test_h5netcdf.py::test_enum_type[hdf5://testfile] SKIPPED (h5p...) [ 80%] 132s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-int] PASSED [ 80%] 132s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-int8] PASSED [ 81%] 132s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-uint16] PASSED [ 82%] 132s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-float32] PASSED [ 82%] 132s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-int64] PASSED [ 83%] 132s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-int] PASSED [ 84%] 132s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-int8] PASSED [ 84%] 132s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-uint16] PASSED [ 85%] 132s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-float32] PASSED [ 86%] 132s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-int64] PASSED [ 86%] 132s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-int] SKIPPED [ 87%] 132s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-int8] SKIPPED [ 88%] 132s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-uint16] SKIPPED [ 88%] 132s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-float32] SKIPPED [ 89%] 132s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-int64] SKIPPED [ 90%] 132s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-int] SKIPPED [ 90%] 132s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-int8] SKIPPED [ 91%] 132s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-uint16] SKIPPED [ 92%] 132s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-float32] SKIPPED [ 92%] 132s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-int64] SKIPPED [ 93%] 132s tests/test_h5netcdf.py::test_compoundtype_creation[testfile.nc-netCDF4] PASSED [ 94%] 132s tests/test_h5netcdf.py::test_compoundtype_creation[testfile.nc-h5netcdf.legacyapi] PASSED [ 94%] 132s tests/test_h5netcdf.py::test_compoundtype_creation[hdf5://testfile-netCDF4] SKIPPED [ 95%] 132s tests/test_h5netcdf.py::test_compoundtype_creation[hdf5://testfile-h5netcdf.legacyapi] SKIPPED [ 96%] 132s tests/test_h5netcdf.py::test_nc_complex_compatibility[testfile.nc-netCDF4] PASSED [ 96%] 132s tests/test_h5netcdf.py::test_nc_complex_compatibility[testfile.nc-h5netcdf.legacyapi] PASSED [ 97%] 132s tests/test_h5netcdf.py::test_nc_complex_compatibility[hdf5://testfile-netCDF4] SKIPPED [ 98%] 132s tests/test_h5netcdf.py::test_nc_complex_compatibility[hdf5://testfile-h5netcdf.legacyapi] SKIPPED [ 98%] 132s tests/test_h5netcdf.py::test_complex_type_creation_errors PASSED [ 99%] 132s tests/test_h5netcdf.py::test_hsds SKIPPED (h5pyd package not available) [100%] 132s 132s ================ 100 passed, 51 skipped, 1 deselected in 2.50s ================= 132s autopkgtest [19:05:43]: test command1: -----------------------] 133s command1 PASS 133s autopkgtest [19:05:44]: test command1: - - - - - - - - - - results - - - - - - - - - - 133s autopkgtest [19:05:44]: test command2: preparing testbed 134s Reading package lists... 135s Building dependency tree... 135s Reading state information... 135s Starting pkgProblemResolver with broken count: 0 135s Starting 2 pkgProblemResolver with broken count: 0 135s Done 135s The following NEW packages will be installed: 135s autopkgtest-satdep 135s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 135s Need to get 0 B/736 B of archives. 135s After this operation, 0 B of additional disk space will be used. 135s Get:1 /tmp/autopkgtest.G1fu0s/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [736 B] 135s Selecting previously unselected package autopkgtest-satdep. 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 77077 files and directories currently installed.) 135s Preparing to unpack .../2-autopkgtest-satdep.deb ... 135s Unpacking autopkgtest-satdep (0) ... 135s Setting up autopkgtest-satdep (0) ... 137s (Reading database ... 77077 files and directories currently installed.) 137s Removing autopkgtest-satdep (0) ... 138s autopkgtest [19:05:49]: test command2: set -e ; cp -a h5netcdf/tests "$AUTOPKGTEST_TMP" ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -m pytest -v tests -k ros3 ; done 138s autopkgtest [19:05:49]: test command2: [----------------------- 138s Testing with python3.12: 138s ============================= test session starts ============================== 138s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 138s cachedir: .pytest_cache 138s rootdir: /tmp/autopkgtest.G1fu0s/autopkgtest_tmp/tests 138s configfile: pytest.ini 138s plugins: typeguard-4.4.1 139s collecting ... collected 152 items / 151 deselected / 1 selected 139s 176s tests/test_h5netcdf.py::test_ros3 PASSED [100%] 176s 176s ====================== 1 passed, 151 deselected in 38.30s ====================== 177s autopkgtest [19:06:28]: test command2: -----------------------] 177s command2 PASS 177s autopkgtest [19:06:28]: test command2: - - - - - - - - - - results - - - - - - - - - - 178s autopkgtest [19:06:29]: @@@@@@@@@@@@@@@@@@@@ summary 178s command1 PASS 178s command2 PASS 182s nova [W] Skipping flock for amd64 182s Creating nova instance adt-plucky-amd64-python-h5netcdf-20241118-190331-juju-7f2275-prod-proposed-migration-environment-15-f7a3c5b6-b7a5-416c-8882-213f482d9b66 from image adt/ubuntu-plucky-amd64-server-20241117.img (UUID 63768d6e-10e4-41f6-a5bf-8295c4d8ad4b)...